1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Hsu, C. Park, S. Mortenson, D.E. Foley, B. Wang, X. Woods, R.J. Case, D.A. Powers, E.T. Wong, C. Dyson, H. Kelly, J.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H12 O6 180.156 beta-D-allopyranose beta-D-allose; D-allose; allose; D-ALLOPYRANOSE D-saccharide, beta linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 R C N 15 R C N 16 R C N 17 S C N 18 R C N 19 N C N 20 N O N 21 N O N 22 N O N 23 N O N 24 N O N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N C N 44 N C N 45 N N N 46 N C N 47 N N N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N O N 72 N N N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N N N 83 S C N 84 N C N 85 N O N 86 N C N 87 N C N 88 N C N 89 N O N 90 N N N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N N N 103 S C N 104 N C N 105 N O N 106 N C N 107 N C N 108 N C N 109 N O N 110 N O N 111 N O N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N N N 122 N C N 123 N C N 124 N O N 125 N O N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N N N 132 S C N 133 N C N 134 N O N 135 N C Y 136 N C Y 137 N N Y 138 N C Y 139 N C Y 140 N N N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N N N 153 S C N 154 N C N 155 N O N 156 S C N 157 N C N 158 N C N 159 N C N 160 N O N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N N N 175 S C N 176 N C N 177 N O N 178 N C N 179 N C N 180 N C N 181 N C N 182 N O N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N N N 197 S C N 198 N C N 199 N O N 200 N C N 201 N C N 202 N C N 203 N C N 204 N N N 205 N O N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N N N 222 S C N 223 N C N 224 N O N 225 N C N 226 N C N 227 N S N 228 N C N 229 N O N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N N N 242 S C N 243 N C N 244 N O N 245 N C Y 246 N C Y 247 N C Y 248 N C Y 249 N C Y 250 N C Y 251 N C N 252 N O N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C N 269 N C N 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N N N 282 S C N 283 N C N 284 N O N 285 N C N 286 N O N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N N N 296 S C N 297 N C N 298 N O N 299 R C N 300 N O N 301 N C N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N N Y 321 N C Y 322 N C Y 323 N C Y 324 N C Y 325 N C N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N N N 340 S C N 341 N C N 342 N O N 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N C Y 349 N C N 350 N O N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C N 368 N C N 369 N C N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N doub N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N doub N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N doub N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing Y 136 N sing Y 137 N doub Y 138 N doub N 139 N sing Y 140 N sing N 141 N sing Y 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing Y 242 N doub Y 243 N sing Y 244 N sing N 245 N sing Y 246 N doub N 247 N sing Y 248 N doub N 249 N sing Y 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N doub N 307 N sing N 308 N sing N 309 N sing N 310 N sing Y 311 N doub Y 312 N sing Y 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N sing Y 320 N doub N 321 N sing Y 322 N doub N 323 N sing Y 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing Y 339 N doub Y 340 N sing Y 341 N sing N 342 N sing Y 343 N doub N 344 N sing Y 345 N doub N 346 N sing Y 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N doub N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing US J.Am.Chem.Soc. JACSAT 0004 0002-7863 138 7636 7648 10.1021/jacs.6b02879 27249581 The Dependence of Carbohydrate-Aromatic Interaction Strengths on the Structure of the Carbohydrate. 2016 10.2210/pdb2nc3/pdb pdb_00002nc3 10.13018/BMR26005 3849.313 Pin1 WW Domain 1 syn polymer 180.156 beta-D-allopyranose 1 syn non-polymer no no KLPPGWEKRMFANGTVYYFNHITNASQFERPSG KLPPGWEKRMFANGTVYYFNHITNASQFERPSG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n atom_site pdbx_unobs_or_zero_occ_atoms pdbx_validate_close_contact struct_conn chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly pdbx_nmr_software struct_site struct_site_gen chem_comp database_2 pdbx_database_status chem_comp_atom chem_comp_bond database_2 repository Initial release Carbohydrate remediation repository Remediation Database references Advisory Atomic model Derived calculations Data collection Derived calculations Structure summary Database references Other Structure summary Data collection Database references 1 0 2016-06-08 1 1 2016-07-13 2 0 2017-11-15 2 1 2020-07-29 2 2 2023-06-14 2 3 2024-05-15 _atom_site.auth_atom_id _atom_site.label_atom_id _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _pdbx_nmr_software.name _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _database_2.pdbx_DOI DAllpb b-D-allopyranose b-D-Allp All BMRB Y RCSB 2016-03-20 REL REL REL REL ALL beta-D-allopyranose 9606 human homo sapiens sample 546 287 109 41 109 0 29 29 structures with the lowest energy 100 20 0.08 0.214 2D 1H-1H TOCSY 2D DQF-COSY 2D 1H-1H NOESY 1.5 uM 50 6.5 ambient 285 K simulated annealing 1 lowest energy 1.5 uM Pin WW Domain Peptide-1, 90% H2O/10% D2O 90% H2O/10% D2O Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman structure solution Amber refinement Amber 600 Bruker DRX Bruker DRX ALL 34 2 ALL ALL 101 A LYS 1 n 1 LYS 1 A LEU 2 n 2 LEU 2 A PRO 3 n 3 PRO 3 A PRO 4 n 4 PRO 4 A GLY 5 n 5 GLY 5 A TRP 6 n 6 TRP 6 A GLU 7 n 7 GLU 7 A LYS 8 n 8 LYS 8 A ARG 9 n 9 ARG 9 A MET 10 n 10 MET 10 A PHE 11 n 11 PHE 11 A ALA 12 n 12 ALA 12 A ASN 13 n 13 ASN 13 A GLY 14 n 14 GLY 14 A THR 15 n 15 THR 15 A VAL 16 n 16 VAL 16 A TYR 17 n 17 TYR 17 A TYR 18 n 18 TYR 18 A PHE 19 n 19 PHE 19 A ASN 20 n 20 ASN 20 A HIS 21 n 21 HIS 21 A ILE 22 n 22 ILE 22 A THR 23 n 23 THR 23 A ASN 24 n 24 ASN 24 A ALA 25 n 25 ALA 25 A SER 26 n 26 SER 26 A GLN 27 n 27 GLN 27 A PHE 28 n 28 PHE 28 A GLU 29 n 29 GLU 29 A ARG 30 n 30 ARG 30 A PRO 31 n 31 PRO 31 A SER 32 n 32 SER 32 A GLY 33 n 33 GLY 33 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 7 A N GLU 7 A O PHE 19 A O PHE 19 A N TYR 18 A N TYR 18 A O GLN 27 A O GLN 27 1 A O1 ALL 101 B O1 ALL 1 1 N 2 A O1 ALL 101 B O1 ALL 1 1 N 3 A O1 ALL 101 B O1 ALL 1 1 N 4 A O1 ALL 101 B O1 ALL 1 1 N 5 A O1 ALL 101 B O1 ALL 1 1 N 6 A O1 ALL 101 B O1 ALL 1 1 N 7 A O1 ALL 101 B O1 ALL 1 1 N 8 A O1 ALL 101 B O1 ALL 1 1 N 9 A O1 ALL 101 B O1 ALL 1 1 N 10 A O1 ALL 101 B O1 ALL 1 1 N 11 A O1 ALL 101 B O1 ALL 1 1 N 12 A O1 ALL 101 B O1 ALL 1 1 N 13 A O1 ALL 101 B O1 ALL 1 1 N 14 A O1 ALL 101 B O1 ALL 1 1 N 15 A O1 ALL 101 B O1 ALL 1 1 N 16 A O1 ALL 101 B O1 ALL 1 1 N 17 A O1 ALL 101 B O1 ALL 1 1 N 18 A O1 ALL 101 B O1 ALL 1 1 N 19 A O1 ALL 101 B O1 ALL 1 1 N 20 A O1 ALL 101 B O1 ALL 1 1 N 1 A A ND2 C1 ASN ALL 13 101 1.45 2 A A ND2 C1 ASN ALL 13 101 1.45 3 A A ND2 C1 ASN ALL 13 101 1.45 4 A A ND2 C1 ASN ALL 13 101 1.45 5 A A ND2 C1 ASN ALL 13 101 1.45 6 A A ND2 C1 ASN ALL 13 101 1.45 7 A A ND2 C1 ASN ALL 13 101 1.45 8 A A ND2 C1 ASN ALL 13 101 1.45 9 A A ND2 C1 ASN ALL 13 101 1.45 10 A A ND2 C1 ASN ALL 13 101 1.45 11 A A ND2 C1 ASN ALL 13 101 1.45 12 A A ND2 C1 ASN ALL 13 101 1.45 13 A A ND2 C1 ASN ALL 13 101 1.45 14 A A ND2 C1 ASN ALL 13 101 1.45 15 A A ND2 C1 ASN ALL 13 101 1.45 16 A A ND2 C1 ASN ALL 13 101 1.44 17 A A ND2 C1 ASN ALL 13 101 1.45 18 A A ND2 C1 ASN ALL 13 101 1.44 19 A A ND2 C1 ASN ALL 13 101 1.44 20 A A ND2 C1 ASN ALL 13 101 1.45 9 A ARG 9 0.083 SIDE CHAIN 3 3.03 0.50 120.30 123.33 A A A NE CZ NH1 ARG ARG ARG 30 30 30 N 8 3.33 0.50 120.30 123.63 A A A NE CZ NH2 ARG ARG ARG 9 9 9 N 8 3.42 0.50 120.30 123.72 A A A NE CZ NH1 ARG ARG ARG 30 30 30 N 9 4.62 0.50 120.30 124.92 A A A NE CZ NH1 ARG ARG ARG 9 9 9 N 12 3.25 0.50 120.30 123.55 A A A NE CZ NH1 ARG ARG ARG 30 30 30 N 13 3.33 0.50 120.30 123.63 A A A NE CZ NH1 ARG ARG ARG 30 30 30 N 14 3.19 0.50 120.30 123.49 A A A NE CZ NH2 ARG ARG ARG 30 30 30 N 15 3.38 0.50 120.30 123.68 A A A NE CZ NH2 ARG ARG ARG 30 30 30 N 17 3.20 0.50 120.30 123.50 A A A NE CZ NH2 ARG ARG ARG 30 30 30 N 18 3.32 0.50 120.30 123.62 A A A NE CZ NH2 ARG ARG ARG 30 30 30 N 19 3.51 0.50 120.30 123.81 A A A NE CZ NH1 ARG ARG ARG 30 30 30 N 8 A ASN 24 53.84 15.04 9 A ASN 24 53.87 16.84 11 A LEU 2 60.58 165.03 12 A LEU 2 60.88 143.40 16 A ASN 24 59.91 16.11 17 A SER 32 58.97 175.80 18 A ASN 24 53.69 17.36 20 A LEU 2 60.47 163.12 lowest energy, model20 Solution Structure of N-Allosylated Pin1 WW Domain 1 N N 2 N N ISOMERASE enhanced aromatic sequon, ISOMERASE 2NC3 PDB 1 2NC3 1 33 2NC3 1 33 2NC3 A 1 1 33 3 anti-parallel anti-parallel A TRP 6 A TRP 6 A MET 10 A MET 10 A VAL 16 A VAL 16 A ASN 20 A ASN 20 A SER 26 A SER 26 A GLN 27 A GLN 27