0.008300 0.004792 0.000000 0.000000 0.009584 0.000000 0.000000 0.000000 0.023743 0.00000 0.00000 0.00000 Zhao, G. Yuan, C. Wind, T. Andreasen, P.A. Huang, Z. Huang, M. Structural Genomics Consortium (SGC) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 9 90.00 90.00 120.00 120.481 120.481 42.117 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US J.Struct.Biol. JSBIEM 0803 1047-8477 160 1 10 10.1016/j.jsb.2007.06.003 17692534 Structural basis of specificity of a peptidyl urokinase inhibitor, upain-1 2007 10.2210/pdb2nwn/pdb pdb_00002nwn 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 2005-03-25 BRUKER SMART 6000 SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE BRUKER AXS MICROSTAR 28442.373 Plasminogen activator, urokinase C-terminal domain, residues 16-250 C122A/N145Q 1 man polymer 1494.745 upain-1 1 syn polymer 18.015 water 133 nat water uPA no no IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHTKEENGLAL IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHTKEENGLAL A polypeptide(L) no no CSWRGLENHRMC CSWRGLENHRMC B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Pichia sample 9606 Homo sapiens 4922 Pichia pastoris X-33 plasmid pPICZALPHAA 1 2.10 37.38 VAPOR DIFFUSION, SITTING DROP 4.50 0.05M sodium citrate, 1.95M (NH4)2SO4, 0.05% NaN3, 5% PEG 400, pH 4.50, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 Structural Genomics Consortium SGC database_2 struct_ref_seq_dif chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Database references Data collection Refinement description 1 0 2007-10-16 1 1 2011-07-13 1 2 2021-11-10 1 3 2023-10-25 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details Y RCSB Y PDBJ 2006-11-16 REL REL HOH water This peptide was chemically synthesized by solid phase synthesis and purified by reverse phase HPLC. sample 1F5K PDB ENTRY 1F5K PDB experimental model HOH 251 3 HOH HOH 251 A HOH 252 3 HOH HOH 252 A HOH 253 3 HOH HOH 253 A HOH 254 3 HOH HOH 254 A HOH 255 3 HOH HOH 255 A HOH 256 3 HOH HOH 256 A HOH 257 3 HOH HOH 257 A HOH 258 3 HOH HOH 258 A HOH 259 3 HOH HOH 259 A HOH 260 3 HOH HOH 260 A HOH 261 3 HOH HOH 261 A HOH 262 3 HOH HOH 262 A HOH 263 3 HOH HOH 263 A HOH 264 3 HOH HOH 264 A HOH 265 3 HOH HOH 265 A HOH 266 3 HOH HOH 266 A HOH 267 3 HOH HOH 267 A HOH 268 3 HOH HOH 268 A HOH 269 3 HOH HOH 269 A HOH 270 3 HOH HOH 270 A HOH 271 3 HOH HOH 271 A HOH 272 3 HOH HOH 272 A HOH 273 3 HOH HOH 273 A HOH 274 3 HOH HOH 274 A HOH 275 3 HOH HOH 275 A HOH 276 3 HOH HOH 276 A HOH 277 3 HOH HOH 277 A HOH 278 3 HOH HOH 278 A HOH 279 3 HOH HOH 279 A HOH 280 3 HOH HOH 280 A HOH 281 3 HOH HOH 281 A HOH 282 3 HOH HOH 282 A HOH 283 3 HOH HOH 283 A HOH 284 3 HOH HOH 284 A HOH 285 3 HOH HOH 285 A HOH 286 3 HOH HOH 286 A HOH 287 3 HOH HOH 287 A HOH 288 3 HOH HOH 288 A HOH 289 3 HOH HOH 289 A HOH 290 3 HOH HOH 290 A HOH 291 3 HOH HOH 291 A HOH 292 3 HOH HOH 292 A HOH 293 3 HOH HOH 293 A HOH 294 3 HOH HOH 294 A HOH 295 3 HOH HOH 295 A HOH 296 3 HOH HOH 296 A HOH 297 3 HOH HOH 297 A HOH 298 3 HOH HOH 298 A HOH 299 3 HOH HOH 299 A HOH 300 3 HOH HOH 300 A HOH 301 3 HOH HOH 301 A HOH 302 3 HOH HOH 302 A HOH 303 3 HOH HOH 303 A HOH 304 3 HOH HOH 304 A HOH 305 3 HOH HOH 305 A HOH 306 3 HOH HOH 306 A HOH 307 3 HOH HOH 307 A HOH 308 3 HOH HOH 308 A HOH 309 3 HOH HOH 309 A HOH 310 3 HOH HOH 310 A HOH 311 3 HOH HOH 311 A HOH 312 3 HOH HOH 312 A HOH 313 3 HOH HOH 313 A HOH 314 3 HOH HOH 314 A HOH 315 3 HOH HOH 315 A HOH 316 3 HOH HOH 316 A HOH 317 3 HOH HOH 317 A HOH 318 3 HOH HOH 318 A HOH 319 3 HOH HOH 319 A HOH 320 3 HOH HOH 320 A HOH 321 3 HOH HOH 321 A HOH 322 3 HOH HOH 322 A HOH 323 3 HOH HOH 323 A HOH 324 3 HOH HOH 324 A HOH 325 3 HOH HOH 325 A HOH 326 3 HOH HOH 326 A HOH 327 3 HOH HOH 327 A HOH 328 3 HOH HOH 328 A HOH 329 3 HOH HOH 329 A HOH 330 3 HOH HOH 330 A HOH 331 3 HOH HOH 331 A HOH 332 3 HOH HOH 332 A HOH 333 3 HOH HOH 333 A HOH 334 3 HOH HOH 334 A HOH 335 3 HOH HOH 335 A HOH 336 3 HOH HOH 336 A HOH 337 3 HOH HOH 337 A HOH 338 3 HOH HOH 338 A HOH 339 3 HOH HOH 339 A HOH 340 3 HOH HOH 340 A HOH 341 3 HOH HOH 341 A HOH 342 3 HOH HOH 342 A HOH 343 3 HOH HOH 343 A HOH 344 3 HOH HOH 344 A HOH 345 3 HOH HOH 345 A HOH 346 3 HOH HOH 346 A HOH 347 3 HOH HOH 347 A HOH 348 3 HOH HOH 348 A HOH 349 3 HOH HOH 349 A HOH 350 3 HOH HOH 350 A HOH 351 3 HOH HOH 351 A HOH 352 3 HOH HOH 352 A HOH 353 3 HOH HOH 353 A HOH 354 3 HOH HOH 354 A HOH 355 3 HOH HOH 355 A HOH 356 3 HOH HOH 356 A HOH 357 3 HOH HOH 357 A HOH 358 3 HOH HOH 358 A HOH 359 3 HOH HOH 359 A HOH 360 3 HOH HOH 360 A HOH 361 3 HOH HOH 361 A HOH 362 3 HOH HOH 362 A HOH 363 3 HOH HOH 363 A HOH 364 3 HOH HOH 364 A HOH 365 3 HOH HOH 365 A HOH 366 3 HOH HOH 366 A HOH 367 3 HOH HOH 367 A HOH 368 3 HOH HOH 368 A HOH 369 3 HOH HOH 369 A HOH 370 3 HOH HOH 370 A HOH 371 3 HOH HOH 371 A HOH 372 3 HOH HOH 372 A HOH 373 3 HOH HOH 373 A HOH 374 3 HOH HOH 374 A HOH 375 3 HOH HOH 375 A HOH 376 3 HOH HOH 376 A HOH 13 3 HOH HOH 13 B HOH 14 3 HOH HOH 14 B HOH 15 3 HOH HOH 15 B HOH 16 3 HOH HOH 16 B HOH 17 3 HOH HOH 17 B HOH 18 3 HOH HOH 18 B HOH 19 3 HOH HOH 19 B ILE 16 n 1 ILE 16 A ILE 17 n 2 ILE 17 A GLY 18 n 3 GLY 18 A GLY 19 n 4 GLY 19 A GLU 20 n 5 GLU 20 A PHE 21 n 6 PHE 21 A THR 22 n 7 THR 22 A THR 23 n 8 THR 23 A ILE 24 n 9 ILE 24 A GLU 25 n 10 GLU 25 A ASN 26 n 11 ASN 26 A GLN 27 n 12 GLN 27 A PRO 28 n 13 PRO 28 A TRP 29 n 14 TRP 29 A PHE 30 n 15 PHE 30 A ALA 31 n 16 ALA 31 A ALA 32 n 17 ALA 32 A ILE 33 n 18 ILE 33 A TYR 34 n 19 TYR 34 A ARG 35 n 20 ARG 35 A ARG 36 n 21 ARG 36 A n 22 37 A n 23 A 37 A n 24 B 37 A n 25 C 37 A SER 37 n 26 D SER 37 A VAL 38 n 27 VAL 38 A THR 39 n 28 THR 39 A TYR 40 n 29 TYR 40 A VAL 41 n 30 VAL 41 A CYS 42 n 31 CYS 42 A GLY 43 n 32 GLY 43 A GLY 44 n 33 GLY 44 A SER 45 n 34 SER 45 A LEU 46 n 35 LEU 46 A ILE 47 n 36 ILE 47 A SER 48 n 37 SER 48 A PRO 49 n 38 PRO 49 A CYS 50 n 39 CYS 50 A TRP 51 n 40 TRP 51 A VAL 52 n 41 VAL 52 A ILE 53 n 42 ILE 53 A SER 54 n 43 SER 54 A ALA 55 n 44 ALA 55 A THR 56 n 45 THR 56 A HIS 57 n 46 HIS 57 A CYS 58 n 47 CYS 58 A PHE 59 n 48 PHE 59 A ILE 60 n 49 ILE 60 A ASP 60 n 50 A ASP 60 A TYR 60 n 51 B TYR 60 A PRO 60 n 52 C PRO 60 A LYS 61 n 53 LYS 61 A LYS 62 n 54 LYS 62 A GLU 62 n 55 A GLU 62 A ASP 63 n 56 ASP 63 A TYR 64 n 57 TYR 64 A ILE 65 n 58 ILE 65 A VAL 66 n 59 VAL 66 A TYR 67 n 60 TYR 67 A LEU 68 n 61 LEU 68 A GLY 69 n 62 GLY 69 A ARG 70 n 63 ARG 70 A SER 71 n 64 SER 71 A ARG 72 n 65 ARG 72 A LEU 73 n 66 LEU 73 A ASN 74 n 67 ASN 74 A SER 75 n 68 SER 75 A ASN 76 n 69 ASN 76 A THR 77 n 70 THR 77 A GLN 78 n 71 GLN 78 A GLY 79 n 72 GLY 79 A GLU 80 n 73 GLU 80 A MET 81 n 74 MET 81 A LYS 82 n 75 LYS 82 A PHE 83 n 76 PHE 83 A GLU 84 n 77 GLU 84 A VAL 85 n 78 VAL 85 A GLU 86 n 79 GLU 86 A ASN 87 n 80 ASN 87 A LEU 88 n 81 LEU 88 A ILE 89 n 82 ILE 89 A LEU 90 n 83 LEU 90 A HIS 91 n 84 HIS 91 A LYS 92 n 85 LYS 92 A ASP 93 n 86 ASP 93 A TYR 94 n 87 TYR 94 A SER 95 n 88 SER 95 A ALA 96 n 89 ALA 96 A n 90 97 A n 91 A 97 A LEU 97 n 92 B LEU 97 A ALA 98 n 93 ALA 98 A HIS 99 n 94 HIS 99 A HIS 100 n 95 HIS 100 A ASN 101 n 96 ASN 101 A ASP 102 n 97 ASP 102 A ILE 103 n 98 ILE 103 A ALA 104 n 99 ALA 104 A LEU 105 n 100 LEU 105 A LEU 106 n 101 LEU 106 A LYS 107 n 102 LYS 107 A ILE 108 n 103 ILE 108 A ARG 109 n 104 ARG 109 A SER 110 n 105 SER 110 A LYS 110 n 106 A LYS 110 A GLU 110 n 107 B GLU 110 A GLY 110 n 108 C GLY 110 A ARG 110 n 109 D ARG 110 A CYS 111 n 110 CYS 111 A ALA 112 n 111 ALA 112 A GLN 113 n 112 GLN 113 A PRO 114 n 113 PRO 114 A SER 115 n 114 SER 115 A ARG 116 n 115 ARG 116 A THR 117 n 116 THR 117 A ILE 118 n 117 ILE 118 A GLN 119 n 118 GLN 119 A THR 120 n 119 THR 120 A ILE 121 n 120 ILE 121 A ALA 122 n 121 ALA 122 A LEU 123 n 122 LEU 123 A PRO 124 n 123 PRO 124 A SER 125 n 124 SER 125 A MET 126 n 125 MET 126 A TYR 127 n 126 TYR 127 A ASN 128 n 127 ASN 128 A ASP 129 n 128 ASP 129 A PRO 130 n 129 PRO 130 A GLN 131 n 130 GLN 131 A PHE 132 n 131 PHE 132 A GLY 133 n 132 GLY 133 A THR 134 n 133 THR 134 A SER 135 n 134 SER 135 A CYS 136 n 135 CYS 136 A GLU 137 n 136 GLU 137 A ILE 138 n 137 ILE 138 A THR 139 n 138 THR 139 A GLY 140 n 139 GLY 140 A PHE 141 n 140 PHE 141 A GLY 142 n 141 GLY 142 A LYS 143 n 142 LYS 143 A GLU 144 n 143 GLU 144 A GLN 145 n 144 GLN 145 A SER 146 n 145 SER 146 A THR 147 n 146 THR 147 A ASP 148 n 147 ASP 148 A TYR 149 n 148 TYR 149 A LEU 150 n 149 LEU 150 A TYR 151 n 150 TYR 151 A PRO 152 n 151 PRO 152 A GLU 153 n 152 GLU 153 A GLN 154 n 153 GLN 154 A LEU 155 n 154 LEU 155 A LYS 156 n 155 LYS 156 A MET 157 n 156 MET 157 A THR 158 n 157 THR 158 A VAL 159 n 158 VAL 159 A VAL 160 n 159 VAL 160 A LYS 161 n 160 LYS 161 A LEU 162 n 161 LEU 162 A ILE 163 n 162 ILE 163 A SER 164 n 163 SER 164 A HIS 165 n 164 HIS 165 A ARG 166 n 165 ARG 166 A GLU 167 n 166 GLU 167 A CYS 168 n 167 CYS 168 A GLN 169 n 168 GLN 169 A GLN 170 n 169 GLN 170 A PRO 170 n 170 A PRO 170 A HIS 170 n 171 B HIS 170 A TYR 171 n 172 TYR 171 A TYR 172 n 173 TYR 172 A GLY 173 n 174 GLY 173 A SER 174 n 175 SER 174 A GLU 175 n 176 GLU 175 A VAL 176 n 177 VAL 176 A THR 177 n 178 THR 177 A THR 178 n 179 THR 178 A LYS 179 n 180 LYS 179 A MET 180 n 181 MET 180 A LEU 181 n 182 LEU 181 A CYS 182 n 183 CYS 182 A ALA 183 n 184 ALA 183 A ALA 184 n 185 ALA 184 A ASP 185 n 186 ASP 185 A PRO 185 n 187 A PRO 185 A GLN 185 n 188 B GLN 185 A TRP 186 n 189 TRP 186 A LYS 187 n 190 LYS 187 A THR 188 n 191 THR 188 A ASP 189 n 192 ASP 189 A SER 190 n 193 SER 190 A CYS 191 n 194 CYS 191 A GLN 192 n 195 GLN 192 A GLY 193 n 196 GLY 193 A ASP 194 n 197 ASP 194 A SER 195 n 198 SER 195 A GLY 196 n 199 GLY 196 A GLY 197 n 200 GLY 197 A PRO 198 n 201 PRO 198 A LEU 199 n 202 LEU 199 A VAL 200 n 203 VAL 200 A CYS 201 n 204 CYS 201 A SER 202 n 205 SER 202 A LEU 203 n 206 LEU 203 A GLN 204 n 207 GLN 204 A GLY 205 n 208 GLY 205 A ARG 206 n 209 ARG 206 A MET 207 n 210 MET 207 A THR 208 n 211 THR 208 A LEU 209 n 212 LEU 209 A THR 210 n 213 THR 210 A GLY 211 n 214 GLY 211 A ILE 212 n 215 ILE 212 A VAL 213 n 216 VAL 213 A SER 214 n 217 SER 214 A TRP 215 n 218 TRP 215 A GLY 216 n 219 GLY 216 A ARG 217 n 220 ARG 217 A GLY 219 n 221 GLY 219 A CYS 220 n 222 CYS 220 A ALA 221 n 223 ALA 221 A LEU 222 n 224 LEU 222 A LYS 223 n 225 LYS 223 A ASP 223 n 226 A ASP 223 A LYS 224 n 227 LYS 224 A PRO 225 n 228 PRO 225 A GLY 226 n 229 GLY 226 A VAL 227 n 230 VAL 227 A TYR 228 n 231 TYR 228 A THR 229 n 232 THR 229 A ARG 230 n 233 ARG 230 A VAL 231 n 234 VAL 231 A SER 232 n 235 SER 232 A HIS 233 n 236 HIS 233 A PHE 234 n 237 PHE 234 A LEU 235 n 238 LEU 235 A PRO 236 n 239 PRO 236 A TRP 237 n 240 TRP 237 A ILE 238 n 241 ILE 238 A ARG 239 n 242 ARG 239 A SER 240 n 243 SER 240 A HIS 241 n 244 HIS 241 A THR 242 n 245 THR 242 A LYS 243 n 246 LYS 243 A n 247 244 A n 248 245 A n 249 246 A n 250 247 A n 251 248 A n 252 249 A n 253 250 A CYS 1 n 1 CYS 1 B SER 2 n 2 SER 2 B TRP 3 n 3 TRP 3 B ARG 4 n 4 ARG 4 B GLY 5 n 5 GLY 5 B LEU 6 n 6 LEU 6 B GLU 7 n 7 GLU 7 B ASN 8 n 8 ASN 8 B HIS 9 n 9 HIS 9 B ARG 10 n 10 ARG 10 B MET 11 n 11 MET 11 B CYS 12 n 12 CYS 12 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 20 A N GLU 5 A O MET 157 A O MET 156 A N LYS 161 A N LYS 160 A O ALA 184 A O ALA 185 A N LEU 181 A N LEU 182 A O TYR 228 A O TYR 231 A O VAL 227 A O VAL 230 A N TRP 215 A N TRP 218 A O THR 208 A O THR 211 A N CYS 201 A N CYS 204 A O VAL 200 A O VAL 203 A N GLU 137 A N GLU 136 A N CYS 136 A N CYS 135 A O VAL 160 A O VAL 159 A N ILE 33 A N ILE 18 A O VAL 41 A O VAL 30 A N SER 45 A N SER 34 A O ILE 53 A O ILE 42 A N SER 54 A N SER 43 A O ALA 104 A O ALA 99 A O LEU 105 A O LEU 100 A N ILE 89 A N ILE 82 A O PHE 83 A O PHE 76 A N VAL 66 A N VAL 59 A O ILE 65 A O ILE 58 A N TYR 34 A N TYR 19 1 A HIS 37 A HIS 22 1 Y A 1 A ARG 37 A ARG 23 1 Y B 1 A GLY 37 A GLY 24 1 Y C 1 A GLY 37 A GLY 25 1 Y 1 A ASP 97 A ASP 90 1 Y A 1 A THR 97 A THR 91 1 Y 1 A GLU 244 A GLU 247 1 Y 1 A GLU 245 A GLU 248 1 Y 1 A ASN 246 A ASN 249 1 Y 1 A GLY 247 A GLY 250 1 Y 1 A LEU 248 A LEU 251 1 Y 1 A ALA 249 A ALA 252 1 Y 1 A LEU 250 A LEU 253 1 Y B 1 A A CB O LEU HOH 97 330 0.62 B 1 A A CG O LEU HOH 97 330 0.98 D 1 A A O CA SER VAL 37 38 1.61 D 1 A A O N SER VAL 37 38 1.62 D 1 A A O C SER VAL 37 38 1.68 B 1 A A N CD2 LEU HIS 97 99 1.71 1 A A O N ALA HIS 98 99 1.72 1 A A O N SER ALA 95 96 1.73 B 1 A A CD2 O LEU HOH 97 330 1.89 B 1 A A CA O LEU HOH 97 330 1.99 B 1 A A CD1 O LEU HOH 97 330 2.15 D 1 A SER 37 -16.36 1 A SER 95 -19.69 1 A ALA 98 -25.80 D 1 A A SER VAL 37 38 143.02 B 1 A A LEU ALA 97 98 -131.74 1 A A ALA HIS 98 99 120.19 D D D 1 -16.94 2.70 111.00 94.06 A A A N CA C SER SER SER 37 37 37 N D D 1 34.22 2.20 117.20 151.42 A A A CA C N SER SER VAL 37 37 38 Y D D 1 -39.33 1.60 122.70 83.37 A A A O C N SER SER VAL 37 37 38 Y 1 30.02 2.20 117.20 147.22 A A A CA C N SER SER ALA 95 95 96 Y 1 -33.12 1.60 122.70 89.58 A A A O C N SER SER ALA 95 95 96 Y 1 53.42 2.50 121.70 175.12 A A A C N CA SER ALA ALA 95 96 96 Y B B 1 -17.51 2.20 117.20 99.69 A A A CA C N LEU LEU ALA 97 97 98 Y B B 1 16.30 1.60 122.70 139.00 A A A O C N LEU LEU ALA 97 97 98 Y 1 33.56 2.20 117.20 150.76 A A A CA C N ALA ALA HIS 98 98 99 Y 1 -39.84 1.60 122.70 82.86 A A A O C N ALA ALA HIS 98 98 99 Y 1 29.81 2.50 121.70 151.51 A A A C N CA ALA HIS HIS 98 99 99 Y 1 A VAL 38 52.33 76.43 1 A SER 54 -149.91 -151.62 1 A ALA 98 26.37 56.50 1 A HIS 99 -18.83 106.89 1 A SER 115 -165.48 -169.14 1 A TYR 171 -105.50 -113.75 1 A ASP 189 178.99 172.47 1 A SER 232 -69.26 5.68 PROTEIN_REP.PARAM PROTEIN.TOP TEMP.DUMMY CARBOHYDRATE.PARAM WATER_REP.PARAM ION.PARAM 24.40 -5.25000 -0.92000 0.00000 -5.25000 0.00000 10.50000 0.261 0.008 0.218 0.218 2.15 60.24 1027 12396 8.300 100.0 RANDOM 2268857.230 0.0000 1 RESTRAINED THROUGHOUT 0.000 MOLECULAR REPLACEMENT PDB ENTRY 1F5K FLAT MODEL 45.9508 0.380482 0.32 0.25 5.00 0.29 0.22 2.15 60.24 133 2133 0 0 2000 0.014 2.80 25.60 2.04 1.460 1.500 2.340 2.000 1.980 2.000 2.830 2.500 1 CONSTR 1 X-RAY DIFFRACTION 0.2680 2.28 2059 6 100.00 11.10 2.150 60.240 2NWN 16947 2.000 2.000 0.12330 0.12610 1 5.8300 6.890 99.64 0.44000 2.15 2.28 1.940 6.89 99.8 refinement CNS 1.1 data collection PROTEUM PLUS PLUS data reduction PROTEUM PLUS PLUS data scaling SCALEPACK phasing CNS New Pharmacophore for Serine Protease Inhibition Revealed by Crystal Structure of Human Urokinase-type Plasminogen Activator Complexed with a Cyclic Peptidyl Inhibitor, upain-1 1 N N 2 N N 3 N N 3 N N A THR 23 A THR 8 HELX_P A GLN 27 A GLN 12 5 1 5 A ALA 55 A ALA 44 HELX_P A PHE 59 A PHE 48 5 2 5 A LYS 61 A LYS 53 HELX_P A GLU 62 A GLU 55 5 3 3 A A SER 164 A SER 163 HELX_P A GLN 170 A GLN 169 1 4 7 A PHE 234 A PHE 237 HELX_P A THR 242 A THR 245 1 5 9 disulf 2.026 A CYS 42 A SG CYS 31 1_555 A CYS 58 A SG CYS 47 1_555 disulf 2.025 A CYS 50 A SG CYS 39 1_555 A CYS 111 A SG CYS 110 1_555 disulf 2.035 A CYS 136 A SG CYS 135 1_555 A CYS 201 A SG CYS 204 1_555 disulf 2.019 A CYS 168 A SG CYS 167 1_555 A CYS 182 A SG CYS 183 1_555 disulf 2.025 A CYS 191 A SG CYS 194 1_555 A CYS 220 A SG CYS 222 1_555 disulf 2.027 B CYS 1 B SG CYS 1 1_555 B CYS 12 B SG CYS 12 1_555 HYDROLASE urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, Structural Genomics, Structural Genomics Consortium, SGC, HYDROLASE Q53XS3_HUMAN UNP 1 179 Q53XS3 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHTKEENGLAL 2NWN PDB 2 1 2NWN CSWRGLENHRMC 179 431 2NWN 16 250 Q53XS3 A 1 1 253 1 12 2NWN 1 12 2NWN B 2 1 12 1 CYS engineered mutation ALA 122 2NWN A Q53XS3 UNP 299 121 1 ASN engineered mutation GLN 145 2NWN A Q53XS3 UNP 322 144 8 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLU 20 A GLU 5 A PHE 21 A PHE 6 A LYS 156 A LYS 155 A ILE 163 A ILE 162 A MET 180 A MET 181 A ALA 184 A ALA 185 A LYS 224 A LYS 227 A ARG 230 A ARG 233 A MET 207 A MET 210 A LEU 222 A LEU 224 A PRO 198 A PRO 201 A SER 202 A SER 205 A SER 135 A SER 134 A GLY 140 A GLY 139 A LYS 156 A LYS 155 A ILE 163 A ILE 162 A PHE 30 A PHE 15 A ARG 35 A ARG 20 A THR 39 A THR 28 A SER 48 A SER 37 A TRP 51 A TRP 40 A SER 54 A SER 43 A ALA 104 A ALA 99 A ARG 109 A ARG 104 A MET 81 A MET 74 A LEU 90 A LEU 83 A TYR 64 A TYR 57 A LEU 68 A LEU 61 A PHE 30 A PHE 15 A ARG 35 A ARG 20 146 H 3