1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Bruncko, M.
Oost, T.K.
Belli, B.A.
Ding, H.
Joseph, M.K.
Kunzer, A.
Martineau, D.
McClellan, W.J.
Mitten, M.
Ng, S.C.
Nimmer, P.M.
Oltersdorf, T.
Park, C.M.
Petros, A.M.
Shoemaker, A.R.
Song, X.
Wang, X.
Wendt, M.D.
Zhang, H.
Fesik, S.W.
Rosenberg, S.H.
Elmore, S.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C36 H40 N4 O6 S2
688.856
4-(4-BENZYL-4-METHOXYPIPERIDIN-1-YL)-N-[(4-{[1,1-DIMETHYL-2-(PHENYLTHIO)ETHYL]AMINO}-3-NITROPHENYL)SULFONYL]BENZAMIDE
non-polymer
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
N
N
207
N
C
Y
208
N
C
Y
209
N
C
Y
210
N
C
Y
211
N
C
N
212
N
C
N
213
N
O
N
214
N
N
N
215
N
S
Y
216
N
C
Y
217
N
C
Y
218
N
C
Y
219
N
C
Y
220
N
C
Y
221
N
C
N
222
N
O
N
223
N
O
N
224
N
N
N
225
N
O
N
226
N
O
N
227
N
N
N
228
N
C
N
229
N
C
N
230
N
S
Y
231
N
C
Y
232
N
C
Y
233
N
C
Y
234
N
C
Y
235
N
C
Y
236
N
C
N
237
N
C
N
238
N
C
Y
239
N
C
Y
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
Y
247
N
C
Y
248
N
C
Y
249
N
C
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
N
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
S
N
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
N
380
N
O
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
R
C
N
394
N
O
N
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
N
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
N
444
N
O
N
445
N
O
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
N
N
458
S
C
N
459
N
C
N
460
N
O
N
461
N
C
N
462
N
C
N
463
N
C
N
464
N
O
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
Y
209
N
sing
Y
210
N
doub
Y
211
N
doub
N
212
N
sing
Y
213
N
doub
Y
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
doub
Y
225
N
doub
Y
226
N
sing
Y
227
N
sing
N
228
N
sing
N
229
N
sing
Y
230
N
doub
N
231
N
sing
Y
232
N
sing
Y
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
Y
247
N
doub
Y
248
N
sing
N
249
N
sing
Y
250
N
sing
Y
251
N
doub
N
252
N
sing
Y
253
N
sing
N
254
N
sing
Y
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
Y
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
Y
273
N
sing
Y
274
N
doub
N
275
N
sing
Y
276
N
doub
N
277
N
sing
Y
278
N
sing
N
279
N
sing
Y
280
N
doub
Y
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
doub
N
343
N
sing
Y
344
N
doub
N
345
N
sing
Y
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
Y
407
N
doub
Y
408
N
sing
Y
409
N
sing
N
410
N
sing
Y
411
N
doub
Y
412
N
sing
Y
413
N
sing
N
414
N
sing
Y
415
N
sing
Y
416
N
doub
N
417
N
sing
Y
418
N
doub
N
419
N
sing
Y
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
Y
435
N
doub
Y
436
N
sing
Y
437
N
sing
N
438
N
sing
Y
439
N
doub
N
440
N
sing
Y
441
N
doub
N
442
N
sing
Y
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
doub
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
50
641
662
10.1021/jm061152t
17256834
Studies Leading to Potent, Dual Inhibitors of Bcl-2 and Bcl-xL.
2007
10.2210/pdb2o2f/pdb
pdb_00002o2f
1
SINGLE WAVELENGTH
M
1
1.0
16366.402
Apoptosis regulator Bcl-2
1
man
polymer
688.856
4-(4-BENZYL-4-METHOXYPIPERIDIN-1-YL)-N-[(4-{[1,1-DIMETHYL-2-(PHENYLTHIO)ETHYL]AMINO}-3-NITROPHENYL)SULFONYL]BENZAMIDE
1
syn
non-polymer
no
no
GYDNREIVMKYIHYKLSQRGYEWDEVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGR
IVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGP
GYDNREIVMKYIHYKLSQRGYEWDEVVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGR
IVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVELYGP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
BCL2
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pET28b
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
1
0
2007-02-27
1
1
2008-05-01
1
2
2011-07-13
1
3
2022-03-16
1
4
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2006-11-29
REL
LI0
4-(4-BENZYL-4-METHOXYPIPERIDIN-1-YL)-N-[(4-{[1,1-DIMETHYL-2-(PHENYLTHIO)ETHYL]AMINO}-3-NITROPHENYL)SULFONYL]BENZAMIDE
1
3D_13C-SEPARATED_NOESY
25 mM TRIS; 150 mM sodium chloride
8.0
1
atm
298
K
simulated annealing
1
average-minimized
25mM TRIS buffer; 150 mM sodium chloride; 90% H2O, 10% D2O
90% H2O/10% D2O
Brunger A. T. etall
refinement
CNS
600
Bruker
DRX
800
Bruker
DRX
LI0
1000
2
LI0
LI0
1000
A
GLY
6
n
1
GLY
6
A
TYR
7
n
2
TYR
7
A
ASP
8
n
3
ASP
8
A
ASN
9
n
4
ASN
9
A
ARG
10
n
5
ARG
10
A
GLU
11
n
6
GLU
11
A
ILE
12
n
7
ILE
12
A
VAL
13
n
8
VAL
13
A
MET
14
n
9
MET
14
A
LYS
15
n
10
LYS
15
A
TYR
16
n
11
TYR
16
A
ILE
17
n
12
ILE
17
A
HIS
18
n
13
HIS
18
A
TYR
19
n
14
TYR
19
A
LYS
20
n
15
LYS
20
A
LEU
21
n
16
LEU
21
A
SER
22
n
17
SER
22
A
GLN
23
n
18
GLN
23
A
ARG
24
n
19
ARG
24
A
GLY
25
n
20
GLY
25
A
TYR
26
n
21
TYR
26
A
GLU
27
n
22
GLU
27
A
TRP
28
n
23
TRP
28
A
ASP
29
n
24
ASP
29
A
GLU
48
n
25
GLU
48
A
VAL
89
n
26
VAL
89
A
VAL
90
n
27
VAL
90
A
HIS
91
n
28
HIS
91
A
LEU
92
n
29
LEU
92
A
THR
93
n
30
THR
93
A
LEU
94
n
31
LEU
94
A
ARG
95
n
32
ARG
95
A
GLN
96
n
33
GLN
96
A
ALA
97
n
34
ALA
97
A
GLY
98
n
35
GLY
98
A
ASP
99
n
36
ASP
99
A
ASP
100
n
37
ASP
100
A
PHE
101
n
38
PHE
101
A
SER
102
n
39
SER
102
A
ARG
103
n
40
ARG
103
A
ARG
104
n
41
ARG
104
A
TYR
105
n
42
TYR
105
A
ARG
106
n
43
ARG
106
A
ARG
107
n
44
ARG
107
A
ASP
108
n
45
ASP
108
A
PHE
109
n
46
PHE
109
A
ALA
110
n
47
ALA
110
A
GLU
111
n
48
GLU
111
A
MET
112
n
49
MET
112
A
SER
113
n
50
SER
113
A
SER
114
n
51
SER
114
A
GLN
115
n
52
GLN
115
A
LEU
116
n
53
LEU
116
A
HIS
117
n
54
HIS
117
A
LEU
118
n
55
LEU
118
A
THR
119
n
56
THR
119
A
PRO
120
n
57
PRO
120
A
PHE
121
n
58
PHE
121
A
THR
122
n
59
THR
122
A
ALA
123
n
60
ALA
123
A
ARG
124
n
61
ARG
124
A
GLY
125
n
62
GLY
125
A
ARG
126
n
63
ARG
126
A
PHE
127
n
64
PHE
127
A
ALA
128
n
65
ALA
128
A
THR
129
n
66
THR
129
A
VAL
130
n
67
VAL
130
A
VAL
131
n
68
VAL
131
A
GLU
132
n
69
GLU
132
A
GLU
133
n
70
GLU
133
A
LEU
134
n
71
LEU
134
A
PHE
135
n
72
PHE
135
A
ARG
136
n
73
ARG
136
A
ASP
137
n
74
ASP
137
A
GLY
138
n
75
GLY
138
A
VAL
139
n
76
VAL
139
A
ASN
140
n
77
ASN
140
A
TRP
141
n
78
TRP
141
A
GLY
142
n
79
GLY
142
A
ARG
143
n
80
ARG
143
A
ILE
144
n
81
ILE
144
A
VAL
145
n
82
VAL
145
A
ALA
146
n
83
ALA
146
A
PHE
147
n
84
PHE
147
A
PHE
148
n
85
PHE
148
A
GLU
149
n
86
GLU
149
A
PHE
150
n
87
PHE
150
A
GLY
151
n
88
GLY
151
A
GLY
152
n
89
GLY
152
A
VAL
153
n
90
VAL
153
A
MET
154
n
91
MET
154
A
CYS
155
n
92
CYS
155
A
VAL
156
n
93
VAL
156
A
GLU
157
n
94
GLU
157
A
SER
158
n
95
SER
158
A
VAL
159
n
96
VAL
159
A
ASN
160
n
97
ASN
160
A
ARG
161
n
98
ARG
161
A
GLU
162
n
99
GLU
162
A
MET
163
n
100
MET
163
A
SER
164
n
101
SER
164
A
PRO
165
n
102
PRO
165
A
LEU
166
n
103
LEU
166
A
VAL
167
n
104
VAL
167
A
ASP
168
n
105
ASP
168
A
ASN
169
n
106
ASN
169
A
ILE
170
n
107
ILE
170
A
ALA
171
n
108
ALA
171
A
LEU
172
n
109
LEU
172
A
TRP
173
n
110
TRP
173
A
MET
174
n
111
MET
174
A
THR
175
n
112
THR
175
A
GLU
176
n
113
GLU
176
A
TYR
177
n
114
TYR
177
A
LEU
178
n
115
LEU
178
A
ASN
179
n
116
ASN
179
A
ARG
180
n
117
ARG
180
A
HIS
181
n
118
HIS
181
A
LEU
182
n
119
LEU
182
A
HIS
183
n
120
HIS
183
A
THR
184
n
121
THR
184
A
TRP
185
n
122
TRP
185
A
ILE
186
n
123
ILE
186
A
GLN
187
n
124
GLN
187
A
ASP
188
n
125
ASP
188
A
ASN
189
n
126
ASN
189
A
GLY
190
n
127
GLY
190
A
GLY
191
n
128
GLY
191
A
TRP
192
n
129
TRP
192
A
ASP
193
n
130
ASP
193
A
ALA
194
n
131
ALA
194
A
PHE
195
n
132
PHE
195
A
VAL
196
n
133
VAL
196
A
GLU
197
n
134
GLU
197
A
LEU
198
n
135
LEU
198
A
TYR
199
n
136
TYR
199
A
GLY
200
n
137
GLY
200
A
PRO
201
n
138
PRO
201
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ILE
17
-94.10
30.63
1
A
TYR
26
-162.59
-163.39
1
A
TRP
28
75.65
170.91
1
A
ASP
29
-179.50
143.76
1
A
TYR
105
-99.59
54.52
1
A
PHE
121
-47.30
169.05
1
A
PHE
135
-93.69
57.89
1
A
ARG
161
-98.10
32.78
1
A
MET
163
-144.07
40.78
1
A
ARG
180
-166.76
32.62
1
A
HIS
181
-171.40
-57.52
1
A
ASN
189
-95.09
51.26
1
A
LEU
198
-79.56
-70.36
1
A
TYR
199
-107.75
67.67
Solution structure of the anti-apoptotic protein Bcl-2 in complex with an acyl-sulfonamide-based ligand
1
N
N
2
N
N
A
ASP
8
A
ASP
3
HELX_P
A
TYR
16
A
TYR
11
1
1
9
A
HIS
18
A
HIS
13
HELX_P
A
GLN
23
A
GLN
18
1
2
6
A
VAL
90
A
VAL
27
HELX_P
A
TYR
105
A
TYR
42
1
3
16
A
TYR
105
A
TYR
42
HELX_P
A
THR
119
A
THR
56
1
4
15
A
THR
122
A
THR
59
HELX_P
A
PHE
135
A
PHE
72
1
5
14
A
ASN
140
A
ASN
77
HELX_P
A
ARG
161
A
ARG
98
1
6
22
A
GLU
162
A
GLU
99
HELX_P
A
SER
164
A
SER
101
5
7
3
A
PRO
165
A
PRO
102
HELX_P
A
ASN
179
A
ASN
116
1
8
15
A
HIS
181
A
HIS
118
HELX_P
A
ASN
189
A
ASN
126
1
9
9
A
GLY
190
A
GLY
127
HELX_P
A
TYR
199
A
TYR
136
1
10
10
APOPTOSIS
apoptosis, complex, bcl
BCL2_HUMAN
UNP
1
8
P10415
GYDNREIVMKYIHYKLSQRGYEWD
BCL2_HUMAN
UNP
1
92
P10415
VVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVD
NIALWMTEYLNRHLHTWIQDNGGWDAFVELYGP
8
31
2O2F
6
29
P10415
A
1
1
24
92
204
2O2F
89
201
P10415
A
2
26
138
1
cloning artifact
GLU
48
2O2F
A
P10415
UNP
25
BINDING SITE FOR RESIDUE LI0 A 1000
A
LI0
1000
Software
12
A
ALA
97
A
ALA
34
12
1_555
A
ASP
100
A
ASP
37
12
1_555
A
TYR
105
A
TYR
42
12
1_555
A
ASP
108
A
ASP
45
12
1_555
A
MET
112
A
MET
49
12
1_555
A
VAL
130
A
VAL
67
12
1_555
A
LEU
134
A
LEU
71
12
1_555
A
TRP
141
A
TRP
78
12
1_555
A
GLY
142
A
GLY
79
12
1_555
A
VAL
145
A
VAL
82
12
1_555
A
ALA
146
A
ALA
83
12
1_555
A
TYR
199
A
TYR
136
12
1_555