0.010137 0.005852 0.000000 0.000000 0.011705 0.000000 0.000000 0.000000 0.012427 0.00000 0.00000 0.00000 Holder, S. Zemskova, M. Zhang, C. Tabrizizad, M. Bremer, R. Neidigh, J.W. Lilly, M.B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 98.652 98.652 80.472 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C3 H5 N2 1 69.085 IMIDAZOLE non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C15 H10 O7 302.236 5,7-DIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE 2-(3,4,5-TRIHYDROXYPHENYL)-5,7-DIHYDROXY-4H-1-BENZOPYRAN-4-ONE; PENTAHYDROXYFLAVONE non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H Y 183 N N Y 184 N C Y 185 N N Y 186 N C Y 187 N C N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N N N 194 S C N 195 N C N 196 N O N 197 N C N 198 N C N 199 N C N 200 N C N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C N 220 N C N 221 N C N 222 N C N 223 N N N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 N C N 245 N C N 246 N S N 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N O Y 261 N C Y 262 N C Y 263 N C N 264 N O Y 265 N C Y 266 N C N 267 N O Y 268 N C Y 269 N C Y 270 N O Y 271 N C Y 272 N C Y 273 N C Y 274 N C Y 275 N C N 276 N O Y 277 N C N 278 N O Y 279 N C Y 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N N N 293 S C N 294 N C N 295 N O N 296 N C Y 297 N C Y 298 N C Y 299 N C Y 300 N C Y 301 N C Y 302 N C N 303 N O N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 N C N 320 N C N 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N N N 333 S C N 334 N C N 335 N O N 336 N C N 337 N O N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N N N 347 S C N 348 N C N 349 N O N 350 R C N 351 N O N 352 N C N 353 N O N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N N Y 372 N C Y 373 N C Y 374 N C Y 375 N C Y 376 N C N 377 N O N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N N N 391 S C N 392 N C N 393 N O N 394 N C Y 395 N C Y 396 N C Y 397 N C Y 398 N C Y 399 N C Y 400 N C N 401 N O N 402 N O N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N N N 415 S C N 416 N C N 417 N O N 418 N C N 419 N C N 420 N C N 421 N O N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing Y 173 N sing Y 174 N sing N 175 N sing Y 176 N doub N 177 N sing Y 178 N sing N 179 N sing Y 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub Y 248 N sing Y 249 N sing Y 250 N sing Y 251 N doub N 252 N sing Y 253 N doub N 254 N sing Y 255 N sing N 256 N sing N 257 N sing Y 258 N doub N 259 N sing Y 260 N sing Y 261 N sing N 262 N sing Y 263 N sing Y 264 N doub Y 265 N sing N 266 N sing Y 267 N doub Y 268 N sing Y 269 N sing N 270 N sing N 271 N sing Y 272 N doub N 273 N sing Y 274 N sing N 275 N sing N 276 N sing Y 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing Y 292 N doub Y 293 N sing Y 294 N sing N 295 N sing Y 296 N doub N 297 N sing Y 298 N doub N 299 N sing Y 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N sing N 358 N sing N 359 N sing N 360 N sing Y 361 N doub Y 362 N sing Y 363 N sing N 364 N sing Y 365 N doub Y 366 N sing Y 367 N sing N 368 N sing Y 369 N sing Y 370 N doub N 371 N sing Y 372 N doub N 373 N sing Y 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N doub N 385 N sing N 386 N sing N 387 N sing N 388 N sing Y 389 N doub Y 390 N sing Y 391 N sing N 392 N sing Y 393 N doub N 394 N sing Y 395 N doub N 396 N sing Y 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N doub N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing US Mol.Cancer Ther. 1535-7163 6 163 172 10.1158/1535-7163.MCT-06-0397 17218638 Characterization of a potent and selective small-molecule inhibitor of the PIM1 kinase. 2007 10.2210/pdb2o65/pdb pdb_00002o65 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD ADSC QUANTUM 210 SINGLE WAVELENGTH M x-ray 1 1.10000 1.0 8.3.1 ALS 1.10000 SYNCHROTRON ALS BEAMLINE 8.3.1 33832.320 Proto-oncogene serine/threonine-protein kinase Pim-1 2.7.11.1 CATALYTIC DOMAIN 1 man polymer 69.085 IMIDAZOLE 1 syn non-polymer 302.236 5,7-DIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE 1 syn non-polymer 18.015 water 25 nat water no no KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD WFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIR WCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSKVDHHHHHH KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD WFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIR WCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSKVDHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample PIM1 9606 Homo sapiens 562 Escherichia coli 1 3.34 63.17 VAPOR DIFFUSION, SITTING DROP 6.5 NA ACETATE, IMIDAZOLE, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2007-02-13 1 1 2008-05-01 1 2 2011-07-13 1 3 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Crystal structure of Pim1 with Quercetin Crystal structure of Pim1 with Myricetin Crystal structure of Pim1 with Quercetagetin RCSB Y RCSB 2006-12-06 REL IMD IMIDAZOLE MYF 5,7-DIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE HOH water IMD 1 2 IMD IMD 401 A MYF 1 3 MYF MYF 501 A HOH 1 4 HOH HOH 1 A HOH 2 4 HOH HOH 2 A HOH 3 4 HOH HOH 3 A HOH 4 4 HOH HOH 4 A HOH 5 4 HOH HOH 5 A HOH 6 4 HOH HOH 6 A HOH 7 4 HOH HOH 7 A HOH 8 4 HOH HOH 8 A HOH 9 4 HOH HOH 9 A HOH 10 4 HOH HOH 10 A HOH 11 4 HOH HOH 11 A HOH 12 4 HOH HOH 12 A HOH 13 4 HOH HOH 13 A HOH 14 4 HOH HOH 14 A HOH 15 4 HOH HOH 15 A HOH 16 4 HOH HOH 16 A HOH 17 4 HOH HOH 17 A HOH 18 4 HOH HOH 18 A HOH 19 4 HOH HOH 19 A HOH 20 4 HOH HOH 20 A HOH 21 4 HOH HOH 21 A HOH 22 4 HOH HOH 22 A HOH 23 4 HOH HOH 23 A HOH 24 4 HOH HOH 24 A HOH 25 4 HOH HOH 25 A n 1 29 A n 2 30 A n 3 31 A n 4 32 A PRO 33 n 5 PRO 33 A LEU 34 n 6 LEU 34 A GLU 35 n 7 GLU 35 A SER 36 n 8 SER 36 A GLN 37 n 9 GLN 37 A TYR 38 n 10 TYR 38 A GLN 39 n 11 GLN 39 A VAL 40 n 12 VAL 40 A GLY 41 n 13 GLY 41 A PRO 42 n 14 PRO 42 A LEU 43 n 15 LEU 43 A LEU 44 n 16 LEU 44 A GLY 45 n 17 GLY 45 A SER 46 n 18 SER 46 A GLY 47 n 19 GLY 47 A GLY 48 n 20 GLY 48 A PHE 49 n 21 PHE 49 A GLY 50 n 22 GLY 50 A SER 51 n 23 SER 51 A VAL 52 n 24 VAL 52 A TYR 53 n 25 TYR 53 A SER 54 n 26 SER 54 A GLY 55 n 27 GLY 55 A ILE 56 n 28 ILE 56 A ARG 57 n 29 ARG 57 A VAL 58 n 30 VAL 58 A SER 59 n 31 SER 59 A ASP 60 n 32 ASP 60 A ASN 61 n 33 ASN 61 A LEU 62 n 34 LEU 62 A PRO 63 n 35 PRO 63 A VAL 64 n 36 VAL 64 A ALA 65 n 37 ALA 65 A ILE 66 n 38 ILE 66 A LYS 67 n 39 LYS 67 A HIS 68 n 40 HIS 68 A VAL 69 n 41 VAL 69 A GLU 70 n 42 GLU 70 A LYS 71 n 43 LYS 71 A ASP 72 n 44 ASP 72 A ARG 73 n 45 ARG 73 A ILE 74 n 46 ILE 74 A SER 75 n 47 SER 75 A ASP 76 n 48 ASP 76 A TRP 77 n 49 TRP 77 A GLY 78 n 50 GLY 78 A GLU 79 n 51 GLU 79 A LEU 80 n 52 LEU 80 A PRO 81 n 53 PRO 81 A ASN 82 n 54 ASN 82 A GLY 83 n 55 GLY 83 A THR 84 n 56 THR 84 A ARG 85 n 57 ARG 85 A VAL 86 n 58 VAL 86 A PRO 87 n 59 PRO 87 A MET 88 n 60 MET 88 A GLU 89 n 61 GLU 89 A VAL 90 n 62 VAL 90 A VAL 91 n 63 VAL 91 A LEU 92 n 64 LEU 92 A LEU 93 n 65 LEU 93 A LYS 94 n 66 LYS 94 A LYS 95 n 67 LYS 95 A VAL 96 n 68 VAL 96 A SER 97 n 69 SER 97 A SER 98 n 70 SER 98 A GLY 99 n 71 GLY 99 A PHE 100 n 72 PHE 100 A SER 101 n 73 SER 101 A GLY 102 n 74 GLY 102 A VAL 103 n 75 VAL 103 A ILE 104 n 76 ILE 104 A ARG 105 n 77 ARG 105 A LEU 106 n 78 LEU 106 A LEU 107 n 79 LEU 107 A ASP 108 n 80 ASP 108 A TRP 109 n 81 TRP 109 A PHE 110 n 82 PHE 110 A GLU 111 n 83 GLU 111 A ARG 112 n 84 ARG 112 A PRO 113 n 85 PRO 113 A ASP 114 n 86 ASP 114 A SER 115 n 87 SER 115 A PHE 116 n 88 PHE 116 A VAL 117 n 89 VAL 117 A LEU 118 n 90 LEU 118 A ILE 119 n 91 ILE 119 A LEU 120 n 92 LEU 120 A GLU 121 n 93 GLU 121 A ARG 122 n 94 ARG 122 A PRO 123 n 95 PRO 123 A GLU 124 n 96 GLU 124 A PRO 125 n 97 PRO 125 A VAL 126 n 98 VAL 126 A GLN 127 n 99 GLN 127 A ASP 128 n 100 ASP 128 A LEU 129 n 101 LEU 129 A PHE 130 n 102 PHE 130 A ASP 131 n 103 ASP 131 A PHE 132 n 104 PHE 132 A ILE 133 n 105 ILE 133 A THR 134 n 106 THR 134 A GLU 135 n 107 GLU 135 A ARG 136 n 108 ARG 136 A GLY 137 n 109 GLY 137 A ALA 138 n 110 ALA 138 A LEU 139 n 111 LEU 139 A GLN 140 n 112 GLN 140 A GLU 141 n 113 GLU 141 A GLU 142 n 114 GLU 142 A LEU 143 n 115 LEU 143 A ALA 144 n 116 ALA 144 A ARG 145 n 117 ARG 145 A SER 146 n 118 SER 146 A PHE 147 n 119 PHE 147 A PHE 148 n 120 PHE 148 A TRP 149 n 121 TRP 149 A GLN 150 n 122 GLN 150 A VAL 151 n 123 VAL 151 A LEU 152 n 124 LEU 152 A GLU 153 n 125 GLU 153 A ALA 154 n 126 ALA 154 A VAL 155 n 127 VAL 155 A ARG 156 n 128 ARG 156 A HIS 157 n 129 HIS 157 A CYS 158 n 130 CYS 158 A HIS 159 n 131 HIS 159 A ASN 160 n 132 ASN 160 A CYS 161 n 133 CYS 161 A GLY 162 n 134 GLY 162 A VAL 163 n 135 VAL 163 A LEU 164 n 136 LEU 164 A HIS 165 n 137 HIS 165 A ARG 166 n 138 ARG 166 A ASP 167 n 139 ASP 167 A ILE 168 n 140 ILE 168 A LYS 169 n 141 LYS 169 A ASP 170 n 142 ASP 170 A GLU 171 n 143 GLU 171 A ASN 172 n 144 ASN 172 A ILE 173 n 145 ILE 173 A LEU 174 n 146 LEU 174 A ILE 175 n 147 ILE 175 A ASP 176 n 148 ASP 176 A LEU 177 n 149 LEU 177 A ASN 178 n 150 ASN 178 A ARG 179 n 151 ARG 179 A GLY 180 n 152 GLY 180 A GLU 181 n 153 GLU 181 A LEU 182 n 154 LEU 182 A LYS 183 n 155 LYS 183 A LEU 184 n 156 LEU 184 A ILE 185 n 157 ILE 185 A ASP 186 n 158 ASP 186 A PHE 187 n 159 PHE 187 A GLY 188 n 160 GLY 188 A SER 189 n 161 SER 189 A GLY 190 n 162 GLY 190 A ALA 191 n 163 ALA 191 A LEU 192 n 164 LEU 192 A LEU 193 n 165 LEU 193 A LYS 194 n 166 LYS 194 A ASP 195 n 167 ASP 195 A THR 196 n 168 THR 196 A VAL 197 n 169 VAL 197 A TYR 198 n 170 TYR 198 A THR 199 n 171 THR 199 A ASP 200 n 172 ASP 200 A PHE 201 n 173 PHE 201 A ASP 202 n 174 ASP 202 A GLY 203 n 175 GLY 203 A THR 204 n 176 THR 204 A ARG 205 n 177 ARG 205 A VAL 206 n 178 VAL 206 A TYR 207 n 179 TYR 207 A SER 208 n 180 SER 208 A PRO 209 n 181 PRO 209 A PRO 210 n 182 PRO 210 A GLU 211 n 183 GLU 211 A TRP 212 n 184 TRP 212 A ILE 213 n 185 ILE 213 A ARG 214 n 186 ARG 214 A TYR 215 n 187 TYR 215 A HIS 216 n 188 HIS 216 A ARG 217 n 189 ARG 217 A TYR 218 n 190 TYR 218 A HIS 219 n 191 HIS 219 A GLY 220 n 192 GLY 220 A ARG 221 n 193 ARG 221 A SER 222 n 194 SER 222 A ALA 223 n 195 ALA 223 A ALA 224 n 196 ALA 224 A VAL 225 n 197 VAL 225 A TRP 226 n 198 TRP 226 A SER 227 n 199 SER 227 A LEU 228 n 200 LEU 228 A GLY 229 n 201 GLY 229 A ILE 230 n 202 ILE 230 A LEU 231 n 203 LEU 231 A LEU 232 n 204 LEU 232 A TYR 233 n 205 TYR 233 A ASP 234 n 206 ASP 234 A MET 235 n 207 MET 235 A VAL 236 n 208 VAL 236 A CYS 237 n 209 CYS 237 A GLY 238 n 210 GLY 238 A ASP 239 n 211 ASP 239 A ILE 240 n 212 ILE 240 A PRO 241 n 213 PRO 241 A PHE 242 n 214 PHE 242 A GLU 243 n 215 GLU 243 A HIS 244 n 216 HIS 244 A ASP 245 n 217 ASP 245 A GLU 246 n 218 GLU 246 A GLU 247 n 219 GLU 247 A ILE 248 n 220 ILE 248 A ILE 249 n 221 ILE 249 A ARG 250 n 222 ARG 250 A GLY 251 n 223 GLY 251 A GLN 252 n 224 GLN 252 A VAL 253 n 225 VAL 253 A PHE 254 n 226 PHE 254 A PHE 255 n 227 PHE 255 A ARG 256 n 228 ARG 256 A GLN 257 n 229 GLN 257 A ARG 258 n 230 ARG 258 A VAL 259 n 231 VAL 259 A SER 260 n 232 SER 260 A SER 261 n 233 SER 261 A GLU 262 n 234 GLU 262 A CYS 263 n 235 CYS 263 A GLN 264 n 236 GLN 264 A HIS 265 n 237 HIS 265 A LEU 266 n 238 LEU 266 A ILE 267 n 239 ILE 267 A ARG 268 n 240 ARG 268 A TRP 269 n 241 TRP 269 A CYS 270 n 242 CYS 270 A LEU 271 n 243 LEU 271 A ALA 272 n 244 ALA 272 A LEU 273 n 245 LEU 273 A ARG 274 n 246 ARG 274 A PRO 275 n 247 PRO 275 A SER 276 n 248 SER 276 A ASP 277 n 249 ASP 277 A ARG 278 n 250 ARG 278 A PRO 279 n 251 PRO 279 A THR 280 n 252 THR 280 A PHE 281 n 253 PHE 281 A GLU 282 n 254 GLU 282 A GLU 283 n 255 GLU 283 A ILE 284 n 256 ILE 284 A GLN 285 n 257 GLN 285 A ASN 286 n 258 ASN 286 A HIS 287 n 259 HIS 287 A PRO 288 n 260 PRO 288 A TRP 289 n 261 TRP 289 A MET 290 n 262 MET 290 A GLN 291 n 263 GLN 291 A ASP 292 n 264 ASP 292 A VAL 293 n 265 VAL 293 A LEU 294 n 266 LEU 294 A LEU 295 n 267 LEU 295 A PRO 296 n 268 PRO 296 A GLN 297 n 269 GLN 297 A GLU 298 n 270 GLU 298 A THR 299 n 271 THR 299 A ALA 300 n 272 ALA 300 A GLU 301 n 273 GLU 301 A ILE 302 n 274 ILE 302 A HIS 303 n 275 HIS 303 A LEU 304 n 276 LEU 304 A HIS 305 n 277 HIS 305 A SER 306 n 278 SER 306 A n 279 307 A n 280 308 A n 281 309 A n 282 310 A n 283 311 A n 284 312 A n 285 313 A n 286 314 A n 287 315 A n 288 316 A n 289 317 A n 290 318 A n 291 319 A n 292 320 A n 293 321 A 3.3330 0.7799 -0.7404 2.0105 -0.4062 2.6780 -0.0453 0.0923 0.1052 -0.0369 0.1104 -0.0411 0.0013 0.3900 -0.0651 0.0156 -0.0247 -0.0328 0.0632 -0.0449 0.5547 refined 67.4190 27.4790 -0.8430 X-RAY DIFFRACTION A 33 A 5 A 306 A 278 X-RAY DIFFRACTION 1 author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLY 55 A N GLY 27 A O VAL 64 A O VAL 36 A N ALA 65 A N ALA 37 A O LEU 120 A O LEU 92 A O VAL 117 A O VAL 89 A N PHE 110 A N PHE 82 A N GLY 78 A N GLY 50 A O VAL 86 A O VAL 58 A N GLN 127 A N GLN 99 A O ILE 175 A O ILE 147 A N ASP 176 A N ASP 148 A O GLU 181 A O GLU 153 A N LEU 164 A N LEU 136 A O ALA 191 A O ALA 163 1 A LYS 29 A LYS 1 1 Y 1 A GLU 30 A GLU 2 1 Y 1 A LYS 31 A LYS 3 1 Y 1 A GLU 32 A GLU 4 1 Y 1 A LEU 307 A LEU 279 1 Y 1 A SER 308 A SER 280 1 Y 1 A PRO 309 A PRO 281 1 Y 1 A GLY 310 A GLY 282 1 Y 1 A PRO 311 A PRO 283 1 Y 1 A SER 312 A SER 284 1 Y 1 A LYS 313 A LYS 285 1 Y 1 A VAL 314 A VAL 286 1 Y 1 A ASP 315 A ASP 287 1 Y 1 A HIS 316 A HIS 288 1 Y 1 A HIS 317 A HIS 289 1 Y 1 A HIS 318 A HIS 290 1 Y 1 A HIS 319 A HIS 291 1 Y 1 A HIS 320 A HIS 292 1 Y 1 A HIS 321 A HIS 293 1 Y 1 A A OG O SER HOH 222 1 2.12 1 5.46 0.90 118.30 123.76 A A A CB CG OD2 ASP ASP ASP 234 234 234 N 1 A LEU 34 65.40 157.88 1 A PRO 42 -55.71 177.92 1 A ASP 60 -155.57 40.25 1 A ASN 61 45.68 22.53 1 A SER 97 -78.39 -152.66 1 A SER 98 66.19 106.61 1 A SER 101 29.65 179.18 1 A ARG 166 70.03 -4.07 1 A ASP 167 -140.15 41.45 1 A ASP 186 60.08 89.22 1 A ASP 202 -142.66 34.64 20.701 5.80 2.90 0.00 5.80 0.00 -8.70 0.929 0.892 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.26166 0.20768 0.21034 0.21034 2.85 84.51 501 9976 9976 4.8 99.79 18.357 0.326 RANDOM 1 THROUGHOUT 0 0 MOLECULAR REPLACEMENT 0.991 0.363 0.80 0.80 1.40 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 0.326 0.363 2.85 84.51 25 2282 27 0 2230 0.013 0.021 2320 0.002 0.020 2081 1.545 1.957 3150 0.868 3.000 4817 2.949 5.000 273 0.094 0.200 332 0.005 0.020 2585 0.003 0.020 508 0.211 0.200 511 0.220 0.200 2437 0.087 0.200 1416 0.245 0.200 39 0.112 0.200 13 0.219 0.200 60 0.131 0.200 6 0.427 1.500 1365 0.820 2.000 2212 1.091 3.000 955 1.953 4.500 938 0.336 0.328 2.92 36 737 3799 20 100 2.85 84.51 2O65 9976 9976 0 0 0.138 1 5.1 4.9 99.79 0.776 2.85 2.92 1.6 3799 4.9 100 refinement REFMAC 5.1.25 data collection Blu-Ice data reduction MOSFLM data scaling CCP4 (SCALA) phasing CCP4 Crystal structure of Pim1 with Pentahydroxyflavone 1 N N 2 N N 3 N N 4 N N A MET 88 A MET 60 HELX_P A SER 97 A SER 69 1 1 10 A LEU 129 A LEU 101 HELX_P A GLY 137 A GLY 109 1 2 9 A GLN 140 A GLN 112 HELX_P A GLY 162 A GLY 134 1 3 23 A LYS 169 A LYS 141 HELX_P A GLU 171 A GLU 143 5 4 3 A THR 204 A THR 176 HELX_P A SER 208 A SER 180 5 5 5 A PRO 209 A PRO 181 HELX_P A HIS 216 A HIS 188 1 6 8 A HIS 219 A HIS 191 HELX_P A GLY 238 A GLY 210 1 7 20 A HIS 244 A HIS 216 HELX_P A GLY 251 A GLY 223 1 8 8 A SER 260 A SER 232 HELX_P A LEU 271 A LEU 243 1 9 12 A ARG 274 A ARG 246 HELX_P A ARG 278 A ARG 250 5 10 5 A THR 280 A THR 252 HELX_P A HIS 287 A HIS 259 1 11 8 A PRO 288 A PRO 260 HELX_P A GLN 291 A GLN 263 5 12 4 A LEU 295 A LEU 267 HELX_P A LEU 304 A LEU 276 1 13 10 TRANSFERASE Pim1, Pentahydroxyflavone, TRANSFERASE A GLU 124 A GLU 96 1 A PRO 125 A PRO 97 -1.37 PIM1_HUMAN UNP 1 120 P11309 KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD WFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIR WCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK 120 404 2O65 29 313 P11309 A 1 1 285 1 cloning artifact VAL 314 2O65 A P11309 UNP 286 1 cloning artifact ASP 315 2O65 A P11309 UNP 287 1 cloning artifact HIS 316 2O65 A P11309 UNP 288 1 cloning artifact HIS 317 2O65 A P11309 UNP 289 1 cloning artifact HIS 318 2O65 A P11309 UNP 290 1 cloning artifact HIS 319 2O65 A P11309 UNP 291 1 cloning artifact HIS 320 2O65 A P11309 UNP 292 1 cloning artifact HIS 321 2O65 A P11309 UNP 293 4 2 3 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A SER 51 A SER 23 A ARG 57 A ARG 29 A LEU 62 A LEU 34 A GLU 70 A GLU 42 A SER 115 A SER 87 A GLU 121 A GLU 93 A LEU 106 A LEU 78 A ARG 112 A ARG 84 A TRP 77 A TRP 49 A GLU 79 A GLU 51 A ARG 85 A ARG 57 A PRO 87 A PRO 59 A VAL 126 A VAL 98 A ASP 128 A ASP 100 A ILE 173 A ILE 145 A ASP 176 A ASP 148 A GLU 181 A GLU 153 A LEU 184 A LEU 156 A VAL 163 A VAL 135 A LEU 164 A LEU 136 A ALA 191 A ALA 163 A LEU 192 A LEU 164 BINDING SITE FOR RESIDUE IMD A 401 A IMD 401 Software 7 BINDING SITE FOR RESIDUE MYF A 501 A MYF 501 Software 7 A PHE 130 A PHE 102 7 1_555 A ILE 133 A ILE 105 7 1_555 A THR 134 A THR 106 7 1_555 A ASP 170 A ASP 142 7 1_555 A ASP 234 A ASP 206 7 1_555 A GLY 238 A GLY 210 7 1_555 A ASP 239 A ASP 211 7 1_555 A HOH 3 D HOH 7 1_555 A LEU 44 A LEU 16 7 1_555 A PHE 49 A PHE 21 7 1_555 A VAL 52 A VAL 24 7 1_555 A LYS 67 A LYS 39 7 1_555 A LEU 120 A LEU 92 7 1_555 A ASP 186 A ASP 158 7 1_555 170 P 65