0.010137
0.005852
0.000000
0.000000
0.011705
0.000000
0.000000
0.000000
0.012427
0.00000
0.00000
0.00000
Holder, S.
Zemskova, M.
Zhang, C.
Tabrizizad, M.
Bremer, R.
Neidigh, J.W.
Lilly, M.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
98.652
98.652
80.472
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C3 H5 N2 1
69.085
IMIDAZOLE
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C15 H10 O7
302.236
5,7-DIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE
2-(3,4,5-TRIHYDROXYPHENYL)-5,7-DIHYDROXY-4H-1-BENZOPYRAN-4-ONE; PENTAHYDROXYFLAVONE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
Y
183
N
N
Y
184
N
C
Y
185
N
N
Y
186
N
C
Y
187
N
C
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
N
N
194
S
C
N
195
N
C
N
196
N
O
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
N
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
N
245
N
C
N
246
N
S
N
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
O
Y
261
N
C
Y
262
N
C
Y
263
N
C
N
264
N
O
Y
265
N
C
Y
266
N
C
N
267
N
O
Y
268
N
C
Y
269
N
C
Y
270
N
O
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
N
276
N
O
Y
277
N
C
N
278
N
O
Y
279
N
C
Y
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
N
337
N
O
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
R
C
N
351
N
O
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
N
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
N
419
N
C
N
420
N
C
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
sing
N
175
N
sing
Y
176
N
doub
N
177
N
sing
Y
178
N
sing
N
179
N
sing
Y
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
Y
248
N
sing
Y
249
N
sing
Y
250
N
sing
Y
251
N
doub
N
252
N
sing
Y
253
N
doub
N
254
N
sing
Y
255
N
sing
N
256
N
sing
N
257
N
sing
Y
258
N
doub
N
259
N
sing
Y
260
N
sing
Y
261
N
sing
N
262
N
sing
Y
263
N
sing
Y
264
N
doub
Y
265
N
sing
N
266
N
sing
Y
267
N
doub
Y
268
N
sing
Y
269
N
sing
N
270
N
sing
N
271
N
sing
Y
272
N
doub
N
273
N
sing
Y
274
N
sing
N
275
N
sing
N
276
N
sing
Y
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
Y
292
N
doub
Y
293
N
sing
Y
294
N
sing
N
295
N
sing
Y
296
N
doub
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
Y
389
N
doub
Y
390
N
sing
Y
391
N
sing
N
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
US
Mol.Cancer Ther.
1535-7163
6
163
172
10.1158/1535-7163.MCT-06-0397
17218638
Characterization of a potent and selective small-molecule inhibitor of the PIM1 kinase.
2007
10.2210/pdb2o65/pdb
pdb_00002o65
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
ADSC QUANTUM 210
SINGLE WAVELENGTH
M
x-ray
1
1.10000
1.0
8.3.1
ALS
1.10000
SYNCHROTRON
ALS BEAMLINE 8.3.1
33832.320
Proto-oncogene serine/threonine-protein kinase Pim-1
2.7.11.1
CATALYTIC DOMAIN
1
man
polymer
69.085
IMIDAZOLE
1
syn
non-polymer
302.236
5,7-DIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE
1
syn
non-polymer
18.015
water
25
nat
water
no
no
KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD
WFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG
SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIR
WCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSKVDHHHHHH
KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD
WFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG
SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIR
WCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSKVDHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
PIM1
9606
Homo sapiens
562
Escherichia coli
1
3.34
63.17
VAPOR DIFFUSION, SITTING DROP
6.5
NA ACETATE, IMIDAZOLE, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2007-02-13
1
1
2008-05-01
1
2
2011-07-13
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of Pim1 with Quercetin
Crystal structure of Pim1 with Myricetin
Crystal structure of Pim1 with Quercetagetin
RCSB
Y
RCSB
2006-12-06
REL
IMD
IMIDAZOLE
MYF
5,7-DIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE
HOH
water
IMD
1
2
IMD
IMD
401
A
MYF
1
3
MYF
MYF
501
A
HOH
1
4
HOH
HOH
1
A
HOH
2
4
HOH
HOH
2
A
HOH
3
4
HOH
HOH
3
A
HOH
4
4
HOH
HOH
4
A
HOH
5
4
HOH
HOH
5
A
HOH
6
4
HOH
HOH
6
A
HOH
7
4
HOH
HOH
7
A
HOH
8
4
HOH
HOH
8
A
HOH
9
4
HOH
HOH
9
A
HOH
10
4
HOH
HOH
10
A
HOH
11
4
HOH
HOH
11
A
HOH
12
4
HOH
HOH
12
A
HOH
13
4
HOH
HOH
13
A
HOH
14
4
HOH
HOH
14
A
HOH
15
4
HOH
HOH
15
A
HOH
16
4
HOH
HOH
16
A
HOH
17
4
HOH
HOH
17
A
HOH
18
4
HOH
HOH
18
A
HOH
19
4
HOH
HOH
19
A
HOH
20
4
HOH
HOH
20
A
HOH
21
4
HOH
HOH
21
A
HOH
22
4
HOH
HOH
22
A
HOH
23
4
HOH
HOH
23
A
HOH
24
4
HOH
HOH
24
A
HOH
25
4
HOH
HOH
25
A
n
1
29
A
n
2
30
A
n
3
31
A
n
4
32
A
PRO
33
n
5
PRO
33
A
LEU
34
n
6
LEU
34
A
GLU
35
n
7
GLU
35
A
SER
36
n
8
SER
36
A
GLN
37
n
9
GLN
37
A
TYR
38
n
10
TYR
38
A
GLN
39
n
11
GLN
39
A
VAL
40
n
12
VAL
40
A
GLY
41
n
13
GLY
41
A
PRO
42
n
14
PRO
42
A
LEU
43
n
15
LEU
43
A
LEU
44
n
16
LEU
44
A
GLY
45
n
17
GLY
45
A
SER
46
n
18
SER
46
A
GLY
47
n
19
GLY
47
A
GLY
48
n
20
GLY
48
A
PHE
49
n
21
PHE
49
A
GLY
50
n
22
GLY
50
A
SER
51
n
23
SER
51
A
VAL
52
n
24
VAL
52
A
TYR
53
n
25
TYR
53
A
SER
54
n
26
SER
54
A
GLY
55
n
27
GLY
55
A
ILE
56
n
28
ILE
56
A
ARG
57
n
29
ARG
57
A
VAL
58
n
30
VAL
58
A
SER
59
n
31
SER
59
A
ASP
60
n
32
ASP
60
A
ASN
61
n
33
ASN
61
A
LEU
62
n
34
LEU
62
A
PRO
63
n
35
PRO
63
A
VAL
64
n
36
VAL
64
A
ALA
65
n
37
ALA
65
A
ILE
66
n
38
ILE
66
A
LYS
67
n
39
LYS
67
A
HIS
68
n
40
HIS
68
A
VAL
69
n
41
VAL
69
A
GLU
70
n
42
GLU
70
A
LYS
71
n
43
LYS
71
A
ASP
72
n
44
ASP
72
A
ARG
73
n
45
ARG
73
A
ILE
74
n
46
ILE
74
A
SER
75
n
47
SER
75
A
ASP
76
n
48
ASP
76
A
TRP
77
n
49
TRP
77
A
GLY
78
n
50
GLY
78
A
GLU
79
n
51
GLU
79
A
LEU
80
n
52
LEU
80
A
PRO
81
n
53
PRO
81
A
ASN
82
n
54
ASN
82
A
GLY
83
n
55
GLY
83
A
THR
84
n
56
THR
84
A
ARG
85
n
57
ARG
85
A
VAL
86
n
58
VAL
86
A
PRO
87
n
59
PRO
87
A
MET
88
n
60
MET
88
A
GLU
89
n
61
GLU
89
A
VAL
90
n
62
VAL
90
A
VAL
91
n
63
VAL
91
A
LEU
92
n
64
LEU
92
A
LEU
93
n
65
LEU
93
A
LYS
94
n
66
LYS
94
A
LYS
95
n
67
LYS
95
A
VAL
96
n
68
VAL
96
A
SER
97
n
69
SER
97
A
SER
98
n
70
SER
98
A
GLY
99
n
71
GLY
99
A
PHE
100
n
72
PHE
100
A
SER
101
n
73
SER
101
A
GLY
102
n
74
GLY
102
A
VAL
103
n
75
VAL
103
A
ILE
104
n
76
ILE
104
A
ARG
105
n
77
ARG
105
A
LEU
106
n
78
LEU
106
A
LEU
107
n
79
LEU
107
A
ASP
108
n
80
ASP
108
A
TRP
109
n
81
TRP
109
A
PHE
110
n
82
PHE
110
A
GLU
111
n
83
GLU
111
A
ARG
112
n
84
ARG
112
A
PRO
113
n
85
PRO
113
A
ASP
114
n
86
ASP
114
A
SER
115
n
87
SER
115
A
PHE
116
n
88
PHE
116
A
VAL
117
n
89
VAL
117
A
LEU
118
n
90
LEU
118
A
ILE
119
n
91
ILE
119
A
LEU
120
n
92
LEU
120
A
GLU
121
n
93
GLU
121
A
ARG
122
n
94
ARG
122
A
PRO
123
n
95
PRO
123
A
GLU
124
n
96
GLU
124
A
PRO
125
n
97
PRO
125
A
VAL
126
n
98
VAL
126
A
GLN
127
n
99
GLN
127
A
ASP
128
n
100
ASP
128
A
LEU
129
n
101
LEU
129
A
PHE
130
n
102
PHE
130
A
ASP
131
n
103
ASP
131
A
PHE
132
n
104
PHE
132
A
ILE
133
n
105
ILE
133
A
THR
134
n
106
THR
134
A
GLU
135
n
107
GLU
135
A
ARG
136
n
108
ARG
136
A
GLY
137
n
109
GLY
137
A
ALA
138
n
110
ALA
138
A
LEU
139
n
111
LEU
139
A
GLN
140
n
112
GLN
140
A
GLU
141
n
113
GLU
141
A
GLU
142
n
114
GLU
142
A
LEU
143
n
115
LEU
143
A
ALA
144
n
116
ALA
144
A
ARG
145
n
117
ARG
145
A
SER
146
n
118
SER
146
A
PHE
147
n
119
PHE
147
A
PHE
148
n
120
PHE
148
A
TRP
149
n
121
TRP
149
A
GLN
150
n
122
GLN
150
A
VAL
151
n
123
VAL
151
A
LEU
152
n
124
LEU
152
A
GLU
153
n
125
GLU
153
A
ALA
154
n
126
ALA
154
A
VAL
155
n
127
VAL
155
A
ARG
156
n
128
ARG
156
A
HIS
157
n
129
HIS
157
A
CYS
158
n
130
CYS
158
A
HIS
159
n
131
HIS
159
A
ASN
160
n
132
ASN
160
A
CYS
161
n
133
CYS
161
A
GLY
162
n
134
GLY
162
A
VAL
163
n
135
VAL
163
A
LEU
164
n
136
LEU
164
A
HIS
165
n
137
HIS
165
A
ARG
166
n
138
ARG
166
A
ASP
167
n
139
ASP
167
A
ILE
168
n
140
ILE
168
A
LYS
169
n
141
LYS
169
A
ASP
170
n
142
ASP
170
A
GLU
171
n
143
GLU
171
A
ASN
172
n
144
ASN
172
A
ILE
173
n
145
ILE
173
A
LEU
174
n
146
LEU
174
A
ILE
175
n
147
ILE
175
A
ASP
176
n
148
ASP
176
A
LEU
177
n
149
LEU
177
A
ASN
178
n
150
ASN
178
A
ARG
179
n
151
ARG
179
A
GLY
180
n
152
GLY
180
A
GLU
181
n
153
GLU
181
A
LEU
182
n
154
LEU
182
A
LYS
183
n
155
LYS
183
A
LEU
184
n
156
LEU
184
A
ILE
185
n
157
ILE
185
A
ASP
186
n
158
ASP
186
A
PHE
187
n
159
PHE
187
A
GLY
188
n
160
GLY
188
A
SER
189
n
161
SER
189
A
GLY
190
n
162
GLY
190
A
ALA
191
n
163
ALA
191
A
LEU
192
n
164
LEU
192
A
LEU
193
n
165
LEU
193
A
LYS
194
n
166
LYS
194
A
ASP
195
n
167
ASP
195
A
THR
196
n
168
THR
196
A
VAL
197
n
169
VAL
197
A
TYR
198
n
170
TYR
198
A
THR
199
n
171
THR
199
A
ASP
200
n
172
ASP
200
A
PHE
201
n
173
PHE
201
A
ASP
202
n
174
ASP
202
A
GLY
203
n
175
GLY
203
A
THR
204
n
176
THR
204
A
ARG
205
n
177
ARG
205
A
VAL
206
n
178
VAL
206
A
TYR
207
n
179
TYR
207
A
SER
208
n
180
SER
208
A
PRO
209
n
181
PRO
209
A
PRO
210
n
182
PRO
210
A
GLU
211
n
183
GLU
211
A
TRP
212
n
184
TRP
212
A
ILE
213
n
185
ILE
213
A
ARG
214
n
186
ARG
214
A
TYR
215
n
187
TYR
215
A
HIS
216
n
188
HIS
216
A
ARG
217
n
189
ARG
217
A
TYR
218
n
190
TYR
218
A
HIS
219
n
191
HIS
219
A
GLY
220
n
192
GLY
220
A
ARG
221
n
193
ARG
221
A
SER
222
n
194
SER
222
A
ALA
223
n
195
ALA
223
A
ALA
224
n
196
ALA
224
A
VAL
225
n
197
VAL
225
A
TRP
226
n
198
TRP
226
A
SER
227
n
199
SER
227
A
LEU
228
n
200
LEU
228
A
GLY
229
n
201
GLY
229
A
ILE
230
n
202
ILE
230
A
LEU
231
n
203
LEU
231
A
LEU
232
n
204
LEU
232
A
TYR
233
n
205
TYR
233
A
ASP
234
n
206
ASP
234
A
MET
235
n
207
MET
235
A
VAL
236
n
208
VAL
236
A
CYS
237
n
209
CYS
237
A
GLY
238
n
210
GLY
238
A
ASP
239
n
211
ASP
239
A
ILE
240
n
212
ILE
240
A
PRO
241
n
213
PRO
241
A
PHE
242
n
214
PHE
242
A
GLU
243
n
215
GLU
243
A
HIS
244
n
216
HIS
244
A
ASP
245
n
217
ASP
245
A
GLU
246
n
218
GLU
246
A
GLU
247
n
219
GLU
247
A
ILE
248
n
220
ILE
248
A
ILE
249
n
221
ILE
249
A
ARG
250
n
222
ARG
250
A
GLY
251
n
223
GLY
251
A
GLN
252
n
224
GLN
252
A
VAL
253
n
225
VAL
253
A
PHE
254
n
226
PHE
254
A
PHE
255
n
227
PHE
255
A
ARG
256
n
228
ARG
256
A
GLN
257
n
229
GLN
257
A
ARG
258
n
230
ARG
258
A
VAL
259
n
231
VAL
259
A
SER
260
n
232
SER
260
A
SER
261
n
233
SER
261
A
GLU
262
n
234
GLU
262
A
CYS
263
n
235
CYS
263
A
GLN
264
n
236
GLN
264
A
HIS
265
n
237
HIS
265
A
LEU
266
n
238
LEU
266
A
ILE
267
n
239
ILE
267
A
ARG
268
n
240
ARG
268
A
TRP
269
n
241
TRP
269
A
CYS
270
n
242
CYS
270
A
LEU
271
n
243
LEU
271
A
ALA
272
n
244
ALA
272
A
LEU
273
n
245
LEU
273
A
ARG
274
n
246
ARG
274
A
PRO
275
n
247
PRO
275
A
SER
276
n
248
SER
276
A
ASP
277
n
249
ASP
277
A
ARG
278
n
250
ARG
278
A
PRO
279
n
251
PRO
279
A
THR
280
n
252
THR
280
A
PHE
281
n
253
PHE
281
A
GLU
282
n
254
GLU
282
A
GLU
283
n
255
GLU
283
A
ILE
284
n
256
ILE
284
A
GLN
285
n
257
GLN
285
A
ASN
286
n
258
ASN
286
A
HIS
287
n
259
HIS
287
A
PRO
288
n
260
PRO
288
A
TRP
289
n
261
TRP
289
A
MET
290
n
262
MET
290
A
GLN
291
n
263
GLN
291
A
ASP
292
n
264
ASP
292
A
VAL
293
n
265
VAL
293
A
LEU
294
n
266
LEU
294
A
LEU
295
n
267
LEU
295
A
PRO
296
n
268
PRO
296
A
GLN
297
n
269
GLN
297
A
GLU
298
n
270
GLU
298
A
THR
299
n
271
THR
299
A
ALA
300
n
272
ALA
300
A
GLU
301
n
273
GLU
301
A
ILE
302
n
274
ILE
302
A
HIS
303
n
275
HIS
303
A
LEU
304
n
276
LEU
304
A
HIS
305
n
277
HIS
305
A
SER
306
n
278
SER
306
A
n
279
307
A
n
280
308
A
n
281
309
A
n
282
310
A
n
283
311
A
n
284
312
A
n
285
313
A
n
286
314
A
n
287
315
A
n
288
316
A
n
289
317
A
n
290
318
A
n
291
319
A
n
292
320
A
n
293
321
A
3.3330
0.7799
-0.7404
2.0105
-0.4062
2.6780
-0.0453
0.0923
0.1052
-0.0369
0.1104
-0.0411
0.0013
0.3900
-0.0651
0.0156
-0.0247
-0.0328
0.0632
-0.0449
0.5547
refined
67.4190
27.4790
-0.8430
X-RAY DIFFRACTION
A
33
A
5
A
306
A
278
X-RAY DIFFRACTION
1
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
55
A
N
GLY
27
A
O
VAL
64
A
O
VAL
36
A
N
ALA
65
A
N
ALA
37
A
O
LEU
120
A
O
LEU
92
A
O
VAL
117
A
O
VAL
89
A
N
PHE
110
A
N
PHE
82
A
N
GLY
78
A
N
GLY
50
A
O
VAL
86
A
O
VAL
58
A
N
GLN
127
A
N
GLN
99
A
O
ILE
175
A
O
ILE
147
A
N
ASP
176
A
N
ASP
148
A
O
GLU
181
A
O
GLU
153
A
N
LEU
164
A
N
LEU
136
A
O
ALA
191
A
O
ALA
163
1
A
LYS
29
A
LYS
1
1
Y
1
A
GLU
30
A
GLU
2
1
Y
1
A
LYS
31
A
LYS
3
1
Y
1
A
GLU
32
A
GLU
4
1
Y
1
A
LEU
307
A
LEU
279
1
Y
1
A
SER
308
A
SER
280
1
Y
1
A
PRO
309
A
PRO
281
1
Y
1
A
GLY
310
A
GLY
282
1
Y
1
A
PRO
311
A
PRO
283
1
Y
1
A
SER
312
A
SER
284
1
Y
1
A
LYS
313
A
LYS
285
1
Y
1
A
VAL
314
A
VAL
286
1
Y
1
A
ASP
315
A
ASP
287
1
Y
1
A
HIS
316
A
HIS
288
1
Y
1
A
HIS
317
A
HIS
289
1
Y
1
A
HIS
318
A
HIS
290
1
Y
1
A
HIS
319
A
HIS
291
1
Y
1
A
HIS
320
A
HIS
292
1
Y
1
A
HIS
321
A
HIS
293
1
Y
1
A
A
OG
O
SER
HOH
222
1
2.12
1
5.46
0.90
118.30
123.76
A
A
A
CB
CG
OD2
ASP
ASP
ASP
234
234
234
N
1
A
LEU
34
65.40
157.88
1
A
PRO
42
-55.71
177.92
1
A
ASP
60
-155.57
40.25
1
A
ASN
61
45.68
22.53
1
A
SER
97
-78.39
-152.66
1
A
SER
98
66.19
106.61
1
A
SER
101
29.65
179.18
1
A
ARG
166
70.03
-4.07
1
A
ASP
167
-140.15
41.45
1
A
ASP
186
60.08
89.22
1
A
ASP
202
-142.66
34.64
20.701
5.80
2.90
0.00
5.80
0.00
-8.70
0.929
0.892
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.26166
0.20768
0.21034
0.21034
2.85
84.51
501
9976
9976
4.8
99.79
18.357
0.326
RANDOM
1
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
0.991
0.363
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
0.326
0.363
2.85
84.51
25
2282
27
0
2230
0.013
0.021
2320
0.002
0.020
2081
1.545
1.957
3150
0.868
3.000
4817
2.949
5.000
273
0.094
0.200
332
0.005
0.020
2585
0.003
0.020
508
0.211
0.200
511
0.220
0.200
2437
0.087
0.200
1416
0.245
0.200
39
0.112
0.200
13
0.219
0.200
60
0.131
0.200
6
0.427
1.500
1365
0.820
2.000
2212
1.091
3.000
955
1.953
4.500
938
0.336
0.328
2.92
36
737
3799
20
100
2.85
84.51
2O65
9976
9976
0
0
0.138
1
5.1
4.9
99.79
0.776
2.85
2.92
1.6
3799
4.9
100
refinement
REFMAC
5.1.25
data collection
Blu-Ice
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
phasing
CCP4
Crystal structure of Pim1 with Pentahydroxyflavone
1
N
N
2
N
N
3
N
N
4
N
N
A
MET
88
A
MET
60
HELX_P
A
SER
97
A
SER
69
1
1
10
A
LEU
129
A
LEU
101
HELX_P
A
GLY
137
A
GLY
109
1
2
9
A
GLN
140
A
GLN
112
HELX_P
A
GLY
162
A
GLY
134
1
3
23
A
LYS
169
A
LYS
141
HELX_P
A
GLU
171
A
GLU
143
5
4
3
A
THR
204
A
THR
176
HELX_P
A
SER
208
A
SER
180
5
5
5
A
PRO
209
A
PRO
181
HELX_P
A
HIS
216
A
HIS
188
1
6
8
A
HIS
219
A
HIS
191
HELX_P
A
GLY
238
A
GLY
210
1
7
20
A
HIS
244
A
HIS
216
HELX_P
A
GLY
251
A
GLY
223
1
8
8
A
SER
260
A
SER
232
HELX_P
A
LEU
271
A
LEU
243
1
9
12
A
ARG
274
A
ARG
246
HELX_P
A
ARG
278
A
ARG
250
5
10
5
A
THR
280
A
THR
252
HELX_P
A
HIS
287
A
HIS
259
1
11
8
A
PRO
288
A
PRO
260
HELX_P
A
GLN
291
A
GLN
263
5
12
4
A
LEU
295
A
LEU
267
HELX_P
A
LEU
304
A
LEU
276
1
13
10
TRANSFERASE
Pim1, Pentahydroxyflavone, TRANSFERASE
A
GLU
124
A
GLU
96
1
A
PRO
125
A
PRO
97
-1.37
PIM1_HUMAN
UNP
1
120
P11309
KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD
WFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG
SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIR
WCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
120
404
2O65
29
313
P11309
A
1
1
285
1
cloning artifact
VAL
314
2O65
A
P11309
UNP
286
1
cloning artifact
ASP
315
2O65
A
P11309
UNP
287
1
cloning artifact
HIS
316
2O65
A
P11309
UNP
288
1
cloning artifact
HIS
317
2O65
A
P11309
UNP
289
1
cloning artifact
HIS
318
2O65
A
P11309
UNP
290
1
cloning artifact
HIS
319
2O65
A
P11309
UNP
291
1
cloning artifact
HIS
320
2O65
A
P11309
UNP
292
1
cloning artifact
HIS
321
2O65
A
P11309
UNP
293
4
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
51
A
SER
23
A
ARG
57
A
ARG
29
A
LEU
62
A
LEU
34
A
GLU
70
A
GLU
42
A
SER
115
A
SER
87
A
GLU
121
A
GLU
93
A
LEU
106
A
LEU
78
A
ARG
112
A
ARG
84
A
TRP
77
A
TRP
49
A
GLU
79
A
GLU
51
A
ARG
85
A
ARG
57
A
PRO
87
A
PRO
59
A
VAL
126
A
VAL
98
A
ASP
128
A
ASP
100
A
ILE
173
A
ILE
145
A
ASP
176
A
ASP
148
A
GLU
181
A
GLU
153
A
LEU
184
A
LEU
156
A
VAL
163
A
VAL
135
A
LEU
164
A
LEU
136
A
ALA
191
A
ALA
163
A
LEU
192
A
LEU
164
BINDING SITE FOR RESIDUE IMD A 401
A
IMD
401
Software
7
BINDING SITE FOR RESIDUE MYF A 501
A
MYF
501
Software
7
A
PHE
130
A
PHE
102
7
1_555
A
ILE
133
A
ILE
105
7
1_555
A
THR
134
A
THR
106
7
1_555
A
ASP
170
A
ASP
142
7
1_555
A
ASP
234
A
ASP
206
7
1_555
A
GLY
238
A
GLY
210
7
1_555
A
ASP
239
A
ASP
211
7
1_555
A
HOH
3
D
HOH
7
1_555
A
LEU
44
A
LEU
16
7
1_555
A
PHE
49
A
PHE
21
7
1_555
A
VAL
52
A
VAL
24
7
1_555
A
LYS
67
A
LYS
39
7
1_555
A
LEU
120
A
LEU
92
7
1_555
A
ASP
186
A
ASP
158
7
1_555
170
P 65