0.004459 0.002574 0.000000 0.000000 0.005149 0.000000 0.000000 0.000000 0.013297 0.00000 0.00000 0.00000 Prongay, A.J. Guo, Z. Yao, N. Fischmann, T. Strickland, C. Myers Jr., J. Weber, P.C. Malcolm, B. Beyer, B.M. Ingram, R. Pichardo, J. Hong, Z. Prosise, W.W. Ramanathan, L. Taremi, S.S. Yarosh-Tomaine, T. Zhang, R. Senior, M. Yang, R. Arasappan, A. Bennett, F. Bogen, S.F. Chen, K. Jao, E. Liu, Y. Love, R.G. Saksena, A.K. Venkatraman, S. Girijavallabhan, V. Njoroge, F.G. Madison, V. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 36 90.00 90.00 120.00 224.271 224.271 75.205 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H6 O S 78.133 BETA-MERCAPTOETHANOL non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C26 H44 N4 O6 508.651 tert-butyl {(2S)-1-[(1R,2S,5S)-2-{[(2S,3R)-4-amino-1-cyclopropyl-3-hydroxy-4-oxobutan-2-yl]carbamoyl}-6,6-dimethyl-3-azabicyclo[3.1.0]hex-3-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate ketoamide inhibitor SCH476776, bound form peptide-like C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N C N 76 N O N 77 N S N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N N N 85 R C N 86 N C N 87 N O N 88 N C N 89 N S N 90 N O N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 S C N 100 N C N 101 N O N 102 N C N 103 N C N 104 N C N 105 N O N 106 N N N 107 N O N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 S C N 120 N C N 121 N O N 122 N C N 123 N C N 124 N C N 125 N O N 126 N O N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 N C N 139 N C N 140 N O N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 N C Y 152 N C Y 153 N N Y 154 N C Y 155 N C Y 156 N N N 157 N O N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N O N 169 N H N 170 N H N 171 N O N 172 N C N 173 N O N 174 N C N 175 N C N 176 N C N 177 N C N 178 N N N 179 S C N 180 N C N 181 N C N 182 N C N 183 N C N 184 N C N 185 N O N 186 N N N 187 N C N 188 S C N 189 R C N 190 S C N 191 N C N 192 N C N 193 N C N 194 N C N 195 N O N 196 N N N 197 S C N 198 N C N 199 N C N 200 N C N 201 N C N 202 N O N 203 R C N 204 N O N 205 N N N 206 N C N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 S C N 256 N C N 257 N C N 258 N C N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N N N 296 S C N 297 N C N 298 N O N 299 N C N 300 N C N 301 N C N 302 N C N 303 N N N 304 N O N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N N N 321 S C N 322 N C N 323 N O N 324 N C N 325 N C N 326 N S N 327 N C N 328 N O N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N C Y 349 N C Y 350 N C N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C N 368 N C N 369 N C N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C N 385 N O N 386 N O N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N N N 395 S C N 396 N C N 397 N O N 398 R C N 399 N O N 400 N C N 401 N O N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N N N 412 S C N 413 N C N 414 N O N 415 N C Y 416 N C Y 417 N C Y 418 N C Y 419 N N Y 420 N C Y 421 N C Y 422 N C Y 423 N C Y 424 N C N 425 N O N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N N N 439 S C N 440 N C N 441 N O N 442 N C Y 443 N C Y 444 N C Y 445 N C Y 446 N C Y 447 N C Y 448 N C N 449 N O N 450 N O N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N N N 463 S C N 464 N C N 465 N O N 466 N C N 467 N C N 468 N C N 469 N O N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing Y 149 N sing Y 150 N doub Y 151 N doub N 152 N sing Y 153 N sing N 154 N sing Y 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N doub N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing Y 339 N doub Y 340 N sing Y 341 N sing N 342 N sing Y 343 N doub N 344 N sing Y 345 N doub N 346 N sing Y 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N doub N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N doub N 404 N sing N 405 N sing N 406 N sing N 407 N sing Y 408 N doub Y 409 N sing Y 410 N sing N 411 N sing Y 412 N doub Y 413 N sing Y 414 N sing N 415 N sing Y 416 N sing Y 417 N doub N 418 N sing Y 419 N doub N 420 N sing Y 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N doub N 432 N sing N 433 N sing N 434 N sing N 435 N sing Y 436 N doub Y 437 N sing Y 438 N sing N 439 N sing Y 440 N doub N 441 N sing Y 442 N doub N 443 N sing Y 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N doub N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing US J.Med.Chem. JMCMAR 0151 0022-2623 50 2310 2318 10.1021/jm060173k 17444623 Discovery of the HCV NS3/4A protease inhibitor (1R,5S)-N-[3-amino-1-(cyclobutylmethyl)-2,3-dioxopropyl]-3- [2(S)-[[[(1,1-dimethylethyl)amino]carbonyl]amino]-3,3-dimethyl-1-oxobutyl]- 6,6-dimethyl-3-azabicyclo[3.1.0]hexan-2(S)-carboxamide (Sch 503034) II. Key steps in structure-based optimization. 2007 US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 87 343 355 10.1016/S0092-8674(00)81351-3 8861917 Crystal structure of the hepatitis C virus NS3 protease domain complexed with a synthetic NS4A cofactor peptide. 1996 UK Bioorg.Med.Chem.Lett. BMCLE8 1127 0960-894X 15 4180 4184 10.1016/j.bmcl.2005.06.091 16087332 Hepatitis C virus NS3-4A serine protease inhibitors: SAR of P'2 moiety with improved potency. 2005 UK Bioorg.Med.Chem.Lett. BMCLE8 1127 0960-894X 15 4475 4478 10.1016/j.bmcl.2005.07.033 16112859 Synthesis and biological activity of macrocyclic inhibitors of hepatitis C virus (HCV) NS3 protease. 2005 UK Bioorg.Med.Chem.Lett. BMCLE8 1127 0960-894X 15 4515 4519 10.1016/j.bmcl.2005.07.009 16112862 Hepatitis C virus NS3-4A serine protease inhibitors: use of a P2-P1 cyclopropyl alanine combination for improved potency. 2005 US J.Biol.Chem. JBCHA3 0071 0021-9258 281 8205 8215 10.1074/jbc.M510246200 16352601 Mutations conferring resistance to SCH6, a novel hepatitis C virus NS3/4A protease inhibitor. Reduced RNA replication fitness and partial rescue by second-site mutations. 2006 10.2210/pdb2obo/pdb pdb_00002obo 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 95 1 CCD ADSC QUANTUM 210 SINGLE WAVELENGTH M x-ray 1 1.0 1.0 17-ID APS 1.0 SYNCHROTRON APS BEAMLINE 17-ID 21233.225 HCV NS3 protease UNP residues 1027 1207 2 man polymer 2394.039 HCV NS4A peptide UNP residues 1678 1696 C22S 2 syn polymer 65.409 ZINC ION 2 syn non-polymer 78.133 BETA-MERCAPTOETHANOL 1 syn non-polymer 508.651 tert-butyl {(2S)-1-[(1R,2S,5S)-2-{[(2S,3R)-4-amino-1-cyclopropyl-3-hydroxy-4-oxobutan-2-yl]carbamoyl}-6,6-dimethyl-3-azabicyclo[3.1.0]hex-3-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate 1 syn non-polymer 18.015 water 135 nat water no no MASMTGGQQMGAPITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKG PVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGH AVGLFRAAVCTRGVAKAVDFIPVENLETTMRSGSHHHHHH MASMTGGQQMGAPITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKG PVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGH AVGLFRAAVCTRGVAKAVDFIPVENLETTMRSGSHHHHHH A,C polypeptide(L) no no KKGSVVIVGRIVLSGKPAIIPKK KKGSVVIVGRIVLSGKPAIIPKK B,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Hepacivirus Escherichia sample HCV 11103 Hepatitis C virus 562 Escherichia coli 1 3.85 68.04 VAPOR DIFFUSION, HANGING DROP The protein (NS3 complexed with KK-NS4a(21-39)-KK peptide) was at 12-15 mg/ml in 15 mM MES, pH 6.5 1 M NaCl 20 mM b-mercaptoethanol. Hanging Drops were formed by mixing 4:l protein solution with 4:l {0.75-1.0 M NaCl, 0.1M Na/K phosphate 0.1 M Mes, pH 5.8-6.1 20 mM b-mercaptoethanol} The drop was equilibrated the drops over 1 ml {(1.25-1.50 M) NaCl - 0.1M Na/K phosphate 0.1 M Mes, pH 5.6-5.8, 20 mM b-mercaptoethanol} , VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_conn_type struct_ref_seq_dif struct_site repository Initial release Derived calculations Version format compliance Structure summary Database references Non-polymer description Source and taxonomy Structure summary Data collection Database references Derived calculations Refinement description 1 0 2007-07-31 1 1 2011-07-13 1 2 2012-02-22 1 3 2012-12-26 1 4 2023-08-30 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn_type.id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Crystal structure of the hepatitis C virus NS3 protease domain complexed with a synthetic NS4A cofactor peptide. HEPATITIS C VIRUS NS3-4A SERINE PROTEASE INHIBITORS. SAR OF P2' MOIETY WITH IMPROVED POTENCY. SYNTHESIS AND BIOLOGICAL ACTIVITY OF MACROCYCLIC INHIBITORS OF HEPATITIS C VIRUS (HCV) NS3 PROTEASE HEPATITIS C VIRUS NS3-4A SERINE PROTEASE INHIBITORS: USE OF A P2-P1 CYCLOPROPYL ALANINE COMBINATION FOR IMPROVED POTENCY. MUTATIONS CONFERRING RESISTANCE TO SCH6, A NOVEL HEPATITIS C VIRUS NS3/4A PROTEASE INHIBITOR REDUCED RNA REPLICATION FITNESS AND PARTIAL RESCUE BY SECOND SITE MUTATIONS DEPEPTIDIZATION EFFORTS ON P3-P2 A-KETOAMIDE INHIBITORS OF HCV NS3-4A SERINE PROTEASE: EFFECT ON HCV REPLICON ACTIVITY. RCSB Y RCSB 2006-12-19 REL REL ZN ZINC ION BME BETA-MERCAPTOETHANOL HUD tert-butyl {(2S)-1-[(1R,2S,5S)-2-{[(2S,3R)-4-amino-1-cyclopropyl-3-hydroxy-4-oxobutan-2-yl]carbamoyl}-6,6-dimethyl-3-azabicyclo[3.1.0]hex-3-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate HOH water 31647 Hepatitis C virus sample UPON BINDING TO SER A139 THE ALDEHYDE GROUP OF THE STARTING MOLECULE HUD FORMS A HEMIACETAL BONDING WITH THE PROTEIN 2O8M PDB Entry 2O8M PDB experimental model Inhibitor TERT-BUTYL [(1S)-1-{[(1R,2S,5S)-2-({[(1S)-3-AMINO-1-(CYCLOPROPYLMETHYL)-2,3-DIOXOPROPYL]AMINO}CARBONYL)-6,6-DIMETHYL-3-AZABICYCLO[3.1.0]HEX-3-YL]CARBONYL}-2,2-DIMETHYLPROPYL]CARBAMATE Peptide-like ZN 901 3 ZN ZN 901 A BME 800 4 BME BME 902 A INH 999 5 HUD HUD 903 A ZN 902 3 ZN ZN 201 C HOH 2 6 HOH HOH 1000 A HOH 3 6 HOH HOH 1001 A HOH 6 6 HOH HOH 1002 A HOH 8 6 HOH HOH 1003 A HOH 10 6 HOH HOH 1004 A HOH 13 6 HOH HOH 1005 A HOH 16 6 HOH HOH 1006 A HOH 17 6 HOH HOH 1007 A HOH 19 6 HOH HOH 1008 A HOH 20 6 HOH HOH 1009 A HOH 21 6 HOH HOH 1010 A HOH 23 6 HOH HOH 1011 A HOH 24 6 HOH HOH 1012 A HOH 25 6 HOH HOH 1013 A HOH 26 6 HOH HOH 1014 A HOH 28 6 HOH HOH 1015 A HOH 29 6 HOH HOH 1016 A HOH 31 6 HOH HOH 1017 A HOH 32 6 HOH HOH 1018 A HOH 33 6 HOH HOH 1019 A HOH 36 6 HOH HOH 1020 A HOH 37 6 HOH HOH 1021 A HOH 38 6 HOH HOH 1022 A HOH 39 6 HOH HOH 1023 A HOH 40 6 HOH HOH 1024 A HOH 43 6 HOH HOH 1025 A HOH 45 6 HOH HOH 1026 A HOH 49 6 HOH HOH 1027 A HOH 51 6 HOH HOH 1028 A HOH 52 6 HOH HOH 1029 A HOH 54 6 HOH HOH 1030 A HOH 56 6 HOH HOH 1031 A HOH 57 6 HOH HOH 1032 A HOH 61 6 HOH HOH 1033 A HOH 64 6 HOH HOH 1034 A HOH 65 6 HOH HOH 1035 A HOH 66 6 HOH HOH 1036 A HOH 68 6 HOH HOH 1037 A HOH 69 6 HOH HOH 1038 A HOH 71 6 HOH HOH 1039 A HOH 72 6 HOH HOH 1040 A HOH 75 6 HOH HOH 1041 A HOH 76 6 HOH HOH 1042 A HOH 81 6 HOH HOH 1043 A HOH 82 6 HOH HOH 1044 A HOH 83 6 HOH HOH 1045 A HOH 84 6 HOH HOH 1046 A HOH 85 6 HOH HOH 1047 A HOH 87 6 HOH HOH 1048 A HOH 88 6 HOH HOH 1049 A HOH 89 6 HOH HOH 1050 A HOH 90 6 HOH HOH 1051 A HOH 91 6 HOH HOH 1052 A HOH 92 6 HOH HOH 1053 A HOH 98 6 HOH HOH 1054 A HOH 99 6 HOH HOH 1055 A HOH 102 6 HOH HOH 1056 A HOH 106 6 HOH HOH 1057 A HOH 107 6 HOH HOH 1058 A HOH 108 6 HOH HOH 1059 A HOH 115 6 HOH HOH 1060 A HOH 116 6 HOH HOH 1061 A HOH 120 6 HOH HOH 1062 A HOH 121 6 HOH HOH 1063 A HOH 122 6 HOH HOH 1064 A HOH 125 6 HOH HOH 1065 A HOH 126 6 HOH HOH 1066 A HOH 127 6 HOH HOH 1067 A HOH 129 6 HOH HOH 1068 A HOH 130 6 HOH HOH 1069 A HOH 131 6 HOH HOH 1070 A HOH 133 6 HOH HOH 1071 A HOH 134 6 HOH HOH 1072 A HOH 135 6 HOH HOH 1073 A HOH 7 6 HOH HOH 101 B HOH 12 6 HOH HOH 102 B HOH 18 6 HOH HOH 103 B HOH 62 6 HOH HOH 104 B HOH 63 6 HOH HOH 105 B HOH 79 6 HOH HOH 106 B HOH 112 6 HOH HOH 107 B HOH 1 6 HOH HOH 301 C HOH 4 6 HOH HOH 302 C HOH 5 6 HOH HOH 303 C HOH 9 6 HOH HOH 304 C HOH 11 6 HOH HOH 305 C HOH 15 6 HOH HOH 306 C HOH 22 6 HOH HOH 307 C HOH 27 6 HOH HOH 308 C HOH 30 6 HOH HOH 309 C HOH 34 6 HOH HOH 310 C HOH 35 6 HOH HOH 311 C HOH 42 6 HOH HOH 312 C HOH 46 6 HOH HOH 313 C HOH 47 6 HOH HOH 314 C HOH 48 6 HOH HOH 315 C HOH 50 6 HOH HOH 316 C HOH 53 6 HOH HOH 317 C HOH 55 6 HOH HOH 318 C HOH 58 6 HOH HOH 319 C HOH 60 6 HOH HOH 320 C HOH 67 6 HOH HOH 321 C HOH 70 6 HOH HOH 322 C HOH 73 6 HOH HOH 323 C HOH 74 6 HOH HOH 324 C HOH 77 6 HOH HOH 325 C HOH 78 6 HOH HOH 326 C HOH 80 6 HOH HOH 327 C HOH 86 6 HOH HOH 328 C HOH 93 6 HOH HOH 329 C HOH 95 6 HOH HOH 330 C HOH 97 6 HOH HOH 331 C HOH 100 6 HOH HOH 332 C HOH 101 6 HOH HOH 333 C HOH 103 6 HOH HOH 334 C HOH 104 6 HOH HOH 335 C HOH 105 6 HOH HOH 336 C HOH 109 6 HOH HOH 337 C HOH 110 6 HOH HOH 338 C HOH 111 6 HOH HOH 339 C HOH 113 6 HOH HOH 340 C HOH 114 6 HOH HOH 341 C HOH 118 6 HOH HOH 342 C HOH 119 6 HOH HOH 343 C HOH 123 6 HOH HOH 344 C HOH 124 6 HOH HOH 345 C HOH 128 6 HOH HOH 346 C HOH 132 6 HOH HOH 347 C HOH 14 6 HOH HOH 101 D HOH 41 6 HOH HOH 102 D HOH 44 6 HOH HOH 103 D HOH 59 6 HOH HOH 104 D HOH 94 6 HOH HOH 105 D HOH 96 6 HOH HOH 106 D HOH 117 6 HOH HOH 107 D n 1 -10 A n 2 -9 A n 3 -8 A n 4 -7 A n 5 -6 A n 6 -5 A n 7 -4 A n 8 -3 A n 9 -2 A MET -1 n 10 MET -1 A GLY 0 n 11 GLY 0 A ALA 1 n 12 ALA 1 A PRO 2 n 13 PRO 2 A ILE 3 n 14 ILE 3 A THR 4 n 15 THR 4 A ALA 5 n 16 ALA 5 A TYR 6 n 17 TYR 6 A ALA 7 n 18 ALA 7 A GLN 8 n 19 GLN 8 A GLN 9 n 20 GLN 9 A THR 10 n 21 THR 10 A ARG 11 n 22 ARG 11 A GLY 12 n 23 GLY 12 A LEU 13 n 24 LEU 13 A LEU 14 n 25 LEU 14 A GLY 15 n 26 GLY 15 A CYS 16 n 27 CYS 16 A ILE 17 n 28 ILE 17 A ILE 18 n 29 ILE 18 A THR 19 n 30 THR 19 A SER 20 n 31 SER 20 A LEU 21 n 32 LEU 21 A THR 22 n 33 THR 22 A GLY 23 n 34 GLY 23 A ARG 24 n 35 ARG 24 A ASP 25 n 36 ASP 25 A LYS 26 n 37 LYS 26 A ASN 27 n 38 ASN 27 A GLN 28 n 39 GLN 28 A VAL 29 n 40 VAL 29 A GLU 30 n 41 GLU 30 A GLY 31 n 42 GLY 31 A GLU 32 n 43 GLU 32 A VAL 33 n 44 VAL 33 A GLN 34 n 45 GLN 34 A ILE 35 n 46 ILE 35 A VAL 36 n 47 VAL 36 A SER 37 n 48 SER 37 A THR 38 n 49 THR 38 A ALA 39 n 50 ALA 39 A THR 40 n 51 THR 40 A GLN 41 n 52 GLN 41 A THR 42 n 53 THR 42 A PHE 43 n 54 PHE 43 A LEU 44 n 55 LEU 44 A ALA 45 n 56 ALA 45 A THR 46 n 57 THR 46 A CYS 47 n 58 CYS 47 A ILE 48 n 59 ILE 48 A ASN 49 n 60 ASN 49 A GLY 50 n 61 GLY 50 A VAL 51 n 62 VAL 51 A CYS 52 n 63 CYS 52 A TRP 53 n 64 TRP 53 A THR 54 n 65 THR 54 A VAL 55 n 66 VAL 55 A TYR 56 n 67 TYR 56 A HIS 57 n 68 HIS 57 A GLY 58 n 69 GLY 58 A ALA 59 n 70 ALA 59 A GLY 60 n 71 GLY 60 A THR 61 n 72 THR 61 A ARG 62 n 73 ARG 62 A THR 63 n 74 THR 63 A ILE 64 n 75 ILE 64 A ALA 65 n 76 ALA 65 A SER 66 n 77 SER 66 A PRO 67 n 78 PRO 67 A LYS 68 n 79 LYS 68 A GLY 69 n 80 GLY 69 A PRO 70 n 81 PRO 70 A VAL 71 n 82 VAL 71 A ILE 72 n 83 ILE 72 A GLN 73 n 84 GLN 73 A MET 74 n 85 MET 74 A TYR 75 n 86 TYR 75 A THR 76 n 87 THR 76 A ASN 77 n 88 ASN 77 A VAL 78 n 89 VAL 78 A ASP 79 n 90 ASP 79 A GLN 80 n 91 GLN 80 A ASP 81 n 92 ASP 81 A LEU 82 n 93 LEU 82 A VAL 83 n 94 VAL 83 A GLY 84 n 95 GLY 84 A TRP 85 n 96 TRP 85 A PRO 86 n 97 PRO 86 A ALA 87 n 98 ALA 87 A PRO 88 n 99 PRO 88 A GLN 89 n 100 GLN 89 A GLY 90 n 101 GLY 90 A SER 91 n 102 SER 91 A ARG 92 n 103 ARG 92 A SER 93 n 104 SER 93 A LEU 94 n 105 LEU 94 A THR 95 n 106 THR 95 A PRO 96 n 107 PRO 96 A CYS 97 n 108 CYS 97 A THR 98 n 109 THR 98 A CYS 99 n 110 CYS 99 A GLY 100 n 111 GLY 100 A SER 101 n 112 SER 101 A SER 102 n 113 SER 102 A ASP 103 n 114 ASP 103 A LEU 104 n 115 LEU 104 A TYR 105 n 116 TYR 105 A LEU 106 n 117 LEU 106 A VAL 107 n 118 VAL 107 A THR 108 n 119 THR 108 A ARG 109 n 120 ARG 109 A HIS 110 n 121 HIS 110 A ALA 111 n 122 ALA 111 A ASP 112 n 123 ASP 112 A VAL 113 n 124 VAL 113 A ILE 114 n 125 ILE 114 A PRO 115 n 126 PRO 115 A VAL 116 n 127 VAL 116 A ARG 117 n 128 ARG 117 A ARG 118 n 129 ARG 118 A ARG 119 n 130 ARG 119 A GLY 120 n 131 GLY 120 A ASP 121 n 132 ASP 121 A SER 122 n 133 SER 122 A ARG 123 n 134 ARG 123 A GLY 124 n 135 GLY 124 A SER 125 n 136 SER 125 A LEU 126 n 137 LEU 126 A LEU 127 n 138 LEU 127 A SER 128 n 139 SER 128 A PRO 129 n 140 PRO 129 A ARG 130 n 141 ARG 130 A PRO 131 n 142 PRO 131 A ILE 132 n 143 ILE 132 A SER 133 n 144 SER 133 A TYR 134 n 145 TYR 134 A LEU 135 n 146 LEU 135 A LYS 136 n 147 LYS 136 A GLY 137 n 148 GLY 137 A SER 138 n 149 SER 138 A SER 139 n 150 SER 139 A GLY 140 n 151 GLY 140 A GLY 141 n 152 GLY 141 A PRO 142 n 153 PRO 142 A LEU 143 n 154 LEU 143 A LEU 144 n 155 LEU 144 A CYS 145 n 156 CYS 145 A PRO 146 n 157 PRO 146 A ALA 147 n 158 ALA 147 A GLY 148 n 159 GLY 148 A HIS 149 n 160 HIS 149 A ALA 150 n 161 ALA 150 A VAL 151 n 162 VAL 151 A GLY 152 n 163 GLY 152 A LEU 153 n 164 LEU 153 A PHE 154 n 165 PHE 154 A ARG 155 n 166 ARG 155 A ALA 156 n 167 ALA 156 A ALA 157 n 168 ALA 157 A VAL 158 n 169 VAL 158 A CYS 159 n 170 CYS 159 A THR 160 n 171 THR 160 A ARG 161 n 172 ARG 161 A GLY 162 n 173 GLY 162 A VAL 163 n 174 VAL 163 A ALA 164 n 175 ALA 164 A LYS 165 n 176 LYS 165 A ALA 166 n 177 ALA 166 A VAL 167 n 178 VAL 167 A ASP 168 n 179 ASP 168 A PHE 169 n 180 PHE 169 A ILE 170 n 181 ILE 170 A PRO 171 n 182 PRO 171 A VAL 172 n 183 VAL 172 A GLU 173 n 184 GLU 173 A ASN 174 n 185 ASN 174 A LEU 175 n 186 LEU 175 A GLU 176 n 187 GLU 176 A THR 177 n 188 THR 177 A THR 178 n 189 THR 178 A MET 179 n 190 MET 179 A ARG 180 n 191 ARG 180 A SER 181 n 192 SER 181 A GLY 182 n 193 GLY 182 A n 194 183 A n 195 184 A n 196 185 A n 197 186 A n 198 187 A n 199 188 A n 200 189 A LYS 19 n 1 LYS 19 B LYS 20 n 2 LYS 20 B GLY 21 n 3 GLY 21 B SER 22 n 4 SER 22 B VAL 23 n 5 VAL 23 B VAL 24 n 6 VAL 24 B ILE 25 n 7 ILE 25 B VAL 26 n 8 VAL 26 B GLY 27 n 9 GLY 27 B ARG 28 n 10 ARG 28 B ILE 29 n 11 ILE 29 B VAL 30 n 12 VAL 30 B LEU 31 n 13 LEU 31 B SER 32 n 14 SER 32 B GLY 33 n 15 GLY 33 B LYS 34 n 16 LYS 34 B PRO 35 n 17 PRO 35 B ALA 36 n 18 ALA 36 B ILE 37 n 19 ILE 37 B ILE 38 n 20 ILE 38 B PRO 39 n 21 PRO 39 B LYS 40 n 22 LYS 40 B LYS 41 n 23 LYS 41 B n 1 -10 C n 2 -9 C n 3 -8 C n 4 -7 C n 5 -6 C n 6 -5 C n 7 -4 C n 8 -3 C n 9 -2 C n 10 -1 C n 11 0 C n 12 1 C n 13 2 C n 14 3 C n 15 4 C n 16 5 C n 17 6 C n 18 7 C n 19 8 C n 20 9 C n 21 10 C n 22 11 C n 23 12 C n 24 13 C n 25 14 C n 26 15 C n 27 16 C n 28 17 C n 29 18 C n 30 19 C n 31 20 C n 32 21 C n 33 22 C n 34 23 C n 35 24 C n 36 25 C n 37 26 C n 38 27 C n 39 28 C VAL 29 n 40 VAL 29 C GLU 30 n 41 GLU 30 C GLY 31 n 42 GLY 31 C GLU 32 n 43 GLU 32 C VAL 33 n 44 VAL 33 C GLN 34 n 45 GLN 34 C ILE 35 n 46 ILE 35 C VAL 36 n 47 VAL 36 C SER 37 n 48 SER 37 C THR 38 n 49 THR 38 C ALA 39 n 50 ALA 39 C THR 40 n 51 THR 40 C GLN 41 n 52 GLN 41 C THR 42 n 53 THR 42 C PHE 43 n 54 PHE 43 C LEU 44 n 55 LEU 44 C ALA 45 n 56 ALA 45 C THR 46 n 57 THR 46 C CYS 47 n 58 CYS 47 C ILE 48 n 59 ILE 48 C ASN 49 n 60 ASN 49 C GLY 50 n 61 GLY 50 C VAL 51 n 62 VAL 51 C CYS 52 n 63 CYS 52 C TRP 53 n 64 TRP 53 C THR 54 n 65 THR 54 C VAL 55 n 66 VAL 55 C TYR 56 n 67 TYR 56 C HIS 57 n 68 HIS 57 C GLY 58 n 69 GLY 58 C ALA 59 n 70 ALA 59 C GLY 60 n 71 GLY 60 C THR 61 n 72 THR 61 C ARG 62 n 73 ARG 62 C THR 63 n 74 THR 63 C ILE 64 n 75 ILE 64 C ALA 65 n 76 ALA 65 C SER 66 n 77 SER 66 C PRO 67 n 78 PRO 67 C LYS 68 n 79 LYS 68 C GLY 69 n 80 GLY 69 C PRO 70 n 81 PRO 70 C VAL 71 n 82 VAL 71 C ILE 72 n 83 ILE 72 C GLN 73 n 84 GLN 73 C MET 74 n 85 MET 74 C TYR 75 n 86 TYR 75 C THR 76 n 87 THR 76 C ASN 77 n 88 ASN 77 C VAL 78 n 89 VAL 78 C ASP 79 n 90 ASP 79 C GLN 80 n 91 GLN 80 C ASP 81 n 92 ASP 81 C LEU 82 n 93 LEU 82 C VAL 83 n 94 VAL 83 C GLY 84 n 95 GLY 84 C TRP 85 n 96 TRP 85 C PRO 86 n 97 PRO 86 C ALA 87 n 98 ALA 87 C PRO 88 n 99 PRO 88 C GLN 89 n 100 GLN 89 C GLY 90 n 101 GLY 90 C SER 91 n 102 SER 91 C ARG 92 n 103 ARG 92 C SER 93 n 104 SER 93 C LEU 94 n 105 LEU 94 C THR 95 n 106 THR 95 C PRO 96 n 107 PRO 96 C CYS 97 n 108 CYS 97 C THR 98 n 109 THR 98 C CYS 99 n 110 CYS 99 C GLY 100 n 111 GLY 100 C SER 101 n 112 SER 101 C SER 102 n 113 SER 102 C ASP 103 n 114 ASP 103 C LEU 104 n 115 LEU 104 C TYR 105 n 116 TYR 105 C LEU 106 n 117 LEU 106 C VAL 107 n 118 VAL 107 C THR 108 n 119 THR 108 C ARG 109 n 120 ARG 109 C HIS 110 n 121 HIS 110 C ALA 111 n 122 ALA 111 C ASP 112 n 123 ASP 112 C VAL 113 n 124 VAL 113 C ILE 114 n 125 ILE 114 C PRO 115 n 126 PRO 115 C VAL 116 n 127 VAL 116 C ARG 117 n 128 ARG 117 C ARG 118 n 129 ARG 118 C ARG 119 n 130 ARG 119 C GLY 120 n 131 GLY 120 C ASP 121 n 132 ASP 121 C SER 122 n 133 SER 122 C ARG 123 n 134 ARG 123 C GLY 124 n 135 GLY 124 C SER 125 n 136 SER 125 C LEU 126 n 137 LEU 126 C LEU 127 n 138 LEU 127 C SER 128 n 139 SER 128 C PRO 129 n 140 PRO 129 C ARG 130 n 141 ARG 130 C PRO 131 n 142 PRO 131 C ILE 132 n 143 ILE 132 C SER 133 n 144 SER 133 C TYR 134 n 145 TYR 134 C LEU 135 n 146 LEU 135 C LYS 136 n 147 LYS 136 C GLY 137 n 148 GLY 137 C SER 138 n 149 SER 138 C SER 139 n 150 SER 139 C GLY 140 n 151 GLY 140 C GLY 141 n 152 GLY 141 C PRO 142 n 153 PRO 142 C LEU 143 n 154 LEU 143 C LEU 144 n 155 LEU 144 C CYS 145 n 156 CYS 145 C PRO 146 n 157 PRO 146 C ALA 147 n 158 ALA 147 C GLY 148 n 159 GLY 148 C HIS 149 n 160 HIS 149 C ALA 150 n 161 ALA 150 C VAL 151 n 162 VAL 151 C GLY 152 n 163 GLY 152 C LEU 153 n 164 LEU 153 C PHE 154 n 165 PHE 154 C ARG 155 n 166 ARG 155 C ALA 156 n 167 ALA 156 C ALA 157 n 168 ALA 157 C VAL 158 n 169 VAL 158 C CYS 159 n 170 CYS 159 C THR 160 n 171 THR 160 C ARG 161 n 172 ARG 161 C GLY 162 n 173 GLY 162 C VAL 163 n 174 VAL 163 C ALA 164 n 175 ALA 164 C LYS 165 n 176 LYS 165 C ALA 166 n 177 ALA 166 C VAL 167 n 178 VAL 167 C ASP 168 n 179 ASP 168 C PHE 169 n 180 PHE 169 C ILE 170 n 181 ILE 170 C PRO 171 n 182 PRO 171 C VAL 172 n 183 VAL 172 C GLU 173 n 184 GLU 173 C ASN 174 n 185 ASN 174 C LEU 175 n 186 LEU 175 C GLU 176 n 187 GLU 176 C THR 177 n 188 THR 177 C THR 178 n 189 THR 178 C MET 179 n 190 MET 179 C n 191 180 C n 192 181 C n 193 182 C n 194 183 C n 195 184 C n 196 185 C n 197 186 C n 198 187 C n 199 188 C n 200 189 C n 1 19 D LYS 20 n 2 LYS 20 D GLY 21 n 3 GLY 21 D SER 22 n 4 SER 22 D VAL 23 n 5 VAL 23 D VAL 24 n 6 VAL 24 D ILE 25 n 7 ILE 25 D VAL 26 n 8 VAL 26 D GLY 27 n 9 GLY 27 D ARG 28 n 10 ARG 28 D ILE 29 n 11 ILE 29 D VAL 30 n 12 VAL 30 D LEU 31 n 13 LEU 31 D SER 32 n 14 SER 32 D GLY 33 n 15 GLY 33 D LYS 34 n 16 LYS 34 D PRO 35 n 17 PRO 35 D ALA 36 n 18 ALA 36 D n 19 37 D n 20 38 D n 21 39 D n 22 40 D n 23 41 D author_and_software_defined_assembly PISA,PQS 4 tetrameric 7830 -125 15660 A CYS 97 A SG CYS 108 1_555 A ZN 901 E ZN ZN 1_555 A CYS 99 A SG CYS 110 1_555 95.5 A CYS 97 A SG CYS 108 1_555 A ZN 901 E ZN ZN 1_555 A CYS 145 A SG CYS 156 1_555 91.4 A CYS 99 A SG CYS 110 1_555 A ZN 901 E ZN ZN 1_555 A CYS 145 A SG CYS 156 1_555 110.4 C CYS 97 C SG CYS 108 1_555 C ZN 201 H ZN ZN 1_555 C CYS 99 C SG CYS 110 1_555 87.2 C CYS 97 C SG CYS 108 1_555 C ZN 201 H ZN ZN 1_555 C CYS 145 C SG CYS 156 1_555 91.4 C CYS 99 C SG CYS 110 1_555 C ZN 201 H ZN ZN 1_555 C CYS 145 C SG CYS 156 1_555 107.1 C CYS 97 C SG CYS 108 1_555 C ZN 201 H ZN ZN 1_555 C HOH 301 K O HOH 1_555 111.2 C CYS 99 C SG CYS 110 1_555 C ZN 201 H ZN ZN 1_555 C HOH 301 K O HOH 1_555 120.2 C CYS 145 C SG CYS 156 1_555 C ZN 201 H ZN ZN 1_555 C HOH 301 K O HOH 1_555 127.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 6 A N TYR 17 B O VAL 30 B O VAL 12 B O VAL 26 B O VAL 8 A N ILE 35 A N ILE 46 A N VAL 36 A N VAL 47 A O PHE 43 A O PHE 54 A N THR 46 A N THR 57 A O TRP 53 A O TRP 64 A N CYS 52 A N CYS 63 A O TRP 85 A O TRP 96 A O LEU 82 A O LEU 93 A N ASN 77 A N ASN 88 A N ILE 64 A N ILE 75 A O VAL 71 A O VAL 82 A N LEU 104 A N LEU 115 A O VAL 116 A O VAL 127 A N ARG 119 A N ARG 130 A O ARG 123 A O ARG 134 A N ARG 130 A N ARG 141 A O ALA 164 A O ALA 175 A O ALA 166 A O ALA 177 A N VAL 158 A N VAL 169 A O VAL 151 A O VAL 162 A N LEU 143 A N LEU 154 A O LEU 144 A O LEU 155 A N TYR 105 A N TYR 116 B N ALA 36 B N ALA 18 D O VAL 30 D O VAL 12 D O VAL 23 D O VAL 5 C N THR 63 C N THR 74 B N ALA 36 B N ALA 18 D O VAL 30 D O VAL 12 D O VAL 26 D O VAL 8 C N ILE 35 C N ILE 46 C N VAL 36 C N VAL 47 C O PHE 43 C O PHE 54 C N ILE 48 C N ILE 59 C O VAL 51 C O VAL 62 C N CYS 52 C N CYS 63 C O TRP 85 C O TRP 96 C O LEU 82 C O LEU 93 C N ASN 77 C N ASN 88 C N ARG 130 C N ARG 141 C O ALA 164 C O ALA 175 C O ASP 168 C O ASP 179 C N ALA 156 C N ALA 167 C O VAL 151 C O VAL 162 C N LEU 143 C N LEU 154 C O LEU 144 C O LEU 155 C N TYR 105 C N TYR 116 C N LEU 106 C N LEU 117 C O ILE 114 C O ILE 125 C N ARG 117 C N ARG 128 C O SER 125 C O SER 136 C N GLY 124 C N GLY 135 C O VAL 167 C O VAL 178 1 A MET -10 A MET 1 1 Y 1 A ALA -9 A ALA 2 1 Y 1 A SER -8 A SER 3 1 Y 1 A MET -7 A MET 4 1 Y 1 A THR -6 A THR 5 1 Y 1 A GLY -5 A GLY 6 1 Y 1 A GLY -4 A GLY 7 1 Y 1 A GLN -3 A GLN 8 1 Y 1 A GLN -2 A GLN 9 1 Y 1 A SER 183 A SER 194 1 Y 1 A HIS 184 A HIS 195 1 Y 1 A HIS 185 A HIS 196 1 Y 1 A HIS 186 A HIS 197 1 Y 1 A HIS 187 A HIS 198 1 Y 1 A HIS 188 A HIS 199 1 Y 1 A HIS 189 A HIS 200 1 Y 1 C MET -10 C MET 1 1 Y 1 C ALA -9 C ALA 2 1 Y 1 C SER -8 C SER 3 1 Y 1 C MET -7 C MET 4 1 Y 1 C THR -6 C THR 5 1 Y 1 C GLY -5 C GLY 6 1 Y 1 C GLY -4 C GLY 7 1 Y 1 C GLN -3 C GLN 8 1 Y 1 C GLN -2 C GLN 9 1 Y 1 C MET -1 C MET 10 1 Y 1 C GLY 0 C GLY 11 1 Y 1 C ALA 1 C ALA 12 1 Y 1 C PRO 2 C PRO 13 1 Y 1 C ILE 3 C ILE 14 1 Y 1 C THR 4 C THR 15 1 Y 1 C ALA 5 C ALA 16 1 Y 1 C TYR 6 C TYR 17 1 Y 1 C ALA 7 C ALA 18 1 Y 1 C GLN 8 C GLN 19 1 Y 1 C GLN 9 C GLN 20 1 Y 1 C THR 10 C THR 21 1 Y 1 C ARG 11 C ARG 22 1 Y 1 C GLY 12 C GLY 23 1 Y 1 C LEU 13 C LEU 24 1 Y 1 C LEU 14 C LEU 25 1 Y 1 C GLY 15 C GLY 26 1 Y 1 C CYS 16 C CYS 27 1 Y 1 C ILE 17 C ILE 28 1 Y 1 C ILE 18 C ILE 29 1 Y 1 C THR 19 C THR 30 1 Y 1 C SER 20 C SER 31 1 Y 1 C LEU 21 C LEU 32 1 Y 1 C THR 22 C THR 33 1 Y 1 C GLY 23 C GLY 34 1 Y 1 C ARG 24 C ARG 35 1 Y 1 C ASP 25 C ASP 36 1 Y 1 C LYS 26 C LYS 37 1 Y 1 C ASN 27 C ASN 38 1 Y 1 C GLN 28 C GLN 39 1 Y 1 C ARG 180 C ARG 191 1 Y 1 C SER 181 C SER 192 1 Y 1 C GLY 182 C GLY 193 1 Y 1 C SER 183 C SER 194 1 Y 1 C HIS 184 C HIS 195 1 Y 1 C HIS 185 C HIS 196 1 Y 1 C HIS 186 C HIS 197 1 Y 1 C HIS 187 C HIS 198 1 Y 1 C HIS 188 C HIS 199 1 Y 1 C HIS 189 C HIS 200 1 Y 1 D LYS 19 D LYS 1 1 Y 1 D ILE 37 D ILE 19 1 Y 1 D ILE 38 D ILE 20 1 Y 1 D PRO 39 D PRO 21 1 Y 1 D LYS 40 D LYS 22 1 Y 1 D LYS 41 D LYS 23 1 Y 1 A A ZN O ZN HOH 901 1000 1.54 1 A TYR 105 0.065 SIDE CHAIN 1 A ALA 1 79.75 56.27 1 A PHE 43 -156.05 -156.11 1 A ASN 49 39.65 50.59 1 A HIS 57 -69.68 24.93 1 A LYS 68 -84.96 34.77 1 A CYS 99 -166.27 -0.74 1 A SER 122 -140.36 26.91 1 A PRO 146 -56.29 -7.86 1 A ARG 161 52.57 11.89 1 C ASP 121 -64.48 0.85 1 C SER 122 -153.88 21.32 0.295 0.178 2.6 8.0 1393 14291 1 FOURIER SYNTHESIS PDB Entry 2O8M 2.6 8.0 135 2935 42 0 2758 0.008 1.937 1.497 0.2807 0.4102 2.71 104 1025 78.2 27.999 2.60 50 2OBO 22055 3.0 0.069 1 2.2 99.0 2.60 2.66 2.2 1443 0.466 1 2.2 99.3 data collection ADSC Quantum model building X-PLOR refinement X-PLOR 98.1 data reduction HKL-2000 data scaling SCALEPACK phasing X-PLOR Structure of HEPATITIS C VIRAL NS3 protease domain complexed with NS4A peptide and ketoamide SCH476776 1 N N 2 N N 1 N N 2 N N 3 N N 4 N N 5 N N 3 N N 6 N N 6 N N 6 N N 6 N N A GLY 12 A GLY 23 HELX_P A GLY 23 A GLY 34 1 1 12 A TYR 56 A TYR 67 HELX_P A GLY 60 A GLY 71 1 2 5 A ILE 132 A ILE 143 HELX_P A LYS 136 A LYS 147 1 3 5 A VAL 172 A VAL 183 HELX_P A GLY 182 A GLY 193 1 4 11 C TYR 56 C TYR 67 HELX_P C GLY 60 C GLY 71 1 5 5 C ILE 132 C ILE 143 HELX_P C LYS 136 C LYS 147 1 6 5 C VAL 172 C VAL 183 HELX_P C THR 178 C THR 189 1 7 7 disulf 2.992 C CYS 97 C SG CYS 108 1_555 C CYS 99 C SG CYS 110 1_555 covale 2.036 none A CYS 16 A SG CYS 27 1_555 A BME 902 F S2 BME 1_555 covale 1.461 none A SER 139 A OG SER 150 1_555 A HUD 903 G C33 HUD 1_555 metalc 1.925 A CYS 97 A SG CYS 108 1_555 A ZN 901 E ZN ZN 1_555 metalc 2.451 A CYS 99 A SG CYS 110 1_555 A ZN 901 E ZN ZN 1_555 metalc 2.278 A CYS 145 A SG CYS 156 1_555 A ZN 901 E ZN ZN 1_555 metalc 2.136 C CYS 97 C SG CYS 108 1_555 C ZN 201 H ZN ZN 1_555 metalc 2.201 C CYS 99 C SG CYS 110 1_555 C ZN 201 H ZN ZN 1_555 metalc 2.069 C CYS 145 C SG CYS 156 1_555 C ZN 201 H ZN ZN 1_555 metalc 1.874 C ZN 201 H ZN ZN 1_555 C HOH 301 K O HOH 1_555 HYDROLASE/HYDROLASE INHIBITOR ketoamide inhibitor, Viral Protein, HYDROLASE-HYDROLASE INHIBITOR complex A ALA 1 A ALA 12 1 A PRO 2 A PRO 13 -0.01 Q91RS4_9HEPC UNP 1 1 Q91RS4 APITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQ DLVGWPAPQGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCT RGVAKAVDFIPVENLETTMRS Q9QP06_9HEPC UNP 2 1678 Q9QP06 GSVVIVGRIVLSGKPAIIP 1 181 2OBO 1 181 Q91RS4 A 1 12 192 1678 1696 2OBO 21 39 Q9QP06 B 2 3 21 1 181 2OBO 1 181 Q91RS4 C 1 12 192 1678 1696 2OBO 21 39 Q9QP06 D 2 3 21 1 expression tag MET -10 2OBO A Q91RS4 UNP 1 1 expression tag ALA -9 2OBO A Q91RS4 UNP 2 1 expression tag SER -8 2OBO A Q91RS4 UNP 3 1 expression tag MET -7 2OBO A Q91RS4 UNP 4 1 expression tag THR -6 2OBO A Q91RS4 UNP 5 1 expression tag GLY -5 2OBO A Q91RS4 UNP 6 1 expression tag GLY -4 2OBO A Q91RS4 UNP 7 1 expression tag GLN -3 2OBO A Q91RS4 UNP 8 1 expression tag GLN -2 2OBO A Q91RS4 UNP 9 1 expression tag MET -1 2OBO A Q91RS4 UNP 10 1 expression tag GLY 0 2OBO A Q91RS4 UNP 11 1 ALA conflict THR 40 2OBO A Q91RS4 UNP 40 51 1 ALA conflict SER 91 2OBO A Q91RS4 UNP 91 102 1 expression tag GLY 182 2OBO A Q91RS4 UNP 193 1 expression tag SER 183 2OBO A Q91RS4 UNP 194 1 expression tag HIS 184 2OBO A Q91RS4 UNP 195 1 expression tag HIS 185 2OBO A Q91RS4 UNP 196 1 expression tag HIS 186 2OBO A Q91RS4 UNP 197 1 expression tag HIS 187 2OBO A Q91RS4 UNP 198 1 expression tag HIS 188 2OBO A Q91RS4 UNP 199 1 expression tag HIS 189 2OBO A Q91RS4 UNP 200 2 expression tag LYS 19 2OBO B Q9QP06 UNP 1 2 expression tag LYS 20 2OBO B Q9QP06 UNP 2 2 expression tag LYS 40 2OBO B Q9QP06 UNP 22 2 expression tag LYS 41 2OBO B Q9QP06 UNP 23 3 expression tag MET -10 2OBO C Q91RS4 UNP 1 3 expression tag ALA -9 2OBO C Q91RS4 UNP 2 3 expression tag SER -8 2OBO C Q91RS4 UNP 3 3 expression tag MET -7 2OBO C Q91RS4 UNP 4 3 expression tag THR -6 2OBO C Q91RS4 UNP 5 3 expression tag GLY -5 2OBO C Q91RS4 UNP 6 3 expression tag GLY -4 2OBO C Q91RS4 UNP 7 3 expression tag GLN -3 2OBO C Q91RS4 UNP 8 3 expression tag GLN -2 2OBO C Q91RS4 UNP 9 3 expression tag MET -1 2OBO C Q91RS4 UNP 10 3 expression tag GLY 0 2OBO C Q91RS4 UNP 11 3 ALA conflict THR 40 2OBO C Q91RS4 UNP 40 51 3 ALA conflict SER 91 2OBO C Q91RS4 UNP 91 102 3 expression tag GLY 182 2OBO C Q91RS4 UNP 193 3 expression tag SER 183 2OBO C Q91RS4 UNP 194 3 expression tag HIS 184 2OBO C Q91RS4 UNP 195 3 expression tag HIS 185 2OBO C Q91RS4 UNP 196 3 expression tag HIS 186 2OBO C Q91RS4 UNP 197 3 expression tag HIS 187 2OBO C Q91RS4 UNP 198 3 expression tag HIS 188 2OBO C Q91RS4 UNP 199 3 expression tag HIS 189 2OBO C Q91RS4 UNP 200 4 expression tag LYS 19 2OBO D Q9QP06 UNP 1 4 expression tag LYS 20 2OBO D Q9QP06 UNP 2 4 expression tag LYS 40 2OBO D Q9QP06 UNP 22 4 expression tag LYS 41 2OBO D Q9QP06 UNP 23 7 2 7 3 7 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 6 A TYR 17 A GLN 9 A GLN 20 B VAL 24 B VAL 6 B VAL 30 B VAL 12 A VAL 33 A VAL 44 A SER 37 A SER 48 A THR 42 A THR 53 A ILE 48 A ILE 59 A VAL 51 A VAL 62 A VAL 55 A VAL 66 A LEU 82 A LEU 93 A PRO 86 A PRO 97 A TYR 75 A TYR 86 A ASN 77 A ASN 88 A ILE 64 A ILE 75 A SER 66 A SER 77 A GLY 69 A GLY 80 A VAL 71 A VAL 82 A ASP 103 A ASP 114 A VAL 107 A VAL 118 A VAL 113 A VAL 124 A GLY 120 A GLY 131 A ARG 123 A ARG 134 A PRO 131 A PRO 142 A VAL 163 A VAL 174 A PRO 171 A PRO 182 A ALA 150 A ALA 161 A THR 160 A THR 171 A PRO 142 A PRO 153 A LEU 144 A LEU 155 A ASP 103 A ASP 114 A VAL 107 A VAL 118 B ALA 36 B ALA 18 B ILE 38 B ILE 20 D SER 22 D SER 4 D VAL 30 D VAL 12 C THR 63 C THR 74 C ILE 64 C ILE 75 B ALA 36 B ALA 18 B ILE 38 B ILE 20 D SER 22 D SER 4 D VAL 30 D VAL 12 C VAL 33 C VAL 44 C SER 37 C SER 48 C THR 42 C THR 53 C ILE 48 C ILE 59 C VAL 51 C VAL 62 C VAL 55 C VAL 66 C LEU 82 C LEU 93 C PRO 86 C PRO 97 C TYR 75 C TYR 86 C ASN 77 C ASN 88 C ARG 130 C ARG 141 C PRO 131 C PRO 142 C VAL 163 C VAL 174 C PRO 171 C PRO 182 C ALA 150 C ALA 161 C THR 160 C THR 171 C PRO 142 C PRO 153 C LEU 144 C LEU 155 C ASP 103 C ASP 114 C VAL 107 C VAL 118 C VAL 113 C VAL 124 C GLY 120 C GLY 131 C ARG 123 C ARG 134 C LEU 126 C LEU 137 C VAL 163 C VAL 174 C PRO 171 C PRO 182 BINDING SITE FOR RESIDUE ZN A 901 A ZN 901 Software 5 BINDING SITE FOR RESIDUE BME A 902 A BME 902 Software 4 BINDING SITE FOR RESIDUE HUD A 903 A HUD 903 Software 10 BINDING SITE FOR RESIDUE ZN C 201 C ZN 201 Software 4 A CYS 97 A CYS 108 5 1_555 A THR 98 A THR 109 5 1_555 A CYS 99 A CYS 110 5 1_555 A CYS 145 A CYS 156 5 1_555 A HOH 1000 I HOH 5 1_555 A LEU 13 A LEU 24 4 1_555 A CYS 16 A CYS 27 4 1_555 A ILE 17 A ILE 28 4 1_555 A THR 38 A THR 49 4 1_555 A GLN 41 A GLN 52 10 1_555 A HIS 57 A HIS 68 10 1_555 A LYS 136 A LYS 147 10 1_555 A GLY 137 A GLY 148 10 1_555 A SER 138 A SER 149 10 1_555 A SER 139 A SER 150 10 1_555 A ARG 155 A ARG 166 10 1_555 A ALA 156 A ALA 167 10 1_555 A ALA 157 A ALA 168 10 1_555 A ASP 168 A ASP 179 10 1_555 C CYS 97 C CYS 108 4 1_555 C CYS 99 C CYS 110 4 1_555 C CYS 145 C CYS 156 4 1_555 C HOH 301 K HOH 4 1_555 155 H 3 2