0.03136 0.00000 0.00704 0.00000 0.01285 0.00000 0.00000 0.00000 0.02340 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 102.660 90.000 31.890 77.790 43.810 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N C N 76 N O N 77 N C N 78 N O N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N N N 86 S C N 87 N C N 88 N O N 89 N C N 90 N C N 91 N C N 92 N O N 93 N N N 94 N O N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N N N 106 S C N 107 N C N 108 N O N 109 N C N 110 N C N 111 N C N 112 N O N 113 N O N 114 N O N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N N N 125 N C N 126 N C N 127 N O N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N N N 135 S C N 136 N C N 137 N O N 138 N C Y 139 N C Y 140 N N Y 141 N C Y 142 N C Y 143 N N N 144 N O N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N O N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N O N 232 N C N 233 N C N 234 N SE N 235 N C N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 R C N 306 N O N 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N N Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C N 356 N O N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C N 374 N C N 375 N C N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N doub N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing Y 136 N sing Y 137 N doub Y 138 N doub N 139 N sing Y 140 N sing N 141 N sing Y 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing Y 244 N doub Y 245 N sing Y 246 N sing N 247 N sing Y 248 N doub N 249 N sing Y 250 N doub N 251 N sing Y 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing Y 313 N doub Y 314 N sing Y 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N sing Y 322 N doub N 323 N sing Y 324 N doub N 325 N sing Y 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing Y 341 N doub Y 342 N sing Y 343 N sing N 344 N sing Y 345 N doub N 346 N sing Y 347 N doub N 348 N sing Y 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing To be published 0353 Crystal structure of hypothetical protein (JCVI_PEP_1096665735785) from an environmental metagenome (unidentified marine microbe), Sorcerer II Global Ocean Sampling experiment at 1.70 A resolution 10.2210/pdb2od4/pdb pdb_00002od4 100 1 Flat mirror (vertical focusing) CCD 2006-11-19 MARMOSAIC 325 mm CCD Single crystal Si(111) bent monochromator (horizontal focusing) MAD M x-ray 1 0.91837 1.0 0.97966 1.0 BL11-1 SSRL 0.91837, 0.97966 SYNCHROTRON SSRL BEAMLINE BL11-1 11721.772 hypothetical protein 2 man polymer 35.453 CHLORIDE ION 4 syn non-polymer 62.068 1,2-ETHANEDIOL 1 syn non-polymer 18.015 water 188 nat water no yes G(MSE)FAGSIP(MSE)YIRVVSITAQSKLQFD(MSE)TVTYFENVWSPKVISLGAISAEFVQSNENSG(MSE)YIIHYP DKQTAISVFDKIKPEVDEVRTQNRIQITEGKRLFRVD GMFAGSIPMYIRVVSITAQSKLQFDMTVTYFENVWSPKVISLGAISAEFVQSNENSGMYIIHYPDKQTAISVFDKIKPEV DEVRTQNRIQITEGKRLFRVD A,B 367439 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia sample SYNTHETIC GENE: The gene product was based on JCVI_PEP_1096665735785 from the Sorcerer II Global Ocean Sampling experiment 360281 uncultured marine organism 562 Escherichia coli Plasmid 1 2.26 45.59 VAPOR DIFFUSION, SITTING DROP, NANODROP 4.5 0.2M Li2SO4, 2.5M NaCl, 0.1M Acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative software pdbx_struct_assembly_auth_evidence chem_comp_atom chem_comp_bond database_2 struct_conn struct_site repository Initial release Version format compliance Advisory Version format compliance Refinement description Author supporting evidence Data collection Database references Derived calculations 1 0 2007-01-23 1 1 2008-05-01 1 2 2011-07-13 1 3 2017-10-18 1 4 2017-10-25 1 5 2023-12-27 _software.classification _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BIOMOLECULE: 1,2 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 2 CHAINS. SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE. SEQUENCE (1) THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. (2) THE SEQUENCE OF THE PROTEIN WAS NOT AVAILABLE IN THE UNP DATABASE AT THE TIME OF PROCESSING. (3) PRODUCT OF THE EXPRESSED SYNTHETIC GENE WAS BASED ON THE PREDICTED SEQUENCE OF ACCESSION ID JCVI_PEP_1096665735785 FROM THE J. CRAIG VENTER INSTITUTE. Y RCSB Y RCSB 2006-12-21 REL REL CL CHLORIDE ION EDO 1,2-ETHANEDIOL HOH water CL 3 2 CL CL 101 A CL 4 2 CL CL 102 A EDO 1 3 EDO EDO 103 A CL 2 2 CL CL 101 B CL 5 2 CL CL 102 B HOH 6 4 HOH HOH 104 A HOH 7 4 HOH HOH 105 A HOH 15 4 HOH HOH 106 A HOH 16 4 HOH HOH 107 A HOH 17 4 HOH HOH 108 A HOH 19 4 HOH HOH 109 A HOH 20 4 HOH HOH 110 A HOH 22 4 HOH HOH 111 A HOH 23 4 HOH HOH 112 A HOH 24 4 HOH HOH 113 A HOH 25 4 HOH HOH 114 A HOH 27 4 HOH HOH 115 A HOH 29 4 HOH HOH 116 A HOH 31 4 HOH HOH 117 A HOH 33 4 HOH HOH 118 A HOH 36 4 HOH HOH 119 A HOH 37 4 HOH HOH 120 A HOH 38 4 HOH HOH 121 A HOH 39 4 HOH HOH 122 A HOH 40 4 HOH HOH 123 A HOH 45 4 HOH HOH 124 A HOH 49 4 HOH HOH 125 A HOH 52 4 HOH HOH 126 A HOH 54 4 HOH HOH 127 A HOH 55 4 HOH HOH 128 A HOH 57 4 HOH HOH 129 A HOH 59 4 HOH HOH 130 A HOH 60 4 HOH HOH 131 A HOH 61 4 HOH HOH 132 A HOH 63 4 HOH HOH 133 A HOH 64 4 HOH HOH 134 A HOH 69 4 HOH HOH 135 A HOH 70 4 HOH HOH 136 A HOH 76 4 HOH HOH 137 A HOH 78 4 HOH HOH 138 A HOH 79 4 HOH HOH 139 A HOH 82 4 HOH HOH 140 A HOH 83 4 HOH HOH 141 A HOH 84 4 HOH HOH 142 A HOH 88 4 HOH HOH 143 A HOH 90 4 HOH HOH 144 A HOH 93 4 HOH HOH 145 A HOH 96 4 HOH HOH 146 A HOH 98 4 HOH HOH 147 A HOH 101 4 HOH HOH 148 A HOH 104 4 HOH HOH 149 A HOH 106 4 HOH HOH 150 A HOH 107 4 HOH HOH 151 A HOH 113 4 HOH HOH 152 A HOH 116 4 HOH HOH 153 A HOH 117 4 HOH HOH 154 A HOH 119 4 HOH HOH 155 A HOH 121 4 HOH HOH 156 A HOH 122 4 HOH HOH 157 A HOH 124 4 HOH HOH 158 A HOH 125 4 HOH HOH 159 A HOH 127 4 HOH HOH 160 A HOH 131 4 HOH HOH 161 A HOH 132 4 HOH HOH 162 A HOH 133 4 HOH HOH 163 A HOH 138 4 HOH HOH 164 A HOH 139 4 HOH HOH 165 A HOH 142 4 HOH HOH 166 A HOH 145 4 HOH HOH 167 A HOH 147 4 HOH HOH 168 A HOH 148 4 HOH HOH 169 A HOH 159 4 HOH HOH 170 A HOH 160 4 HOH HOH 171 A HOH 161 4 HOH HOH 172 A HOH 162 4 HOH HOH 173 A HOH 164 4 HOH HOH 174 A HOH 165 4 HOH HOH 175 A HOH 167 4 HOH HOH 176 A HOH 169 4 HOH HOH 177 A HOH 171 4 HOH HOH 178 A HOH 172 4 HOH HOH 179 A HOH 174 4 HOH HOH 180 A HOH 175 4 HOH HOH 181 A HOH 178 4 HOH HOH 182 A HOH 183 4 HOH HOH 183 A HOH 186 4 HOH HOH 184 A HOH 188 4 HOH HOH 185 A HOH 190 4 HOH HOH 186 A HOH 191 4 HOH HOH 187 A HOH 8 4 HOH HOH 103 B HOH 9 4 HOH HOH 104 B HOH 10 4 HOH HOH 105 B HOH 11 4 HOH HOH 106 B HOH 12 4 HOH HOH 107 B HOH 13 4 HOH HOH 108 B HOH 14 4 HOH HOH 109 B HOH 18 4 HOH HOH 110 B HOH 21 4 HOH HOH 111 B HOH 26 4 HOH HOH 112 B HOH 28 4 HOH HOH 113 B HOH 30 4 HOH HOH 114 B HOH 32 4 HOH HOH 115 B HOH 34 4 HOH HOH 116 B HOH 35 4 HOH HOH 117 B HOH 41 4 HOH HOH 118 B HOH 42 4 HOH HOH 119 B HOH 43 4 HOH HOH 120 B HOH 44 4 HOH HOH 121 B HOH 46 4 HOH HOH 122 B HOH 47 4 HOH HOH 123 B HOH 48 4 HOH HOH 124 B HOH 50 4 HOH HOH 125 B HOH 51 4 HOH HOH 126 B HOH 53 4 HOH HOH 127 B HOH 56 4 HOH HOH 128 B HOH 58 4 HOH HOH 129 B HOH 62 4 HOH HOH 130 B HOH 65 4 HOH HOH 131 B HOH 66 4 HOH HOH 132 B HOH 67 4 HOH HOH 133 B HOH 68 4 HOH HOH 134 B HOH 71 4 HOH HOH 135 B HOH 72 4 HOH HOH 136 B HOH 73 4 HOH HOH 137 B HOH 74 4 HOH HOH 138 B HOH 75 4 HOH HOH 139 B HOH 77 4 HOH HOH 140 B HOH 80 4 HOH HOH 141 B HOH 81 4 HOH HOH 142 B HOH 85 4 HOH HOH 143 B HOH 86 4 HOH HOH 144 B HOH 87 4 HOH HOH 145 B HOH 89 4 HOH HOH 146 B HOH 91 4 HOH HOH 147 B HOH 92 4 HOH HOH 148 B HOH 94 4 HOH HOH 149 B HOH 95 4 HOH HOH 150 B HOH 97 4 HOH HOH 151 B HOH 99 4 HOH HOH 152 B HOH 100 4 HOH HOH 153 B HOH 102 4 HOH HOH 154 B HOH 103 4 HOH HOH 155 B HOH 105 4 HOH HOH 156 B HOH 108 4 HOH HOH 157 B HOH 109 4 HOH HOH 158 B HOH 110 4 HOH HOH 159 B HOH 111 4 HOH HOH 160 B HOH 112 4 HOH HOH 161 B HOH 114 4 HOH HOH 162 B HOH 115 4 HOH HOH 163 B HOH 118 4 HOH HOH 164 B HOH 120 4 HOH HOH 165 B HOH 123 4 HOH HOH 166 B HOH 126 4 HOH HOH 167 B HOH 128 4 HOH HOH 168 B HOH 129 4 HOH HOH 169 B HOH 130 4 HOH HOH 170 B HOH 134 4 HOH HOH 171 B HOH 135 4 HOH HOH 172 B HOH 136 4 HOH HOH 173 B HOH 137 4 HOH HOH 174 B HOH 140 4 HOH HOH 175 B HOH 141 4 HOH HOH 176 B HOH 143 4 HOH HOH 177 B HOH 144 4 HOH HOH 178 B HOH 146 4 HOH HOH 179 B HOH 149 4 HOH HOH 180 B HOH 150 4 HOH HOH 181 B HOH 151 4 HOH HOH 182 B HOH 152 4 HOH HOH 183 B HOH 153 4 HOH HOH 184 B HOH 154 4 HOH HOH 185 B HOH 155 4 HOH HOH 186 B HOH 156 4 HOH HOH 187 B HOH 157 4 HOH HOH 188 B HOH 158 4 HOH HOH 189 B HOH 163 4 HOH HOH 190 B HOH 166 4 HOH HOH 191 B HOH 168 4 HOH HOH 192 B HOH 170 4 HOH HOH 193 B HOH 173 4 HOH HOH 194 B HOH 176 4 HOH HOH 195 B HOH 177 4 HOH HOH 196 B HOH 179 4 HOH HOH 197 B HOH 180 4 HOH HOH 198 B HOH 181 4 HOH HOH 199 B HOH 182 4 HOH HOH 200 B HOH 184 4 HOH HOH 201 B HOH 185 4 HOH HOH 202 B HOH 187 4 HOH HOH 203 B HOH 189 4 HOH HOH 204 B HOH 192 4 HOH HOH 205 B HOH 193 4 HOH HOH 206 B GLY 0 n 1 GLY 0 A MSE 1 n 2 MSE 1 A PHE 2 n 3 PHE 2 A ALA 3 n 4 ALA 3 A GLY 4 n 5 GLY 4 A SER 5 n 6 SER 5 A ILE 6 n 7 ILE 6 A PRO 7 n 8 PRO 7 A MSE 8 n 9 MSE 8 A TYR 9 n 10 TYR 9 A ILE 10 n 11 ILE 10 A ARG 11 n 12 ARG 11 A VAL 12 n 13 VAL 12 A VAL 13 n 14 VAL 13 A SER 14 n 15 SER 14 A ILE 15 n 16 ILE 15 A THR 16 n 17 THR 16 A ALA 17 n 18 ALA 17 A GLN 18 n 19 GLN 18 A SER 19 n 20 SER 19 A LYS 20 n 21 LYS 20 A LEU 21 n 22 LEU 21 A GLN 22 n 23 GLN 22 A PHE 23 n 24 PHE 23 A ASP 24 n 25 ASP 24 A MSE 25 n 26 MSE 25 A THR 26 n 27 THR 26 A VAL 27 n 28 VAL 27 A THR 28 n 29 THR 28 A TYR 29 n 30 TYR 29 A PHE 30 n 31 PHE 30 A GLU 31 n 32 GLU 31 A ASN 32 n 33 ASN 32 A VAL 33 n 34 VAL 33 A TRP 34 n 35 TRP 34 A SER 35 n 36 SER 35 A PRO 36 n 37 PRO 36 A LYS 37 n 38 LYS 37 A VAL 38 n 39 VAL 38 A ILE 39 n 40 ILE 39 A SER 40 n 41 SER 40 A LEU 41 n 42 LEU 41 A GLY 42 n 43 GLY 42 A ALA 43 n 44 ALA 43 A ILE 44 n 45 ILE 44 A SER 45 n 46 SER 45 A ALA 46 n 47 ALA 46 A GLU 47 n 48 GLU 47 A PHE 48 n 49 PHE 48 A VAL 49 n 50 VAL 49 A GLN 50 n 51 GLN 50 A SER 51 n 52 SER 51 A ASN 52 n 53 ASN 52 A GLU 53 n 54 GLU 53 A ASN 54 n 55 ASN 54 A SER 55 n 56 SER 55 A GLY 56 n 57 GLY 56 A MSE 57 n 58 MSE 57 A TYR 58 n 59 TYR 58 A ILE 59 n 60 ILE 59 A ILE 60 n 61 ILE 60 A HIS 61 n 62 HIS 61 A TYR 62 n 63 TYR 62 A PRO 63 n 64 PRO 63 A ASP 64 n 65 ASP 64 A LYS 65 n 66 LYS 65 A GLN 66 n 67 GLN 66 A THR 67 n 68 THR 67 A ALA 68 n 69 ALA 68 A ILE 69 n 70 ILE 69 A SER 70 n 71 SER 70 A VAL 71 n 72 VAL 71 A PHE 72 n 73 PHE 72 A ASP 73 n 74 ASP 73 A LYS 74 n 75 LYS 74 A ILE 75 n 76 ILE 75 A LYS 76 n 77 LYS 76 A PRO 77 n 78 PRO 77 A GLU 78 n 79 GLU 78 A VAL 79 n 80 VAL 79 A ASP 80 n 81 ASP 80 A GLU 81 n 82 GLU 81 A VAL 82 n 83 VAL 82 A ARG 83 n 84 ARG 83 A THR 84 n 85 THR 84 A GLN 85 n 86 GLN 85 A ASN 86 n 87 ASN 86 A ARG 87 n 88 ARG 87 A ILE 88 n 89 ILE 88 A GLN 89 n 90 GLN 89 A ILE 90 n 91 ILE 90 A THR 91 n 92 THR 91 A GLU 92 n 93 GLU 92 A GLY 93 n 94 GLY 93 A LYS 94 n 95 LYS 94 A ARG 95 n 96 ARG 95 A LEU 96 n 97 LEU 96 A PHE 97 n 98 PHE 97 A ARG 98 n 99 ARG 98 A VAL 99 n 100 VAL 99 A ASP 100 n 101 ASP 100 A GLY 0 n 1 GLY 0 B MSE 1 n 2 MSE 1 B PHE 2 n 3 PHE 2 B ALA 3 n 4 ALA 3 B GLY 4 n 5 GLY 4 B SER 5 n 6 SER 5 B ILE 6 n 7 ILE 6 B PRO 7 n 8 PRO 7 B MSE 8 n 9 MSE 8 B TYR 9 n 10 TYR 9 B ILE 10 n 11 ILE 10 B ARG 11 n 12 ARG 11 B VAL 12 n 13 VAL 12 B VAL 13 n 14 VAL 13 B SER 14 n 15 SER 14 B ILE 15 n 16 ILE 15 B THR 16 n 17 THR 16 B ALA 17 n 18 ALA 17 B GLN 18 n 19 GLN 18 B SER 19 n 20 SER 19 B LYS 20 n 21 LYS 20 B LEU 21 n 22 LEU 21 B GLN 22 n 23 GLN 22 B PHE 23 n 24 PHE 23 B ASP 24 n 25 ASP 24 B MSE 25 n 26 MSE 25 B THR 26 n 27 THR 26 B VAL 27 n 28 VAL 27 B THR 28 n 29 THR 28 B TYR 29 n 30 TYR 29 B PHE 30 n 31 PHE 30 B GLU 31 n 32 GLU 31 B ASN 32 n 33 ASN 32 B VAL 33 n 34 VAL 33 B TRP 34 n 35 TRP 34 B SER 35 n 36 SER 35 B PRO 36 n 37 PRO 36 B LYS 37 n 38 LYS 37 B VAL 38 n 39 VAL 38 B ILE 39 n 40 ILE 39 B SER 40 n 41 SER 40 B LEU 41 n 42 LEU 41 B GLY 42 n 43 GLY 42 B ALA 43 n 44 ALA 43 B ILE 44 n 45 ILE 44 B SER 45 n 46 SER 45 B ALA 46 n 47 ALA 46 B GLU 47 n 48 GLU 47 B PHE 48 n 49 PHE 48 B VAL 49 n 50 VAL 49 B GLN 50 n 51 GLN 50 B SER 51 n 52 SER 51 B ASN 52 n 53 ASN 52 B GLU 53 n 54 GLU 53 B ASN 54 n 55 ASN 54 B SER 55 n 56 SER 55 B GLY 56 n 57 GLY 56 B MSE 57 n 58 MSE 57 B TYR 58 n 59 TYR 58 B ILE 59 n 60 ILE 59 B ILE 60 n 61 ILE 60 B HIS 61 n 62 HIS 61 B TYR 62 n 63 TYR 62 B PRO 63 n 64 PRO 63 B ASP 64 n 65 ASP 64 B LYS 65 n 66 LYS 65 B GLN 66 n 67 GLN 66 B THR 67 n 68 THR 67 B ALA 68 n 69 ALA 68 B ILE 69 n 70 ILE 69 B SER 70 n 71 SER 70 B VAL 71 n 72 VAL 71 B PHE 72 n 73 PHE 72 B ASP 73 n 74 ASP 73 B LYS 74 n 75 LYS 74 B ILE 75 n 76 ILE 75 B LYS 76 n 77 LYS 76 B PRO 77 n 78 PRO 77 B GLU 78 n 79 GLU 78 B VAL 79 n 80 VAL 79 B ASP 80 n 81 ASP 80 B GLU 81 n 82 GLU 81 B VAL 82 n 83 VAL 82 B ARG 83 n 84 ARG 83 B THR 84 n 85 THR 84 B GLN 85 n 86 GLN 85 B ASN 86 n 87 ASN 86 B ARG 87 n 88 ARG 87 B ILE 88 n 89 ILE 88 B GLN 89 n 90 GLN 89 B ILE 90 n 91 ILE 90 B THR 91 n 92 THR 91 B GLU 92 n 93 GLU 92 B GLY 93 n 94 GLY 93 B LYS 94 n 95 LYS 94 B ARG 95 n 96 ARG 95 B LEU 96 n 97 LEU 96 B PHE 97 n 98 PHE 97 B ARG 98 n 99 ARG 98 B VAL 99 n 100 VAL 99 B ASP 100 n 101 ASP 100 B 0.3985 0.4561 0.0990 0.5512 0.3953 2.7460 -0.0268 0.0179 -0.0179 -0.0763 0.0084 -0.0474 -0.1476 -0.0776 0.0184 -0.1134 0.0212 -0.0262 -0.0025 -0.0051 0.0122 refined 4.0350 36.6640 29.8930 X-RAY DIFFRACTION 0.3023 -0.0235 -0.2899 0.7154 0.0084 1.2012 -0.0044 -0.0186 -0.0115 0.0140 -0.0012 -0.0187 0.1186 -0.0974 0.0056 -0.0861 0.0104 -0.0187 -0.0072 -0.0034 0.0187 refined -0.9800 25.3830 43.7510 X-RAY DIFFRACTION A 0 A 1 A 100 A 101 X-RAY DIFFRACTION 1 ALL B 0 B 1 B 100 B 101 X-RAY DIFFRACTION 2 ALL author_and_software_defined_assembly PISA 2 dimeric gel filtration light scattering 3350 -58 10670 A MSE 1 SELENOMETHIONINE A MSE 2 MET A MSE 8 SELENOMETHIONINE A MSE 9 MET A MSE 25 SELENOMETHIONINE A MSE 26 MET A MSE 57 SELENOMETHIONINE A MSE 58 MET B MSE 1 SELENOMETHIONINE B MSE 2 MET B MSE 8 SELENOMETHIONINE B MSE 9 MET B MSE 25 SELENOMETHIONINE B MSE 26 MET B MSE 57 SELENOMETHIONINE B MSE 58 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 11 A N ARG 12 A O ILE 60 A O ILE 61 A O ILE 59 A O ILE 60 A N GLU 47 A N GLU 48 A N PHE 48 A N PHE 49 B O LEU 96 B O LEU 97 B O GLN 89 B O GLN 90 B N SER 14 B N SER 15 B N VAL 13 B N VAL 14 B O TYR 58 B O TYR 59 B O ILE 59 B O ILE 60 B N GLU 47 B N GLU 48 B O ALA 46 B O ALA 47 A N VAL 99 A N VAL 100 A O GLN 89 A O GLN 90 A N SER 14 A N SER 15 1 B CD GLU 53 B CD GLU 54 1 Y 1 B OE1 GLU 53 B OE1 GLU 54 1 Y 1 B OE2 GLU 53 B OE2 GLU 54 1 Y 1 A A O O ASN HOH 86 128 2.19 1 A VAL 33 -120.78 -53.84 20.689 2.630 0.000 0.350 -0.970 0.000 -1.510 0.971 0.958 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. AN EDO MOLECULE FROM THE CRYO SOLUTION IS MODELED. 4. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 0.193 0.159 0.161 1.700 28.892 1172 22774 5.100 99.110 4.644 0.075 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 MAD 0.100 0.098 0.800 0.800 1.200 MAXIMUM LIKELIHOOD WITH PHASES BABINET MODEL WITH MASK 1.700 28.892 188 1815 8 0 1619 0.015 0.022 1692 0.001 0.020 1158 1.415 1.948 2297 0.881 3.000 2836 5.445 5.000 214 36.483 24.286 77 13.235 15.000 308 17.156 15.000 10 0.086 0.200 261 0.006 0.020 1867 0.001 0.020 345 0.215 0.200 290 0.188 0.200 1168 0.187 0.200 851 0.087 0.200 953 0.175 0.200 123 0.261 0.200 23 0.285 0.200 52 0.145 0.200 14 2.427 3.000 1231 0.503 3.000 411 2.832 5.000 1696 5.384 8.000 740 7.614 11.000 594 0.25 0.227 1.744 74 1608 1682 20 99.590 21.1 1.700 28.892 2OD4 22797 0.061 1 6.76 98.30 0.403 1.70 1.76 2.02 7045 1 99.0 0.337 1.76 1.83 2.47 7002 1 98.9 0.257 1.83 1.91 3.07 6894 1 98.4 0.175 1.91 2.02 4.27 7704 1 98.6 0.125 2.02 2.14 5.55 6687 1 99.0 0.091 2.14 2.31 6.89 7288 1 98.5 0.075 2.31 2.54 8.06 6984 1 98.3 0.063 2.54 2.90 9.66 7006 1 97.9 0.05 2.90 3.66 12.10 7195 1 97.5 0.04 3.66 28.9 13.73 7089 1 96.5 model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 phasing Tom Terwilliger terwilliger@LANL.gov http://www.solve.lanl.gov/ SOLVE package refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program 5.2.0019 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html XSCALE package data extraction PDB sw-help@rcsb.rutgers.edu April. 3, 2006 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 2.000 data collection Blu-Ice V. 5.0 data reduction XDS Crystal structure of a dimeric ferredoxin-like protein (jcvi_pep_1096665735785) from uncultured marine organism at 1.70 A resolution 1 N N 1 N N 2 N N 2 N N 3 N N 2 N N 2 N N 4 N N 4 N N SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE. A SER 19 A SER 20 HELX_P A VAL 33 A VAL 34 1 1 15 A VAL 33 A VAL 34 HELX_P A GLY 42 A GLY 43 1 2 10 A ASP 64 A ASP 65 HELX_P A ASN 86 A ASN 87 1 3 23 B SER 19 B SER 20 HELX_P B VAL 33 B VAL 34 1 4 15 B VAL 33 B VAL 34 HELX_P B GLY 42 B GLY 43 1 5 10 B ASP 64 B ASP 65 HELX_P B LYS 74 B LYS 75 1 6 11 B ILE 75 B ILE 76 HELX_P B ASN 86 B ASN 87 1 7 12 covale 1.323 both A GLY 0 A C GLY 1 1_555 A MSE 1 A N MSE 2 1_555 covale 1.326 both A MSE 1 A C MSE 2 1_555 A PHE 2 A N PHE 3 1_555 covale 1.342 both A PRO 7 A C PRO 8 1_555 A MSE 8 A N MSE 9 1_555 covale 1.339 both A MSE 8 A C MSE 9 1_555 A TYR 9 A N TYR 10 1_555 covale 1.327 both A ASP 24 A C ASP 25 1_555 A MSE 25 A N MSE 26 1_555 covale 1.326 both A MSE 25 A C MSE 26 1_555 A THR 26 A N THR 27 1_555 covale 1.324 both A GLY 56 A C GLY 57 1_555 A MSE 57 A N MSE 58 1_555 covale 1.323 both A MSE 57 A C MSE 58 1_555 A TYR 58 A N TYR 59 1_555 covale 1.333 both B GLY 0 B C GLY 1 1_555 B MSE 1 B N MSE 2 1_555 covale 1.324 both B MSE 1 B C MSE 2 1_555 B PHE 2 B N PHE 3 1_555 covale 1.324 both B PRO 7 B C PRO 8 1_555 B MSE 8 B N MSE 9 1_555 covale 1.323 both B MSE 8 B C MSE 9 1_555 B TYR 9 B N TYR 10 1_555 covale 1.338 both B ASP 24 B C ASP 25 1_555 B MSE 25 B N MSE 26 1_555 covale 1.336 both B MSE 25 B C MSE 26 1_555 B THR 26 B N THR 27 1_555 covale 1.330 both B GLY 56 B C GLY 57 1_555 B MSE 57 B N MSE 58 1_555 covale 1.334 both B MSE 57 B C MSE 58 1_555 B TYR 58 B N TYR 59 1_555 UNKNOWN FUNCTION Metagenomics target, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function 2OD4 PDB 1 2OD4 0 100 2OD4 0 100 2OD4 A 1 1 101 0 100 2OD4 0 100 2OD4 B 1 1 101 9 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 9 A TYR 10 A THR 16 A THR 17 A SER 55 A SER 56 A TYR 62 A TYR 63 A SER 45 A SER 46 A ASN 52 A ASN 53 B ARG 87 B ARG 88 B VAL 99 B VAL 100 B TYR 9 B TYR 10 B THR 16 B THR 17 B SER 55 B SER 56 B TYR 62 B TYR 63 B SER 45 B SER 46 B ASN 52 B ASN 53 A ARG 87 A ARG 88 A VAL 99 A VAL 100 A TYR 9 A TYR 10 A THR 16 A THR 17 BINDING SITE FOR RESIDUE CL B 101 B CL 101 Software 4 BINDING SITE FOR RESIDUE CL A 101 A CL 101 Software 3 BINDING SITE FOR RESIDUE CL A 102 A CL 102 Software 3 BINDING SITE FOR RESIDUE CL B 102 B CL 102 Software 2 BINDING SITE FOR RESIDUE EDO A 103 A EDO 103 Software 5 B ARG 11 B ARG 12 4 1_555 B TRP 34 B TRP 35 4 1_555 B ILE 60 B ILE 61 4 1_555 B TYR 62 B TYR 63 4 1_555 A ARG 11 A ARG 12 3 1_555 A TYR 62 A TYR 63 3 1_555 A EDO 103 E EDO 3 1_555 A ARG 83 A ARG 84 3 1_555 A GLN 89 A GLN 90 3 1_555 A ILE 90 A ILE 91 3 1_555 A ARG 95 A ARG 96 2 1_455 B ARG 87 B ARG 88 2 1_555 A ARG 11 A ARG 12 5 1_555 A TRP 34 A TRP 35 5 1_555 A PHE 72 A PHE 73 5 1_555 A ILE 75 A ILE 76 5 1_555 A CL 101 C CL 5 1_555 4 P 1 21 1