0.03136
0.00000
0.00704
0.00000
0.01285
0.00000
0.00000
0.00000
0.02340
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
102.660
90.000
31.890
77.790
43.810
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
C
N
76
N
O
N
77
N
C
N
78
N
O
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
N
N
86
S
C
N
87
N
C
N
88
N
O
N
89
N
C
N
90
N
C
N
91
N
C
N
92
N
O
N
93
N
N
N
94
N
O
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
N
N
106
S
C
N
107
N
C
N
108
N
O
N
109
N
C
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
N
C
N
126
N
C
N
127
N
O
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
N
C
Y
139
N
C
Y
140
N
N
Y
141
N
C
Y
142
N
C
Y
143
N
N
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
O
N
232
N
C
N
233
N
C
N
234
N
SE
N
235
N
C
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
N
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
Y
136
N
sing
Y
137
N
doub
Y
138
N
doub
N
139
N
sing
Y
140
N
sing
N
141
N
sing
Y
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
Y
244
N
doub
Y
245
N
sing
Y
246
N
sing
N
247
N
sing
Y
248
N
doub
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
Y
313
N
doub
Y
314
N
sing
Y
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
sing
Y
322
N
doub
N
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
Y
341
N
doub
Y
342
N
sing
Y
343
N
sing
N
344
N
sing
Y
345
N
doub
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
To be published
0353
Crystal structure of hypothetical protein (JCVI_PEP_1096665735785) from an environmental metagenome (unidentified marine microbe), Sorcerer II Global Ocean Sampling experiment at 1.70 A resolution
10.2210/pdb2od4/pdb
pdb_00002od4
100
1
Flat mirror (vertical focusing)
CCD
2006-11-19
MARMOSAIC 325 mm CCD
Single crystal Si(111) bent monochromator (horizontal focusing)
MAD
M
x-ray
1
0.91837
1.0
0.97966
1.0
BL11-1
SSRL
0.91837, 0.97966
SYNCHROTRON
SSRL BEAMLINE BL11-1
11721.772
hypothetical protein
2
man
polymer
35.453
CHLORIDE ION
4
syn
non-polymer
62.068
1,2-ETHANEDIOL
1
syn
non-polymer
18.015
water
188
nat
water
no
yes
G(MSE)FAGSIP(MSE)YIRVVSITAQSKLQFD(MSE)TVTYFENVWSPKVISLGAISAEFVQSNENSG(MSE)YIIHYP
DKQTAISVFDKIKPEVDEVRTQNRIQITEGKRLFRVD
GMFAGSIPMYIRVVSITAQSKLQFDMTVTYFENVWSPKVISLGAISAEFVQSNENSGMYIIHYPDKQTAISVFDKIKPEV
DEVRTQNRIQITEGKRLFRVD
A,B
367439
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
sample
SYNTHETIC GENE: The gene product was based on JCVI_PEP_1096665735785 from the Sorcerer II Global Ocean Sampling experiment
360281
uncultured marine organism
562
Escherichia coli
Plasmid
1
2.26
45.59
VAPOR DIFFUSION, SITTING DROP, NANODROP
4.5
0.2M Li2SO4, 2.5M NaCl, 0.1M Acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
software
pdbx_struct_assembly_auth_evidence
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_site
repository
Initial release
Version format compliance
Advisory
Version format compliance
Refinement description
Author supporting evidence
Data collection
Database references
Derived calculations
1
0
2007-01-23
1
1
2008-05-01
1
2
2011-07-13
1
3
2017-10-18
1
4
2017-10-25
1
5
2023-12-27
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BIOMOLECULE: 1,2
THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT
WHICH CONSISTS OF 2 CHAINS. SEE REMARK 350 FOR
INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S).
SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING
SUPPORTS THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY
SIGNIFICANT OLIGOMERIZATION STATE.
SEQUENCE
(1) THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION
TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV
PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE
TARGET SEQUENCE.
(2) THE SEQUENCE OF THE PROTEIN WAS NOT AVAILABLE IN THE
UNP DATABASE AT THE TIME OF PROCESSING.
(3) PRODUCT OF THE EXPRESSED SYNTHETIC GENE WAS BASED ON
THE PREDICTED SEQUENCE OF ACCESSION ID
JCVI_PEP_1096665735785 FROM THE J. CRAIG VENTER INSTITUTE.
Y
RCSB
Y
RCSB
2006-12-21
REL
REL
CL
CHLORIDE ION
EDO
1,2-ETHANEDIOL
HOH
water
CL
3
2
CL
CL
101
A
CL
4
2
CL
CL
102
A
EDO
1
3
EDO
EDO
103
A
CL
2
2
CL
CL
101
B
CL
5
2
CL
CL
102
B
HOH
6
4
HOH
HOH
104
A
HOH
7
4
HOH
HOH
105
A
HOH
15
4
HOH
HOH
106
A
HOH
16
4
HOH
HOH
107
A
HOH
17
4
HOH
HOH
108
A
HOH
19
4
HOH
HOH
109
A
HOH
20
4
HOH
HOH
110
A
HOH
22
4
HOH
HOH
111
A
HOH
23
4
HOH
HOH
112
A
HOH
24
4
HOH
HOH
113
A
HOH
25
4
HOH
HOH
114
A
HOH
27
4
HOH
HOH
115
A
HOH
29
4
HOH
HOH
116
A
HOH
31
4
HOH
HOH
117
A
HOH
33
4
HOH
HOH
118
A
HOH
36
4
HOH
HOH
119
A
HOH
37
4
HOH
HOH
120
A
HOH
38
4
HOH
HOH
121
A
HOH
39
4
HOH
HOH
122
A
HOH
40
4
HOH
HOH
123
A
HOH
45
4
HOH
HOH
124
A
HOH
49
4
HOH
HOH
125
A
HOH
52
4
HOH
HOH
126
A
HOH
54
4
HOH
HOH
127
A
HOH
55
4
HOH
HOH
128
A
HOH
57
4
HOH
HOH
129
A
HOH
59
4
HOH
HOH
130
A
HOH
60
4
HOH
HOH
131
A
HOH
61
4
HOH
HOH
132
A
HOH
63
4
HOH
HOH
133
A
HOH
64
4
HOH
HOH
134
A
HOH
69
4
HOH
HOH
135
A
HOH
70
4
HOH
HOH
136
A
HOH
76
4
HOH
HOH
137
A
HOH
78
4
HOH
HOH
138
A
HOH
79
4
HOH
HOH
139
A
HOH
82
4
HOH
HOH
140
A
HOH
83
4
HOH
HOH
141
A
HOH
84
4
HOH
HOH
142
A
HOH
88
4
HOH
HOH
143
A
HOH
90
4
HOH
HOH
144
A
HOH
93
4
HOH
HOH
145
A
HOH
96
4
HOH
HOH
146
A
HOH
98
4
HOH
HOH
147
A
HOH
101
4
HOH
HOH
148
A
HOH
104
4
HOH
HOH
149
A
HOH
106
4
HOH
HOH
150
A
HOH
107
4
HOH
HOH
151
A
HOH
113
4
HOH
HOH
152
A
HOH
116
4
HOH
HOH
153
A
HOH
117
4
HOH
HOH
154
A
HOH
119
4
HOH
HOH
155
A
HOH
121
4
HOH
HOH
156
A
HOH
122
4
HOH
HOH
157
A
HOH
124
4
HOH
HOH
158
A
HOH
125
4
HOH
HOH
159
A
HOH
127
4
HOH
HOH
160
A
HOH
131
4
HOH
HOH
161
A
HOH
132
4
HOH
HOH
162
A
HOH
133
4
HOH
HOH
163
A
HOH
138
4
HOH
HOH
164
A
HOH
139
4
HOH
HOH
165
A
HOH
142
4
HOH
HOH
166
A
HOH
145
4
HOH
HOH
167
A
HOH
147
4
HOH
HOH
168
A
HOH
148
4
HOH
HOH
169
A
HOH
159
4
HOH
HOH
170
A
HOH
160
4
HOH
HOH
171
A
HOH
161
4
HOH
HOH
172
A
HOH
162
4
HOH
HOH
173
A
HOH
164
4
HOH
HOH
174
A
HOH
165
4
HOH
HOH
175
A
HOH
167
4
HOH
HOH
176
A
HOH
169
4
HOH
HOH
177
A
HOH
171
4
HOH
HOH
178
A
HOH
172
4
HOH
HOH
179
A
HOH
174
4
HOH
HOH
180
A
HOH
175
4
HOH
HOH
181
A
HOH
178
4
HOH
HOH
182
A
HOH
183
4
HOH
HOH
183
A
HOH
186
4
HOH
HOH
184
A
HOH
188
4
HOH
HOH
185
A
HOH
190
4
HOH
HOH
186
A
HOH
191
4
HOH
HOH
187
A
HOH
8
4
HOH
HOH
103
B
HOH
9
4
HOH
HOH
104
B
HOH
10
4
HOH
HOH
105
B
HOH
11
4
HOH
HOH
106
B
HOH
12
4
HOH
HOH
107
B
HOH
13
4
HOH
HOH
108
B
HOH
14
4
HOH
HOH
109
B
HOH
18
4
HOH
HOH
110
B
HOH
21
4
HOH
HOH
111
B
HOH
26
4
HOH
HOH
112
B
HOH
28
4
HOH
HOH
113
B
HOH
30
4
HOH
HOH
114
B
HOH
32
4
HOH
HOH
115
B
HOH
34
4
HOH
HOH
116
B
HOH
35
4
HOH
HOH
117
B
HOH
41
4
HOH
HOH
118
B
HOH
42
4
HOH
HOH
119
B
HOH
43
4
HOH
HOH
120
B
HOH
44
4
HOH
HOH
121
B
HOH
46
4
HOH
HOH
122
B
HOH
47
4
HOH
HOH
123
B
HOH
48
4
HOH
HOH
124
B
HOH
50
4
HOH
HOH
125
B
HOH
51
4
HOH
HOH
126
B
HOH
53
4
HOH
HOH
127
B
HOH
56
4
HOH
HOH
128
B
HOH
58
4
HOH
HOH
129
B
HOH
62
4
HOH
HOH
130
B
HOH
65
4
HOH
HOH
131
B
HOH
66
4
HOH
HOH
132
B
HOH
67
4
HOH
HOH
133
B
HOH
68
4
HOH
HOH
134
B
HOH
71
4
HOH
HOH
135
B
HOH
72
4
HOH
HOH
136
B
HOH
73
4
HOH
HOH
137
B
HOH
74
4
HOH
HOH
138
B
HOH
75
4
HOH
HOH
139
B
HOH
77
4
HOH
HOH
140
B
HOH
80
4
HOH
HOH
141
B
HOH
81
4
HOH
HOH
142
B
HOH
85
4
HOH
HOH
143
B
HOH
86
4
HOH
HOH
144
B
HOH
87
4
HOH
HOH
145
B
HOH
89
4
HOH
HOH
146
B
HOH
91
4
HOH
HOH
147
B
HOH
92
4
HOH
HOH
148
B
HOH
94
4
HOH
HOH
149
B
HOH
95
4
HOH
HOH
150
B
HOH
97
4
HOH
HOH
151
B
HOH
99
4
HOH
HOH
152
B
HOH
100
4
HOH
HOH
153
B
HOH
102
4
HOH
HOH
154
B
HOH
103
4
HOH
HOH
155
B
HOH
105
4
HOH
HOH
156
B
HOH
108
4
HOH
HOH
157
B
HOH
109
4
HOH
HOH
158
B
HOH
110
4
HOH
HOH
159
B
HOH
111
4
HOH
HOH
160
B
HOH
112
4
HOH
HOH
161
B
HOH
114
4
HOH
HOH
162
B
HOH
115
4
HOH
HOH
163
B
HOH
118
4
HOH
HOH
164
B
HOH
120
4
HOH
HOH
165
B
HOH
123
4
HOH
HOH
166
B
HOH
126
4
HOH
HOH
167
B
HOH
128
4
HOH
HOH
168
B
HOH
129
4
HOH
HOH
169
B
HOH
130
4
HOH
HOH
170
B
HOH
134
4
HOH
HOH
171
B
HOH
135
4
HOH
HOH
172
B
HOH
136
4
HOH
HOH
173
B
HOH
137
4
HOH
HOH
174
B
HOH
140
4
HOH
HOH
175
B
HOH
141
4
HOH
HOH
176
B
HOH
143
4
HOH
HOH
177
B
HOH
144
4
HOH
HOH
178
B
HOH
146
4
HOH
HOH
179
B
HOH
149
4
HOH
HOH
180
B
HOH
150
4
HOH
HOH
181
B
HOH
151
4
HOH
HOH
182
B
HOH
152
4
HOH
HOH
183
B
HOH
153
4
HOH
HOH
184
B
HOH
154
4
HOH
HOH
185
B
HOH
155
4
HOH
HOH
186
B
HOH
156
4
HOH
HOH
187
B
HOH
157
4
HOH
HOH
188
B
HOH
158
4
HOH
HOH
189
B
HOH
163
4
HOH
HOH
190
B
HOH
166
4
HOH
HOH
191
B
HOH
168
4
HOH
HOH
192
B
HOH
170
4
HOH
HOH
193
B
HOH
173
4
HOH
HOH
194
B
HOH
176
4
HOH
HOH
195
B
HOH
177
4
HOH
HOH
196
B
HOH
179
4
HOH
HOH
197
B
HOH
180
4
HOH
HOH
198
B
HOH
181
4
HOH
HOH
199
B
HOH
182
4
HOH
HOH
200
B
HOH
184
4
HOH
HOH
201
B
HOH
185
4
HOH
HOH
202
B
HOH
187
4
HOH
HOH
203
B
HOH
189
4
HOH
HOH
204
B
HOH
192
4
HOH
HOH
205
B
HOH
193
4
HOH
HOH
206
B
GLY
0
n
1
GLY
0
A
MSE
1
n
2
MSE
1
A
PHE
2
n
3
PHE
2
A
ALA
3
n
4
ALA
3
A
GLY
4
n
5
GLY
4
A
SER
5
n
6
SER
5
A
ILE
6
n
7
ILE
6
A
PRO
7
n
8
PRO
7
A
MSE
8
n
9
MSE
8
A
TYR
9
n
10
TYR
9
A
ILE
10
n
11
ILE
10
A
ARG
11
n
12
ARG
11
A
VAL
12
n
13
VAL
12
A
VAL
13
n
14
VAL
13
A
SER
14
n
15
SER
14
A
ILE
15
n
16
ILE
15
A
THR
16
n
17
THR
16
A
ALA
17
n
18
ALA
17
A
GLN
18
n
19
GLN
18
A
SER
19
n
20
SER
19
A
LYS
20
n
21
LYS
20
A
LEU
21
n
22
LEU
21
A
GLN
22
n
23
GLN
22
A
PHE
23
n
24
PHE
23
A
ASP
24
n
25
ASP
24
A
MSE
25
n
26
MSE
25
A
THR
26
n
27
THR
26
A
VAL
27
n
28
VAL
27
A
THR
28
n
29
THR
28
A
TYR
29
n
30
TYR
29
A
PHE
30
n
31
PHE
30
A
GLU
31
n
32
GLU
31
A
ASN
32
n
33
ASN
32
A
VAL
33
n
34
VAL
33
A
TRP
34
n
35
TRP
34
A
SER
35
n
36
SER
35
A
PRO
36
n
37
PRO
36
A
LYS
37
n
38
LYS
37
A
VAL
38
n
39
VAL
38
A
ILE
39
n
40
ILE
39
A
SER
40
n
41
SER
40
A
LEU
41
n
42
LEU
41
A
GLY
42
n
43
GLY
42
A
ALA
43
n
44
ALA
43
A
ILE
44
n
45
ILE
44
A
SER
45
n
46
SER
45
A
ALA
46
n
47
ALA
46
A
GLU
47
n
48
GLU
47
A
PHE
48
n
49
PHE
48
A
VAL
49
n
50
VAL
49
A
GLN
50
n
51
GLN
50
A
SER
51
n
52
SER
51
A
ASN
52
n
53
ASN
52
A
GLU
53
n
54
GLU
53
A
ASN
54
n
55
ASN
54
A
SER
55
n
56
SER
55
A
GLY
56
n
57
GLY
56
A
MSE
57
n
58
MSE
57
A
TYR
58
n
59
TYR
58
A
ILE
59
n
60
ILE
59
A
ILE
60
n
61
ILE
60
A
HIS
61
n
62
HIS
61
A
TYR
62
n
63
TYR
62
A
PRO
63
n
64
PRO
63
A
ASP
64
n
65
ASP
64
A
LYS
65
n
66
LYS
65
A
GLN
66
n
67
GLN
66
A
THR
67
n
68
THR
67
A
ALA
68
n
69
ALA
68
A
ILE
69
n
70
ILE
69
A
SER
70
n
71
SER
70
A
VAL
71
n
72
VAL
71
A
PHE
72
n
73
PHE
72
A
ASP
73
n
74
ASP
73
A
LYS
74
n
75
LYS
74
A
ILE
75
n
76
ILE
75
A
LYS
76
n
77
LYS
76
A
PRO
77
n
78
PRO
77
A
GLU
78
n
79
GLU
78
A
VAL
79
n
80
VAL
79
A
ASP
80
n
81
ASP
80
A
GLU
81
n
82
GLU
81
A
VAL
82
n
83
VAL
82
A
ARG
83
n
84
ARG
83
A
THR
84
n
85
THR
84
A
GLN
85
n
86
GLN
85
A
ASN
86
n
87
ASN
86
A
ARG
87
n
88
ARG
87
A
ILE
88
n
89
ILE
88
A
GLN
89
n
90
GLN
89
A
ILE
90
n
91
ILE
90
A
THR
91
n
92
THR
91
A
GLU
92
n
93
GLU
92
A
GLY
93
n
94
GLY
93
A
LYS
94
n
95
LYS
94
A
ARG
95
n
96
ARG
95
A
LEU
96
n
97
LEU
96
A
PHE
97
n
98
PHE
97
A
ARG
98
n
99
ARG
98
A
VAL
99
n
100
VAL
99
A
ASP
100
n
101
ASP
100
A
GLY
0
n
1
GLY
0
B
MSE
1
n
2
MSE
1
B
PHE
2
n
3
PHE
2
B
ALA
3
n
4
ALA
3
B
GLY
4
n
5
GLY
4
B
SER
5
n
6
SER
5
B
ILE
6
n
7
ILE
6
B
PRO
7
n
8
PRO
7
B
MSE
8
n
9
MSE
8
B
TYR
9
n
10
TYR
9
B
ILE
10
n
11
ILE
10
B
ARG
11
n
12
ARG
11
B
VAL
12
n
13
VAL
12
B
VAL
13
n
14
VAL
13
B
SER
14
n
15
SER
14
B
ILE
15
n
16
ILE
15
B
THR
16
n
17
THR
16
B
ALA
17
n
18
ALA
17
B
GLN
18
n
19
GLN
18
B
SER
19
n
20
SER
19
B
LYS
20
n
21
LYS
20
B
LEU
21
n
22
LEU
21
B
GLN
22
n
23
GLN
22
B
PHE
23
n
24
PHE
23
B
ASP
24
n
25
ASP
24
B
MSE
25
n
26
MSE
25
B
THR
26
n
27
THR
26
B
VAL
27
n
28
VAL
27
B
THR
28
n
29
THR
28
B
TYR
29
n
30
TYR
29
B
PHE
30
n
31
PHE
30
B
GLU
31
n
32
GLU
31
B
ASN
32
n
33
ASN
32
B
VAL
33
n
34
VAL
33
B
TRP
34
n
35
TRP
34
B
SER
35
n
36
SER
35
B
PRO
36
n
37
PRO
36
B
LYS
37
n
38
LYS
37
B
VAL
38
n
39
VAL
38
B
ILE
39
n
40
ILE
39
B
SER
40
n
41
SER
40
B
LEU
41
n
42
LEU
41
B
GLY
42
n
43
GLY
42
B
ALA
43
n
44
ALA
43
B
ILE
44
n
45
ILE
44
B
SER
45
n
46
SER
45
B
ALA
46
n
47
ALA
46
B
GLU
47
n
48
GLU
47
B
PHE
48
n
49
PHE
48
B
VAL
49
n
50
VAL
49
B
GLN
50
n
51
GLN
50
B
SER
51
n
52
SER
51
B
ASN
52
n
53
ASN
52
B
GLU
53
n
54
GLU
53
B
ASN
54
n
55
ASN
54
B
SER
55
n
56
SER
55
B
GLY
56
n
57
GLY
56
B
MSE
57
n
58
MSE
57
B
TYR
58
n
59
TYR
58
B
ILE
59
n
60
ILE
59
B
ILE
60
n
61
ILE
60
B
HIS
61
n
62
HIS
61
B
TYR
62
n
63
TYR
62
B
PRO
63
n
64
PRO
63
B
ASP
64
n
65
ASP
64
B
LYS
65
n
66
LYS
65
B
GLN
66
n
67
GLN
66
B
THR
67
n
68
THR
67
B
ALA
68
n
69
ALA
68
B
ILE
69
n
70
ILE
69
B
SER
70
n
71
SER
70
B
VAL
71
n
72
VAL
71
B
PHE
72
n
73
PHE
72
B
ASP
73
n
74
ASP
73
B
LYS
74
n
75
LYS
74
B
ILE
75
n
76
ILE
75
B
LYS
76
n
77
LYS
76
B
PRO
77
n
78
PRO
77
B
GLU
78
n
79
GLU
78
B
VAL
79
n
80
VAL
79
B
ASP
80
n
81
ASP
80
B
GLU
81
n
82
GLU
81
B
VAL
82
n
83
VAL
82
B
ARG
83
n
84
ARG
83
B
THR
84
n
85
THR
84
B
GLN
85
n
86
GLN
85
B
ASN
86
n
87
ASN
86
B
ARG
87
n
88
ARG
87
B
ILE
88
n
89
ILE
88
B
GLN
89
n
90
GLN
89
B
ILE
90
n
91
ILE
90
B
THR
91
n
92
THR
91
B
GLU
92
n
93
GLU
92
B
GLY
93
n
94
GLY
93
B
LYS
94
n
95
LYS
94
B
ARG
95
n
96
ARG
95
B
LEU
96
n
97
LEU
96
B
PHE
97
n
98
PHE
97
B
ARG
98
n
99
ARG
98
B
VAL
99
n
100
VAL
99
B
ASP
100
n
101
ASP
100
B
0.3985
0.4561
0.0990
0.5512
0.3953
2.7460
-0.0268
0.0179
-0.0179
-0.0763
0.0084
-0.0474
-0.1476
-0.0776
0.0184
-0.1134
0.0212
-0.0262
-0.0025
-0.0051
0.0122
refined
4.0350
36.6640
29.8930
X-RAY DIFFRACTION
0.3023
-0.0235
-0.2899
0.7154
0.0084
1.2012
-0.0044
-0.0186
-0.0115
0.0140
-0.0012
-0.0187
0.1186
-0.0974
0.0056
-0.0861
0.0104
-0.0187
-0.0072
-0.0034
0.0187
refined
-0.9800
25.3830
43.7510
X-RAY DIFFRACTION
A
0
A
1
A
100
A
101
X-RAY DIFFRACTION
1
ALL
B
0
B
1
B
100
B
101
X-RAY DIFFRACTION
2
ALL
author_and_software_defined_assembly
PISA
2
dimeric
gel filtration
light scattering
3350
-58
10670
A
MSE
1
SELENOMETHIONINE
A
MSE
2
MET
A
MSE
8
SELENOMETHIONINE
A
MSE
9
MET
A
MSE
25
SELENOMETHIONINE
A
MSE
26
MET
A
MSE
57
SELENOMETHIONINE
A
MSE
58
MET
B
MSE
1
SELENOMETHIONINE
B
MSE
2
MET
B
MSE
8
SELENOMETHIONINE
B
MSE
9
MET
B
MSE
25
SELENOMETHIONINE
B
MSE
26
MET
B
MSE
57
SELENOMETHIONINE
B
MSE
58
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
11
A
N
ARG
12
A
O
ILE
60
A
O
ILE
61
A
O
ILE
59
A
O
ILE
60
A
N
GLU
47
A
N
GLU
48
A
N
PHE
48
A
N
PHE
49
B
O
LEU
96
B
O
LEU
97
B
O
GLN
89
B
O
GLN
90
B
N
SER
14
B
N
SER
15
B
N
VAL
13
B
N
VAL
14
B
O
TYR
58
B
O
TYR
59
B
O
ILE
59
B
O
ILE
60
B
N
GLU
47
B
N
GLU
48
B
O
ALA
46
B
O
ALA
47
A
N
VAL
99
A
N
VAL
100
A
O
GLN
89
A
O
GLN
90
A
N
SER
14
A
N
SER
15
1
B
CD
GLU
53
B
CD
GLU
54
1
Y
1
B
OE1
GLU
53
B
OE1
GLU
54
1
Y
1
B
OE2
GLU
53
B
OE2
GLU
54
1
Y
1
A
A
O
O
ASN
HOH
86
128
2.19
1
A
VAL
33
-120.78
-53.84
20.689
2.630
0.000
0.350
-0.970
0.000
-1.510
0.971
0.958
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE
INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY
OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75
FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION.
3. AN EDO MOLECULE FROM THE CRYO SOLUTION IS MODELED.
4. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY.
0.193
0.159
0.161
1.700
28.892
1172
22774
5.100
99.110
4.644
0.075
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
MAD
0.100
0.098
0.800
0.800
1.200
MAXIMUM LIKELIHOOD WITH PHASES
BABINET MODEL WITH MASK
1.700
28.892
188
1815
8
0
1619
0.015
0.022
1692
0.001
0.020
1158
1.415
1.948
2297
0.881
3.000
2836
5.445
5.000
214
36.483
24.286
77
13.235
15.000
308
17.156
15.000
10
0.086
0.200
261
0.006
0.020
1867
0.001
0.020
345
0.215
0.200
290
0.188
0.200
1168
0.187
0.200
851
0.087
0.200
953
0.175
0.200
123
0.261
0.200
23
0.285
0.200
52
0.145
0.200
14
2.427
3.000
1231
0.503
3.000
411
2.832
5.000
1696
5.384
8.000
740
7.614
11.000
594
0.25
0.227
1.744
74
1608
1682
20
99.590
21.1
1.700
28.892
2OD4
22797
0.061
1
6.76
98.30
0.403
1.70
1.76
2.02
7045
1
99.0
0.337
1.76
1.83
2.47
7002
1
98.9
0.257
1.83
1.91
3.07
6894
1
98.4
0.175
1.91
2.02
4.27
7704
1
98.6
0.125
2.02
2.14
5.55
6687
1
99.0
0.091
2.14
2.31
6.89
7288
1
98.5
0.075
2.31
2.54
8.06
6984
1
98.3
0.063
2.54
2.90
9.66
7006
1
97.9
0.05
2.90
3.66
12.10
7195
1
97.5
0.04
3.66
28.9
13.73
7089
1
96.5
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
phasing
Tom Terwilliger
terwilliger@LANL.gov
http://www.solve.lanl.gov/
SOLVE
package
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
5.2.0019
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html
XSCALE
package
data extraction
PDB
sw-help@rcsb.rutgers.edu
April. 3, 2006
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
2.000
data collection
Blu-Ice
V. 5.0
data reduction
XDS
Crystal structure of a dimeric ferredoxin-like protein (jcvi_pep_1096665735785) from uncultured marine organism at 1.70 A resolution
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
2
N
N
2
N
N
4
N
N
4
N
N
SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING
SUPPORTS THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY
SIGNIFICANT OLIGOMERIZATION STATE.
A
SER
19
A
SER
20
HELX_P
A
VAL
33
A
VAL
34
1
1
15
A
VAL
33
A
VAL
34
HELX_P
A
GLY
42
A
GLY
43
1
2
10
A
ASP
64
A
ASP
65
HELX_P
A
ASN
86
A
ASN
87
1
3
23
B
SER
19
B
SER
20
HELX_P
B
VAL
33
B
VAL
34
1
4
15
B
VAL
33
B
VAL
34
HELX_P
B
GLY
42
B
GLY
43
1
5
10
B
ASP
64
B
ASP
65
HELX_P
B
LYS
74
B
LYS
75
1
6
11
B
ILE
75
B
ILE
76
HELX_P
B
ASN
86
B
ASN
87
1
7
12
covale
1.323
both
A
GLY
0
A
C
GLY
1
1_555
A
MSE
1
A
N
MSE
2
1_555
covale
1.326
both
A
MSE
1
A
C
MSE
2
1_555
A
PHE
2
A
N
PHE
3
1_555
covale
1.342
both
A
PRO
7
A
C
PRO
8
1_555
A
MSE
8
A
N
MSE
9
1_555
covale
1.339
both
A
MSE
8
A
C
MSE
9
1_555
A
TYR
9
A
N
TYR
10
1_555
covale
1.327
both
A
ASP
24
A
C
ASP
25
1_555
A
MSE
25
A
N
MSE
26
1_555
covale
1.326
both
A
MSE
25
A
C
MSE
26
1_555
A
THR
26
A
N
THR
27
1_555
covale
1.324
both
A
GLY
56
A
C
GLY
57
1_555
A
MSE
57
A
N
MSE
58
1_555
covale
1.323
both
A
MSE
57
A
C
MSE
58
1_555
A
TYR
58
A
N
TYR
59
1_555
covale
1.333
both
B
GLY
0
B
C
GLY
1
1_555
B
MSE
1
B
N
MSE
2
1_555
covale
1.324
both
B
MSE
1
B
C
MSE
2
1_555
B
PHE
2
B
N
PHE
3
1_555
covale
1.324
both
B
PRO
7
B
C
PRO
8
1_555
B
MSE
8
B
N
MSE
9
1_555
covale
1.323
both
B
MSE
8
B
C
MSE
9
1_555
B
TYR
9
B
N
TYR
10
1_555
covale
1.338
both
B
ASP
24
B
C
ASP
25
1_555
B
MSE
25
B
N
MSE
26
1_555
covale
1.336
both
B
MSE
25
B
C
MSE
26
1_555
B
THR
26
B
N
THR
27
1_555
covale
1.330
both
B
GLY
56
B
C
GLY
57
1_555
B
MSE
57
B
N
MSE
58
1_555
covale
1.334
both
B
MSE
57
B
C
MSE
58
1_555
B
TYR
58
B
N
TYR
59
1_555
UNKNOWN FUNCTION
Metagenomics target, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function
2OD4
PDB
1
2OD4
0
100
2OD4
0
100
2OD4
A
1
1
101
0
100
2OD4
0
100
2OD4
B
1
1
101
9
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
9
A
TYR
10
A
THR
16
A
THR
17
A
SER
55
A
SER
56
A
TYR
62
A
TYR
63
A
SER
45
A
SER
46
A
ASN
52
A
ASN
53
B
ARG
87
B
ARG
88
B
VAL
99
B
VAL
100
B
TYR
9
B
TYR
10
B
THR
16
B
THR
17
B
SER
55
B
SER
56
B
TYR
62
B
TYR
63
B
SER
45
B
SER
46
B
ASN
52
B
ASN
53
A
ARG
87
A
ARG
88
A
VAL
99
A
VAL
100
A
TYR
9
A
TYR
10
A
THR
16
A
THR
17
BINDING SITE FOR RESIDUE CL B 101
B
CL
101
Software
4
BINDING SITE FOR RESIDUE CL A 101
A
CL
101
Software
3
BINDING SITE FOR RESIDUE CL A 102
A
CL
102
Software
3
BINDING SITE FOR RESIDUE CL B 102
B
CL
102
Software
2
BINDING SITE FOR RESIDUE EDO A 103
A
EDO
103
Software
5
B
ARG
11
B
ARG
12
4
1_555
B
TRP
34
B
TRP
35
4
1_555
B
ILE
60
B
ILE
61
4
1_555
B
TYR
62
B
TYR
63
4
1_555
A
ARG
11
A
ARG
12
3
1_555
A
TYR
62
A
TYR
63
3
1_555
A
EDO
103
E
EDO
3
1_555
A
ARG
83
A
ARG
84
3
1_555
A
GLN
89
A
GLN
90
3
1_555
A
ILE
90
A
ILE
91
3
1_555
A
ARG
95
A
ARG
96
2
1_455
B
ARG
87
B
ARG
88
2
1_555
A
ARG
11
A
ARG
12
5
1_555
A
TRP
34
A
TRP
35
5
1_555
A
PHE
72
A
PHE
73
5
1_555
A
ILE
75
A
ILE
76
5
1_555
A
CL
101
C
CL
5
1_555
4
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