0.007180 0.000000 0.000000 0.000000 0.007180 0.000000 0.000000 0.000000 0.007180 0.00000 0.00000 0.00000 Chapados, B.R. Tainer, J.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 90.00 139.280 139.280 139.280 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C N 350 N C N 351 N C N 352 N O N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub N 322 N sing Y 323 N doub N 324 N sing Y 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 35 1624 1637 10.1093/nar/gkm006 17308348 The C-terminal domain of yeast PCNA is required for physical and functional interactions with Cdc9 DNA ligase. 2007 10.2210/pdb2od8/pdb pdb_00002od8 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 Vertical focusing mirror CCD 2002-06-02 ADSC QUANTUM 4 single crystal Si(311) bent (horizontal focusing) SINGLE WAVELENGTH M x-ray 1 0.97900 1.0 BL9-1 SSRL 0.97900 SYNCHROTRON SSRL BEAMLINE BL9-1 28944.051 Proliferating cell nuclear antigen 1 man polymer 2456.945 DNA ligase I, mitochondrial precursor 6.5.1.1 Residues 32-53 1 syn polymer 18.015 water 18 nat water PCNA CDC9, Polydeoxyribonucleotide synthase no no MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILR CGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINI MITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFD LKSGFLQFFLAPKFNDEE MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILR CGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINI MITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFD LKSGFLQFFLAPKFNDEE A polypeptide(L) no no AGKKPKQATLARFFTSMKNKPT AGKKPKQATLARFFTSMKNKPT B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces Escherichia Escherichia coli sample POL30 4932 Saccharomyces cerevisiae 469008 Escherichia coli BL21(DE3) BL21(DE3) PLASMID pT7-PCNA 1 3.58 65.68 VAPOR DIFFUSION, HANGING DROP 5.6 1.6 M (NH4)2SO4, Sodium citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 294K 294 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Version format compliance Advisory Version format compliance Refinement description Data collection Database references Refinement description 1 0 2007-05-01 1 1 2008-05-01 1 2 2011-07-13 1 3 2017-10-18 1 4 2023-08-30 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession SEQUENCE CHAIN B IS THE PEPTIDE SYNTHESIZED BASED ON SEQUENCE OF RESIDUES 32-53 OF CDC9 (UNP P04819) SHOWN IN DBREF. RCSB Y RCSB 2006-12-21 REL REL HOH water Peptide synthesized based on Cdc9 sequence (UNP P04819), residues 32-53. sample 1PLQ PDB entry 1PLQ PDB experimental model HOH 1 3 HOH HOH 259 A HOH 3 3 HOH HOH 260 A HOH 4 3 HOH HOH 261 A HOH 5 3 HOH HOH 262 A HOH 6 3 HOH HOH 263 A HOH 7 3 HOH HOH 264 A HOH 8 3 HOH HOH 265 A HOH 9 3 HOH HOH 266 A HOH 10 3 HOH HOH 267 A HOH 11 3 HOH HOH 268 A HOH 13 3 HOH HOH 269 A HOH 14 3 HOH HOH 270 A HOH 15 3 HOH HOH 271 A HOH 16 3 HOH HOH 272 A HOH 17 3 HOH HOH 273 A HOH 18 3 HOH HOH 274 A HOH 2 3 HOH HOH 2 B HOH 12 3 HOH HOH 12 B MET 1 n 1 MET 1 A LEU 2 n 2 LEU 2 A GLU 3 n 3 GLU 3 A ALA 4 n 4 ALA 4 A LYS 5 n 5 LYS 5 A PHE 6 n 6 PHE 6 A GLU 7 n 7 GLU 7 A GLU 8 n 8 GLU 8 A ALA 9 n 9 ALA 9 A SER 10 n 10 SER 10 A LEU 11 n 11 LEU 11 A PHE 12 n 12 PHE 12 A LYS 13 n 13 LYS 13 A ARG 14 n 14 ARG 14 A ILE 15 n 15 ILE 15 A ILE 16 n 16 ILE 16 A ASP 17 n 17 ASP 17 A GLY 18 n 18 GLY 18 A PHE 19 n 19 PHE 19 A LYS 20 n 20 LYS 20 A ASP 21 n 21 ASP 21 A CYS 22 n 22 CYS 22 A VAL 23 n 23 VAL 23 A GLN 24 n 24 GLN 24 A LEU 25 n 25 LEU 25 A VAL 26 n 26 VAL 26 A ASN 27 n 27 ASN 27 A PHE 28 n 28 PHE 28 A GLN 29 n 29 GLN 29 A CYS 30 n 30 CYS 30 A LYS 31 n 31 LYS 31 A GLU 32 n 32 GLU 32 A ASP 33 n 33 ASP 33 A GLY 34 n 34 GLY 34 A ILE 35 n 35 ILE 35 A ILE 36 n 36 ILE 36 A ALA 37 n 37 ALA 37 A GLN 38 n 38 GLN 38 A ALA 39 n 39 ALA 39 A VAL 40 n 40 VAL 40 A ASP 41 n 41 ASP 41 A ASP 42 n 42 ASP 42 A SER 43 n 43 SER 43 A ARG 44 n 44 ARG 44 A VAL 45 n 45 VAL 45 A LEU 46 n 46 LEU 46 A LEU 47 n 47 LEU 47 A VAL 48 n 48 VAL 48 A SER 49 n 49 SER 49 A LEU 50 n 50 LEU 50 A GLU 51 n 51 GLU 51 A ILE 52 n 52 ILE 52 A GLY 53 n 53 GLY 53 A VAL 54 n 54 VAL 54 A GLU 55 n 55 GLU 55 A ALA 56 n 56 ALA 56 A PHE 57 n 57 PHE 57 A GLN 58 n 58 GLN 58 A GLU 59 n 59 GLU 59 A TYR 60 n 60 TYR 60 A ARG 61 n 61 ARG 61 A CYS 62 n 62 CYS 62 A ASP 63 n 63 ASP 63 A HIS 64 n 64 HIS 64 A PRO 65 n 65 PRO 65 A VAL 66 n 66 VAL 66 A THR 67 n 67 THR 67 A LEU 68 n 68 LEU 68 A GLY 69 n 69 GLY 69 A MET 70 n 70 MET 70 A ASP 71 n 71 ASP 71 A LEU 72 n 72 LEU 72 A THR 73 n 73 THR 73 A SER 74 n 74 SER 74 A LEU 75 n 75 LEU 75 A SER 76 n 76 SER 76 A LYS 77 n 77 LYS 77 A ILE 78 n 78 ILE 78 A LEU 79 n 79 LEU 79 A ARG 80 n 80 ARG 80 A CYS 81 n 81 CYS 81 A GLY 82 n 82 GLY 82 A ASN 83 n 83 ASN 83 A ASN 84 n 84 ASN 84 A THR 85 n 85 THR 85 A ASP 86 n 86 ASP 86 A THR 87 n 87 THR 87 A LEU 88 n 88 LEU 88 A THR 89 n 89 THR 89 A LEU 90 n 90 LEU 90 A ILE 91 n 91 ILE 91 A ALA 92 n 92 ALA 92 A ASP 93 n 93 ASP 93 A ASN 94 n 94 ASN 94 A THR 95 n 95 THR 95 A PRO 96 n 96 PRO 96 A ASP 97 n 97 ASP 97 A SER 98 n 98 SER 98 A ILE 99 n 99 ILE 99 A ILE 100 n 100 ILE 100 A LEU 101 n 101 LEU 101 A LEU 102 n 102 LEU 102 A PHE 103 n 103 PHE 103 A GLU 104 n 104 GLU 104 A ASP 105 n 105 ASP 105 A THR 106 n 106 THR 106 A LYS 107 n 107 LYS 107 A LYS 108 n 108 LYS 108 A ASP 109 n 109 ASP 109 A ARG 110 n 110 ARG 110 A ILE 111 n 111 ILE 111 A ALA 112 n 112 ALA 112 A GLU 113 n 113 GLU 113 A TYR 114 n 114 TYR 114 A SER 115 n 115 SER 115 A LEU 116 n 116 LEU 116 A LYS 117 n 117 LYS 117 A LEU 118 n 118 LEU 118 A MET 119 n 119 MET 119 A ASP 120 n 120 ASP 120 A ILE 121 n 121 ILE 121 A ASP 122 n 122 ASP 122 A ALA 123 n 123 ALA 123 A ASP 124 n 124 ASP 124 A PHE 125 n 125 PHE 125 A LEU 126 n 126 LEU 126 A LYS 127 n 127 LYS 127 A ILE 128 n 128 ILE 128 A GLU 129 n 129 GLU 129 A GLU 130 n 130 GLU 130 A LEU 131 n 131 LEU 131 A GLN 132 n 132 GLN 132 A TYR 133 n 133 TYR 133 A ASP 134 n 134 ASP 134 A SER 135 n 135 SER 135 A THR 136 n 136 THR 136 A LEU 137 n 137 LEU 137 A SER 138 n 138 SER 138 A LEU 139 n 139 LEU 139 A PRO 140 n 140 PRO 140 A SER 141 n 141 SER 141 A SER 142 n 142 SER 142 A GLU 143 n 143 GLU 143 A PHE 144 n 144 PHE 144 A SER 145 n 145 SER 145 A LYS 146 n 146 LYS 146 A ILE 147 n 147 ILE 147 A VAL 148 n 148 VAL 148 A ARG 149 n 149 ARG 149 A ASP 150 n 150 ASP 150 A LEU 151 n 151 LEU 151 A SER 152 n 152 SER 152 A GLN 153 n 153 GLN 153 A LEU 154 n 154 LEU 154 A SER 155 n 155 SER 155 A ASP 156 n 156 ASP 156 A SER 157 n 157 SER 157 A ILE 158 n 158 ILE 158 A ASN 159 n 159 ASN 159 A ILE 160 n 160 ILE 160 A MET 161 n 161 MET 161 A ILE 162 n 162 ILE 162 A THR 163 n 163 THR 163 A LYS 164 n 164 LYS 164 A GLU 165 n 165 GLU 165 A THR 166 n 166 THR 166 A ILE 167 n 167 ILE 167 A LYS 168 n 168 LYS 168 A PHE 169 n 169 PHE 169 A VAL 170 n 170 VAL 170 A ALA 171 n 171 ALA 171 A ASP 172 n 172 ASP 172 A GLY 173 n 173 GLY 173 A ASP 174 n 174 ASP 174 A ILE 175 n 175 ILE 175 A GLY 176 n 176 GLY 176 A SER 177 n 177 SER 177 A GLY 178 n 178 GLY 178 A SER 179 n 179 SER 179 A VAL 180 n 180 VAL 180 A ILE 181 n 181 ILE 181 A ILE 182 n 182 ILE 182 A LYS 183 n 183 LYS 183 A PRO 184 n 184 PRO 184 A PHE 185 n 185 PHE 185 A VAL 186 n 186 VAL 186 A ASP 187 n 187 ASP 187 A MET 188 n 188 MET 188 A GLU 189 n 189 GLU 189 A HIS 190 n 190 HIS 190 A PRO 191 n 191 PRO 191 A GLU 192 n 192 GLU 192 A THR 193 n 193 THR 193 A SER 194 n 194 SER 194 A ILE 195 n 195 ILE 195 A LYS 196 n 196 LYS 196 A LEU 197 n 197 LEU 197 A GLU 198 n 198 GLU 198 A MET 199 n 199 MET 199 A ASP 200 n 200 ASP 200 A GLN 201 n 201 GLN 201 A PRO 202 n 202 PRO 202 A VAL 203 n 203 VAL 203 A ASP 204 n 204 ASP 204 A LEU 205 n 205 LEU 205 A THR 206 n 206 THR 206 A PHE 207 n 207 PHE 207 A GLY 208 n 208 GLY 208 A ALA 209 n 209 ALA 209 A LYS 210 n 210 LYS 210 A TYR 211 n 211 TYR 211 A LEU 212 n 212 LEU 212 A LEU 213 n 213 LEU 213 A ASP 214 n 214 ASP 214 A ILE 215 n 215 ILE 215 A ILE 216 n 216 ILE 216 A LYS 217 n 217 LYS 217 A GLY 218 n 218 GLY 218 A SER 219 n 219 SER 219 A SER 220 n 220 SER 220 A LEU 221 n 221 LEU 221 A SER 222 n 222 SER 222 A ASP 223 n 223 ASP 223 A ARG 224 n 224 ARG 224 A VAL 225 n 225 VAL 225 A GLY 226 n 226 GLY 226 A ILE 227 n 227 ILE 227 A ARG 228 n 228 ARG 228 A LEU 229 n 229 LEU 229 A SER 230 n 230 SER 230 A SER 231 n 231 SER 231 A GLU 232 n 232 GLU 232 A ALA 233 n 233 ALA 233 A PRO 234 n 234 PRO 234 A ALA 235 n 235 ALA 235 A LEU 236 n 236 LEU 236 A PHE 237 n 237 PHE 237 A GLN 238 n 238 GLN 238 A PHE 239 n 239 PHE 239 A ASP 240 n 240 ASP 240 A LEU 241 n 241 LEU 241 A LYS 242 n 242 LYS 242 A SER 243 n 243 SER 243 A GLY 244 n 244 GLY 244 A PHE 245 n 245 PHE 245 A LEU 246 n 246 LEU 246 A GLN 247 n 247 GLN 247 A PHE 248 n 248 PHE 248 A PHE 249 n 249 PHE 249 A LEU 250 n 250 LEU 250 A ALA 251 n 251 ALA 251 A PRO 252 n 252 PRO 252 A LYS 253 n 253 LYS 253 A PHE 254 n 254 PHE 254 A ASN 255 n 255 ASN 255 A n 256 256 A n 257 257 A n 258 258 A n 1 32 B n 2 33 B n 3 34 B LYS 35 n 4 LYS 35 B PRO 36 n 5 PRO 36 B LYS 37 n 6 LYS 37 B GLN 38 n 7 GLN 38 B ALA 39 n 8 ALA 39 B THR 40 n 9 THR 40 B LEU 41 n 10 LEU 41 B ALA 42 n 11 ALA 42 B ARG 43 n 12 ARG 43 B PHE 44 n 13 PHE 44 B PHE 45 n 14 PHE 45 B n 15 46 B n 16 47 B n 17 48 B n 18 49 B n 19 50 B n 20 51 B n 21 52 B n 22 53 B 11.4663 -4.1276 13.9890 14.7756 1.2566 20.0460 1.2736 -0.5391 -1.3595 0.9956 -0.8022 -2.6504 -1.1780 2.0207 -0.4714 1.1783 0.3405 0.0515 1.0623 0.0162 1.1730 refined 140.5880 18.2650 47.4900 X-RAY DIFFRACTION 4.1147 4.8737 -0.8938 7.7453 0.6118 1.6087 0.1806 -0.2079 -0.0507 1.0719 0.1373 -0.1509 0.7841 0.1530 -0.3179 0.9884 0.1721 -0.2015 0.5305 0.0537 0.4796 refined 119.4550 21.1500 51.0470 X-RAY DIFFRACTION B 35 B 4 B 45 B 14 X-RAY DIFFRACTION 1 A 1 A 1 A 255 A 255 X-RAY DIFFRACTION 2 author_defined_assembly 6 hexameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 7_665 -z+1,-x+1,y crystal symmetry operation 139.2800000000 139.2800000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -1.0000000000 0.0000000000 0.0000000000 10_656 -y+1,z,-x+1 crystal symmetry operation 139.2800000000 0.0000000000 139.2800000000 A O ARG 61 A O ARG 61 A N GLU 3 A N GLU 3 A N PHE 6 A N PHE 6 A O LEU 88 A O LEU 88 A N ILE 91 A N ILE 91 A O ILE 100 A O ILE 100 A N PHE 103 A N PHE 103 A O ALA 112 A O ALA 112 A O VAL 66 A O VAL 66 A N CYS 30 A N CYS 30 A N GLN 29 A N GLN 29 A O ILE 36 A O ILE 36 A N ALA 39 A N ALA 39 A O VAL 48 A O VAL 48 A N SER 49 A N SER 49 A O GLN 247 A O GLN 247 A O PHE 248 A O PHE 248 A N PHE 237 A N PHE 237 A O GLN 238 A O GLN 238 A N GLY 226 A N GLY 226 A O ILE 227 A O ILE 227 A N LEU 137 A N LEU 137 A N SER 138 A N SER 138 A O LYS 196 A O LYS 196 A O VAL 180 A O VAL 180 A N PHE 169 A N PHE 169 A O VAL 170 A O VAL 170 A N ASN 159 A N ASN 159 A N ILE 158 A N ILE 158 A O PHE 207 A O PHE 207 A N PHE 254 A N PHE 254 B O LYS 37 B O LYS 6 1 A ASP 256 A ASP 256 1 Y 1 A GLU 257 A GLU 257 1 Y 1 A GLU 258 A GLU 258 1 Y 1 B ALA 32 B ALA 1 1 Y 1 B GLY 33 B GLY 2 1 Y 1 B LYS 34 B LYS 3 1 Y 1 B THR 46 B THR 15 1 Y 1 B SER 47 B SER 16 1 Y 1 B MET 48 B MET 17 1 Y 1 B LYS 49 B LYS 18 1 Y 1 B ASN 50 B ASN 19 1 Y 1 B LYS 51 B LYS 20 1 Y 1 B PRO 52 B PRO 21 1 Y 1 B THR 53 B THR 22 1 Y 1 A GLN 24 -101.61 -61.74 1 A LYS 31 -116.39 -152.65 1 A ASN 83 -68.94 87.73 1 A ARG 110 -146.43 54.41 1 A ASP 122 75.15 47.35 1 A ALA 123 -122.20 -161.13 1 A THR 163 -112.18 -164.41 27.318 0.935 0.921 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.28527 0.24681 0.24865 2.80 29.70 537 11219 10682 4.8 99.75 43.060 0.371 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.0 0.0 MOLECULAR REPLACEMENT 0.684 0.361 0.80 0.80 1.20 PDB entry 1PLQ MAXIMUM LIKELIHOOD MASK 2.80 29.70 18 2113 0 0 2095 0.007 0.022 2127 1.081 1.991 2866 6.097 5.000 264 35.102 25.376 93 16.997 15.000 404 19.664 15.000 9 0.071 0.200 337 0.003 0.020 1550 0.160 0.300 877 0.313 0.500 1423 0.172 0.500 111 0.125 0.300 31 0.168 0.500 6 0.338 1.500 1362 0.607 2.000 2148 0.525 3.000 837 0.879 4.500 718 0.3 0.393 2.872 39 786 20 99.16 94 2.8 40 2OD8 11287 11287 0.0 0.0 0.039 0.039 1 5.0 4.4 99.2 0.418 2.8 2.9 2.0 1104 0.418 1 3.1 99.2 refinement REFMAC 5.2.0019 data collection Blu-Ice data reduction MOSFLM data scaling CCP4 (SCALA) phasing AMoRE Structure of a peptide derived from Cdc9 bound to PCNA 1 N N 2 N N 3 N N 3 N N The biological assembly is a trimer generated from the monomer in the asymmetric unit by the operations: -y, z, -x and -z, -x, y A GLU 8 A GLU 8 HELX_P A GLY 18 A GLY 18 1 1 11 A LEU 72 A LEU 72 HELX_P A ARG 80 A ARG 80 1 2 9 A SER 141 A SER 141 HELX_P A SER 152 A SER 152 1 3 12 A HIS 190 A HIS 190 HELX_P A SER 194 A SER 194 5 4 5 A ALA 209 A ALA 209 HELX_P A ILE 216 A ILE 216 1 5 8 A LYS 217 A LYS 217 HELX_P A LEU 221 A LEU 221 5 6 5 B THR 40 B THR 9 HELX_P B PHE 45 B PHE 14 5 7 6 PROTEIN BINDING homotrimer, PCNA-peptide complex, PCNA, PROTEIN BINDING A ILE 52 A ILE 52 1 A GLY 53 A GLY 53 9.56 A ASN 84 A ASN 84 1 A THR 85 A THR 85 3.31 A LYS 108 A LYS 108 1 A ASP 109 A ASP 109 5.36 A ILE 121 A ILE 121 1 A ASP 122 A ASP 122 22.80 A GLU 129 A GLU 129 1 A GLU 130 A GLU 130 -19.59 A LYS 242 A LYS 242 1 A SER 243 A SER 243 3.64 PCNA_YEAST UNP 1 1 P15873 MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILR CGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINI MITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFD LKSGFLQFFLAPKFNDEE DNLI_YEAST UNP 2 32 P04819 AGKKPKQATLARFFTSMKNKPT 1 258 2OD8 1 258 P15873 A 1 1 258 32 53 2OD8 32 53 P04819 B 2 1 22 5 9 4 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A PHE 57 A PHE 57 A CYS 62 A CYS 62 A LEU 2 A LEU 2 A PHE 6 A PHE 6 A THR 87 A THR 87 A ALA 92 A ALA 92 A SER 98 A SER 98 A GLU 104 A GLU 104 A ALA 112 A ALA 112 A LYS 117 A LYS 117 A VAL 66 A VAL 66 A ASP 71 A ASP 71 A LEU 25 A LEU 25 A CYS 30 A CYS 30 A ILE 35 A ILE 35 A VAL 40 A VAL 40 A LEU 46 A LEU 46 A ILE 52 A ILE 52 A GLY 244 A GLY 244 A LEU 250 A LEU 250 A ALA 235 A ALA 235 A LEU 241 A LEU 241 A ARG 224 A ARG 224 A LEU 229 A LEU 229 A SER 135 A SER 135 A PRO 140 A PRO 140 A LYS 196 A LYS 196 A MET 199 A MET 199 A SER 177 A SER 177 A ILE 182 A ILE 182 A THR 166 A THR 166 A ASP 172 A ASP 172 A SER 157 A SER 157 A THR 163 A THR 163 A VAL 203 A VAL 203 A GLY 208 A GLY 208 A LYS 253 A LYS 253 A PHE 254 A PHE 254 B LYS 37 B LYS 6 B GLN 38 B GLN 7 197 I 2 3