0.027445
0.000000
0.000000
0.000000
0.027445
0.000000
0.000000
0.000000
0.012694
0.00000
0.00000
0.00000
Meiyappan, M.
Birrane, G.
Ladias, J.A.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
36.436
36.436
78.780
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
O
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
N
N
58
S
C
N
59
N
C
N
60
N
O
N
61
N
C
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
N
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
N
N
78
S
C
N
79
N
C
N
80
N
O
N
81
N
C
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
O
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
N
C
N
98
N
C
N
99
N
O
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
N
C
Y
111
N
C
Y
112
N
N
Y
113
N
C
Y
114
N
C
Y
115
N
N
N
116
N
O
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
S
C
N
135
N
C
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
S
C
N
154
N
C
N
155
N
O
N
156
N
C
N
157
N
C
N
158
N
C
N
159
N
C
N
160
N
O
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
N
N
175
S
C
N
176
N
C
N
177
N
O
N
178
N
C
N
179
N
C
N
180
N
S
N
181
N
C
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
N
N
212
S
C
N
213
N
C
N
214
N
O
N
215
N
C
N
216
N
O
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
R
C
N
230
N
O
N
231
N
C
N
232
N
O
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
N
N
243
S
C
N
244
N
C
N
245
N
O
N
246
N
C
Y
247
N
C
Y
248
N
C
Y
249
N
C
Y
250
N
N
Y
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
N
280
N
O
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
C
N
299
N
C
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
doub
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
Y
111
N
sing
Y
112
N
doub
Y
113
N
doub
N
114
N
sing
Y
115
N
sing
N
116
N
sing
Y
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
Y
241
N
doub
Y
242
N
sing
Y
243
N
sing
N
244
N
sing
Y
245
N
doub
Y
246
N
sing
Y
247
N
sing
N
248
N
sing
Y
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
Y
269
N
doub
Y
270
N
sing
Y
271
N
sing
N
272
N
sing
Y
273
N
doub
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
372
970
980
10.1016/j.jmb.2007.06.064
17686488
Structural Basis for Polyproline Recognition by the FE65 WW Domain.
2007
10.2210/pdb2oei/pdb
pdb_00002oei
100
1
CCD
2006-09-19
ADSC QUANTUM 4
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
X12B
NSLS
1.000
SYNCHROTRON
NSLS BEAMLINE X12B
4194.533
Amyloid beta A4 protein-binding family B member 1
WW domain (residues 253-289)
1
man
polymer
908.091
poly-proline peptide
1
syn
polymer
18.015
water
36
nat
water
Fe65 protein
no
no
GSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRASPS
GSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRASPS
A
polypeptide(L)
no
no
PPPPPPLPP
PPPPPPLPP
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
APBB1, FE65
9606
Homo sapiens
562
Escherichia coli
Plasmid
PGEX-KT
1
2.56
51.87
VAPOR DIFFUSION, SITTING DROP
7.6
1.3 M sodium citrate, 0.1M hepes, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
software
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
1
0
2007-07-10
1
1
2007-09-17
1
2
2011-07-13
1
3
2017-10-18
1
4
2023-12-27
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
The same protein complexed with different peptide from human-Mena
The same protein in apo-form
RCSB
Y
RCSB
2006-12-29
REL
REL
HOH
water
The peptide was chemically synthesized. The sequence of the peptide can be naturally found in Homo sapiens (Human).
sample
HOH
1
3
HOH
HOH
290
A
HOH
2
3
HOH
HOH
291
A
HOH
3
3
HOH
HOH
292
A
HOH
4
3
HOH
HOH
293
A
HOH
5
3
HOH
HOH
294
A
HOH
6
3
HOH
HOH
295
A
HOH
8
3
HOH
HOH
296
A
HOH
9
3
HOH
HOH
297
A
HOH
10
3
HOH
HOH
298
A
HOH
11
3
HOH
HOH
299
A
HOH
12
3
HOH
HOH
300
A
HOH
13
3
HOH
HOH
301
A
HOH
14
3
HOH
HOH
302
A
HOH
16
3
HOH
HOH
303
A
HOH
17
3
HOH
HOH
304
A
HOH
19
3
HOH
HOH
305
A
HOH
20
3
HOH
HOH
306
A
HOH
21
3
HOH
HOH
307
A
HOH
22
3
HOH
HOH
308
A
HOH
23
3
HOH
HOH
309
A
HOH
24
3
HOH
HOH
310
A
HOH
25
3
HOH
HOH
311
A
HOH
26
3
HOH
HOH
312
A
HOH
27
3
HOH
HOH
313
A
HOH
28
3
HOH
HOH
314
A
HOH
29
3
HOH
HOH
315
A
HOH
30
3
HOH
HOH
316
A
HOH
31
3
HOH
HOH
317
A
HOH
32
3
HOH
HOH
318
A
HOH
33
3
HOH
HOH
319
A
HOH
34
3
HOH
HOH
320
A
HOH
35
3
HOH
HOH
321
A
HOH
36
3
HOH
HOH
322
A
HOH
7
3
HOH
HOH
10
B
HOH
15
3
HOH
HOH
11
B
HOH
18
3
HOH
HOH
12
B
GLY
252
n
1
GLY
252
A
SER
253
n
2
SER
253
A
ASP
254
n
3
ASP
254
A
LEU
255
n
4
LEU
255
A
PRO
256
n
5
PRO
256
A
ALA
257
n
6
ALA
257
A
GLY
258
n
7
GLY
258
A
TRP
259
n
8
TRP
259
A
MET
260
n
9
MET
260
A
ARG
261
n
10
ARG
261
A
VAL
262
n
11
VAL
262
A
GLN
263
n
12
GLN
263
A
ASP
264
n
13
ASP
264
A
THR
265
n
14
THR
265
A
SER
266
n
15
SER
266
A
GLY
267
n
16
GLY
267
A
THR
268
n
17
THR
268
A
TYR
269
n
18
TYR
269
A
TYR
270
n
19
TYR
270
A
TRP
271
n
20
TRP
271
A
HIS
272
n
21
HIS
272
A
ILE
273
n
22
ILE
273
A
PRO
274
n
23
PRO
274
A
THR
275
n
24
THR
275
A
GLY
276
n
25
GLY
276
A
THR
277
n
26
THR
277
A
THR
278
n
27
THR
278
A
GLN
279
n
28
GLN
279
A
TRP
280
n
29
TRP
280
A
GLU
281
n
30
GLU
281
A
PRO
282
n
31
PRO
282
A
PRO
283
n
32
PRO
283
A
GLY
284
n
33
GLY
284
A
ARG
285
n
34
ARG
285
A
ALA
286
n
35
ALA
286
A
SER
287
n
36
SER
287
A
PRO
288
n
37
PRO
288
A
n
38
289
A
PRO
1
n
1
PRO
1
B
PRO
2
n
2
PRO
2
B
PRO
3
n
3
PRO
3
B
PRO
4
n
4
PRO
4
B
PRO
5
n
5
PRO
5
B
PRO
6
n
6
PRO
6
B
LEU
7
n
7
LEU
7
B
PRO
8
n
8
PRO
8
B
PRO
9
n
9
PRO
9
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
MET
260
A
N
MET
9
A
O
TRP
271
A
O
TRP
20
A
N
TYR
270
A
N
TYR
19
A
O
GLN
279
A
O
GLN
28
1
A
HOH
301
C
HOH
1
A
SER
289
A
SER
38
1
Y
1
A
ARG
285
-114.20
-86.72
1
A
ALA
286
-128.01
-115.27
21.119
0.00
0.00
0.00
0.00
0.00
0.01
0.953
0.945
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.2238
0.19226
0.1938
1.35
25.77
586
11423
4.9
97.65
1.658
0.031
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.060
0.058
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.35
25.77
36
401
0
0
365
0.019
0.022
387
0.002
0.020
275
1.711
1.985
542
1.073
3.000
674
6.595
5.000
47
37.147
22.308
13
14.316
15.000
39
7.731
15.000
2
0.096
0.200
53
0.010
0.020
417
0.001
0.020
66
0.217
0.200
56
0.210
0.200
252
0.192
0.200
169
0.090
0.200
170
0.144
0.200
25
0.066
0.200
7
0.225
0.200
20
0.079
0.200
6
2.349
1.500
296
0.917
1.500
87
2.954
2.000
408
4.083
3.000
178
4.502
4.500
133
3.180
3.000
850
9.964
3.000
36
4.441
3.000
640
0.292
0.252
1.385
57
814
20
99.54
1.270
50.000
2OEI
14732
14379
2.0
2.0
0.044
0.036
1
21.400
7.500
97.600
0.386
1.27
1.32
5.40
93.50
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
5.2.0019
data extraction
PDB
sw-help@rcsb.rutgers.edu
April. 3, 2006
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
2.000
data collection
ADSC
Quantum
data reduction
HKL-2000
phasing
MOLREP
Crystal structure of human FE65-WW domain in complex with human Mena peptide
1
N
N
2
N
N
3
N
N
3
N
N
PROTEIN BINDING
WW domain, FE65, human Mena, PROTEIN BINDING
A
GLY
252
A
GLY
1
1
A
SER
253
A
SER
2
22.25
A
PRO
283
A
PRO
32
1
A
GLY
284
A
GLY
33
1.62
A
ARG
285
A
ARG
34
1
A
ALA
286
A
ALA
35
-2.32
A
ALA
286
A
ALA
35
1
A
SER
287
A
SER
36
-0.95
APBB1_HUMAN
UNP
1
253
O00213
SDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRASPS
2OEI
PDB
2
2OEI
253
289
2OEI
253
289
O00213
A
1
2
38
1
9
2OEI
1
9
2OEI
B
2
1
9
1
expression tag
GLY
252
2OEI
A
O00213
UNP
1
3
anti-parallel
anti-parallel
A
TRP
259
A
TRP
8
A
ASP
264
A
ASP
13
A
GLY
267
A
GLY
16
A
HIS
272
A
HIS
21
A
THR
278
A
THR
27
A
GLN
279
A
GLN
28
92
P 41 21 2