0.027445 0.000000 0.000000 0.000000 0.027445 0.000000 0.000000 0.000000 0.012694 0.00000 0.00000 0.00000 Meiyappan, M. Birrane, G. Ladias, J.A.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 36.436 36.436 78.780 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N O N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N N N 58 S C N 59 N C N 60 N O N 61 N C N 62 N C N 63 N C N 64 N O N 65 N N N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N N N 78 S C N 79 N C N 80 N O N 81 N C N 82 N C N 83 N C N 84 N O N 85 N O N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N N N 97 N C N 98 N C N 99 N O N 100 N O N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N N N 107 S C N 108 N C N 109 N O N 110 N C Y 111 N C Y 112 N N Y 113 N C Y 114 N C Y 115 N N N 116 N O N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N O N 128 N H N 129 N H N 130 N N N 131 S C N 132 N C N 133 N O N 134 S C N 135 N C N 136 N C N 137 N C N 138 N O N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N N N 153 S C N 154 N C N 155 N O N 156 N C N 157 N C N 158 N C N 159 N C N 160 N O N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N N N 175 S C N 176 N C N 177 N O N 178 N C N 179 N C N 180 N S N 181 N C N 182 N O N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N N N 195 S C N 196 N C N 197 N O N 198 N C N 199 N C N 200 N C N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N N N 212 S C N 213 N C N 214 N O N 215 N C N 216 N O N 217 N O N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N N N 226 S C N 227 N C N 228 N O N 229 R C N 230 N O N 231 N C N 232 N O N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N N N 243 S C N 244 N C N 245 N O N 246 N C Y 247 N C Y 248 N C Y 249 N C Y 250 N N Y 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C N 256 N O N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N N N 270 S C N 271 N C N 272 N O N 273 N C Y 274 N C Y 275 N C Y 276 N C Y 277 N C Y 278 N C Y 279 N C N 280 N O N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 S C N 295 N C N 296 N O N 297 N C N 298 N C N 299 N C N 300 N O N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N doub N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing Y 111 N sing Y 112 N doub Y 113 N doub N 114 N sing Y 115 N sing N 116 N sing Y 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing Y 241 N doub Y 242 N sing Y 243 N sing N 244 N sing Y 245 N doub Y 246 N sing Y 247 N sing N 248 N sing Y 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing Y 269 N doub Y 270 N sing Y 271 N sing N 272 N sing Y 273 N doub N 274 N sing Y 275 N doub N 276 N sing Y 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 372 970 980 10.1016/j.jmb.2007.06.064 17686488 Structural Basis for Polyproline Recognition by the FE65 WW Domain. 2007 10.2210/pdb2oei/pdb pdb_00002oei 100 1 CCD 2006-09-19 ADSC QUANTUM 4 Si(111) SINGLE WAVELENGTH M x-ray 1 1.000 1.0 X12B NSLS 1.000 SYNCHROTRON NSLS BEAMLINE X12B 4194.533 Amyloid beta A4 protein-binding family B member 1 WW domain (residues 253-289) 1 man polymer 908.091 poly-proline peptide 1 syn polymer 18.015 water 36 nat water Fe65 protein no no GSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRASPS GSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRASPS A polypeptide(L) no no PPPPPPLPP PPPPPPLPP B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample APBB1, FE65 9606 Homo sapiens 562 Escherichia coli Plasmid PGEX-KT 1 2.56 51.87 VAPOR DIFFUSION, SITTING DROP 7.6 1.3 M sodium citrate, 0.1M hepes, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 software chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references 1 0 2007-07-10 1 1 2007-09-17 1 2 2011-07-13 1 3 2017-10-18 1 4 2023-12-27 _software.classification _software.contact_author _software.contact_author_email _software.date _software.language _software.location _software.name _software.type _software.version _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details The same protein complexed with different peptide from human-Mena The same protein in apo-form RCSB Y RCSB 2006-12-29 REL REL HOH water The peptide was chemically synthesized. The sequence of the peptide can be naturally found in Homo sapiens (Human). sample HOH 1 3 HOH HOH 290 A HOH 2 3 HOH HOH 291 A HOH 3 3 HOH HOH 292 A HOH 4 3 HOH HOH 293 A HOH 5 3 HOH HOH 294 A HOH 6 3 HOH HOH 295 A HOH 8 3 HOH HOH 296 A HOH 9 3 HOH HOH 297 A HOH 10 3 HOH HOH 298 A HOH 11 3 HOH HOH 299 A HOH 12 3 HOH HOH 300 A HOH 13 3 HOH HOH 301 A HOH 14 3 HOH HOH 302 A HOH 16 3 HOH HOH 303 A HOH 17 3 HOH HOH 304 A HOH 19 3 HOH HOH 305 A HOH 20 3 HOH HOH 306 A HOH 21 3 HOH HOH 307 A HOH 22 3 HOH HOH 308 A HOH 23 3 HOH HOH 309 A HOH 24 3 HOH HOH 310 A HOH 25 3 HOH HOH 311 A HOH 26 3 HOH HOH 312 A HOH 27 3 HOH HOH 313 A HOH 28 3 HOH HOH 314 A HOH 29 3 HOH HOH 315 A HOH 30 3 HOH HOH 316 A HOH 31 3 HOH HOH 317 A HOH 32 3 HOH HOH 318 A HOH 33 3 HOH HOH 319 A HOH 34 3 HOH HOH 320 A HOH 35 3 HOH HOH 321 A HOH 36 3 HOH HOH 322 A HOH 7 3 HOH HOH 10 B HOH 15 3 HOH HOH 11 B HOH 18 3 HOH HOH 12 B GLY 252 n 1 GLY 252 A SER 253 n 2 SER 253 A ASP 254 n 3 ASP 254 A LEU 255 n 4 LEU 255 A PRO 256 n 5 PRO 256 A ALA 257 n 6 ALA 257 A GLY 258 n 7 GLY 258 A TRP 259 n 8 TRP 259 A MET 260 n 9 MET 260 A ARG 261 n 10 ARG 261 A VAL 262 n 11 VAL 262 A GLN 263 n 12 GLN 263 A ASP 264 n 13 ASP 264 A THR 265 n 14 THR 265 A SER 266 n 15 SER 266 A GLY 267 n 16 GLY 267 A THR 268 n 17 THR 268 A TYR 269 n 18 TYR 269 A TYR 270 n 19 TYR 270 A TRP 271 n 20 TRP 271 A HIS 272 n 21 HIS 272 A ILE 273 n 22 ILE 273 A PRO 274 n 23 PRO 274 A THR 275 n 24 THR 275 A GLY 276 n 25 GLY 276 A THR 277 n 26 THR 277 A THR 278 n 27 THR 278 A GLN 279 n 28 GLN 279 A TRP 280 n 29 TRP 280 A GLU 281 n 30 GLU 281 A PRO 282 n 31 PRO 282 A PRO 283 n 32 PRO 283 A GLY 284 n 33 GLY 284 A ARG 285 n 34 ARG 285 A ALA 286 n 35 ALA 286 A SER 287 n 36 SER 287 A PRO 288 n 37 PRO 288 A n 38 289 A PRO 1 n 1 PRO 1 B PRO 2 n 2 PRO 2 B PRO 3 n 3 PRO 3 B PRO 4 n 4 PRO 4 B PRO 5 n 5 PRO 5 B PRO 6 n 6 PRO 6 B LEU 7 n 7 LEU 7 B PRO 8 n 8 PRO 8 B PRO 9 n 9 PRO 9 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N MET 260 A N MET 9 A O TRP 271 A O TRP 20 A N TYR 270 A N TYR 19 A O GLN 279 A O GLN 28 1 A HOH 301 C HOH 1 A SER 289 A SER 38 1 Y 1 A ARG 285 -114.20 -86.72 1 A ALA 286 -128.01 -115.27 21.119 0.00 0.00 0.00 0.00 0.00 0.01 0.953 0.945 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.2238 0.19226 0.1938 1.35 25.77 586 11423 4.9 97.65 1.658 0.031 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.060 0.058 0.80 0.80 1.40 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.35 25.77 36 401 0 0 365 0.019 0.022 387 0.002 0.020 275 1.711 1.985 542 1.073 3.000 674 6.595 5.000 47 37.147 22.308 13 14.316 15.000 39 7.731 15.000 2 0.096 0.200 53 0.010 0.020 417 0.001 0.020 66 0.217 0.200 56 0.210 0.200 252 0.192 0.200 169 0.090 0.200 170 0.144 0.200 25 0.066 0.200 7 0.225 0.200 20 0.079 0.200 6 2.349 1.500 296 0.917 1.500 87 2.954 2.000 408 4.083 3.000 178 4.502 4.500 133 3.180 3.000 850 9.964 3.000 36 4.441 3.000 640 0.292 0.252 1.385 57 814 20 99.54 1.270 50.000 2OEI 14732 14379 2.0 2.0 0.044 0.036 1 21.400 7.500 97.600 0.386 1.27 1.32 5.40 93.50 data reduction Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm DENZO package data scaling Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm SCALEPACK package refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program 5.2.0019 data extraction PDB sw-help@rcsb.rutgers.edu April. 3, 2006 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 2.000 data collection ADSC Quantum data reduction HKL-2000 phasing MOLREP Crystal structure of human FE65-WW domain in complex with human Mena peptide 1 N N 2 N N 3 N N 3 N N PROTEIN BINDING WW domain, FE65, human Mena, PROTEIN BINDING A GLY 252 A GLY 1 1 A SER 253 A SER 2 22.25 A PRO 283 A PRO 32 1 A GLY 284 A GLY 33 1.62 A ARG 285 A ARG 34 1 A ALA 286 A ALA 35 -2.32 A ALA 286 A ALA 35 1 A SER 287 A SER 36 -0.95 APBB1_HUMAN UNP 1 253 O00213 SDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRASPS 2OEI PDB 2 2OEI 253 289 2OEI 253 289 O00213 A 1 2 38 1 9 2OEI 1 9 2OEI B 2 1 9 1 expression tag GLY 252 2OEI A O00213 UNP 1 3 anti-parallel anti-parallel A TRP 259 A TRP 8 A ASP 264 A ASP 13 A GLY 267 A GLY 16 A HIS 272 A HIS 21 A THR 278 A THR 27 A GLN 279 A GLN 28 92 P 41 21 2