0.023507
0.000000
0.000000
0.000000
0.021705
0.000000
0.000000
0.000000
0.012219
0.00000
0.00000
0.00000
Shumilin, I.A.
Skarina, T.
Onopriyenko, O.
Yim, V.
Chruszcz, M.
Cymborowski, M.
Savchenko, A.
Edwards, A.
Joachimiak, A.
0000-0001-7075-7090
Minor, W.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
42.540
46.073
81.842
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
O
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
N
N
58
S
C
N
59
N
C
N
60
N
O
N
61
N
C
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
N
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
N
N
78
S
C
N
79
N
C
N
80
N
O
N
81
N
C
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
O
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
N
C
N
98
N
C
N
99
N
O
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
O
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
S
C
N
114
N
C
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
N
N
132
S
C
N
133
N
C
N
134
N
O
N
135
N
C
N
136
N
C
N
137
N
C
N
138
N
C
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
S
C
N
155
N
C
N
156
N
O
N
157
N
C
N
158
N
C
N
159
N
C
N
160
N
C
N
161
N
N
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
N
N
179
S
C
N
180
N
C
N
181
N
O
N
182
N
C
N
183
N
C
N
184
N
S
N
185
N
C
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
O
N
203
N
C
N
204
N
C
N
205
N
SE
N
206
N
C
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
Y
223
N
C
Y
224
N
C
Y
225
N
C
Y
226
N
C
Y
227
N
C
Y
228
N
C
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
O
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
R
C
N
277
N
O
N
278
N
C
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
doub
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
Y
217
N
doub
Y
218
N
sing
Y
219
N
sing
N
220
N
sing
Y
221
N
doub
N
222
N
sing
Y
223
N
doub
N
224
N
sing
Y
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
To be Published
0353
Crystal structure of putative XRE-family transcriptional regulator from Rhodococcus sp.
0000-0001-7075-7090
10.2210/pdb2ofy/pdb
pdb_00002ofy
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2006-06-10
SBC-3
SI 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.97904
1.0
19-BM
APS
0.97904
SYNCHROTRON
APS BEAMLINE 19-BM
9314.261
Putative XRE-family transcriptional regulator
2
man
polymer
18.015
water
241
nat
water
no
yes
(MSE)VRVPLTAEELERGQRLGELLRSARGD(MSE)S(MSE)VTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLD
LSLDDVAAVVTFGPVSTS
MVRVPLTAEELERGQRLGELLRSARGDMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVVTF
GPVSTS
A,B
APC6236
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Rhodococcus
RHA1
Escherichia
sample
RHA1_ro04071
101510
Rhodococcus sp.
562
Escherichia coli
BL21-CodonPlus(DE3)-RP
PLASMID
p15TV
1
2.15
42.84
VAPOR DIFFUSION, HANGING DROP
7.5
25% PEG 3350, 0.2M Lithium sulfate, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
Midwest Center for Structural Genomics
MCSG
PSI, Protein Structure Initiative
audit_author
citation_author
database_2
struct_conn
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Advisory
Source and taxonomy
Version format compliance
Database references
Derived calculations
Structure summary
Data collection
1
0
2007-01-16
1
1
2008-05-01
1
2
2011-07-13
1
3
2022-04-13
1
4
2023-12-27
_audit_author.identifier_ORCID
_citation_author.identifier_ORCID
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
Y
RCSB
Y
RCSB
2007-01-04
REL
REL
HOH
water
HOH
2
2
HOH
HOH
87
A
HOH
4
2
HOH
HOH
88
A
HOH
5
2
HOH
HOH
89
A
HOH
7
2
HOH
HOH
90
A
HOH
8
2
HOH
HOH
91
A
HOH
9
2
HOH
HOH
92
A
HOH
11
2
HOH
HOH
93
A
HOH
12
2
HOH
HOH
94
A
HOH
13
2
HOH
HOH
95
A
HOH
14
2
HOH
HOH
96
A
HOH
15
2
HOH
HOH
97
A
HOH
16
2
HOH
HOH
98
A
HOH
19
2
HOH
HOH
99
A
HOH
20
2
HOH
HOH
100
A
HOH
21
2
HOH
HOH
101
A
HOH
23
2
HOH
HOH
102
A
HOH
25
2
HOH
HOH
103
A
HOH
27
2
HOH
HOH
104
A
HOH
28
2
HOH
HOH
105
A
HOH
29
2
HOH
HOH
106
A
HOH
34
2
HOH
HOH
107
A
HOH
35
2
HOH
HOH
108
A
HOH
36
2
HOH
HOH
109
A
HOH
38
2
HOH
HOH
110
A
HOH
40
2
HOH
HOH
111
A
HOH
41
2
HOH
HOH
112
A
HOH
42
2
HOH
HOH
113
A
HOH
47
2
HOH
HOH
114
A
HOH
48
2
HOH
HOH
115
A
HOH
49
2
HOH
HOH
116
A
HOH
50
2
HOH
HOH
117
A
HOH
51
2
HOH
HOH
118
A
HOH
53
2
HOH
HOH
119
A
HOH
56
2
HOH
HOH
120
A
HOH
57
2
HOH
HOH
121
A
HOH
58
2
HOH
HOH
122
A
HOH
60
2
HOH
HOH
123
A
HOH
64
2
HOH
HOH
124
A
HOH
65
2
HOH
HOH
125
A
HOH
66
2
HOH
HOH
126
A
HOH
67
2
HOH
HOH
127
A
HOH
69
2
HOH
HOH
128
A
HOH
73
2
HOH
HOH
129
A
HOH
75
2
HOH
HOH
130
A
HOH
77
2
HOH
HOH
131
A
HOH
80
2
HOH
HOH
132
A
HOH
84
2
HOH
HOH
133
A
HOH
86
2
HOH
HOH
134
A
HOH
88
2
HOH
HOH
135
A
HOH
89
2
HOH
HOH
136
A
HOH
94
2
HOH
HOH
137
A
HOH
95
2
HOH
HOH
138
A
HOH
100
2
HOH
HOH
139
A
HOH
102
2
HOH
HOH
140
A
HOH
103
2
HOH
HOH
141
A
HOH
104
2
HOH
HOH
142
A
HOH
105
2
HOH
HOH
143
A
HOH
108
2
HOH
HOH
144
A
HOH
109
2
HOH
HOH
145
A
HOH
111
2
HOH
HOH
146
A
HOH
112
2
HOH
HOH
147
A
HOH
113
2
HOH
HOH
148
A
HOH
114
2
HOH
HOH
149
A
HOH
115
2
HOH
HOH
150
A
HOH
117
2
HOH
HOH
151
A
HOH
118
2
HOH
HOH
152
A
HOH
119
2
HOH
HOH
153
A
HOH
120
2
HOH
HOH
154
A
HOH
125
2
HOH
HOH
155
A
HOH
126
2
HOH
HOH
156
A
HOH
130
2
HOH
HOH
157
A
HOH
131
2
HOH
HOH
158
A
HOH
132
2
HOH
HOH
159
A
HOH
134
2
HOH
HOH
160
A
HOH
135
2
HOH
HOH
161
A
HOH
136
2
HOH
HOH
162
A
HOH
137
2
HOH
HOH
163
A
HOH
139
2
HOH
HOH
164
A
HOH
142
2
HOH
HOH
165
A
HOH
143
2
HOH
HOH
166
A
HOH
144
2
HOH
HOH
167
A
HOH
147
2
HOH
HOH
168
A
HOH
148
2
HOH
HOH
169
A
HOH
149
2
HOH
HOH
170
A
HOH
150
2
HOH
HOH
171
A
HOH
151
2
HOH
HOH
172
A
HOH
152
2
HOH
HOH
173
A
HOH
153
2
HOH
HOH
174
A
HOH
154
2
HOH
HOH
175
A
HOH
156
2
HOH
HOH
176
A
HOH
159
2
HOH
HOH
177
A
HOH
160
2
HOH
HOH
178
A
HOH
161
2
HOH
HOH
179
A
HOH
162
2
HOH
HOH
180
A
HOH
164
2
HOH
HOH
181
A
HOH
165
2
HOH
HOH
182
A
HOH
170
2
HOH
HOH
183
A
HOH
171
2
HOH
HOH
184
A
HOH
176
2
HOH
HOH
185
A
HOH
177
2
HOH
HOH
186
A
HOH
180
2
HOH
HOH
187
A
HOH
182
2
HOH
HOH
188
A
HOH
183
2
HOH
HOH
189
A
HOH
185
2
HOH
HOH
190
A
HOH
188
2
HOH
HOH
191
A
HOH
189
2
HOH
HOH
192
A
HOH
190
2
HOH
HOH
193
A
HOH
192
2
HOH
HOH
194
A
HOH
193
2
HOH
HOH
195
A
HOH
194
2
HOH
HOH
196
A
HOH
195
2
HOH
HOH
197
A
HOH
198
2
HOH
HOH
198
A
HOH
200
2
HOH
HOH
199
A
HOH
202
2
HOH
HOH
200
A
HOH
204
2
HOH
HOH
201
A
HOH
206
2
HOH
HOH
202
A
HOH
208
2
HOH
HOH
203
A
HOH
212
2
HOH
HOH
204
A
HOH
215
2
HOH
HOH
205
A
HOH
217
2
HOH
HOH
206
A
HOH
220
2
HOH
HOH
207
A
HOH
222
2
HOH
HOH
208
A
HOH
224
2
HOH
HOH
209
A
HOH
227
2
HOH
HOH
210
A
HOH
230
2
HOH
HOH
211
A
HOH
234
2
HOH
HOH
212
A
HOH
238
2
HOH
HOH
213
A
HOH
1
2
HOH
HOH
87
B
HOH
3
2
HOH
HOH
88
B
HOH
6
2
HOH
HOH
89
B
HOH
10
2
HOH
HOH
90
B
HOH
17
2
HOH
HOH
91
B
HOH
18
2
HOH
HOH
92
B
HOH
22
2
HOH
HOH
93
B
HOH
24
2
HOH
HOH
94
B
HOH
26
2
HOH
HOH
95
B
HOH
30
2
HOH
HOH
96
B
HOH
31
2
HOH
HOH
97
B
HOH
32
2
HOH
HOH
98
B
HOH
33
2
HOH
HOH
99
B
HOH
37
2
HOH
HOH
100
B
HOH
39
2
HOH
HOH
101
B
HOH
43
2
HOH
HOH
102
B
HOH
44
2
HOH
HOH
103
B
HOH
45
2
HOH
HOH
104
B
HOH
46
2
HOH
HOH
105
B
HOH
52
2
HOH
HOH
106
B
HOH
54
2
HOH
HOH
107
B
HOH
55
2
HOH
HOH
108
B
HOH
59
2
HOH
HOH
109
B
HOH
61
2
HOH
HOH
110
B
HOH
62
2
HOH
HOH
111
B
HOH
63
2
HOH
HOH
112
B
HOH
68
2
HOH
HOH
113
B
HOH
70
2
HOH
HOH
114
B
HOH
71
2
HOH
HOH
115
B
HOH
72
2
HOH
HOH
116
B
HOH
74
2
HOH
HOH
117
B
HOH
76
2
HOH
HOH
118
B
HOH
78
2
HOH
HOH
119
B
HOH
79
2
HOH
HOH
120
B
HOH
81
2
HOH
HOH
121
B
HOH
82
2
HOH
HOH
122
B
HOH
83
2
HOH
HOH
123
B
HOH
85
2
HOH
HOH
124
B
HOH
87
2
HOH
HOH
125
B
HOH
90
2
HOH
HOH
126
B
HOH
91
2
HOH
HOH
127
B
HOH
92
2
HOH
HOH
128
B
HOH
93
2
HOH
HOH
129
B
HOH
96
2
HOH
HOH
130
B
HOH
97
2
HOH
HOH
131
B
HOH
98
2
HOH
HOH
132
B
HOH
99
2
HOH
HOH
133
B
HOH
101
2
HOH
HOH
134
B
HOH
106
2
HOH
HOH
135
B
HOH
107
2
HOH
HOH
136
B
HOH
110
2
HOH
HOH
137
B
HOH
116
2
HOH
HOH
138
B
HOH
121
2
HOH
HOH
139
B
HOH
122
2
HOH
HOH
140
B
HOH
123
2
HOH
HOH
141
B
HOH
124
2
HOH
HOH
142
B
HOH
127
2
HOH
HOH
143
B
HOH
128
2
HOH
HOH
144
B
HOH
129
2
HOH
HOH
145
B
HOH
133
2
HOH
HOH
146
B
HOH
138
2
HOH
HOH
147
B
HOH
140
2
HOH
HOH
148
B
HOH
141
2
HOH
HOH
149
B
HOH
145
2
HOH
HOH
150
B
HOH
146
2
HOH
HOH
151
B
HOH
155
2
HOH
HOH
152
B
HOH
157
2
HOH
HOH
153
B
HOH
158
2
HOH
HOH
154
B
HOH
163
2
HOH
HOH
155
B
HOH
166
2
HOH
HOH
156
B
HOH
167
2
HOH
HOH
157
B
HOH
168
2
HOH
HOH
158
B
HOH
169
2
HOH
HOH
159
B
HOH
172
2
HOH
HOH
160
B
HOH
173
2
HOH
HOH
161
B
HOH
174
2
HOH
HOH
162
B
HOH
175
2
HOH
HOH
163
B
HOH
178
2
HOH
HOH
164
B
HOH
179
2
HOH
HOH
165
B
HOH
181
2
HOH
HOH
166
B
HOH
184
2
HOH
HOH
167
B
HOH
186
2
HOH
HOH
168
B
HOH
187
2
HOH
HOH
169
B
HOH
191
2
HOH
HOH
170
B
HOH
196
2
HOH
HOH
171
B
HOH
197
2
HOH
HOH
172
B
HOH
199
2
HOH
HOH
173
B
HOH
201
2
HOH
HOH
174
B
HOH
203
2
HOH
HOH
175
B
HOH
205
2
HOH
HOH
176
B
HOH
207
2
HOH
HOH
177
B
HOH
209
2
HOH
HOH
178
B
HOH
210
2
HOH
HOH
179
B
HOH
211
2
HOH
HOH
180
B
HOH
213
2
HOH
HOH
181
B
HOH
214
2
HOH
HOH
182
B
HOH
216
2
HOH
HOH
183
B
HOH
218
2
HOH
HOH
184
B
HOH
219
2
HOH
HOH
185
B
HOH
221
2
HOH
HOH
186
B
HOH
223
2
HOH
HOH
187
B
HOH
225
2
HOH
HOH
188
B
HOH
226
2
HOH
HOH
189
B
HOH
228
2
HOH
HOH
190
B
HOH
229
2
HOH
HOH
191
B
HOH
231
2
HOH
HOH
192
B
HOH
232
2
HOH
HOH
193
B
HOH
233
2
HOH
HOH
194
B
HOH
235
2
HOH
HOH
195
B
HOH
237
2
HOH
HOH
196
B
HOH
239
2
HOH
HOH
197
B
HOH
240
2
HOH
HOH
198
B
HOH
241
2
HOH
HOH
199
B
HOH
242
2
HOH
HOH
200
B
n
1
1
A
n
2
2
A
ARG
3
n
3
ARG
3
A
VAL
4
n
4
VAL
4
A
PRO
5
n
5
PRO
5
A
LEU
6
n
6
LEU
6
A
THR
7
n
7
THR
7
A
ALA
8
n
8
ALA
8
A
GLU
9
n
9
GLU
9
A
GLU
10
n
10
GLU
10
A
LEU
11
n
11
LEU
11
A
GLU
12
n
12
GLU
12
A
ARG
13
n
13
ARG
13
A
GLY
14
n
14
GLY
14
A
GLN
15
n
15
GLN
15
A
ARG
16
n
16
ARG
16
A
LEU
17
n
17
LEU
17
A
GLY
18
n
18
GLY
18
A
GLU
19
n
19
GLU
19
A
LEU
20
n
20
LEU
20
A
LEU
21
n
21
LEU
21
A
ARG
22
n
22
ARG
22
A
SER
23
n
23
SER
23
A
ALA
24
n
24
ALA
24
A
ARG
25
n
25
ARG
25
A
GLY
26
n
26
GLY
26
A
ASP
27
n
27
ASP
27
A
MSE
28
n
28
MSE
28
A
SER
29
n
29
SER
29
A
MSE
30
n
30
MSE
30
A
VAL
31
n
31
VAL
31
A
THR
32
n
32
THR
32
A
VAL
33
n
33
VAL
33
A
ALA
34
n
34
ALA
34
A
PHE
35
n
35
PHE
35
A
ASP
36
n
36
ASP
36
A
ALA
37
n
37
ALA
37
A
GLY
38
n
38
GLY
38
A
ILE
39
n
39
ILE
39
A
SER
40
n
40
SER
40
A
VAL
41
n
41
VAL
41
A
GLU
42
n
42
GLU
42
A
THR
43
n
43
THR
43
A
LEU
44
n
44
LEU
44
A
ARG
45
n
45
ARG
45
A
LYS
46
n
46
LYS
46
A
ILE
47
n
47
ILE
47
A
GLU
48
n
48
GLU
48
A
THR
49
n
49
THR
49
A
GLY
50
n
50
GLY
50
A
ARG
51
n
51
ARG
51
A
ILE
52
n
52
ILE
52
A
ALA
53
n
53
ALA
53
A
THR
54
n
54
THR
54
A
PRO
55
n
55
PRO
55
A
ALA
56
n
56
ALA
56
A
PHE
57
n
57
PHE
57
A
PHE
58
n
58
PHE
58
A
THR
59
n
59
THR
59
A
ILE
60
n
60
ILE
60
A
ALA
61
n
61
ALA
61
A
ALA
62
n
62
ALA
62
A
VAL
63
n
63
VAL
63
A
ALA
64
n
64
ALA
64
A
ARG
65
n
65
ARG
65
A
VAL
66
n
66
VAL
66
A
LEU
67
n
67
LEU
67
A
ASP
68
n
68
ASP
68
A
LEU
69
n
69
LEU
69
A
SER
70
n
70
SER
70
A
LEU
71
n
71
LEU
71
A
ASP
72
n
72
ASP
72
A
ASP
73
n
73
ASP
73
A
VAL
74
n
74
VAL
74
A
ALA
75
n
75
ALA
75
A
ALA
76
n
76
ALA
76
A
VAL
77
n
77
VAL
77
A
VAL
78
n
78
VAL
78
A
THR
79
n
79
THR
79
A
PHE
80
n
80
PHE
80
A
GLY
81
n
81
GLY
81
A
PRO
82
n
82
PRO
82
A
VAL
83
n
83
VAL
83
A
SER
84
n
84
SER
84
A
n
85
85
A
n
86
86
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
PRO
5
n
5
PRO
5
B
LEU
6
n
6
LEU
6
B
THR
7
n
7
THR
7
B
ALA
8
n
8
ALA
8
B
GLU
9
n
9
GLU
9
B
GLU
10
n
10
GLU
10
B
LEU
11
n
11
LEU
11
B
GLU
12
n
12
GLU
12
B
ARG
13
n
13
ARG
13
B
GLY
14
n
14
GLY
14
B
GLN
15
n
15
GLN
15
B
ARG
16
n
16
ARG
16
B
LEU
17
n
17
LEU
17
B
GLY
18
n
18
GLY
18
B
GLU
19
n
19
GLU
19
B
LEU
20
n
20
LEU
20
B
LEU
21
n
21
LEU
21
B
ARG
22
n
22
ARG
22
B
SER
23
n
23
SER
23
B
ALA
24
n
24
ALA
24
B
ARG
25
n
25
ARG
25
B
GLY
26
n
26
GLY
26
B
ASP
27
n
27
ASP
27
B
MSE
28
n
28
MSE
28
B
SER
29
n
29
SER
29
B
MSE
30
n
30
MSE
30
B
VAL
31
n
31
VAL
31
B
THR
32
n
32
THR
32
B
VAL
33
n
33
VAL
33
B
ALA
34
n
34
ALA
34
B
PHE
35
n
35
PHE
35
B
ASP
36
n
36
ASP
36
B
ALA
37
n
37
ALA
37
B
GLY
38
n
38
GLY
38
B
ILE
39
n
39
ILE
39
B
SER
40
n
40
SER
40
B
VAL
41
n
41
VAL
41
B
GLU
42
n
42
GLU
42
B
THR
43
n
43
THR
43
B
LEU
44
n
44
LEU
44
B
ARG
45
n
45
ARG
45
B
LYS
46
n
46
LYS
46
B
ILE
47
n
47
ILE
47
B
GLU
48
n
48
GLU
48
B
THR
49
n
49
THR
49
B
GLY
50
n
50
GLY
50
B
ARG
51
n
51
ARG
51
B
ILE
52
n
52
ILE
52
B
ALA
53
n
53
ALA
53
B
THR
54
n
54
THR
54
B
PRO
55
n
55
PRO
55
B
ALA
56
n
56
ALA
56
B
PHE
57
n
57
PHE
57
B
PHE
58
n
58
PHE
58
B
THR
59
n
59
THR
59
B
ILE
60
n
60
ILE
60
B
ALA
61
n
61
ALA
61
B
ALA
62
n
62
ALA
62
B
VAL
63
n
63
VAL
63
B
ALA
64
n
64
ALA
64
B
ARG
65
n
65
ARG
65
B
VAL
66
n
66
VAL
66
B
LEU
67
n
67
LEU
67
B
ASP
68
n
68
ASP
68
B
LEU
69
n
69
LEU
69
B
SER
70
n
70
SER
70
B
LEU
71
n
71
LEU
71
B
ASP
72
n
72
ASP
72
B
ASP
73
n
73
ASP
73
B
VAL
74
n
74
VAL
74
B
ALA
75
n
75
ALA
75
B
ALA
76
n
76
ALA
76
B
VAL
77
n
77
VAL
77
B
VAL
78
n
78
VAL
78
B
THR
79
n
79
THR
79
B
PHE
80
n
80
PHE
80
B
GLY
81
n
81
GLY
81
B
PRO
82
n
82
PRO
82
B
VAL
83
n
83
VAL
83
B
SER
84
n
84
SER
84
B
n
85
85
B
n
86
86
B
11.8834
4.3788
0.1201
5.1460
0.2176
4.1384
-0.3670
0.4659
-0.1534
-0.2525
0.5721
0.1224
0.4977
-0.3695
-0.2050
0.0340
-0.0271
-0.0136
0.0419
0.0763
0.0253
refined
21.1330
10.1937
12.4298
X-RAY DIFFRACTION
3.9230
-0.1091
2.6384
4.6712
1.7290
3.8100
-0.1903
-0.7107
0.0910
0.4441
0.2196
-0.0906
0.0186
0.1626
-0.0293
0.0624
0.0871
-0.0205
0.1668
-0.0758
0.0959
refined
27.6051
23.3422
22.4451
X-RAY DIFFRACTION
5.3782
0.2707
1.0128
3.6917
-0.4122
4.0767
-0.2661
-0.3284
-0.1966
-0.0051
0.3130
0.2200
-0.0579
-0.3606
-0.0469
-0.0148
0.0363
0.0041
0.0059
0.0057
0.0327
refined
21.5655
19.7744
14.3492
X-RAY DIFFRACTION
20.5536
-4.1501
-6.1608
14.2100
5.5599
18.4082
-0.2935
-0.5037
0.5318
-0.2870
0.4571
-0.3613
-0.7626
1.1322
-0.1636
-0.0071
-0.0420
-0.0055
0.0337
-0.0724
0.0800
refined
33.1500
25.6351
12.5909
X-RAY DIFFRACTION
9.4455
-2.4016
-0.7717
5.0175
-4.6338
5.3567
0.0793
0.5217
-0.8651
-1.3337
0.6401
0.5873
0.9295
-0.0654
-0.7194
0.0484
-0.0435
-0.1140
-0.0771
-0.0295
-0.0274
refined
26.4803
12.5559
1.7203
X-RAY DIFFRACTION
21.7461
-9.8211
-20.6638
24.7229
27.6661
53.0832
-0.7092
-0.8410
1.5942
2.0981
-0.2343
0.4488
0.9211
-0.9312
0.9436
0.1417
0.0246
-0.0521
-0.3152
-0.1179
0.0743
refined
15.4811
34.2576
5.0009
X-RAY DIFFRACTION
1.8909
4.3594
0.7928
11.2486
1.0748
0.8052
0.1451
0.8743
0.1793
-0.2452
-0.2335
0.0884
-0.0492
-0.3934
0.0885
0.1263
-0.1523
-0.0038
0.1265
0.0043
0.0366
refined
15.9433
19.6610
-9.3880
X-RAY DIFFRACTION
6.1278
1.1693
-3.1218
14.6548
1.8786
6.5559
-0.1718
0.3991
0.4572
-0.5104
0.1985
0.5589
-0.0209
-0.8394
-0.0267
0.0300
-0.0462
-0.0427
0.0691
0.0398
0.0593
refined
9.3295
23.8472
-2.1450
X-RAY DIFFRACTION
3.8119
1.5747
0.8577
3.3662
0.0126
8.8963
-0.3155
0.3299
0.1821
-0.2359
0.2890
-0.0803
-0.3126
0.1256
0.0265
0.0598
-0.0714
-0.0262
-0.0258
0.0207
0.0276
refined
22.8076
22.0786
0.3762
X-RAY DIFFRACTION
34.9127
18.7132
-15.9710
43.2700
-47.3651
195.8622
0.5118
0.7823
0.7543
0.1281
0.4117
0.8303
0.0521
2.9189
-0.9236
-0.0012
0.0597
-0.0954
-0.1423
-0.0252
0.1449
refined
25.4008
36.6321
0.0545
X-RAY DIFFRACTION
A
3
A
3
A
23
A
23
X-RAY DIFFRACTION
1
A
24
A
24
A
46
A
46
X-RAY DIFFRACTION
2
A
47
A
47
A
64
A
64
X-RAY DIFFRACTION
3
A
65
A
65
A
69
A
69
X-RAY DIFFRACTION
4
A
70
A
70
A
84
A
84
X-RAY DIFFRACTION
5
B
5
B
5
B
19
B
19
X-RAY DIFFRACTION
6
B
20
B
20
B
39
B
39
X-RAY DIFFRACTION
7
B
40
B
40
B
52
B
52
X-RAY DIFFRACTION
8
B
53
B
53
B
77
B
77
X-RAY DIFFRACTION
9
B
78
B
78
B
84
B
84
X-RAY DIFFRACTION
10
author_and_software_defined_assembly
PISA
2
dimeric
1720
-15
9180
A
MSE
28
SELENOMETHIONINE
A
MSE
28
MET
A
MSE
30
SELENOMETHIONINE
A
MSE
30
MET
B
MSE
28
SELENOMETHIONINE
B
MSE
28
MET
B
MSE
30
SELENOMETHIONINE
B
MSE
30
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
MSE
1
A
MSE
1
1
Y
1
A
VAL
2
A
VAL
2
1
Y
1
A
THR
85
A
THR
85
1
Y
1
A
SER
86
A
SER
86
1
Y
1
B
MSE
1
B
MSE
1
1
Y
1
B
VAL
2
B
VAL
2
1
Y
1
B
ARG
3
B
ARG
3
1
Y
1
B
VAL
4
B
VAL
4
1
Y
1
B
THR
85
B
THR
85
1
Y
1
B
SER
86
B
SER
86
1
Y
1
A
A
OE2
O
GLU
HOH
19
177
2.12
A
1
B
B
O
O
HOH
HOH
141
196
2.15
1
A
A
PRO
VAL
82
83
-149.61
1
A
B
CG2
O
THR
HOH
79
155
2.19
1_555
4_555
30.802
1.36
0.00
0.00
0.50
0.00
-1.86
0.959
0.954
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23864
0.20353
0.20528
1.70
40.93
927
17299
5.1
99.70
5.256
0.091
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0
SAD
0.127
0.121
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.70
40.93
241
1449
0
0
1208
0.018
0.022
1245
1.740
1.986
1690
5.343
5.000
166
29.711
21.600
50
15.665
15.000
214
16.259
15.000
17
0.126
0.200
212
0.008
0.020
913
0.252
0.200
715
0.315
0.200
901
0.175
0.200
177
0.244
0.200
69
0.184
0.200
29
1.689
1.500
831
1.747
2.000
1308
3.447
3.000
444
4.541
4.500
379
0.38
0.303
1.745
77
1193
20
96.58
30.8
1.7
50.0
2OFY
18284
18279
-3.0
0.055
1
56
8.4
99.7
0.407
1.70
1.76
2.8
1770
1
6.0
98.7
refinement
REFMAC
5.2.0005
data collection
HKL-3000
data reduction
HKL-3000
data scaling
HKL-3000
phasing
HKL-3000
phasing
SHELXD
model building
SHELXE
phasing
MLPHARE
phasing
DM
phasing
SOLVE
phasing
RESOLVE
model building
Coot
model building
O
model building
ARP/wARP
phasing
CCP4
Crystal structure of putative XRE-family transcriptional regulator from Rhodococcus sp.
1
N
N
1
N
N
2
N
N
2
N
N
A
THR
7
A
THR
7
HELX_P
A
GLY
26
A
GLY
26
1
1
20
A
SER
29
A
SER
29
HELX_P
A
GLY
38
A
GLY
38
1
2
10
A
SER
40
A
SER
40
HELX_P
A
THR
49
A
THR
49
1
3
10
A
ALA
56
A
ALA
56
HELX_P
A
LEU
67
A
LEU
67
1
4
12
A
SER
70
A
SER
70
HELX_P
A
ALA
76
A
ALA
76
1
5
7
B
THR
7
B
THR
7
HELX_P
B
GLY
26
B
GLY
26
1
6
20
B
SER
29
B
SER
29
HELX_P
B
GLY
38
B
GLY
38
1
7
10
B
SER
40
B
SER
40
HELX_P
B
THR
49
B
THR
49
1
8
10
B
ALA
56
B
ALA
56
HELX_P
B
ASP
68
B
ASP
68
1
9
13
B
SER
70
B
SER
70
HELX_P
B
GLY
81
B
GLY
81
1
10
12
covale
1.325
both
A
ASP
27
A
C
ASP
27
1_555
A
MSE
28
A
N
MSE
28
1_555
covale
1.331
both
A
MSE
28
A
C
MSE
28
1_555
A
SER
29
A
N
SER
29
1_555
covale
1.330
both
A
SER
29
A
C
SER
29
1_555
A
MSE
30
A
N
MSE
30
1_555
covale
1.331
both
A
MSE
30
A
C
MSE
30
1_555
A
VAL
31
A
N
VAL
31
1_555
covale
1.334
both
B
ASP
27
B
C
ASP
27
1_555
B
MSE
28
B
N
MSE
28
1_555
covale
1.328
both
B
MSE
28
B
C
MSE
28
1_555
B
SER
29
B
N
SER
29
1_555
covale
1.327
both
B
SER
29
B
C
SER
29
1_555
B
MSE
30
B
N
MSE
30
1_555
covale
1.321
both
B
MSE
30
B
C
MSE
30
1_555
B
VAL
31
B
N
VAL
31
1_555
TRANSCRIPTION
TRANSCRIPTION REGULATOR, XRE-FAMILY, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, TRANSCRIPTION
A
VAL
83
A
VAL
83
1
A
SER
84
A
SER
84
21.07
B
VAL
83
B
VAL
83
1
B
SER
84
B
SER
84
6.10
Q0S9B8_RHOSR
UNP
1
1
Q0S9B8
MVRVPLTAEELERGQRLGELLRSARGDMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVVTF
GPVSTS
1
86
2OFY
1
86
Q0S9B8
A
1
1
86
1
86
2OFY
1
86
Q0S9B8
B
1
1
86
1
MET
modified residue
MSE
1
2OFY
A
Q0S9B8
UNP
1
1
1
MET
modified residue
MSE
28
2OFY
A
Q0S9B8
UNP
28
28
1
MET
modified residue
MSE
30
2OFY
A
Q0S9B8
UNP
30
30
2
MET
modified residue
MSE
1
2OFY
B
Q0S9B8
UNP
1
1
2
MET
modified residue
MSE
28
2OFY
B
Q0S9B8
UNP
28
28
2
MET
modified residue
MSE
30
2OFY
B
Q0S9B8
UNP
30
30
19
P 21 21 21