0.010922
0.006306
0.000000
0.000000
0.012611
0.000000
0.000000
0.000000
0.021739
0.000000
0.000000
0.000000
Phillips Jr., G.N.
Schweers, R.L.
Soman, J.
Olson, J.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
91.560
91.560
46.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H32 Fe N4 O4
616.487
PROTOPORPHYRIN IX CONTAINING FE
HEME
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
C
N
124
N
C
N
125
N
C
N
126
N
C
Y
127
N
C
Y
128
N
C
Y
129
N
C
Y
130
N
C
N
131
N
C
N
132
N
C
N
133
N
C
N
134
N
C
N
135
N
O
N
136
N
O
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
C
Y
144
N
C
Y
145
N
C
Y
146
N
C
Y
147
N
C
N
148
N
C
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
C
N
158
N
C
N
159
N
O
N
160
N
O
Y
161
N
N
N
162
N
N
Y
163
N
N
N
164
N
N
N
165
N
FE
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
C
Y
203
N
C
Y
204
N
N
Y
205
N
C
Y
206
N
C
Y
207
N
N
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
N
N
223
S
C
N
224
N
C
N
225
N
O
N
226
S
C
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
N
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
C
N
297
N
S
N
298
N
C
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
N
339
N
C
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
S
N
366
N
O
N
367
N
O
N
368
N
O
N
369
N
O
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
R
C
N
375
N
O
N
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
N
N
388
S
C
N
389
N
C
N
390
N
O
N
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
N
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
N
425
N
O
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
N
N
439
S
C
N
440
N
C
N
441
N
O
N
442
N
C
N
443
N
C
N
444
N
C
N
445
N
O
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
Y
128
N
doub
Y
129
N
sing
Y
130
N
sing
N
131
N
sing
Y
132
N
doub
N
133
N
sing
Y
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
Y
160
N
sing
Y
161
N
sing
Y
162
N
doub
N
163
N
sing
Y
164
N
sing
N
165
N
sing
Y
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
Y
209
N
sing
Y
210
N
doub
Y
211
N
doub
N
212
N
sing
Y
213
N
sing
N
214
N
sing
Y
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
Y
390
N
doub
Y
391
N
sing
Y
392
N
sing
N
393
N
sing
Y
394
N
doub
Y
395
N
sing
Y
396
N
sing
N
397
N
sing
Y
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
Y
418
N
doub
Y
419
N
sing
Y
420
N
sing
N
421
N
sing
Y
422
N
doub
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
doub
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
UK
Iubmb Life
1521-6543
59
552
562
10.1080/15216540701230495
17701550
Ligand pathways in myoglobin: A review of trp cavity mutations.
2007
10.2210/pdb2ohb/pdb
pdb_00002ohb
277
1
IMAGE PLATE
1998-06-10
RIGAKU RAXIS IIC
FILTER
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
SIEMENS
17438.215
Myoglobin
1
man
polymer
96.063
SULFATE ION
2
syn
non-polymer
616.487
PROTOPORPHYRIN IX CONTAINING FE
1
syn
non-polymer
18.015
water
111
nat
water
no
no
MVLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKK
GHHEAELKPLAQSHATKHKIPIKYLEFWSEAIIHVLHSRHPGNFGADAQGAMNKALELFRKDIAAKYKELGYQG
MVLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKK
GHHEAELKPLAQSHATKHKIPIKYLEFWSEAIIHVLHSRHPGNFGADAQGAMNKALELFRKDIAAKYKELGYQG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sperm whale
Physeter
Escherichia
sample
MB
9755
Physeter catodon
562
Escherichia coli
Phage-resistent TB1
plasmid
pUC19
1
3.19
61.45
VAPOR DIFFUSION, HANGING DROP
9.0
PROTEIN SOLUTION (20 MG/ML PROTEIN, 0.020 M TRIS-HCL, pH 9.0), MIXED IN A 1:1 RATIO WITH THE WELL SOLUTION (2.8 M AMMONIUM SULPHATE, 0.050 M TRIS-HCL, pH 9.0), vapor diffusion, hanging drop, temperature 293K, VAPOR DIFFUSION, HANGING DROP
293
software
database_2
struct_conn
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Database references
Derived calculations
Data collection
1
0
2007-01-23
1
1
2008-05-01
1
2
2011-07-13
1
3
2017-10-18
1
4
2021-10-20
1
5
2023-12-27
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2007-01-09
REL
REL
SO4
SULFATE ION
HEM
PROTOPORPHYRIN IX CONTAINING FE
HOH
water
SO4
200
2
SO4
SO4
200
A
SO4
201
2
SO4
SO4
201
A
HEM
154
3
HEM
HEM
154
A
MTO
155
4
HOH
HOH
202
A
TIP
1
4
HOH
HOH
203
A
TIP
2
4
HOH
HOH
204
A
TIP
3
4
HOH
HOH
205
A
TIP
4
4
HOH
HOH
206
A
TIP
5
4
HOH
HOH
207
A
TIP
6
4
HOH
HOH
208
A
TIP
7
4
HOH
HOH
209
A
TIP
8
4
HOH
HOH
210
A
TIP
9
4
HOH
HOH
211
A
TIP
10
4
HOH
HOH
212
A
TIP
11
4
HOH
HOH
213
A
TIP
12
4
HOH
HOH
214
A
TIP
13
4
HOH
HOH
215
A
TIP
14
4
HOH
HOH
216
A
TIP
15
4
HOH
HOH
217
A
TIP
16
4
HOH
HOH
218
A
TIP
17
4
HOH
HOH
219
A
TIP
18
4
HOH
HOH
220
A
TIP
19
4
HOH
HOH
221
A
TIP
20
4
HOH
HOH
222
A
TIP
21
4
HOH
HOH
223
A
TIP
22
4
HOH
HOH
224
A
TIP
23
4
HOH
HOH
225
A
TIP
24
4
HOH
HOH
226
A
TIP
25
4
HOH
HOH
227
A
TIP
26
4
HOH
HOH
228
A
TIP
27
4
HOH
HOH
229
A
TIP
28
4
HOH
HOH
230
A
TIP
29
4
HOH
HOH
231
A
TIP
30
4
HOH
HOH
232
A
TIP
31
4
HOH
HOH
233
A
TIP
32
4
HOH
HOH
234
A
TIP
33
4
HOH
HOH
235
A
TIP
34
4
HOH
HOH
236
A
TIP
35
4
HOH
HOH
237
A
TIP
36
4
HOH
HOH
238
A
TIP
37
4
HOH
HOH
239
A
TIP
38
4
HOH
HOH
240
A
TIP
39
4
HOH
HOH
241
A
TIP
40
4
HOH
HOH
242
A
TIP
41
4
HOH
HOH
243
A
TIP
42
4
HOH
HOH
244
A
TIP
43
4
HOH
HOH
245
A
TIP
44
4
HOH
HOH
246
A
TIP
45
4
HOH
HOH
247
A
TIP
46
4
HOH
HOH
248
A
TIP
47
4
HOH
HOH
249
A
TIP
48
4
HOH
HOH
250
A
TIP
49
4
HOH
HOH
251
A
TIP
50
4
HOH
HOH
252
A
TIP
51
4
HOH
HOH
253
A
TIP
52
4
HOH
HOH
254
A
TIP
53
4
HOH
HOH
255
A
TIP
54
4
HOH
HOH
256
A
TIP
55
4
HOH
HOH
257
A
TIP
56
4
HOH
HOH
258
A
TIP
57
4
HOH
HOH
259
A
TIP
58
4
HOH
HOH
260
A
TIP
59
4
HOH
HOH
261
A
TIP
60
4
HOH
HOH
262
A
TIP
61
4
HOH
HOH
263
A
TIP
62
4
HOH
HOH
264
A
TIP
63
4
HOH
HOH
265
A
TIP
64
4
HOH
HOH
266
A
TIP
65
4
HOH
HOH
267
A
TIP
66
4
HOH
HOH
268
A
TIP
67
4
HOH
HOH
269
A
TIP
68
4
HOH
HOH
270
A
TIP
69
4
HOH
HOH
271
A
TIP
70
4
HOH
HOH
272
A
TIP
71
4
HOH
HOH
273
A
TIP
72
4
HOH
HOH
274
A
TIP
73
4
HOH
HOH
275
A
TIP
74
4
HOH
HOH
276
A
TIP
75
4
HOH
HOH
277
A
TIP
76
4
HOH
HOH
278
A
TIP
77
4
HOH
HOH
279
A
TIP
78
4
HOH
HOH
280
A
TIP
79
4
HOH
HOH
281
A
TIP
80
4
HOH
HOH
282
A
TIP
81
4
HOH
HOH
283
A
TIP
82
4
HOH
HOH
284
A
TIP
83
4
HOH
HOH
285
A
TIP
84
4
HOH
HOH
286
A
TIP
85
4
HOH
HOH
287
A
TIP
86
4
HOH
HOH
288
A
TIP
87
4
HOH
HOH
289
A
TIP
88
4
HOH
HOH
290
A
TIP
89
4
HOH
HOH
291
A
TIP
90
4
HOH
HOH
292
A
TIP
91
4
HOH
HOH
293
A
TIP
92
4
HOH
HOH
294
A
TIP
93
4
HOH
HOH
295
A
TIP
94
4
HOH
HOH
296
A
TIP
95
4
HOH
HOH
297
A
TIP
96
4
HOH
HOH
298
A
TIP
97
4
HOH
HOH
299
A
TIP
98
4
HOH
HOH
300
A
TIP
99
4
HOH
HOH
301
A
TIP
100
4
HOH
HOH
302
A
TIP
101
4
HOH
HOH
303
A
TIP
102
4
HOH
HOH
304
A
TIP
103
4
HOH
HOH
305
A
TIP
104
4
HOH
HOH
306
A
TIP
105
4
HOH
HOH
307
A
TIP
106
4
HOH
HOH
308
A
TIP
107
4
HOH
HOH
309
A
TIP
108
4
HOH
HOH
310
A
TIP
109
4
HOH
HOH
311
A
TIP
110
4
HOH
HOH
312
A
MET
0
n
1
MET
0
A
VAL
1
n
2
VAL
1
A
LEU
2
n
3
LEU
2
A
SER
3
n
4
SER
3
A
GLU
4
n
5
GLU
4
A
GLY
5
n
6
GLY
5
A
GLU
6
n
7
GLU
6
A
TRP
7
n
8
TRP
7
A
GLN
8
n
9
GLN
8
A
LEU
9
n
10
LEU
9
A
VAL
10
n
11
VAL
10
A
LEU
11
n
12
LEU
11
A
HIS
12
n
13
HIS
12
A
VAL
13
n
14
VAL
13
A
TRP
14
n
15
TRP
14
A
ALA
15
n
16
ALA
15
A
LYS
16
n
17
LYS
16
A
VAL
17
n
18
VAL
17
A
GLU
18
n
19
GLU
18
A
ALA
19
n
20
ALA
19
A
ASP
20
n
21
ASP
20
A
VAL
21
n
22
VAL
21
A
ALA
22
n
23
ALA
22
A
GLY
23
n
24
GLY
23
A
HIS
24
n
25
HIS
24
A
GLY
25
n
26
GLY
25
A
GLN
26
n
27
GLN
26
A
ASP
27
n
28
ASP
27
A
ILE
28
n
29
ILE
28
A
LEU
29
n
30
LEU
29
A
ILE
30
n
31
ILE
30
A
ARG
31
n
32
ARG
31
A
LEU
32
n
33
LEU
32
A
PHE
33
n
34
PHE
33
A
LYS
34
n
35
LYS
34
A
SER
35
n
36
SER
35
A
HIS
36
n
37
HIS
36
A
PRO
37
n
38
PRO
37
A
GLU
38
n
39
GLU
38
A
THR
39
n
40
THR
39
A
LEU
40
n
41
LEU
40
A
GLU
41
n
42
GLU
41
A
LYS
42
n
43
LYS
42
A
PHE
43
n
44
PHE
43
A
ASP
44
n
45
ASP
44
A
ARG
45
n
46
ARG
45
A
PHE
46
n
47
PHE
46
A
LYS
47
n
48
LYS
47
A
HIS
48
n
49
HIS
48
A
LEU
49
n
50
LEU
49
A
LYS
50
n
51
LYS
50
A
THR
51
n
52
THR
51
A
GLU
52
n
53
GLU
52
A
ALA
53
n
54
ALA
53
A
GLU
54
n
55
GLU
54
A
MET
55
n
56
MET
55
A
LYS
56
n
57
LYS
56
A
ALA
57
n
58
ALA
57
A
SER
58
n
59
SER
58
A
GLU
59
n
60
GLU
59
A
ASP
60
n
61
ASP
60
A
LEU
61
n
62
LEU
61
A
LYS
62
n
63
LYS
62
A
LYS
63
n
64
LYS
63
A
HIS
64
n
65
HIS
64
A
GLY
65
n
66
GLY
65
A
VAL
66
n
67
VAL
66
A
THR
67
n
68
THR
67
A
VAL
68
n
69
VAL
68
A
LEU
69
n
70
LEU
69
A
THR
70
n
71
THR
70
A
ALA
71
n
72
ALA
71
A
LEU
72
n
73
LEU
72
A
GLY
73
n
74
GLY
73
A
ALA
74
n
75
ALA
74
A
ILE
75
n
76
ILE
75
A
LEU
76
n
77
LEU
76
A
LYS
77
n
78
LYS
77
A
LYS
78
n
79
LYS
78
A
LYS
79
n
80
LYS
79
A
GLY
80
n
81
GLY
80
A
HIS
81
n
82
HIS
81
A
HIS
82
n
83
HIS
82
A
GLU
83
n
84
GLU
83
A
ALA
84
n
85
ALA
84
A
GLU
85
n
86
GLU
85
A
LEU
86
n
87
LEU
86
A
LYS
87
n
88
LYS
87
A
PRO
88
n
89
PRO
88
A
LEU
89
n
90
LEU
89
A
ALA
90
n
91
ALA
90
A
GLN
91
n
92
GLN
91
A
SER
92
n
93
SER
92
A
HIS
93
n
94
HIS
93
A
ALA
94
n
95
ALA
94
A
THR
95
n
96
THR
95
A
LYS
96
n
97
LYS
96
A
HIS
97
n
98
HIS
97
A
LYS
98
n
99
LYS
98
A
ILE
99
n
100
ILE
99
A
PRO
100
n
101
PRO
100
A
ILE
101
n
102
ILE
101
A
LYS
102
n
103
LYS
102
A
TYR
103
n
104
TYR
103
A
LEU
104
n
105
LEU
104
A
GLU
105
n
106
GLU
105
A
PHE
106
n
107
PHE
106
A
TRP
107
n
108
TRP
107
A
SER
108
n
109
SER
108
A
GLU
109
n
110
GLU
109
A
ALA
110
n
111
ALA
110
A
ILE
111
n
112
ILE
111
A
ILE
112
n
113
ILE
112
A
HIS
113
n
114
HIS
113
A
VAL
114
n
115
VAL
114
A
LEU
115
n
116
LEU
115
A
HIS
116
n
117
HIS
116
A
SER
117
n
118
SER
117
A
ARG
118
n
119
ARG
118
A
HIS
119
n
120
HIS
119
A
PRO
120
n
121
PRO
120
A
GLY
121
n
122
GLY
121
A
ASN
122
n
123
ASN
122
A
PHE
123
n
124
PHE
123
A
GLY
124
n
125
GLY
124
A
ALA
125
n
126
ALA
125
A
ASP
126
n
127
ASP
126
A
ALA
127
n
128
ALA
127
A
GLN
128
n
129
GLN
128
A
GLY
129
n
130
GLY
129
A
ALA
130
n
131
ALA
130
A
MET
131
n
132
MET
131
A
ASN
132
n
133
ASN
132
A
LYS
133
n
134
LYS
133
A
ALA
134
n
135
ALA
134
A
LEU
135
n
136
LEU
135
A
GLU
136
n
137
GLU
136
A
LEU
137
n
138
LEU
137
A
PHE
138
n
139
PHE
138
A
ARG
139
n
140
ARG
139
A
LYS
140
n
141
LYS
140
A
ASP
141
n
142
ASP
141
A
ILE
142
n
143
ILE
142
A
ALA
143
n
144
ALA
143
A
ALA
144
n
145
ALA
144
A
LYS
145
n
146
LYS
145
A
TYR
146
n
147
TYR
146
A
LYS
147
n
148
LYS
147
A
GLU
148
n
149
GLU
148
A
LEU
149
n
150
LEU
149
A
GLY
150
n
151
GLY
150
A
TYR
151
n
152
TYR
151
A
GLN
152
n
153
GLN
152
A
GLY
153
n
154
GLY
153
A
author_defined_assembly
1
monomeric
A
HIS
93
A
NE2
HIS
94
1_555
A
HEM
154
D
FE
HEM
1_555
A
HEM
154
D
NA
HEM
1_555
90.8
A
HIS
93
A
NE2
HIS
94
1_555
A
HEM
154
D
FE
HEM
1_555
A
HEM
154
D
NB
HEM
1_555
90.8
A
HEM
154
D
NA
HEM
1_555
A
HEM
154
D
FE
HEM
1_555
A
HEM
154
D
NB
HEM
1_555
90.1
A
HIS
93
A
NE2
HIS
94
1_555
A
HEM
154
D
FE
HEM
1_555
A
HEM
154
D
NC
HEM
1_555
94.1
A
HEM
154
D
NA
HEM
1_555
A
HEM
154
D
FE
HEM
1_555
A
HEM
154
D
NC
HEM
1_555
175.1
A
HEM
154
D
NB
HEM
1_555
A
HEM
154
D
FE
HEM
1_555
A
HEM
154
D
NC
HEM
1_555
89.7
A
HIS
93
A
NE2
HIS
94
1_555
A
HEM
154
D
FE
HEM
1_555
A
HEM
154
D
ND
HEM
1_555
92.4
A
HEM
154
D
NA
HEM
1_555
A
HEM
154
D
FE
HEM
1_555
A
HEM
154
D
ND
HEM
1_555
90.0
A
HEM
154
D
NB
HEM
1_555
A
HEM
154
D
FE
HEM
1_555
A
HEM
154
D
ND
HEM
1_555
176.8
A
HEM
154
D
NC
HEM
1_555
A
HEM
154
D
FE
HEM
1_555
A
HEM
154
D
ND
HEM
1_555
90.0
A
HIS
93
A
NE2
HIS
94
1_555
A
HEM
154
D
FE
HEM
1_555
A
HOH
202
E
O
HOH
1_555
174.6
A
HEM
154
D
NA
HEM
1_555
A
HEM
154
D
FE
HEM
1_555
A
HOH
202
E
O
HOH
1_555
93.5
A
HEM
154
D
NB
HEM
1_555
A
HEM
154
D
FE
HEM
1_555
A
HOH
202
E
O
HOH
1_555
92.4
A
HEM
154
D
NC
HEM
1_555
A
HEM
154
D
FE
HEM
1_555
A
HOH
202
E
O
HOH
1_555
81.6
A
HEM
154
D
ND
HEM
1_555
A
HEM
154
D
FE
HEM
1_555
A
HOH
202
E
O
HOH
1_555
84.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ASP
20
-152.56
70.87
1
A
GLN
152
-53.16
-81.16
protein_rep.param
protein.top
heme-ferric.param
heme-ferric.top
water_rep.param
water.top
ion.param
ion.top
73.64
22.34
7.23
0.10
1.54
0.00
0.10
0.00
-0.20
0.199
0.005
0.177
1.80
79.29
1738
20583
17614
9.9
85.6
1.00
0.50
random
1
THROUGHOUT
MOLECULAR REPLACEMENT
CNS bulk solvent model used
63.2324
0.370949
0.19
0.17
5.00
0.15
0.17
1.80
1.80
79.29
111
1395
53
0
1231
0.004
1.5
17.2
0.77
1.41
1.50
2.14
2.00
2.77
2.00
4.32
2.50
0.296
0.037
0.284
1.88
63
645
2540
708
8.9
27.9
0.223
0.018
0.242
1.98
146
1676
2535
1822
8.0
71.9
0.228
0.015
0.196
2.11
239
2135
2566
2374
10.1
92.5
0.182
0.011
0.172
2.27
258
2226
2574
2484
10.4
96.5
0.205
0.013
0.168
2.50
248
2269
2567
2517
9.9
98.1
0.19
0.012
0.17
2.86
273
2269
2577
2542
10.7
98.6
0.207
0.013
0.174
3.60
246
2298
2581
2544
9.7
98.6
0.187
0.011
0.166
79.29
265
2358
2658
2623
10.1
98.7
18.0
1.80
79.29
2OHB
43
0
43
0
25
0
18358
18360
154847.73
0.320000
0.0
0.075
1.231
1
13.000
88.400
0.355
1.80
1.85
407
1.258
23.80
0.281
1.85
1.91
917
1.159
53.00
0.302
1.91
1.98
1468
1.115
86.90
0.26
1.98
2.06
1690
1.115
97.50
0.193
2.06
2.15
1711
1.103
99.80
0.159
2.15
2.27
1714
1.193
100.00
0.128
2.27
2.41
1747
1.206
100.00
0.107
2.41
2.60
1710
1.295
100.00
0.094
2.60
2.86
1744
1.309
100.00
0.076
2.86
3.27
1718
1.320
100.00
0.057
3.27
4.12
1758
1.327
99.90
0.037
4.12
100.00
1776
1.183
98.70
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
refinement
Axel T. Brunger
axel.brunger@yale.edu
1998
Fortran_77
http://cns.csb.yale.edu/v1.1/
CNS
package
1.1
data extraction
PDB
sw-help@rcsb.rutgers.edu
April. 3, 2006
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
2.000
Myoglobin cavity mutant I107W
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
SER
3
A
SER
4
HELX_P
A
GLU
18
A
GLU
19
1
1
16
A
ASP
20
A
ASP
21
HELX_P
A
HIS
36
A
HIS
37
1
2
17
A
PRO
37
A
PRO
38
HELX_P
A
PHE
43
A
PHE
44
5
3
7
A
THR
51
A
THR
52
HELX_P
A
SER
58
A
SER
59
1
4
8
A
SER
58
A
SER
59
HELX_P
A
LYS
77
A
LYS
78
1
5
20
A
HIS
82
A
HIS
83
HELX_P
A
LYS
96
A
LYS
97
1
6
15
A
PRO
100
A
PRO
101
HELX_P
A
HIS
119
A
HIS
120
1
7
20
A
PRO
120
A
PRO
121
HELX_P
A
PHE
123
A
PHE
124
5
8
4
A
GLY
124
A
GLY
125
HELX_P
A
GLY
150
A
GLY
151
1
9
27
metalc
2.112
A
HIS
93
A
NE2
HIS
94
1_555
A
HEM
154
D
FE
HEM
1_555
metalc
2.109
A
HEM
154
D
FE
HEM
1_555
A
HOH
202
E
O
HOH
1_555
OXYGEN STORAGE/TRANSPORT
MYOGLOBIN, LIGAND ENTRY AND EXIT PATHWAYS, OXYGEN STORAGE-TRANSPORT COMPLEX
MYG_PHYCA
UNP
1
1
P02185
VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKG
HHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG
1
153
2OHB
1
153
P02185
A
1
2
154
1
initiating methionine
MET
0
2OHB
A
P02185
UNP
1
1
ILE
engineered mutation
TRP
107
2OHB
A
P02185
UNP
107
108
1
ASP
conflict
ASN
122
2OHB
A
P02185
UNP
122
123
168
P 6