data_2OKZ # _entry.id 2OKZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OKZ pdb_00002okz 10.2210/pdb2okz/pdb RCSB RCSB041266 ? ? WWPDB D_1000041266 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-30 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-12-27 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 2OKZ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-01-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2OL9 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sawaya, M.R.' 1 'Sambashivan, S.' 2 'Eisenberg, D.' 3 # _citation.id primary _citation.title 'Atomic structures of amyloid cross-beta spines reveal varied steric zippers.' _citation.journal_abbrev Nature _citation.journal_volume 447 _citation.page_first 453 _citation.page_last 457 _citation.year 2007 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17468747 _citation.pdbx_database_id_DOI 10.1038/nature05695 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sawaya, M.R.' 1 ? primary 'Sambashivan, S.' 2 ? primary 'Nelson, R.' 3 ? primary 'Ivanova, M.I.' 4 ? primary 'Sievers, S.A.' 5 ? primary 'Apostol, M.I.' 6 ? primary 'Thompson, M.J.' 7 ? primary 'Balbirnie, M.' 8 ? primary 'Wiltzius, J.J.' 9 ? primary 'McFarlane, H.T.' 10 ? primary 'Madsen, A.O.' 11 ? primary 'Riekel, C.' 12 ? primary 'Eisenberg, D.' 13 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;peptide from Alzheimer's A-beta ; _entity.formula_weight 560.707 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'residues 35-40' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MVGGVV _entity_poly.pdbx_seq_one_letter_code_can MVGGVV _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 GLY n 1 4 GLY n 1 5 VAL n 1 6 VAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence corresponds to residues 35-40 of human A-beta peptide' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 VAL 6 6 6 VAL VAL A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 VAL 2 2 2 VAL VAL B . n B 1 3 GLY 3 3 3 GLY GLY B . n B 1 4 GLY 4 4 4 GLY GLY B . n B 1 5 VAL 5 5 5 VAL VAL B . n B 1 6 VAL 6 6 6 VAL VAL B . n # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 # _cell.length_a 15.148 _cell.length_b 9.576 _cell.length_c 23.732 _cell.angle_alpha 90.000 _cell.angle_beta 96.900 _cell.angle_gamma 90.000 _cell.entry_id 2OKZ _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 2OKZ _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 2OKZ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews ? _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.2 M CaCl2, 20% isopropanol, 0.1 M Na acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2005-07-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'channel-cut Si-111 monochromator and an ellipsoidal mirror' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.94660 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID13' _diffrn_source.pdbx_wavelength 0.94660 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID13 # _reflns.entry_id 2OKZ _reflns.d_resolution_high 1.800 _reflns.d_resolution_low 90.000 _reflns.number_obs 650 _reflns.pdbx_Rmerge_I_obs 0.158 _reflns.pdbx_netI_over_sigmaI 4.200 _reflns.pdbx_chi_squared 1.073 _reflns.pdbx_redundancy 2.900 _reflns.percent_possible_obs 95.300 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.number_all 650 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 26.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.94 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.447 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 1.082 _reflns_shell.pdbx_redundancy 2.60 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 123 _reflns_shell.percent_possible_all 89.80 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2OKZ _refine.ls_d_res_high 1.800 _refine.ls_d_res_low 23.560 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 93.100 _refine.ls_number_reflns_obs 648 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_R_work 0.213 _refine.ls_R_factor_R_free 0.267 _refine.ls_percent_reflns_R_free 5.400 _refine.ls_number_reflns_R_free 35 _refine.B_iso_mean 11.768 _refine.aniso_B[1][1] 0.680 _refine.aniso_B[2][2] -1.770 _refine.aniso_B[3][3] 1.040 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.240 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.950 _refine.correlation_coeff_Fo_to_Fc_free 0.925 _refine.pdbx_overall_ESU_R 0.198 _refine.pdbx_overall_ESU_R_Free 0.177 _refine.overall_SU_ML 0.078 _refine.overall_SU_B 2.396 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'MVGGVV from space group P1' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 76 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 76 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 23.560 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 74 0.017 0.023 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 40 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 98 1.685 2.057 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 102 0.633 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 10 4.554 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12 15.503 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 14 0.087 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 78 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 10 0.000 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 6 0.146 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 26 0.204 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 34 0.142 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 50 0.095 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 4 0.299 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 11 0.252 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 1 0.093 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 67 6.037 2.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 26 2.150 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 88 5.903 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 18 5.729 2.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 10 7.162 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 52.080 _refine_ls_shell.number_reflns_R_work 24 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.163 _refine_ls_shell.R_factor_R_free 0.138 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 1 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 25 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2OKZ _struct.title ;MVGGVV peptide derived from Alzheimer's A-beta ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OKZ _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' _struct_keywords.text 'steric zipper, PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2OKZ _struct_ref.pdbx_db_accession 2OKZ _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2OKZ A 1 ? 6 ? 2OKZ 1 ? 6 ? 1 6 2 1 2OKZ B 1 ? 6 ? 2OKZ 1 ? 6 ? 1 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A 1 3 B 1 2 A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'crystal symmetry operation' 2_555 -x,y+1/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4.7880000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 2 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_556 -x,y+1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 -2.8510874592 0.0000000000 1.0000000000 0.0000000000 4.7880000000 0.0000000000 0.0000000000 -1.0000000000 23.5601172387 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal GLY N N N N 1 GLY CA C N N 2 GLY C C N N 3 GLY O O N N 4 GLY OXT O N N 5 GLY H H N N 6 GLY H2 H N N 7 GLY HA2 H N N 8 GLY HA3 H N N 9 GLY HXT H N N 10 MET N N N N 11 MET CA C N S 12 MET C C N N 13 MET O O N N 14 MET CB C N N 15 MET CG C N N 16 MET SD S N N 17 MET CE C N N 18 MET OXT O N N 19 MET H H N N 20 MET H2 H N N 21 MET HA H N N 22 MET HB2 H N N 23 MET HB3 H N N 24 MET HG2 H N N 25 MET HG3 H N N 26 MET HE1 H N N 27 MET HE2 H N N 28 MET HE3 H N N 29 MET HXT H N N 30 VAL N N N N 31 VAL CA C N S 32 VAL C C N N 33 VAL O O N N 34 VAL CB C N N 35 VAL CG1 C N N 36 VAL CG2 C N N 37 VAL OXT O N N 38 VAL H H N N 39 VAL H2 H N N 40 VAL HA H N N 41 VAL HB H N N 42 VAL HG11 H N N 43 VAL HG12 H N N 44 VAL HG13 H N N 45 VAL HG21 H N N 46 VAL HG22 H N N 47 VAL HG23 H N N 48 VAL HXT H N N 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLY N CA sing N N 1 GLY N H sing N N 2 GLY N H2 sing N N 3 GLY CA C sing N N 4 GLY CA HA2 sing N N 5 GLY CA HA3 sing N N 6 GLY C O doub N N 7 GLY C OXT sing N N 8 GLY OXT HXT sing N N 9 MET N CA sing N N 10 MET N H sing N N 11 MET N H2 sing N N 12 MET CA C sing N N 13 MET CA CB sing N N 14 MET CA HA sing N N 15 MET C O doub N N 16 MET C OXT sing N N 17 MET CB CG sing N N 18 MET CB HB2 sing N N 19 MET CB HB3 sing N N 20 MET CG SD sing N N 21 MET CG HG2 sing N N 22 MET CG HG3 sing N N 23 MET SD CE sing N N 24 MET CE HE1 sing N N 25 MET CE HE2 sing N N 26 MET CE HE3 sing N N 27 MET OXT HXT sing N N 28 VAL N CA sing N N 29 VAL N H sing N N 30 VAL N H2 sing N N 31 VAL CA C sing N N 32 VAL CA CB sing N N 33 VAL CA HA sing N N 34 VAL C O doub N N 35 VAL C OXT sing N N 36 VAL CB CG1 sing N N 37 VAL CB CG2 sing N N 38 VAL CB HB sing N N 39 VAL CG1 HG11 sing N N 40 VAL CG1 HG12 sing N N 41 VAL CG1 HG13 sing N N 42 VAL CG2 HG21 sing N N 43 VAL CG2 HG22 sing N N 44 VAL CG2 HG23 sing N N 45 VAL OXT HXT sing N N 46 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'MVGGVV from space group P1' # _atom_sites.entry_id 2OKZ _atom_sites.fract_transf_matrix[1][1] 0.066015 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007990 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.104428 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.042445 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . MET A 1 1 ? 7.404 -0.773 -5.911 1.00 21.48 ? 1 MET A N 1 ATOM 2 C CA . MET A 1 1 ? 6.021 -0.284 -5.672 1.00 24.02 ? 1 MET A CA 1 ATOM 3 C C . MET A 1 1 ? 5.481 -1.007 -4.467 1.00 8.69 ? 1 MET A C 1 ATOM 4 O O . MET A 1 1 ? 5.648 -2.221 -4.335 1.00 17.20 ? 1 MET A O 1 ATOM 5 C CB . MET A 1 1 ? 5.111 -0.597 -6.844 1.00 19.41 ? 1 MET A CB 1 ATOM 6 C CG . MET A 1 1 ? 5.311 0.216 -8.048 1.00 30.39 ? 1 MET A CG 1 ATOM 7 S SD . MET A 1 1 ? 5.118 -0.854 -9.477 1.00 32.04 ? 1 MET A SD 1 ATOM 8 C CE . MET A 1 1 ? 6.638 -1.802 -9.418 1.00 34.96 ? 1 MET A CE 1 ATOM 9 N N . VAL A 1 2 ? 4.821 -0.251 -3.611 1.00 16.38 ? 2 VAL A N 1 ATOM 10 C CA . VAL A 1 2 ? 4.242 -0.792 -2.406 1.00 10.92 ? 2 VAL A CA 1 ATOM 11 C C . VAL A 1 2 ? 2.965 -0.047 -2.105 1.00 7.22 ? 2 VAL A C 1 ATOM 12 O O . VAL A 1 2 ? 2.929 1.185 -2.135 1.00 8.93 ? 2 VAL A O 1 ATOM 13 C CB . VAL A 1 2 ? 5.199 -0.636 -1.220 1.00 13.26 ? 2 VAL A CB 1 ATOM 14 C CG1 . VAL A 1 2 ? 4.505 -1.081 0.070 1.00 17.40 ? 2 VAL A CG1 1 ATOM 15 C CG2 . VAL A 1 2 ? 6.468 -1.472 -1.442 1.00 16.10 ? 2 VAL A CG2 1 ATOM 16 N N . GLY A 1 3 ? 1.929 -0.822 -1.798 1.00 16.42 ? 3 GLY A N 1 ATOM 17 C CA . GLY A 1 3 ? 0.655 -0.256 -1.384 1.00 12.58 ? 3 GLY A CA 1 ATOM 18 C C . GLY A 1 3 ? 0.144 -0.978 -0.142 1.00 15.52 ? 3 GLY A C 1 ATOM 19 O O . GLY A 1 3 ? 0.363 -2.214 0.037 1.00 16.55 ? 3 GLY A O 1 ATOM 20 N N . GLY A 1 4 ? -0.561 -0.209 0.697 1.00 18.54 ? 4 GLY A N 1 ATOM 21 C CA . GLY A 1 4 ? -1.207 -0.725 1.919 1.00 16.07 ? 4 GLY A CA 1 ATOM 22 C C . GLY A 1 4 ? -2.578 -0.101 2.162 1.00 15.53 ? 4 GLY A C 1 ATOM 23 O O . GLY A 1 4 ? -2.749 1.076 1.930 1.00 15.55 ? 4 GLY A O 1 ATOM 24 N N . VAL A 1 5 ? -3.548 -0.909 2.597 1.00 15.79 ? 5 VAL A N 1 ATOM 25 C CA . VAL A 1 5 ? -4.879 -0.425 3.004 1.00 19.25 ? 5 VAL A CA 1 ATOM 26 C C . VAL A 1 5 ? -5.300 -0.997 4.359 1.00 20.27 ? 5 VAL A C 1 ATOM 27 O O . VAL A 1 5 ? -5.214 -2.208 4.551 1.00 15.64 ? 5 VAL A O 1 ATOM 28 C CB . VAL A 1 5 ? -5.951 -0.877 2.002 1.00 16.87 ? 5 VAL A CB 1 ATOM 29 C CG1 . VAL A 1 5 ? -7.305 -0.248 2.339 1.00 19.47 ? 5 VAL A CG1 1 ATOM 30 C CG2 . VAL A 1 5 ? -5.546 -0.489 0.589 1.00 23.64 ? 5 VAL A CG2 1 ATOM 31 N N . VAL A 1 6 ? -5.765 -0.138 5.277 1.00 22.28 ? 6 VAL A N 1 ATOM 32 C CA . VAL A 1 6 ? -6.309 -0.591 6.561 1.00 16.50 ? 6 VAL A CA 1 ATOM 33 C C . VAL A 1 6 ? -7.696 0.054 6.746 1.00 18.32 ? 6 VAL A C 1 ATOM 34 O O . VAL A 1 6 ? -7.894 1.272 6.728 1.00 16.00 ? 6 VAL A O 1 ATOM 35 C CB . VAL A 1 6 ? -5.403 -0.257 7.765 1.00 18.47 ? 6 VAL A CB 1 ATOM 36 C CG1 . VAL A 1 6 ? -6.004 -0.832 9.018 1.00 15.91 ? 6 VAL A CG1 1 ATOM 37 C CG2 . VAL A 1 6 ? -3.963 -0.793 7.557 1.00 16.99 ? 6 VAL A CG2 1 ATOM 38 O OXT . VAL A 1 6 ? -8.671 -0.662 6.914 1.00 27.33 ? 6 VAL A OXT 1 ATOM 39 N N . MET B 1 1 ? -7.492 -2.481 16.959 1.00 19.26 ? 1 MET B N 1 ATOM 40 C CA . MET B 1 1 ? -6.427 -3.338 16.428 1.00 11.32 ? 1 MET B CA 1 ATOM 41 C C . MET B 1 1 ? -5.107 -2.620 16.548 1.00 10.60 ? 1 MET B C 1 ATOM 42 O O . MET B 1 1 ? -5.075 -1.396 16.650 1.00 18.25 ? 1 MET B O 1 ATOM 43 C CB . MET B 1 1 ? -6.698 -3.691 14.973 1.00 19.94 ? 1 MET B CB 1 ATOM 44 C CG . MET B 1 1 ? -7.000 -2.523 14.107 1.00 13.73 ? 1 MET B CG 1 ATOM 45 S SD . MET B 1 1 ? -6.695 -2.869 12.341 1.00 27.70 ? 1 MET B SD 1 ATOM 46 C CE . MET B 1 1 ? -4.891 -3.074 12.368 1.00 25.72 ? 1 MET B CE 1 ATOM 47 N N . VAL B 1 2 ? -4.042 -3.399 16.569 1.00 15.10 ? 2 VAL B N 1 ATOM 48 C CA . VAL B 1 2 ? -2.682 -2.864 16.567 1.00 7.91 ? 2 VAL B CA 1 ATOM 49 C C . VAL B 1 2 ? -1.993 -3.615 15.419 1.00 14.49 ? 2 VAL B C 1 ATOM 50 O O . VAL B 1 2 ? -1.911 -4.858 15.407 1.00 11.46 ? 2 VAL B O 1 ATOM 51 C CB . VAL B 1 2 ? -1.988 -3.136 17.908 1.00 12.71 ? 2 VAL B CB 1 ATOM 52 C CG1 . VAL B 1 2 ? -0.523 -2.582 17.936 1.00 13.52 ? 2 VAL B CG1 1 ATOM 53 C CG2 . VAL B 1 2 ? -2.817 -2.604 19.053 1.00 20.92 ? 2 VAL B CG2 1 ATOM 54 N N . GLY B 1 3 ? -1.532 -2.861 14.432 1.00 18.90 ? 3 GLY B N 1 ATOM 55 C CA . GLY B 1 3 ? -0.925 -3.455 13.248 1.00 15.93 ? 3 GLY B CA 1 ATOM 56 C C . GLY B 1 3 ? -1.357 -2.758 11.989 1.00 8.27 ? 3 GLY B C 1 ATOM 57 O O . GLY B 1 3 ? -1.637 -1.530 11.971 1.00 14.18 ? 3 GLY B O 1 ATOM 58 N N . GLY B 1 4 ? -1.453 -3.548 10.932 1.00 16.53 ? 4 GLY B N 1 ATOM 59 C CA . GLY B 1 4 ? -1.823 -3.062 9.616 1.00 13.41 ? 4 GLY B CA 1 ATOM 60 C C . GLY B 1 4 ? -0.885 -3.652 8.597 1.00 9.84 ? 4 GLY B C 1 ATOM 61 O O . GLY B 1 4 ? -0.710 -4.862 8.541 1.00 19.62 ? 4 GLY B O 1 ATOM 62 N N . VAL B 1 5 ? -0.278 -2.790 7.795 1.00 13.70 ? 5 VAL B N 1 ATOM 63 C CA . VAL B 1 5 ? 0.698 -3.220 6.830 1.00 6.73 ? 5 VAL B CA 1 ATOM 64 C C . VAL B 1 5 ? 2.008 -2.612 7.300 1.00 7.39 ? 5 VAL B C 1 ATOM 65 O O . VAL B 1 5 ? 2.124 -1.397 7.361 1.00 18.84 ? 5 VAL B O 1 ATOM 66 C CB . VAL B 1 5 ? 0.315 -2.756 5.437 1.00 14.34 ? 5 VAL B CB 1 ATOM 67 C CG1 . VAL B 1 5 ? 1.277 -3.308 4.440 1.00 6.75 ? 5 VAL B CG1 1 ATOM 68 C CG2 . VAL B 1 5 ? -1.121 -3.204 5.143 1.00 14.05 ? 5 VAL B CG2 1 ATOM 69 N N . VAL B 1 6 ? 2.965 -3.457 7.664 1.00 13.23 ? 6 VAL B N 1 ATOM 70 C CA . VAL B 1 6 ? 4.237 -2.975 8.281 1.00 12.21 ? 6 VAL B CA 1 ATOM 71 C C . VAL B 1 6 ? 5.452 -3.679 7.670 1.00 16.59 ? 6 VAL B C 1 ATOM 72 O O . VAL B 1 6 ? 5.474 -4.896 7.519 1.00 24.43 ? 6 VAL B O 1 ATOM 73 C CB . VAL B 1 6 ? 4.227 -3.251 9.788 1.00 21.27 ? 6 VAL B CB 1 ATOM 74 C CG1 . VAL B 1 6 ? 5.374 -2.529 10.464 1.00 18.90 ? 6 VAL B CG1 1 ATOM 75 C CG2 . VAL B 1 6 ? 2.852 -2.845 10.411 1.00 19.43 ? 6 VAL B CG2 1 ATOM 76 O OXT . VAL B 1 6 ? 6.466 -3.069 7.355 1.00 25.21 ? 6 VAL B OXT 1 #