0.01603
0.00926
0.00000
0.00000
0.01851
0.00000
0.00000
0.00000
0.00865
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.000
90.000
120.000
62.373
62.373
115.574
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C8 H18 O5
194.226
TETRAETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
390
686
698
10.1016/j.jmb.2009.05.023
19450606
Crystal structure of histidine phosphotransfer protein ShpA, an essential regulator of stalk biogenesis in Caulobacter crescentus.
2009
10.2210/pdb2ooc/pdb
pdb_00002ooc
100
1
100
2
Flat mirror (vertical focusing)
CCD
2007-01-18
MARMOSAIC 325 mm CCD
1m long Rh coated bent cylindrical mirror for horizontal and vertical focussing
CCD
2007-01-17
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
Double-crystal
MAD
M
x-ray
1
0.91837
1.0
0.918381
1.0
0.978575
1.0
BL11-1
SSRL
0.91837
SYNCHROTRON
SSRL BEAMLINE BL11-1
BL1-5
SSRL
0.918381, 0.978575
SYNCHROTRON
SSRL BEAMLINE BL1-5
12079.277
Histidine phosphotransferase
2.7.3.-
2
man
polymer
194.226
TETRAETHYLENE GLYCOL
3
syn
non-polymer
92.094
GLYCEROL
2
syn
non-polymer
18.015
water
219
nat
water
no
yes
G(MSE)ARRDISGAVDFAYLEGFAAGDFAVVDEVLALFREQAALWAP(MSE)LDPTHPGWKDAVHTVKGAARGVGAFNLG
EVCERCEAGQESLEGVRTALDAALLDIAAYAHEQALRSLKG
GMARRDISGAVDFAYLEGFAAGDFAVVDEVLALFREQAALWAPMLDPTHPGWKDAVHTVKGAARGVGAFNLGEVCERCEA
GQESLEGVRTALDAALLDIAAYAHEQALRSLKG
A,B
369423
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Caulobacter
Caulobacter vibrioides
CB15
Escherichia
sample
NP_419930.1, shpA, CC1114
190650
Caulobacter crescentus
562
Escherichia coli
HK100
Plasmid
speedET
2
2.69
54.20
THE STRUCTURE WAS SOLVED BY MAD METHOD USING
A DIFFERENT CRYSTAL. THE PHASE RESTRAINTS FROM
THAT CRYSTAL WERE USED IN THE CURRENT REFINEMENT.
THE STRUCTURE WAS SOLVED BY MAD METHOD USING
A DIFFERENT CRYSTAL. THE PHASE RESTRAINTS FROM
THAT CRYSTAL WERE USED IN THE CURRENT REFINEMENT.
VAPOR DIFFUSION, SITTING DROP
6.9
NANODROP, 1.5% polyethylene glycol 400, 15.0% Glycerol, 1.9M ammonium sulfate, 0.1M HEPES pH 6.9, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
VAPOR DIFFUSION, SITTING DROP
6.9
NANODROP, 1.5% polyethylene glycol 400, 15.0% Glycerol, 1.9M ammonium sulfate, 0.1M HEPES pH 6.9, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
software
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Advisory
Source and taxonomy
Version format compliance
Refinement description
Database references
Derived calculations
1
0
2007-02-06
1
1
2008-05-01
1
2
2011-07-13
1
3
2017-10-18
1
4
2023-01-25
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
SEQUENCE
THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG
MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV
PROTEASE LEAVING ONLY A GLYCINE, FOLLOWED BY THE
TARGET SEQUENCE.
Y
RCSB
Y
RCSB
2007-01-25
REL
REL
PG4
TETRAETHYLENE GLYCOL
GOL
GLYCEROL
HOH
water
PG4
5
2
PG4
PG4
113
A
GOL
1
3
GOL
GOL
114
A
PG4
3
2
PG4
PG4
113
B
PG4
4
2
PG4
PG4
114
B
GOL
2
3
GOL
GOL
115
B
HOH
8
4
HOH
HOH
115
A
HOH
9
4
HOH
HOH
116
A
HOH
10
4
HOH
HOH
117
A
HOH
11
4
HOH
HOH
118
A
HOH
14
4
HOH
HOH
119
A
HOH
15
4
HOH
HOH
120
A
HOH
19
4
HOH
HOH
121
A
HOH
20
4
HOH
HOH
122
A
HOH
22
4
HOH
HOH
123
A
HOH
28
4
HOH
HOH
124
A
HOH
31
4
HOH
HOH
125
A
HOH
32
4
HOH
HOH
126
A
HOH
34
4
HOH
HOH
127
A
HOH
37
4
HOH
HOH
128
A
HOH
38
4
HOH
HOH
129
A
HOH
40
4
HOH
HOH
130
A
HOH
41
4
HOH
HOH
131
A
HOH
42
4
HOH
HOH
132
A
HOH
44
4
HOH
HOH
133
A
HOH
45
4
HOH
HOH
134
A
HOH
49
4
HOH
HOH
135
A
HOH
54
4
HOH
HOH
136
A
HOH
55
4
HOH
HOH
137
A
HOH
56
4
HOH
HOH
138
A
HOH
60
4
HOH
HOH
139
A
HOH
61
4
HOH
HOH
140
A
HOH
62
4
HOH
HOH
141
A
HOH
63
4
HOH
HOH
142
A
HOH
65
4
HOH
HOH
143
A
HOH
66
4
HOH
HOH
144
A
HOH
68
4
HOH
HOH
145
A
HOH
69
4
HOH
HOH
146
A
HOH
70
4
HOH
HOH
147
A
HOH
71
4
HOH
HOH
148
A
HOH
76
4
HOH
HOH
149
A
HOH
78
4
HOH
HOH
150
A
HOH
79
4
HOH
HOH
151
A
HOH
84
4
HOH
HOH
152
A
HOH
85
4
HOH
HOH
153
A
HOH
88
4
HOH
HOH
154
A
HOH
91
4
HOH
HOH
155
A
HOH
92
4
HOH
HOH
156
A
HOH
95
4
HOH
HOH
157
A
HOH
97
4
HOH
HOH
158
A
HOH
100
4
HOH
HOH
159
A
HOH
104
4
HOH
HOH
160
A
HOH
105
4
HOH
HOH
161
A
HOH
107
4
HOH
HOH
162
A
HOH
109
4
HOH
HOH
163
A
HOH
110
4
HOH
HOH
164
A
HOH
113
4
HOH
HOH
165
A
HOH
114
4
HOH
HOH
166
A
HOH
116
4
HOH
HOH
167
A
HOH
119
4
HOH
HOH
168
A
HOH
120
4
HOH
HOH
169
A
HOH
122
4
HOH
HOH
170
A
HOH
123
4
HOH
HOH
171
A
HOH
124
4
HOH
HOH
172
A
HOH
129
4
HOH
HOH
173
A
HOH
131
4
HOH
HOH
174
A
HOH
132
4
HOH
HOH
175
A
HOH
133
4
HOH
HOH
176
A
HOH
136
4
HOH
HOH
177
A
HOH
137
4
HOH
HOH
178
A
HOH
140
4
HOH
HOH
179
A
HOH
141
4
HOH
HOH
180
A
HOH
143
4
HOH
HOH
181
A
HOH
144
4
HOH
HOH
182
A
HOH
146
4
HOH
HOH
183
A
HOH
148
4
HOH
HOH
184
A
HOH
149
4
HOH
HOH
185
A
HOH
151
4
HOH
HOH
186
A
HOH
157
4
HOH
HOH
187
A
HOH
162
4
HOH
HOH
188
A
HOH
163
4
HOH
HOH
189
A
HOH
164
4
HOH
HOH
190
A
HOH
167
4
HOH
HOH
191
A
HOH
170
4
HOH
HOH
192
A
HOH
172
4
HOH
HOH
193
A
HOH
174
4
HOH
HOH
194
A
HOH
175
4
HOH
HOH
195
A
HOH
179
4
HOH
HOH
196
A
HOH
181
4
HOH
HOH
197
A
HOH
183
4
HOH
HOH
198
A
HOH
184
4
HOH
HOH
199
A
HOH
186
4
HOH
HOH
200
A
HOH
188
4
HOH
HOH
201
A
HOH
192
4
HOH
HOH
202
A
HOH
193
4
HOH
HOH
203
A
HOH
194
4
HOH
HOH
204
A
HOH
196
4
HOH
HOH
205
A
HOH
198
4
HOH
HOH
206
A
HOH
203
4
HOH
HOH
207
A
HOH
204
4
HOH
HOH
208
A
HOH
205
4
HOH
HOH
209
A
HOH
207
4
HOH
HOH
210
A
HOH
208
4
HOH
HOH
211
A
HOH
210
4
HOH
HOH
212
A
HOH
211
4
HOH
HOH
213
A
HOH
212
4
HOH
HOH
214
A
HOH
213
4
HOH
HOH
215
A
HOH
214
4
HOH
HOH
216
A
HOH
215
4
HOH
HOH
217
A
HOH
216
4
HOH
HOH
218
A
HOH
218
4
HOH
HOH
219
A
HOH
219
4
HOH
HOH
220
A
HOH
220
4
HOH
HOH
221
A
HOH
221
4
HOH
HOH
222
A
HOH
224
4
HOH
HOH
223
A
HOH
6
4
HOH
HOH
116
B
HOH
7
4
HOH
HOH
117
B
HOH
12
4
HOH
HOH
118
B
HOH
13
4
HOH
HOH
119
B
HOH
16
4
HOH
HOH
120
B
HOH
17
4
HOH
HOH
121
B
HOH
18
4
HOH
HOH
122
B
HOH
21
4
HOH
HOH
123
B
HOH
23
4
HOH
HOH
124
B
HOH
24
4
HOH
HOH
125
B
HOH
25
4
HOH
HOH
126
B
HOH
26
4
HOH
HOH
127
B
HOH
27
4
HOH
HOH
128
B
HOH
29
4
HOH
HOH
129
B
HOH
30
4
HOH
HOH
130
B
HOH
33
4
HOH
HOH
131
B
HOH
35
4
HOH
HOH
132
B
HOH
36
4
HOH
HOH
133
B
HOH
39
4
HOH
HOH
134
B
HOH
43
4
HOH
HOH
135
B
HOH
46
4
HOH
HOH
136
B
HOH
47
4
HOH
HOH
137
B
HOH
48
4
HOH
HOH
138
B
HOH
50
4
HOH
HOH
139
B
HOH
51
4
HOH
HOH
140
B
HOH
52
4
HOH
HOH
141
B
HOH
53
4
HOH
HOH
142
B
HOH
57
4
HOH
HOH
143
B
HOH
58
4
HOH
HOH
144
B
HOH
59
4
HOH
HOH
145
B
HOH
64
4
HOH
HOH
146
B
HOH
67
4
HOH
HOH
147
B
HOH
72
4
HOH
HOH
148
B
HOH
73
4
HOH
HOH
149
B
HOH
74
4
HOH
HOH
150
B
HOH
75
4
HOH
HOH
151
B
HOH
77
4
HOH
HOH
152
B
HOH
80
4
HOH
HOH
153
B
HOH
81
4
HOH
HOH
154
B
HOH
82
4
HOH
HOH
155
B
HOH
83
4
HOH
HOH
156
B
HOH
86
4
HOH
HOH
157
B
HOH
87
4
HOH
HOH
158
B
HOH
89
4
HOH
HOH
159
B
HOH
90
4
HOH
HOH
160
B
HOH
93
4
HOH
HOH
161
B
HOH
94
4
HOH
HOH
162
B
HOH
96
4
HOH
HOH
163
B
HOH
98
4
HOH
HOH
164
B
HOH
99
4
HOH
HOH
165
B
HOH
101
4
HOH
HOH
166
B
HOH
102
4
HOH
HOH
167
B
HOH
103
4
HOH
HOH
168
B
HOH
106
4
HOH
HOH
169
B
HOH
108
4
HOH
HOH
170
B
HOH
111
4
HOH
HOH
171
B
HOH
112
4
HOH
HOH
172
B
HOH
115
4
HOH
HOH
173
B
HOH
117
4
HOH
HOH
174
B
HOH
118
4
HOH
HOH
175
B
HOH
121
4
HOH
HOH
176
B
HOH
125
4
HOH
HOH
177
B
HOH
126
4
HOH
HOH
178
B
HOH
127
4
HOH
HOH
179
B
HOH
128
4
HOH
HOH
180
B
HOH
130
4
HOH
HOH
181
B
HOH
134
4
HOH
HOH
182
B
HOH
135
4
HOH
HOH
183
B
HOH
138
4
HOH
HOH
184
B
HOH
139
4
HOH
HOH
185
B
HOH
142
4
HOH
HOH
186
B
HOH
145
4
HOH
HOH
187
B
HOH
147
4
HOH
HOH
188
B
HOH
150
4
HOH
HOH
189
B
HOH
152
4
HOH
HOH
190
B
HOH
153
4
HOH
HOH
191
B
HOH
154
4
HOH
HOH
192
B
HOH
155
4
HOH
HOH
193
B
HOH
156
4
HOH
HOH
194
B
HOH
158
4
HOH
HOH
195
B
HOH
159
4
HOH
HOH
196
B
HOH
160
4
HOH
HOH
197
B
HOH
161
4
HOH
HOH
198
B
HOH
165
4
HOH
HOH
199
B
HOH
166
4
HOH
HOH
200
B
HOH
168
4
HOH
HOH
201
B
HOH
169
4
HOH
HOH
202
B
HOH
171
4
HOH
HOH
203
B
HOH
173
4
HOH
HOH
204
B
HOH
176
4
HOH
HOH
205
B
HOH
177
4
HOH
HOH
206
B
HOH
178
4
HOH
HOH
207
B
HOH
180
4
HOH
HOH
208
B
HOH
182
4
HOH
HOH
209
B
HOH
185
4
HOH
HOH
210
B
HOH
187
4
HOH
HOH
211
B
HOH
189
4
HOH
HOH
212
B
HOH
190
4
HOH
HOH
213
B
HOH
191
4
HOH
HOH
214
B
HOH
195
4
HOH
HOH
215
B
HOH
197
4
HOH
HOH
216
B
HOH
199
4
HOH
HOH
217
B
HOH
200
4
HOH
HOH
218
B
HOH
201
4
HOH
HOH
219
B
HOH
202
4
HOH
HOH
220
B
HOH
206
4
HOH
HOH
221
B
HOH
209
4
HOH
HOH
222
B
HOH
217
4
HOH
HOH
223
B
HOH
222
4
HOH
HOH
224
B
HOH
223
4
HOH
HOH
225
B
n
1
0
A
n
2
1
A
n
3
2
A
n
4
3
A
n
5
4
A
n
6
5
A
n
7
6
A
n
8
7
A
GLY
8
n
9
GLY
8
A
ALA
9
n
10
ALA
9
A
VAL
10
n
11
VAL
10
A
ASP
11
n
12
ASP
11
A
PHE
12
n
13
PHE
12
A
ALA
13
n
14
ALA
13
A
TYR
14
n
15
TYR
14
A
LEU
15
n
16
LEU
15
A
GLU
16
n
17
GLU
16
A
GLY
17
n
18
GLY
17
A
PHE
18
n
19
PHE
18
A
ALA
19
n
20
ALA
19
A
ALA
20
n
21
ALA
20
A
GLY
21
n
22
GLY
21
A
ASP
22
n
23
ASP
22
A
PHE
23
n
24
PHE
23
A
ALA
24
n
25
ALA
24
A
VAL
25
n
26
VAL
25
A
VAL
26
n
27
VAL
26
A
ASP
27
n
28
ASP
27
A
GLU
28
n
29
GLU
28
A
VAL
29
n
30
VAL
29
A
LEU
30
n
31
LEU
30
A
ALA
31
n
32
ALA
31
A
LEU
32
n
33
LEU
32
A
PHE
33
n
34
PHE
33
A
ARG
34
n
35
ARG
34
A
GLU
35
n
36
GLU
35
A
GLN
36
n
37
GLN
36
A
ALA
37
n
38
ALA
37
A
ALA
38
n
39
ALA
38
A
LEU
39
n
40
LEU
39
A
TRP
40
n
41
TRP
40
A
ALA
41
n
42
ALA
41
A
PRO
42
n
43
PRO
42
A
MSE
43
n
44
MSE
43
A
LEU
44
n
45
LEU
44
A
ASP
45
n
46
ASP
45
A
PRO
46
n
47
PRO
46
A
THR
47
n
48
THR
47
A
HIS
48
n
49
HIS
48
A
PRO
49
n
50
PRO
49
A
GLY
50
n
51
GLY
50
A
TRP
51
n
52
TRP
51
A
LYS
52
n
53
LYS
52
A
ASP
53
n
54
ASP
53
A
ALA
54
n
55
ALA
54
A
VAL
55
n
56
VAL
55
A
HIS
56
n
57
HIS
56
A
THR
57
n
58
THR
57
A
VAL
58
n
59
VAL
58
A
LYS
59
n
60
LYS
59
A
GLY
60
n
61
GLY
60
A
ALA
61
n
62
ALA
61
A
ALA
62
n
63
ALA
62
A
ARG
63
n
64
ARG
63
A
GLY
64
n
65
GLY
64
A
VAL
65
n
66
VAL
65
A
GLY
66
n
67
GLY
66
A
ALA
67
n
68
ALA
67
A
PHE
68
n
69
PHE
68
A
ASN
69
n
70
ASN
69
A
LEU
70
n
71
LEU
70
A
GLY
71
n
72
GLY
71
A
GLU
72
n
73
GLU
72
A
VAL
73
n
74
VAL
73
A
CYS
74
n
75
CYS
74
A
GLU
75
n
76
GLU
75
A
ARG
76
n
77
ARG
76
A
CYS
77
n
78
CYS
77
A
GLU
78
n
79
GLU
78
A
ALA
79
n
80
ALA
79
A
GLY
80
n
81
GLY
80
A
GLN
81
n
82
GLN
81
A
GLU
82
n
83
GLU
82
A
SER
83
n
84
SER
83
A
LEU
84
n
85
LEU
84
A
GLU
85
n
86
GLU
85
A
GLY
86
n
87
GLY
86
A
VAL
87
n
88
VAL
87
A
ARG
88
n
89
ARG
88
A
THR
89
n
90
THR
89
A
ALA
90
n
91
ALA
90
A
LEU
91
n
92
LEU
91
A
ASP
92
n
93
ASP
92
A
ALA
93
n
94
ALA
93
A
ALA
94
n
95
ALA
94
A
LEU
95
n
96
LEU
95
A
LEU
96
n
97
LEU
96
A
ASP
97
n
98
ASP
97
A
ILE
98
n
99
ILE
98
A
ALA
99
n
100
ALA
99
A
ALA
100
n
101
ALA
100
A
TYR
101
n
102
TYR
101
A
ALA
102
n
103
ALA
102
A
HIS
103
n
104
HIS
103
A
GLU
104
n
105
GLU
104
A
GLN
105
n
106
GLN
105
A
ALA
106
n
107
ALA
106
A
LEU
107
n
108
LEU
107
A
ARG
108
n
109
ARG
108
A
SER
109
n
110
SER
109
A
LEU
110
n
111
LEU
110
A
LYS
111
n
112
LYS
111
A
n
113
112
A
n
1
0
B
n
2
1
B
n
3
2
B
n
4
3
B
n
5
4
B
n
6
5
B
n
7
6
B
n
8
7
B
GLY
8
n
9
GLY
8
B
ALA
9
n
10
ALA
9
B
VAL
10
n
11
VAL
10
B
ASP
11
n
12
ASP
11
B
PHE
12
n
13
PHE
12
B
ALA
13
n
14
ALA
13
B
TYR
14
n
15
TYR
14
B
LEU
15
n
16
LEU
15
B
GLU
16
n
17
GLU
16
B
GLY
17
n
18
GLY
17
B
PHE
18
n
19
PHE
18
B
ALA
19
n
20
ALA
19
B
ALA
20
n
21
ALA
20
B
GLY
21
n
22
GLY
21
B
ASP
22
n
23
ASP
22
B
PHE
23
n
24
PHE
23
B
ALA
24
n
25
ALA
24
B
VAL
25
n
26
VAL
25
B
VAL
26
n
27
VAL
26
B
ASP
27
n
28
ASP
27
B
GLU
28
n
29
GLU
28
B
VAL
29
n
30
VAL
29
B
LEU
30
n
31
LEU
30
B
ALA
31
n
32
ALA
31
B
LEU
32
n
33
LEU
32
B
PHE
33
n
34
PHE
33
B
ARG
34
n
35
ARG
34
B
GLU
35
n
36
GLU
35
B
GLN
36
n
37
GLN
36
B
ALA
37
n
38
ALA
37
B
ALA
38
n
39
ALA
38
B
LEU
39
n
40
LEU
39
B
TRP
40
n
41
TRP
40
B
ALA
41
n
42
ALA
41
B
PRO
42
n
43
PRO
42
B
MSE
43
n
44
MSE
43
B
LEU
44
n
45
LEU
44
B
ASP
45
n
46
ASP
45
B
PRO
46
n
47
PRO
46
B
THR
47
n
48
THR
47
B
HIS
48
n
49
HIS
48
B
PRO
49
n
50
PRO
49
B
GLY
50
n
51
GLY
50
B
TRP
51
n
52
TRP
51
B
LYS
52
n
53
LYS
52
B
ASP
53
n
54
ASP
53
B
ALA
54
n
55
ALA
54
B
VAL
55
n
56
VAL
55
B
HIS
56
n
57
HIS
56
B
THR
57
n
58
THR
57
B
VAL
58
n
59
VAL
58
B
LYS
59
n
60
LYS
59
B
GLY
60
n
61
GLY
60
B
ALA
61
n
62
ALA
61
B
ALA
62
n
63
ALA
62
B
ARG
63
n
64
ARG
63
B
GLY
64
n
65
GLY
64
B
VAL
65
n
66
VAL
65
B
GLY
66
n
67
GLY
66
B
ALA
67
n
68
ALA
67
B
PHE
68
n
69
PHE
68
B
ASN
69
n
70
ASN
69
B
LEU
70
n
71
LEU
70
B
GLY
71
n
72
GLY
71
B
GLU
72
n
73
GLU
72
B
VAL
73
n
74
VAL
73
B
CYS
74
n
75
CYS
74
B
GLU
75
n
76
GLU
75
B
ARG
76
n
77
ARG
76
B
CYS
77
n
78
CYS
77
B
GLU
78
n
79
GLU
78
B
ALA
79
n
80
ALA
79
B
GLY
80
n
81
GLY
80
B
GLN
81
n
82
GLN
81
B
GLU
82
n
83
GLU
82
B
SER
83
n
84
SER
83
B
LEU
84
n
85
LEU
84
B
GLU
85
n
86
GLU
85
B
GLY
86
n
87
GLY
86
B
VAL
87
n
88
VAL
87
B
ARG
88
n
89
ARG
88
B
THR
89
n
90
THR
89
B
ALA
90
n
91
ALA
90
B
LEU
91
n
92
LEU
91
B
ASP
92
n
93
ASP
92
B
ALA
93
n
94
ALA
93
B
ALA
94
n
95
ALA
94
B
LEU
95
n
96
LEU
95
B
LEU
96
n
97
LEU
96
B
ASP
97
n
98
ASP
97
B
ILE
98
n
99
ILE
98
B
ALA
99
n
100
ALA
99
B
ALA
100
n
101
ALA
100
B
TYR
101
n
102
TYR
101
B
ALA
102
n
103
ALA
102
B
HIS
103
n
104
HIS
103
B
GLU
104
n
105
GLU
104
B
GLN
105
n
106
GLN
105
B
ALA
106
n
107
ALA
106
B
LEU
107
n
108
LEU
107
B
ARG
108
n
109
ARG
108
B
SER
109
n
110
SER
109
B
LEU
110
n
111
LEU
110
B
LYS
111
n
112
LYS
111
B
GLY
112
n
113
GLY
112
B
1.9888
-0.7866
-0.6149
0.4627
0.5752
0.9294
-0.0353
-0.0212
-0.0982
-0.1444
0.0697
-0.0570
-0.1103
-0.0085
-0.0345
-0.0259
-0.0286
0.0089
-0.0153
-0.0036
0.0059
refined
34.0090
27.7910
0.8930
X-RAY DIFFRACTION
0.8997
0.1368
-0.1592
1.8964
-0.9850
2.5444
0.0047
-0.1855
0.0389
0.1681
0.1512
0.0902
-0.1974
-0.2762
-0.1559
-0.0683
0.0269
0.0135
0.0270
-0.0023
0.0163
refined
41.0550
37.6280
20.6040
X-RAY DIFFRACTION
A
8
A
9
A
111
A
112
X-RAY DIFFRACTION
1
ALL
B
8
B
9
B
112
B
113
X-RAY DIFFRACTION
2
ALL
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
A
MSE
43
SELENOMETHIONINE
A
MSE
44
MET
B
MSE
43
SELENOMETHIONINE
B
MSE
44
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CD
GLU
72
A
CD
GLU
73
1
Y
1
A
OE1
GLU
72
A
OE1
GLU
73
1
Y
1
A
OE2
GLU
72
A
OE2
GLU
73
1
Y
1
A
OE1
GLU
75
A
OE1
GLU
76
1
Y
1
A
OE2
GLU
75
A
OE2
GLU
76
1
Y
1
A
CG
ARG
108
A
CG
ARG
109
1
Y
1
A
CD
ARG
108
A
CD
ARG
109
1
Y
1
A
NE
ARG
108
A
NE
ARG
109
1
Y
1
A
CZ
ARG
108
A
CZ
ARG
109
1
Y
1
A
NH1
ARG
108
A
NH1
ARG
109
1
Y
1
A
NH2
ARG
108
A
NH2
ARG
109
1
Y
1
A
C6
PG4
113
C
C6
PG4
1
1
N
1
A
O4
PG4
113
C
O4
PG4
1
1
N
1
A
C7
PG4
113
C
C7
PG4
1
1
N
1
A
C8
PG4
113
C
C8
PG4
1
1
N
1
A
O5
PG4
113
C
O5
PG4
1
1
N
1
B
C7
PG4
113
E
C7
PG4
1
1
N
1
B
C8
PG4
113
E
C8
PG4
1
1
N
1
B
O5
PG4
113
E
O5
PG4
1
1
N
1
B
C5
PG4
114
F
C5
PG4
1
1
N
1
B
C6
PG4
114
F
C6
PG4
1
1
N
1
B
O4
PG4
114
F
O4
PG4
1
1
N
1
B
C7
PG4
114
F
C7
PG4
1
1
N
1
B
C8
PG4
114
F
C8
PG4
1
1
N
1
B
O5
PG4
114
F
O5
PG4
1
1
N
1
A
GLY
0
A
GLY
1
1
Y
1
A
MSE
1
A
MSE
2
1
Y
1
A
ALA
2
A
ALA
3
1
Y
1
A
ARG
3
A
ARG
4
1
Y
1
A
ARG
4
A
ARG
5
1
Y
1
A
ASP
5
A
ASP
6
1
Y
1
A
ILE
6
A
ILE
7
1
Y
1
A
SER
7
A
SER
8
1
Y
1
A
GLY
112
A
GLY
113
1
Y
1
B
GLY
0
B
GLY
1
1
Y
1
B
MSE
1
B
MSE
2
1
Y
1
B
ALA
2
B
ALA
3
1
Y
1
B
ARG
3
B
ARG
4
1
Y
1
B
ARG
4
B
ARG
5
1
Y
1
B
ASP
5
B
ASP
6
1
Y
1
B
ILE
6
B
ILE
7
1
Y
1
B
SER
7
B
SER
8
1
Y
1
A
A
NE2
O
GLN
HOH
36
185
2.15
1
A
A
O
O
HOH
HOH
187
203
2.19
22.111
1.120
0.560
0.000
1.120
0.000
-1.670
0.975
0.961
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY.
3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE
INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY
OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75
FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION.
4. PG4 AND GOL ARE MODELED BASED ON THE CRYSTALLIZATION
CONDITIONS.
5. B21 HAS POORLY DEFINED ELECTRON DENSITY. RESIDUES 0-7 IN BOTH
CHAINS (A AND B) ARE DISORDERED.
0.202
0.166
0.168
0.168
1.52
28.89
2051
40897
5.000
99.900
3.072
0.054
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
MAD
0.063
0.069
0.800
0.800
1.200
MAXIMUM LIKELIHOOD WITH PHASES
BABINET MODEL WITH MASK
1.52
28.89
219
1803
37
0
1547
0.018
0.022
1702
0.009
0.020
1131
1.704
1.958
2315
1.047
3.000
2762
4.608
5.000
232
36.183
24.198
81
13.712
15.000
255
11.333
15.000
11
0.114
0.200
251
0.008
0.020
1965
0.001
0.020
358
0.230
0.200
400
0.191
0.200
1161
0.188
0.200
859
0.092
0.200
856
0.193
0.200
157
0.087
0.200
9
0.300
0.200
32
0.204
0.200
11
2.352
3.000
1153
0.588
3.000
444
3.037
5.000
1682
5.298
8.000
694
7.786
11.000
620
1
A
1
1157
X-RAY DIFFRACTION
LOOSE POSITIONAL
1.120
5.000
1
A
1
1157
X-RAY DIFFRACTION
LOOSE THERMAL
3.280
10.000
0.282
0.263
1.56
163
2778
2941
20
98.660
23.88
1.52
28.89
2OOC
40951
0.068
0.068
1,2
6.200
6.900
100.000
0.811
1.52
1.56
0.9
15275
2993
0.811
1,2
5.10
100.00
0.649
1.56
1.60
1.2
14959
2895
0.649
1,2
5.20
100.00
0.501
1.60
1.65
1.5
14716
2823
0.501
1,2
5.20
100.00
0.381
1.65
1.70
2.0
14415
2736
0.381
1,2
5.30
100.00
0.333
1.70
1.76
2.3
14377
2695
0.333
1,2
5.30
100.00
0.247
1.76
1.82
3.1
13754
2557
0.247
1,2
5.40
100.00
0.198
1.82
1.89
3.8
13660
2521
0.198
1,2
5.40
100.00
0.159
1.89
1.96
4.6
12989
2406
0.159
1,2
5.40
100.00
0.123
1.96
2.05
5.6
12474
2288
0.123
1,2
5.50
100.00
0.103
2.05
2.15
6.5
12122
2242
0.103
1,2
5.40
100.00
0.123
2.15
2.27
5.0
14182
2111
0.123
1,2
6.70
100.00
0.128
2.27
2.40
5.2
18938
2012
0.128
1,2
9.40
100.00
0.108
2.40
2.57
6.0
20388
1878
0.108
1,2
10.90
100.00
0.087
2.57
2.78
7.6
19205
1766
0.087
1,2
10.90
100.00
0.07
2.78
3.04
9.2
17848
1638
0.07
1,2
10.90
100.00
0.061
3.04
3.40
10.1
15972
1486
0.061
1,2
10.70
100.00
0.051
3.40
3.92
11.2
14153
1329
0.051
1,2
10.60
100.00
0.051
3.92
4.81
11.6
11819
1141
0.051
1,2
10.40
100.00
0.05
4.81
6.80
12.4
8923
897
0.05
1,2
9.90
100.00
0.045
6.80
28.94
12.5
4143
537
0.045
1,2
7.70
98.70
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
phasing
George Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
5.2.0019
data scaling
Phil Evans
pre@mrc-lmb.cam.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/INDEX.html
SCALA
other
data extraction
PDB
sw-help@rcsb.rutgers.edu
April. 3, 2006
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
2.000
data collection
MAR345
CCD
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
phasing
SHELXD
phasing
autoSHARP
Crystal structure of Histidine Phosphotransferase ShpA (NP_419930.1) from Caulobacter crescentus at 1.52 A resolution
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
ASP
11
A
ASP
12
HELX_P
A
ALA
19
A
ALA
20
1
1
9
A
ASP
22
A
ASP
23
HELX_P
A
ALA
41
A
ALA
42
1
2
20
A
PRO
42
A
PRO
43
HELX_P
A
LEU
44
A
LEU
45
5
3
3
A
GLY
50
A
GLY
51
HELX_P
A
GLY
66
A
GLY
67
1
4
17
A
ALA
67
A
ALA
68
HELX_P
A
ALA
79
A
ALA
80
1
5
13
A
SER
83
A
SER
84
HELX_P
A
LYS
111
A
LYS
112
1
6
29
B
ASP
11
B
ASP
12
HELX_P
B
GLY
17
B
GLY
18
1
7
7
B
PHE
23
B
PHE
24
HELX_P
B
LEU
44
B
LEU
45
1
8
22
B
GLY
50
B
GLY
51
HELX_P
B
GLY
66
B
GLY
67
1
9
17
B
ALA
67
B
ALA
68
HELX_P
B
ALA
79
B
ALA
80
1
10
13
B
SER
83
B
SER
84
HELX_P
B
GLY
112
B
GLY
113
1
11
30
covale
1.329
both
A
PRO
42
A
C
PRO
43
1_555
A
MSE
43
A
N
MSE
44
1_555
covale
1.343
both
A
MSE
43
A
C
MSE
44
1_555
A
LEU
44
A
N
LEU
45
1_555
covale
1.343
both
B
PRO
42
B
C
PRO
43
1_555
B
MSE
43
B
N
MSE
44
1_555
covale
1.330
both
B
MSE
43
B
C
MSE
44
1_555
B
LEU
44
B
N
LEU
45
1_555
TRANSFERASE
NP_419930.1, hypothetical protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, TRANSFERASE
A
B
A
8
A
GLY
9
A
111
A
LYS
112
6
B
8
B
GLY
9
B
112
B
GLY
113
6
A0EJF9_CAUCR
UNP
1
1
A0EJF9
MARRDISGAVDFAYLEGFAAGDFAVVDEVLALFREQAALWAPMLDPTHPGWKDAVHTVKGAARGVGAFNLGEVCERCEAG
QESLEGVRTALDAALLDIAAYAHEQALRSLKG
1
112
2OOC
1
112
A0EJF9
A
1
2
113
1
112
2OOC
1
112
A0EJF9
B
1
2
113
1
expression tag
GLY
0
2OOC
A
A0EJF9
UNP
1
1
MET
modified residue
MSE
1
2OOC
A
A0EJF9
UNP
1
2
1
MET
modified residue
MSE
43
2OOC
A
A0EJF9
UNP
43
44
2
expression tag
GLY
0
2OOC
B
A0EJF9
UNP
1
2
MET
modified residue
MSE
1
2OOC
B
A0EJF9
UNP
1
2
2
MET
modified residue
MSE
43
2OOC
B
A0EJF9
UNP
43
44
BINDING SITE FOR RESIDUE PG4 B 113
B
PG4
113
Software
7
BINDING SITE FOR RESIDUE PG4 B 114
B
PG4
114
Software
5
BINDING SITE FOR RESIDUE PG4 A 113
A
PG4
113
Software
5
BINDING SITE FOR RESIDUE GOL A 114
A
GOL
114
Software
7
BINDING SITE FOR RESIDUE GOL B 115
B
GOL
115
Software
4
A
HIS
48
A
HIS
49
7
4_655
A
PRO
49
A
PRO
50
7
4_655
B
LYS
52
B
LYS
53
7
1_555
B
CYS
77
B
CYS
78
7
1_555
B
GLU
78
B
GLU
79
7
1_555
B
PG4
114
F
PG4
7
1_555
B
HOH
223
I
HOH
7
1_555
A
MSE
43
A
MSE
44
5
4_655
B
PRO
46
B
PRO
47
5
1_555
B
PRO
49
B
PRO
50
5
1_555
B
TRP
51
B
TRP
52
5
1_555
B
PG4
113
E
PG4
5
1_555
A
PRO
46
A
PRO
47
5
1_555
A
TRP
51
A
TRP
52
5
1_555
A
GLY
80
A
GLY
81
5
1_555
A
GLU
82
A
GLU
83
5
1_555
A
LEU
84
A
LEU
85
5
1_555
A
PRO
46
A
PRO
47
7
1_555
A
SER
83
A
SER
84
7
1_555
A
LEU
84
A
LEU
85
7
1_555
A
GLU
85
A
GLU
86
7
1_555
A
ARG
88
A
ARG
89
7
1_555
A
HOH
130
H
HOH
7
1_555
A
HOH
176
H
HOH
7
1_555
A
ASP
53
A
ASP
54
4
4_655
B
ARG
88
B
ARG
89
4
1_555
B
HOH
138
I
HOH
4
1_555
B
HOH
224
I
HOH
4
1_555
154
P 32 2 1