0.01603 0.00926 0.00000 0.00000 0.01851 0.00000 0.00000 0.00000 0.00865 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.000 90.000 120.000 62.373 62.373 115.574 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C8 H18 O5 194.226 TETRAETHYLENE GLYCOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 390 686 698 10.1016/j.jmb.2009.05.023 19450606 Crystal structure of histidine phosphotransfer protein ShpA, an essential regulator of stalk biogenesis in Caulobacter crescentus. 2009 10.2210/pdb2ooc/pdb pdb_00002ooc 100 1 100 2 Flat mirror (vertical focusing) CCD 2007-01-18 MARMOSAIC 325 mm CCD 1m long Rh coated bent cylindrical mirror for horizontal and vertical focussing CCD 2007-01-17 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 Double-crystal MAD M x-ray 1 0.91837 1.0 0.918381 1.0 0.978575 1.0 BL11-1 SSRL 0.91837 SYNCHROTRON SSRL BEAMLINE BL11-1 BL1-5 SSRL 0.918381, 0.978575 SYNCHROTRON SSRL BEAMLINE BL1-5 12079.277 Histidine phosphotransferase 2.7.3.- 2 man polymer 194.226 TETRAETHYLENE GLYCOL 3 syn non-polymer 92.094 GLYCEROL 2 syn non-polymer 18.015 water 219 nat water no yes G(MSE)ARRDISGAVDFAYLEGFAAGDFAVVDEVLALFREQAALWAP(MSE)LDPTHPGWKDAVHTVKGAARGVGAFNLG EVCERCEAGQESLEGVRTALDAALLDIAAYAHEQALRSLKG GMARRDISGAVDFAYLEGFAAGDFAVVDEVLALFREQAALWAPMLDPTHPGWKDAVHTVKGAARGVGAFNLGEVCERCEA GQESLEGVRTALDAALLDIAAYAHEQALRSLKG A,B 369423 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Caulobacter Caulobacter vibrioides CB15 Escherichia sample NP_419930.1, shpA, CC1114 190650 Caulobacter crescentus 562 Escherichia coli HK100 Plasmid speedET 2 2.69 54.20 THE STRUCTURE WAS SOLVED BY MAD METHOD USING A DIFFERENT CRYSTAL. THE PHASE RESTRAINTS FROM THAT CRYSTAL WERE USED IN THE CURRENT REFINEMENT. THE STRUCTURE WAS SOLVED BY MAD METHOD USING A DIFFERENT CRYSTAL. THE PHASE RESTRAINTS FROM THAT CRYSTAL WERE USED IN THE CURRENT REFINEMENT. VAPOR DIFFUSION, SITTING DROP 6.9 NANODROP, 1.5% polyethylene glycol 400, 15.0% Glycerol, 1.9M ammonium sulfate, 0.1M HEPES pH 6.9, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 VAPOR DIFFUSION, SITTING DROP 6.9 NANODROP, 1.5% polyethylene glycol 400, 15.0% Glycerol, 1.9M ammonium sulfate, 0.1M HEPES pH 6.9, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative software database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Advisory Source and taxonomy Version format compliance Refinement description Database references Derived calculations 1 0 2007-02-06 1 1 2008-05-01 1 2 2011-07-13 1 3 2017-10-18 1 4 2023-01-25 _software.classification _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE, FOLLOWED BY THE TARGET SEQUENCE. Y RCSB Y RCSB 2007-01-25 REL REL PG4 TETRAETHYLENE GLYCOL GOL GLYCEROL HOH water PG4 5 2 PG4 PG4 113 A GOL 1 3 GOL GOL 114 A PG4 3 2 PG4 PG4 113 B PG4 4 2 PG4 PG4 114 B GOL 2 3 GOL GOL 115 B HOH 8 4 HOH HOH 115 A HOH 9 4 HOH HOH 116 A HOH 10 4 HOH HOH 117 A HOH 11 4 HOH HOH 118 A HOH 14 4 HOH HOH 119 A HOH 15 4 HOH HOH 120 A HOH 19 4 HOH HOH 121 A HOH 20 4 HOH HOH 122 A HOH 22 4 HOH HOH 123 A HOH 28 4 HOH HOH 124 A HOH 31 4 HOH HOH 125 A HOH 32 4 HOH HOH 126 A HOH 34 4 HOH HOH 127 A HOH 37 4 HOH HOH 128 A HOH 38 4 HOH HOH 129 A HOH 40 4 HOH HOH 130 A HOH 41 4 HOH HOH 131 A HOH 42 4 HOH HOH 132 A HOH 44 4 HOH HOH 133 A HOH 45 4 HOH HOH 134 A HOH 49 4 HOH HOH 135 A HOH 54 4 HOH HOH 136 A HOH 55 4 HOH HOH 137 A HOH 56 4 HOH HOH 138 A HOH 60 4 HOH HOH 139 A HOH 61 4 HOH HOH 140 A HOH 62 4 HOH HOH 141 A HOH 63 4 HOH HOH 142 A HOH 65 4 HOH HOH 143 A HOH 66 4 HOH HOH 144 A HOH 68 4 HOH HOH 145 A HOH 69 4 HOH HOH 146 A HOH 70 4 HOH HOH 147 A HOH 71 4 HOH HOH 148 A HOH 76 4 HOH HOH 149 A HOH 78 4 HOH HOH 150 A HOH 79 4 HOH HOH 151 A HOH 84 4 HOH HOH 152 A HOH 85 4 HOH HOH 153 A HOH 88 4 HOH HOH 154 A HOH 91 4 HOH HOH 155 A HOH 92 4 HOH HOH 156 A HOH 95 4 HOH HOH 157 A HOH 97 4 HOH HOH 158 A HOH 100 4 HOH HOH 159 A HOH 104 4 HOH HOH 160 A HOH 105 4 HOH HOH 161 A HOH 107 4 HOH HOH 162 A HOH 109 4 HOH HOH 163 A HOH 110 4 HOH HOH 164 A HOH 113 4 HOH HOH 165 A HOH 114 4 HOH HOH 166 A HOH 116 4 HOH HOH 167 A HOH 119 4 HOH HOH 168 A HOH 120 4 HOH HOH 169 A HOH 122 4 HOH HOH 170 A HOH 123 4 HOH HOH 171 A HOH 124 4 HOH HOH 172 A HOH 129 4 HOH HOH 173 A HOH 131 4 HOH HOH 174 A HOH 132 4 HOH HOH 175 A HOH 133 4 HOH HOH 176 A HOH 136 4 HOH HOH 177 A HOH 137 4 HOH HOH 178 A HOH 140 4 HOH HOH 179 A HOH 141 4 HOH HOH 180 A HOH 143 4 HOH HOH 181 A HOH 144 4 HOH HOH 182 A HOH 146 4 HOH HOH 183 A HOH 148 4 HOH HOH 184 A HOH 149 4 HOH HOH 185 A HOH 151 4 HOH HOH 186 A HOH 157 4 HOH HOH 187 A HOH 162 4 HOH HOH 188 A HOH 163 4 HOH HOH 189 A HOH 164 4 HOH HOH 190 A HOH 167 4 HOH HOH 191 A HOH 170 4 HOH HOH 192 A HOH 172 4 HOH HOH 193 A HOH 174 4 HOH HOH 194 A HOH 175 4 HOH HOH 195 A HOH 179 4 HOH HOH 196 A HOH 181 4 HOH HOH 197 A HOH 183 4 HOH HOH 198 A HOH 184 4 HOH HOH 199 A HOH 186 4 HOH HOH 200 A HOH 188 4 HOH HOH 201 A HOH 192 4 HOH HOH 202 A HOH 193 4 HOH HOH 203 A HOH 194 4 HOH HOH 204 A HOH 196 4 HOH HOH 205 A HOH 198 4 HOH HOH 206 A HOH 203 4 HOH HOH 207 A HOH 204 4 HOH HOH 208 A HOH 205 4 HOH HOH 209 A HOH 207 4 HOH HOH 210 A HOH 208 4 HOH HOH 211 A HOH 210 4 HOH HOH 212 A HOH 211 4 HOH HOH 213 A HOH 212 4 HOH HOH 214 A HOH 213 4 HOH HOH 215 A HOH 214 4 HOH HOH 216 A HOH 215 4 HOH HOH 217 A HOH 216 4 HOH HOH 218 A HOH 218 4 HOH HOH 219 A HOH 219 4 HOH HOH 220 A HOH 220 4 HOH HOH 221 A HOH 221 4 HOH HOH 222 A HOH 224 4 HOH HOH 223 A HOH 6 4 HOH HOH 116 B HOH 7 4 HOH HOH 117 B HOH 12 4 HOH HOH 118 B HOH 13 4 HOH HOH 119 B HOH 16 4 HOH HOH 120 B HOH 17 4 HOH HOH 121 B HOH 18 4 HOH HOH 122 B HOH 21 4 HOH HOH 123 B HOH 23 4 HOH HOH 124 B HOH 24 4 HOH HOH 125 B HOH 25 4 HOH HOH 126 B HOH 26 4 HOH HOH 127 B HOH 27 4 HOH HOH 128 B HOH 29 4 HOH HOH 129 B HOH 30 4 HOH HOH 130 B HOH 33 4 HOH HOH 131 B HOH 35 4 HOH HOH 132 B HOH 36 4 HOH HOH 133 B HOH 39 4 HOH HOH 134 B HOH 43 4 HOH HOH 135 B HOH 46 4 HOH HOH 136 B HOH 47 4 HOH HOH 137 B HOH 48 4 HOH HOH 138 B HOH 50 4 HOH HOH 139 B HOH 51 4 HOH HOH 140 B HOH 52 4 HOH HOH 141 B HOH 53 4 HOH HOH 142 B HOH 57 4 HOH HOH 143 B HOH 58 4 HOH HOH 144 B HOH 59 4 HOH HOH 145 B HOH 64 4 HOH HOH 146 B HOH 67 4 HOH HOH 147 B HOH 72 4 HOH HOH 148 B HOH 73 4 HOH HOH 149 B HOH 74 4 HOH HOH 150 B HOH 75 4 HOH HOH 151 B HOH 77 4 HOH HOH 152 B HOH 80 4 HOH HOH 153 B HOH 81 4 HOH HOH 154 B HOH 82 4 HOH HOH 155 B HOH 83 4 HOH HOH 156 B HOH 86 4 HOH HOH 157 B HOH 87 4 HOH HOH 158 B HOH 89 4 HOH HOH 159 B HOH 90 4 HOH HOH 160 B HOH 93 4 HOH HOH 161 B HOH 94 4 HOH HOH 162 B HOH 96 4 HOH HOH 163 B HOH 98 4 HOH HOH 164 B HOH 99 4 HOH HOH 165 B HOH 101 4 HOH HOH 166 B HOH 102 4 HOH HOH 167 B HOH 103 4 HOH HOH 168 B HOH 106 4 HOH HOH 169 B HOH 108 4 HOH HOH 170 B HOH 111 4 HOH HOH 171 B HOH 112 4 HOH HOH 172 B HOH 115 4 HOH HOH 173 B HOH 117 4 HOH HOH 174 B HOH 118 4 HOH HOH 175 B HOH 121 4 HOH HOH 176 B HOH 125 4 HOH HOH 177 B HOH 126 4 HOH HOH 178 B HOH 127 4 HOH HOH 179 B HOH 128 4 HOH HOH 180 B HOH 130 4 HOH HOH 181 B HOH 134 4 HOH HOH 182 B HOH 135 4 HOH HOH 183 B HOH 138 4 HOH HOH 184 B HOH 139 4 HOH HOH 185 B HOH 142 4 HOH HOH 186 B HOH 145 4 HOH HOH 187 B HOH 147 4 HOH HOH 188 B HOH 150 4 HOH HOH 189 B HOH 152 4 HOH HOH 190 B HOH 153 4 HOH HOH 191 B HOH 154 4 HOH HOH 192 B HOH 155 4 HOH HOH 193 B HOH 156 4 HOH HOH 194 B HOH 158 4 HOH HOH 195 B HOH 159 4 HOH HOH 196 B HOH 160 4 HOH HOH 197 B HOH 161 4 HOH HOH 198 B HOH 165 4 HOH HOH 199 B HOH 166 4 HOH HOH 200 B HOH 168 4 HOH HOH 201 B HOH 169 4 HOH HOH 202 B HOH 171 4 HOH HOH 203 B HOH 173 4 HOH HOH 204 B HOH 176 4 HOH HOH 205 B HOH 177 4 HOH HOH 206 B HOH 178 4 HOH HOH 207 B HOH 180 4 HOH HOH 208 B HOH 182 4 HOH HOH 209 B HOH 185 4 HOH HOH 210 B HOH 187 4 HOH HOH 211 B HOH 189 4 HOH HOH 212 B HOH 190 4 HOH HOH 213 B HOH 191 4 HOH HOH 214 B HOH 195 4 HOH HOH 215 B HOH 197 4 HOH HOH 216 B HOH 199 4 HOH HOH 217 B HOH 200 4 HOH HOH 218 B HOH 201 4 HOH HOH 219 B HOH 202 4 HOH HOH 220 B HOH 206 4 HOH HOH 221 B HOH 209 4 HOH HOH 222 B HOH 217 4 HOH HOH 223 B HOH 222 4 HOH HOH 224 B HOH 223 4 HOH HOH 225 B n 1 0 A n 2 1 A n 3 2 A n 4 3 A n 5 4 A n 6 5 A n 7 6 A n 8 7 A GLY 8 n 9 GLY 8 A ALA 9 n 10 ALA 9 A VAL 10 n 11 VAL 10 A ASP 11 n 12 ASP 11 A PHE 12 n 13 PHE 12 A ALA 13 n 14 ALA 13 A TYR 14 n 15 TYR 14 A LEU 15 n 16 LEU 15 A GLU 16 n 17 GLU 16 A GLY 17 n 18 GLY 17 A PHE 18 n 19 PHE 18 A ALA 19 n 20 ALA 19 A ALA 20 n 21 ALA 20 A GLY 21 n 22 GLY 21 A ASP 22 n 23 ASP 22 A PHE 23 n 24 PHE 23 A ALA 24 n 25 ALA 24 A VAL 25 n 26 VAL 25 A VAL 26 n 27 VAL 26 A ASP 27 n 28 ASP 27 A GLU 28 n 29 GLU 28 A VAL 29 n 30 VAL 29 A LEU 30 n 31 LEU 30 A ALA 31 n 32 ALA 31 A LEU 32 n 33 LEU 32 A PHE 33 n 34 PHE 33 A ARG 34 n 35 ARG 34 A GLU 35 n 36 GLU 35 A GLN 36 n 37 GLN 36 A ALA 37 n 38 ALA 37 A ALA 38 n 39 ALA 38 A LEU 39 n 40 LEU 39 A TRP 40 n 41 TRP 40 A ALA 41 n 42 ALA 41 A PRO 42 n 43 PRO 42 A MSE 43 n 44 MSE 43 A LEU 44 n 45 LEU 44 A ASP 45 n 46 ASP 45 A PRO 46 n 47 PRO 46 A THR 47 n 48 THR 47 A HIS 48 n 49 HIS 48 A PRO 49 n 50 PRO 49 A GLY 50 n 51 GLY 50 A TRP 51 n 52 TRP 51 A LYS 52 n 53 LYS 52 A ASP 53 n 54 ASP 53 A ALA 54 n 55 ALA 54 A VAL 55 n 56 VAL 55 A HIS 56 n 57 HIS 56 A THR 57 n 58 THR 57 A VAL 58 n 59 VAL 58 A LYS 59 n 60 LYS 59 A GLY 60 n 61 GLY 60 A ALA 61 n 62 ALA 61 A ALA 62 n 63 ALA 62 A ARG 63 n 64 ARG 63 A GLY 64 n 65 GLY 64 A VAL 65 n 66 VAL 65 A GLY 66 n 67 GLY 66 A ALA 67 n 68 ALA 67 A PHE 68 n 69 PHE 68 A ASN 69 n 70 ASN 69 A LEU 70 n 71 LEU 70 A GLY 71 n 72 GLY 71 A GLU 72 n 73 GLU 72 A VAL 73 n 74 VAL 73 A CYS 74 n 75 CYS 74 A GLU 75 n 76 GLU 75 A ARG 76 n 77 ARG 76 A CYS 77 n 78 CYS 77 A GLU 78 n 79 GLU 78 A ALA 79 n 80 ALA 79 A GLY 80 n 81 GLY 80 A GLN 81 n 82 GLN 81 A GLU 82 n 83 GLU 82 A SER 83 n 84 SER 83 A LEU 84 n 85 LEU 84 A GLU 85 n 86 GLU 85 A GLY 86 n 87 GLY 86 A VAL 87 n 88 VAL 87 A ARG 88 n 89 ARG 88 A THR 89 n 90 THR 89 A ALA 90 n 91 ALA 90 A LEU 91 n 92 LEU 91 A ASP 92 n 93 ASP 92 A ALA 93 n 94 ALA 93 A ALA 94 n 95 ALA 94 A LEU 95 n 96 LEU 95 A LEU 96 n 97 LEU 96 A ASP 97 n 98 ASP 97 A ILE 98 n 99 ILE 98 A ALA 99 n 100 ALA 99 A ALA 100 n 101 ALA 100 A TYR 101 n 102 TYR 101 A ALA 102 n 103 ALA 102 A HIS 103 n 104 HIS 103 A GLU 104 n 105 GLU 104 A GLN 105 n 106 GLN 105 A ALA 106 n 107 ALA 106 A LEU 107 n 108 LEU 107 A ARG 108 n 109 ARG 108 A SER 109 n 110 SER 109 A LEU 110 n 111 LEU 110 A LYS 111 n 112 LYS 111 A n 113 112 A n 1 0 B n 2 1 B n 3 2 B n 4 3 B n 5 4 B n 6 5 B n 7 6 B n 8 7 B GLY 8 n 9 GLY 8 B ALA 9 n 10 ALA 9 B VAL 10 n 11 VAL 10 B ASP 11 n 12 ASP 11 B PHE 12 n 13 PHE 12 B ALA 13 n 14 ALA 13 B TYR 14 n 15 TYR 14 B LEU 15 n 16 LEU 15 B GLU 16 n 17 GLU 16 B GLY 17 n 18 GLY 17 B PHE 18 n 19 PHE 18 B ALA 19 n 20 ALA 19 B ALA 20 n 21 ALA 20 B GLY 21 n 22 GLY 21 B ASP 22 n 23 ASP 22 B PHE 23 n 24 PHE 23 B ALA 24 n 25 ALA 24 B VAL 25 n 26 VAL 25 B VAL 26 n 27 VAL 26 B ASP 27 n 28 ASP 27 B GLU 28 n 29 GLU 28 B VAL 29 n 30 VAL 29 B LEU 30 n 31 LEU 30 B ALA 31 n 32 ALA 31 B LEU 32 n 33 LEU 32 B PHE 33 n 34 PHE 33 B ARG 34 n 35 ARG 34 B GLU 35 n 36 GLU 35 B GLN 36 n 37 GLN 36 B ALA 37 n 38 ALA 37 B ALA 38 n 39 ALA 38 B LEU 39 n 40 LEU 39 B TRP 40 n 41 TRP 40 B ALA 41 n 42 ALA 41 B PRO 42 n 43 PRO 42 B MSE 43 n 44 MSE 43 B LEU 44 n 45 LEU 44 B ASP 45 n 46 ASP 45 B PRO 46 n 47 PRO 46 B THR 47 n 48 THR 47 B HIS 48 n 49 HIS 48 B PRO 49 n 50 PRO 49 B GLY 50 n 51 GLY 50 B TRP 51 n 52 TRP 51 B LYS 52 n 53 LYS 52 B ASP 53 n 54 ASP 53 B ALA 54 n 55 ALA 54 B VAL 55 n 56 VAL 55 B HIS 56 n 57 HIS 56 B THR 57 n 58 THR 57 B VAL 58 n 59 VAL 58 B LYS 59 n 60 LYS 59 B GLY 60 n 61 GLY 60 B ALA 61 n 62 ALA 61 B ALA 62 n 63 ALA 62 B ARG 63 n 64 ARG 63 B GLY 64 n 65 GLY 64 B VAL 65 n 66 VAL 65 B GLY 66 n 67 GLY 66 B ALA 67 n 68 ALA 67 B PHE 68 n 69 PHE 68 B ASN 69 n 70 ASN 69 B LEU 70 n 71 LEU 70 B GLY 71 n 72 GLY 71 B GLU 72 n 73 GLU 72 B VAL 73 n 74 VAL 73 B CYS 74 n 75 CYS 74 B GLU 75 n 76 GLU 75 B ARG 76 n 77 ARG 76 B CYS 77 n 78 CYS 77 B GLU 78 n 79 GLU 78 B ALA 79 n 80 ALA 79 B GLY 80 n 81 GLY 80 B GLN 81 n 82 GLN 81 B GLU 82 n 83 GLU 82 B SER 83 n 84 SER 83 B LEU 84 n 85 LEU 84 B GLU 85 n 86 GLU 85 B GLY 86 n 87 GLY 86 B VAL 87 n 88 VAL 87 B ARG 88 n 89 ARG 88 B THR 89 n 90 THR 89 B ALA 90 n 91 ALA 90 B LEU 91 n 92 LEU 91 B ASP 92 n 93 ASP 92 B ALA 93 n 94 ALA 93 B ALA 94 n 95 ALA 94 B LEU 95 n 96 LEU 95 B LEU 96 n 97 LEU 96 B ASP 97 n 98 ASP 97 B ILE 98 n 99 ILE 98 B ALA 99 n 100 ALA 99 B ALA 100 n 101 ALA 100 B TYR 101 n 102 TYR 101 B ALA 102 n 103 ALA 102 B HIS 103 n 104 HIS 103 B GLU 104 n 105 GLU 104 B GLN 105 n 106 GLN 105 B ALA 106 n 107 ALA 106 B LEU 107 n 108 LEU 107 B ARG 108 n 109 ARG 108 B SER 109 n 110 SER 109 B LEU 110 n 111 LEU 110 B LYS 111 n 112 LYS 111 B GLY 112 n 113 GLY 112 B 1.9888 -0.7866 -0.6149 0.4627 0.5752 0.9294 -0.0353 -0.0212 -0.0982 -0.1444 0.0697 -0.0570 -0.1103 -0.0085 -0.0345 -0.0259 -0.0286 0.0089 -0.0153 -0.0036 0.0059 refined 34.0090 27.7910 0.8930 X-RAY DIFFRACTION 0.8997 0.1368 -0.1592 1.8964 -0.9850 2.5444 0.0047 -0.1855 0.0389 0.1681 0.1512 0.0902 -0.1974 -0.2762 -0.1559 -0.0683 0.0269 0.0135 0.0270 -0.0023 0.0163 refined 41.0550 37.6280 20.6040 X-RAY DIFFRACTION A 8 A 9 A 111 A 112 X-RAY DIFFRACTION 1 ALL B 8 B 9 B 112 B 113 X-RAY DIFFRACTION 2 ALL author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric A MSE 43 SELENOMETHIONINE A MSE 44 MET B MSE 43 SELENOMETHIONINE B MSE 44 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CD GLU 72 A CD GLU 73 1 Y 1 A OE1 GLU 72 A OE1 GLU 73 1 Y 1 A OE2 GLU 72 A OE2 GLU 73 1 Y 1 A OE1 GLU 75 A OE1 GLU 76 1 Y 1 A OE2 GLU 75 A OE2 GLU 76 1 Y 1 A CG ARG 108 A CG ARG 109 1 Y 1 A CD ARG 108 A CD ARG 109 1 Y 1 A NE ARG 108 A NE ARG 109 1 Y 1 A CZ ARG 108 A CZ ARG 109 1 Y 1 A NH1 ARG 108 A NH1 ARG 109 1 Y 1 A NH2 ARG 108 A NH2 ARG 109 1 Y 1 A C6 PG4 113 C C6 PG4 1 1 N 1 A O4 PG4 113 C O4 PG4 1 1 N 1 A C7 PG4 113 C C7 PG4 1 1 N 1 A C8 PG4 113 C C8 PG4 1 1 N 1 A O5 PG4 113 C O5 PG4 1 1 N 1 B C7 PG4 113 E C7 PG4 1 1 N 1 B C8 PG4 113 E C8 PG4 1 1 N 1 B O5 PG4 113 E O5 PG4 1 1 N 1 B C5 PG4 114 F C5 PG4 1 1 N 1 B C6 PG4 114 F C6 PG4 1 1 N 1 B O4 PG4 114 F O4 PG4 1 1 N 1 B C7 PG4 114 F C7 PG4 1 1 N 1 B C8 PG4 114 F C8 PG4 1 1 N 1 B O5 PG4 114 F O5 PG4 1 1 N 1 A GLY 0 A GLY 1 1 Y 1 A MSE 1 A MSE 2 1 Y 1 A ALA 2 A ALA 3 1 Y 1 A ARG 3 A ARG 4 1 Y 1 A ARG 4 A ARG 5 1 Y 1 A ASP 5 A ASP 6 1 Y 1 A ILE 6 A ILE 7 1 Y 1 A SER 7 A SER 8 1 Y 1 A GLY 112 A GLY 113 1 Y 1 B GLY 0 B GLY 1 1 Y 1 B MSE 1 B MSE 2 1 Y 1 B ALA 2 B ALA 3 1 Y 1 B ARG 3 B ARG 4 1 Y 1 B ARG 4 B ARG 5 1 Y 1 B ASP 5 B ASP 6 1 Y 1 B ILE 6 B ILE 7 1 Y 1 B SER 7 B SER 8 1 Y 1 A A NE2 O GLN HOH 36 185 2.15 1 A A O O HOH HOH 187 203 2.19 22.111 1.120 0.560 0.000 1.120 0.000 -1.670 0.975 0.961 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. PG4 AND GOL ARE MODELED BASED ON THE CRYSTALLIZATION CONDITIONS. 5. B21 HAS POORLY DEFINED ELECTRON DENSITY. RESIDUES 0-7 IN BOTH CHAINS (A AND B) ARE DISORDERED. 0.202 0.166 0.168 0.168 1.52 28.89 2051 40897 5.000 99.900 3.072 0.054 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 MAD 0.063 0.069 0.800 0.800 1.200 MAXIMUM LIKELIHOOD WITH PHASES BABINET MODEL WITH MASK 1.52 28.89 219 1803 37 0 1547 0.018 0.022 1702 0.009 0.020 1131 1.704 1.958 2315 1.047 3.000 2762 4.608 5.000 232 36.183 24.198 81 13.712 15.000 255 11.333 15.000 11 0.114 0.200 251 0.008 0.020 1965 0.001 0.020 358 0.230 0.200 400 0.191 0.200 1161 0.188 0.200 859 0.092 0.200 856 0.193 0.200 157 0.087 0.200 9 0.300 0.200 32 0.204 0.200 11 2.352 3.000 1153 0.588 3.000 444 3.037 5.000 1682 5.298 8.000 694 7.786 11.000 620 1 A 1 1157 X-RAY DIFFRACTION LOOSE POSITIONAL 1.120 5.000 1 A 1 1157 X-RAY DIFFRACTION LOOSE THERMAL 3.280 10.000 0.282 0.263 1.56 163 2778 2941 20 98.660 23.88 1.52 28.89 2OOC 40951 0.068 0.068 1,2 6.200 6.900 100.000 0.811 1.52 1.56 0.9 15275 2993 0.811 1,2 5.10 100.00 0.649 1.56 1.60 1.2 14959 2895 0.649 1,2 5.20 100.00 0.501 1.60 1.65 1.5 14716 2823 0.501 1,2 5.20 100.00 0.381 1.65 1.70 2.0 14415 2736 0.381 1,2 5.30 100.00 0.333 1.70 1.76 2.3 14377 2695 0.333 1,2 5.30 100.00 0.247 1.76 1.82 3.1 13754 2557 0.247 1,2 5.40 100.00 0.198 1.82 1.89 3.8 13660 2521 0.198 1,2 5.40 100.00 0.159 1.89 1.96 4.6 12989 2406 0.159 1,2 5.40 100.00 0.123 1.96 2.05 5.6 12474 2288 0.123 1,2 5.50 100.00 0.103 2.05 2.15 6.5 12122 2242 0.103 1,2 5.40 100.00 0.123 2.15 2.27 5.0 14182 2111 0.123 1,2 6.70 100.00 0.128 2.27 2.40 5.2 18938 2012 0.128 1,2 9.40 100.00 0.108 2.40 2.57 6.0 20388 1878 0.108 1,2 10.90 100.00 0.087 2.57 2.78 7.6 19205 1766 0.087 1,2 10.90 100.00 0.07 2.78 3.04 9.2 17848 1638 0.07 1,2 10.90 100.00 0.061 3.04 3.40 10.1 15972 1486 0.061 1,2 10.70 100.00 0.051 3.40 3.92 11.2 14153 1329 0.051 1,2 10.60 100.00 0.051 3.92 4.81 11.6 11819 1141 0.051 1,2 10.40 100.00 0.05 4.81 6.80 12.4 8923 897 0.05 1,2 9.90 100.00 0.045 6.80 28.94 12.5 4143 537 0.045 1,2 7.70 98.70 model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 phasing George Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program 5.2.0019 data scaling Phil Evans pre@mrc-lmb.cam.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/INDEX.html SCALA other data extraction PDB sw-help@rcsb.rutgers.edu April. 3, 2006 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 2.000 data collection MAR345 CCD data reduction MOSFLM data scaling CCP4 (SCALA) phasing SHELXD phasing autoSHARP Crystal structure of Histidine Phosphotransferase ShpA (NP_419930.1) from Caulobacter crescentus at 1.52 A resolution 1 N N 1 N N 2 N N 3 N N 2 N N 2 N N 3 N N 4 N N 4 N N A ASP 11 A ASP 12 HELX_P A ALA 19 A ALA 20 1 1 9 A ASP 22 A ASP 23 HELX_P A ALA 41 A ALA 42 1 2 20 A PRO 42 A PRO 43 HELX_P A LEU 44 A LEU 45 5 3 3 A GLY 50 A GLY 51 HELX_P A GLY 66 A GLY 67 1 4 17 A ALA 67 A ALA 68 HELX_P A ALA 79 A ALA 80 1 5 13 A SER 83 A SER 84 HELX_P A LYS 111 A LYS 112 1 6 29 B ASP 11 B ASP 12 HELX_P B GLY 17 B GLY 18 1 7 7 B PHE 23 B PHE 24 HELX_P B LEU 44 B LEU 45 1 8 22 B GLY 50 B GLY 51 HELX_P B GLY 66 B GLY 67 1 9 17 B ALA 67 B ALA 68 HELX_P B ALA 79 B ALA 80 1 10 13 B SER 83 B SER 84 HELX_P B GLY 112 B GLY 113 1 11 30 covale 1.329 both A PRO 42 A C PRO 43 1_555 A MSE 43 A N MSE 44 1_555 covale 1.343 both A MSE 43 A C MSE 44 1_555 A LEU 44 A N LEU 45 1_555 covale 1.343 both B PRO 42 B C PRO 43 1_555 B MSE 43 B N MSE 44 1_555 covale 1.330 both B MSE 43 B C MSE 44 1_555 B LEU 44 B N LEU 45 1_555 TRANSFERASE NP_419930.1, hypothetical protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, TRANSFERASE A B A 8 A GLY 9 A 111 A LYS 112 6 B 8 B GLY 9 B 112 B GLY 113 6 A0EJF9_CAUCR UNP 1 1 A0EJF9 MARRDISGAVDFAYLEGFAAGDFAVVDEVLALFREQAALWAPMLDPTHPGWKDAVHTVKGAARGVGAFNLGEVCERCEAG QESLEGVRTALDAALLDIAAYAHEQALRSLKG 1 112 2OOC 1 112 A0EJF9 A 1 2 113 1 112 2OOC 1 112 A0EJF9 B 1 2 113 1 expression tag GLY 0 2OOC A A0EJF9 UNP 1 1 MET modified residue MSE 1 2OOC A A0EJF9 UNP 1 2 1 MET modified residue MSE 43 2OOC A A0EJF9 UNP 43 44 2 expression tag GLY 0 2OOC B A0EJF9 UNP 1 2 MET modified residue MSE 1 2OOC B A0EJF9 UNP 1 2 2 MET modified residue MSE 43 2OOC B A0EJF9 UNP 43 44 BINDING SITE FOR RESIDUE PG4 B 113 B PG4 113 Software 7 BINDING SITE FOR RESIDUE PG4 B 114 B PG4 114 Software 5 BINDING SITE FOR RESIDUE PG4 A 113 A PG4 113 Software 5 BINDING SITE FOR RESIDUE GOL A 114 A GOL 114 Software 7 BINDING SITE FOR RESIDUE GOL B 115 B GOL 115 Software 4 A HIS 48 A HIS 49 7 4_655 A PRO 49 A PRO 50 7 4_655 B LYS 52 B LYS 53 7 1_555 B CYS 77 B CYS 78 7 1_555 B GLU 78 B GLU 79 7 1_555 B PG4 114 F PG4 7 1_555 B HOH 223 I HOH 7 1_555 A MSE 43 A MSE 44 5 4_655 B PRO 46 B PRO 47 5 1_555 B PRO 49 B PRO 50 5 1_555 B TRP 51 B TRP 52 5 1_555 B PG4 113 E PG4 5 1_555 A PRO 46 A PRO 47 5 1_555 A TRP 51 A TRP 52 5 1_555 A GLY 80 A GLY 81 5 1_555 A GLU 82 A GLU 83 5 1_555 A LEU 84 A LEU 85 5 1_555 A PRO 46 A PRO 47 7 1_555 A SER 83 A SER 84 7 1_555 A LEU 84 A LEU 85 7 1_555 A GLU 85 A GLU 86 7 1_555 A ARG 88 A ARG 89 7 1_555 A HOH 130 H HOH 7 1_555 A HOH 176 H HOH 7 1_555 A ASP 53 A ASP 54 4 4_655 B ARG 88 B ARG 89 4 1_555 B HOH 138 I HOH 4 1_555 B HOH 224 I HOH 4 1_555 154 P 32 2 1