1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Meier, S.
Oezbek, S.
Grzesiek, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
R
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
S
N
47
N
O
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
N
N
56
S
C
N
57
N
C
N
58
N
O
N
59
N
C
N
60
N
C
N
61
N
C
N
62
N
O
N
63
N
N
N
64
N
O
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
N
N
76
N
C
N
77
N
C
N
78
N
O
N
79
N
O
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
N
N
86
S
C
N
87
N
C
N
88
N
O
N
89
N
C
N
90
N
C
N
91
N
S
N
92
N
C
N
93
N
O
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
N
N
106
S
C
N
107
N
C
N
108
N
O
N
109
N
C
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
S
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
O
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
376
1008
1020
10.1016/j.jmb.2007.10.090
18206162
Minicollagen-15, a novel minicollagen isolated from Hydra, forms tubule structures in nematocysts.
2008
10.2210/pdb2oq9/pdb
pdb_00002oq9
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
2363.822
Minicollagen-5
1
syn
polymer
no
no
APMQAPVQAAPACMASCAPQCCGR
APMQAPVQAAPACMASCAPQCCGR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Data collection
1
0
2007-12-18
1
1
2011-07-13
1
2
2022-03-16
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2007-01-31
REL
REL
wild type sequence obtained by solid phase synthesis and oxidative refolding
sample
This structure was determined using standard 2D homonuclear and weak alignment techniques.
structures with the lowest energy
100
10
2D NOESY
2D NOESY
HSQC
IPAP
10 mM
4.5
ambient
288
K
55 mM
5.5
ambient
288
K
use of RDCs with the ISAC procedure, no a priori knowledge of the alignment tensor
simulated annealing
1
lowest energy
4 mM peptide; 95% H2O, 5% D2O
95% H2O/5% D2O
3 mM peptide, 10 mg/ml Pf1 phage; 95% H2O, 5% D2O
95% H2O/5% D2O
Brunger A. T. et al
structure solution
CNS
1.0
Delaglio et al
processing
NMRPipe
2.1
Garrett
data analysis
PIPP
4.3.2
Bruker
collection
XwinNMR
3.5
Brunger A. T. et al
refinement
CNS
1.0
800
Bruker
DRX
600
Bruker
DRX
ALA
1
n
1
ALA
1
A
PRO
2
n
2
PRO
2
A
MET
3
n
3
MET
3
A
GLN
4
n
4
GLN
4
A
ALA
5
n
5
ALA
5
A
PRO
6
n
6
PRO
6
A
VAL
7
n
7
VAL
7
A
GLN
8
n
8
GLN
8
A
ALA
9
n
9
ALA
9
A
ALA
10
n
10
ALA
10
A
PRO
11
n
11
PRO
11
A
ALA
12
n
12
ALA
12
A
CYS
13
n
13
CYS
13
A
MET
14
n
14
MET
14
A
ALA
15
n
15
ALA
15
A
SER
16
n
16
SER
16
A
CYS
17
n
17
CYS
17
A
ALA
18
n
18
ALA
18
A
PRO
19
n
19
PRO
19
A
GLN
20
n
20
GLN
20
A
CYS
21
n
21
CYS
21
A
CYS
22
n
22
CYS
22
A
GLY
23
n
23
GLY
23
A
ARG
24
n
24
ARG
24
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
PRO
19
-97.46
30.84
2
A
PRO
19
-97.43
30.93
3
A
PRO
19
-97.19
30.76
4
A
PRO
19
-97.45
31.41
5
A
MET
3
-56.80
107.72
5
A
GLN
4
-82.24
-155.84
5
A
PRO
6
-29.07
141.33
5
A
VAL
7
-35.04
120.20
5
A
PRO
19
-97.32
31.05
6
A
PRO
6
-30.32
138.89
6
A
CYS
21
-67.91
1.57
7
A
GLN
4
51.38
176.03
7
A
PRO
19
-97.27
31.03
8
A
PRO
6
-67.69
59.67
8
A
PRO
19
-97.40
31.13
8
A
CYS
21
-68.63
0.04
9
A
CYS
21
-67.10
0.24
10
A
PRO
6
-32.03
138.42
10
A
PRO
19
-97.21
30.63
Structure of the non-canonical Mcol5 of Hydra nematocysts
1
N
N
disulf
2.022
A
CYS
13
A
SG
CYS
13
1_555
A
CYS
22
A
SG
CYS
22
1_555
disulf
2.028
A
CYS
17
A
SG
CYS
17
1_555
A
CYS
21
A
SG
CYS
21
1_555
STRUCTURAL PROTEIN
disulfide, cis-proline, nematocyst, non-canonical CRD, cysteine-rich domain, STRUCTURAL PROTEIN
A
ALA
18
A
ALA
18
1
A
PRO
19
A
PRO
19
1.90
A
ALA
18
A
ALA
18
2
A
PRO
19
A
PRO
19
1.97
A
ALA
18
A
ALA
18
3
A
PRO
19
A
PRO
19
2.01
A
ALA
18
A
ALA
18
4
A
PRO
19
A
PRO
19
1.96
A
ALA
18
A
ALA
18
5
A
PRO
19
A
PRO
19
2.07
A
ALA
18
A
ALA
18
6
A
PRO
19
A
PRO
19
2.35
A
ALA
18
A
ALA
18
7
A
PRO
19
A
PRO
19
1.97
A
ALA
18
A
ALA
18
8
A
PRO
19
A
PRO
19
2.07
A
ALA
18
A
ALA
18
9
A
PRO
19
A
PRO
19
2.19
A
ALA
18
A
ALA
18
10
A
PRO
19
A
PRO
19
2.05
2OQ9
PDB
1
2OQ9
1
24
2OQ9
1
24
2OQ9
A
1
1
24