0.009055
0.000000
0.002483
0.000000
0.010073
0.000000
0.000000
0.000000
0.012023
0.000000
0.000000
0.000000
Shuman, S.
Nandakumar, J.
Nair, P.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
105.330
90.000
110.441
99.273
86.245
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C10 H14 N5 O7 P
347.221
ADENOSINE MONOPHOSPHATE
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C10 H16 N3 O8 P
337.223
n
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
RNA linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
P
N
15
N
O
N
16
N
O
N
17
N
O
N
18
N
O
N
19
N
C
N
20
R
C
N
21
N
O
N
22
S
C
N
23
N
O
N
24
R
C
N
25
N
O
N
26
R
C
Y
27
N
N
Y
28
N
C
Y
29
N
N
Y
30
N
C
Y
31
N
C
N
32
N
N
Y
33
N
N
Y
34
N
C
Y
35
N
N
Y
36
N
C
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
R
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
S
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
O
N
126
N
P
N
127
N
O
N
128
N
O
N
129
N
O
N
130
N
C
N
131
R
C
N
132
N
O
N
133
S
C
N
134
N
O
N
135
N
C
N
136
R
C
Y
137
N
N
Y
138
N
C
Y
139
N
N
Y
140
N
C
Y
141
N
C
N
142
N
N
Y
143
N
N
Y
144
N
C
Y
145
N
N
Y
146
N
C
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
O
N
162
N
P
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
C
N
167
R
C
N
168
N
O
N
169
S
C
N
170
N
O
N
171
N
C
N
172
R
C
N
173
N
N
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
C
N
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
Y
207
N
N
Y
208
N
C
Y
209
N
N
Y
210
N
C
N
211
N
C
N
212
N
O
N
213
N
N
N
214
N
C
N
215
N
N
N
216
N
N
Y
217
N
C
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
O
N
233
N
P
N
234
N
O
N
235
N
O
N
236
N
O
N
237
N
C
N
238
R
C
N
239
N
O
N
240
S
C
N
241
N
O
N
242
N
C
N
243
R
C
N
244
N
N
N
245
N
C
N
246
N
O
N
247
N
N
N
248
N
C
N
249
N
O
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
N
N
269
S
C
N
270
N
C
N
271
N
O
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
O
N
276
N
N
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
N
N
289
S
C
N
290
N
C
N
291
N
O
N
292
N
C
N
293
N
C
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
N
C
N
309
N
C
N
310
N
O
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
S
C
N
319
N
C
N
320
N
O
N
321
N
C
Y
322
N
C
Y
323
N
N
Y
324
N
C
Y
325
N
C
Y
326
N
N
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
S
C
N
346
N
C
N
347
N
C
N
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
N
368
N
C
N
369
N
C
N
370
N
C
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
N
C
N
390
N
C
N
391
N
C
N
392
N
C
N
393
N
N
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
N
415
N
C
N
416
N
S
N
417
N
C
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
N
C
N
432
N
N
N
433
N
C
N
434
N
C
N
435
N
C
N
436
N
O
N
437
N
N
N
438
R
C
N
439
R
C
N
440
N
O
N
441
N
C
N
442
R
C
N
443
R
C
N
444
N
O
N
445
N
O
N
446
N
C
N
447
N
O
N
448
N
P
N
449
N
O
N
450
N
O
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
N
N
469
S
C
N
470
N
C
N
471
N
O
N
472
N
C
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
N
479
N
O
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
N
N
492
S
C
N
493
N
C
N
494
N
O
N
495
N
C
N
496
N
C
N
497
N
C
N
498
N
O
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
N
N
509
S
C
N
510
N
C
N
511
N
O
N
512
N
C
N
513
N
O
N
514
N
O
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
S
N
523
N
O
N
524
N
O
N
525
N
O
N
526
N
O
N
527
N
N
N
528
S
C
N
529
N
C
N
530
N
O
N
531
R
C
N
532
N
O
N
533
N
C
N
534
N
O
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
N
N
545
S
C
N
546
N
C
N
547
N
O
N
548
N
C
Y
549
N
C
Y
550
N
C
Y
551
N
C
Y
552
N
N
Y
553
N
C
Y
554
N
C
Y
555
N
C
Y
556
N
C
Y
557
N
C
N
558
N
O
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
N
N
572
S
C
N
573
N
C
N
574
N
O
N
575
N
C
Y
576
N
C
Y
577
N
C
Y
578
N
C
Y
579
N
C
Y
580
N
C
Y
581
N
C
N
582
N
O
N
583
N
O
N
584
N
H
N
585
N
H
N
586
N
H
N
587
N
H
N
588
N
H
N
589
N
H
N
590
N
H
N
591
N
H
N
592
N
H
N
593
N
H
N
594
N
H
N
595
N
N
N
596
S
C
N
597
N
C
N
598
N
O
N
599
N
C
N
600
N
C
N
601
N
C
N
602
N
O
N
603
N
H
N
604
N
H
N
605
N
H
N
606
N
H
N
607
N
H
N
608
N
H
N
609
N
H
N
610
N
H
N
611
N
H
N
612
N
H
N
613
N
H
N
614
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
Y
37
N
sing
Y
38
N
sing
Y
39
N
doub
N
40
N
sing
Y
41
N
sing
Y
42
N
sing
Y
43
N
doub
N
44
N
sing
Y
45
N
doub
N
46
N
sing
N
47
N
sing
Y
48
N
sing
Y
49
N
doub
N
50
N
sing
Y
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
Y
145
N
sing
Y
146
N
sing
Y
147
N
doub
N
148
N
sing
Y
149
N
sing
Y
150
N
sing
Y
151
N
doub
N
152
N
sing
Y
153
N
doub
N
154
N
sing
N
155
N
sing
Y
156
N
sing
Y
157
N
doub
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
Y
218
N
sing
Y
219
N
sing
Y
220
N
doub
N
221
N
sing
Y
222
N
sing
N
223
N
sing
Y
224
N
doub
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
Y
328
N
sing
Y
329
N
doub
Y
330
N
doub
N
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
doub
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
doub
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
doub
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
Y
475
N
doub
Y
476
N
sing
Y
477
N
sing
N
478
N
sing
Y
479
N
doub
N
480
N
sing
Y
481
N
doub
N
482
N
sing
Y
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
doub
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
doub
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
doub
N
518
N
doub
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
doub
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
doub
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
Y
548
N
doub
Y
549
N
sing
Y
550
N
sing
N
551
N
sing
Y
552
N
doub
Y
553
N
sing
Y
554
N
sing
N
555
N
sing
Y
556
N
sing
Y
557
N
doub
N
558
N
sing
Y
559
N
doub
N
560
N
sing
Y
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
doub
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
Y
576
N
doub
Y
577
N
sing
Y
578
N
sing
N
579
N
sing
Y
580
N
doub
N
581
N
sing
Y
582
N
doub
N
583
N
sing
Y
584
N
sing
N
585
N
sing
N
586
N
sing
N
587
N
sing
N
588
N
sing
N
589
N
sing
N
590
N
sing
N
591
N
sing
N
592
N
sing
N
593
N
sing
N
594
N
sing
N
595
N
doub
N
596
N
sing
N
597
N
sing
N
598
N
sing
N
599
N
sing
N
600
N
sing
N
601
N
sing
N
602
N
sing
N
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
sing
US
Mol.Cell
MOCEFL
2168
1097-2765
26
257
271
10.1016/j.molcel.2007.02.026
17466627
Last Stop on the Road to Repair: Structure of E. coli DNA Ligase Bound to Nicked DNA-Adenylate.
2007
10.2210/pdb2owo/pdb
pdb_00002owo
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
CCD
2006-12-19
ADSC QUANTUM 4
SI(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
24-ID-C
APS
0.9792
SYNCHROTRON
APS BEAMLINE 24-ID-C
8034.175
26-MER
1
syn
polymer
3950.602
5'-D(*AP*CP*AP*AP*TP*TP*GP*CP*GP*AP*CP*(OMC)P*C)-3'
1
syn
polymer
3975.611
5'-D(*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*AP*TP*G)-3'
1
syn
polymer
73699.969
DNA ligase
6.5.1.2
1
man
polymer
347.221
ADENOSINE MONOPHOSPHATE
1
syn
non-polymer
65.409
ZINC ION
1
syn
non-polymer
96.063
SULFATE ION
4
syn
non-polymer
18.015
water
320
nat
water
Polydeoxyribonucleotide synthase [NAD+]
no
no
(DC)(DA)(DT)(DT)(DC)(DC)(DG)(DA)(DT)(DA)(DG)(DT)(DG)(DG)(DG)(DG)(DT)(DC)(DG)(DC)
(DA)(DA)(DT)(DT)(DG)(DT)
CATTCCGATAGTGGGGTCGCAATTGT
B
polydeoxyribonucleotide
no
yes
(DA)(DC)(DA)(DA)(DT)(DT)(DG)(DC)(DG)(DA)(DC)(OMC)(DC)
ACAATTGCGACCC
C
polydeoxyribonucleotide
no
no
(DC)(DA)(DC)(DT)(DA)(DT)(DC)(DG)(DG)(DA)(DA)(DT)(DG)
CACTATCGGAATG
D
polydeoxyribonucleotide
no
no
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPML
SLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH
GENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQEQ
MTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR
EVVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHV
HNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVI
AGEAAGSKLAKAQELGIEVIDEAEMLRLLGS
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPML
SLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH
GENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQEQ
MTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR
EVVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHV
HNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVI
AGEAAGSKLAKAQELGIEVIDEAEMLRLLGS
A
polypeptide(L)
n
n
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Escherichia
Escherichia coli
K12
Escherichia
Escherichia coli
sample
ligA
83333
Escherichia coli
469008
Escherichia coli BL21(DE3)
BL21(DE3)
pET16B
pET-LigA
1
2.52
51.28
VAPOR DIFFUSION, SITTING DROP
6.0
EcoLigA (0.3 mM) was reacted with 5 mM MgCl2 and 0.3 mM NAD+ for 30 min at 22 C. The ligase-adenylylation reaction was then quenched by adding 10 mM EDTA. The mixture was supplemented with 26-bp nicked duplex DNA (0.318 mM). This LigA-nucleic acid solution was mixed 1:2 with a well solution containing 200 mM ammonium sulfate, 50 mM sodium acetate, 24% PEG-4000. Crystals were grown at 22 C by the sitting drop vapor diffusion method. Crystals appeared after 3 days. The crystals were transferred serially to solutions containing 5% glycerol/24% PEG-4000, 10% glycerol/26% PEG-4000, 15% glycerol/28% PEG-4000, and 20% glycerol/30% PEG-4000 in 100 mM ammonium sulfate, 50 mM sodium acetate, after which they were flash-frozen in liquid nitrogen. , pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
295
sodium acetate
1
ammonium sulfate
1
PEG-400
1
sodium acetate
2
ammonium sulfate
2
PEG-400
2
5.198
1
19
B
1
D
52
-5.739
B_DC1:DG52_D
1
-3.520
0.081
-0.155
-0.134
9.348
1
20
B
2
D
51
0.518
B_DA2:DT51_D
2
-15.069
0.266
0.091
0.015
4.915
1
20
B
3
D
50
8.879
B_DT3:DA50_D
3
-15.895
0.025
-0.057
0.084
2.933
1
20
B
4
D
49
-1.219
B_DT4:DA49_D
4
-15.653
-0.051
-0.251
0.151
-9.824
1
19
B
5
D
48
-1.080
B_DC5:DG48_D
5
-9.618
-0.284
0.163
-0.043
-3.937
1
19
B
6
D
47
0.385
B_DC6:DG47_D
6
-3.906
0.243
0.249
-0.079
-5.670
1
19
B
7
D
46
-1.353
B_DG7:DC46_D
7
-18.257
-0.244
0.137
0.029
-8.640
1
20
B
8
D
45
-0.229
B_DA8:DT45_D
8
-18.106
0.214
-0.231
0.092
-4.670
1
20
B
9
D
44
5.746
B_DT9:DA44_D
9
-16.769
0.046
-0.017
-0.048
-11.925
1
20
B
10
D
43
6.550
B_DA10:DT43_D
10
-12.216
0.324
-0.089
0.107
-0.526
1
19
B
11
D
42
0.491
B_DG11:DC42_D
11
-5.837
-0.145
0.034
0.034
8.461
1
20
B
12
D
41
-9.041
B_DT12:DA41_D
12
-1.604
0.114
-0.859
-0.157
6.794
1
19
B
13
D
40
4.052
B_DG13:DC40_D
13
-12.493
-0.245
0.380
-0.123
-18.475
1
19
B
14
C
39
0.045
B_DG14:DC39_C
14
7.841
-0.254
-0.583
-0.251
14.919
1
19
B
15
C
38
1.631
B_DG15:OMC38_C
15
-1.759
-0.070
0.278
-0.073
-9.253
1
19
B
16
C
37
-1.340
B_DG16:DC37_C
16
-3.597
-0.627
-0.402
-0.166
8.408
1
20
B
17
C
36
0.590
B_DT17:DA36_C
17
-7.566
-0.209
-0.179
-0.082
2.226
1
19
B
18
C
35
-2.086
B_DC18:DG35_C
18
-13.605
0.349
-0.235
-0.106
4.535
1
19
B
19
C
34
-3.214
B_DG19:DC34_C
19
-7.453
0.051
0.107
0.040
11.774
1
19
B
20
C
33
-5.663
B_DC20:DG33_C
20
-8.243
0.346
0.073
-0.117
4.636
1
20
B
21
C
32
5.051
B_DA21:DT32_C
21
-6.961
-0.043
0.178
-0.148
3.681
1
20
B
22
C
31
6.590
B_DA22:DT31_C
22
-17.511
-0.103
-0.084
-0.106
-0.762
1
20
B
23
C
30
2.859
B_DT23:DA30_C
23
-16.850
-0.162
0.268
-0.064
4.730
1
20
B
24
C
29
1.041
B_DT24:DA29_C
24
-18.086
-0.007
-0.149
-0.250
-11.453
1
19
B
25
C
28
-2.186
B_DG25:DC28_C
25
-10.869
0.759
0.031
-0.142
7.269
1
20
B
26
C
27
5.144
B_DT26:DA27_C
26
-7.887
0.307
0.006
-0.212
3.354
39.671
B
B
1
2
16.756
D
D
52
51
3.316
11.223
-0.020
0.617
BB_DC1DA2:DT51DG52_DD
1
1.928
-2.878
38.064
-0.457
0.264
3.205
34.630
B
B
2
3
5.695
D
D
51
50
3.260
3.383
0.475
-0.617
BB_DA2DT3:DA50DT51_DD
2
1.605
-2.702
34.433
-1.553
-0.553
3.230
35.983
B
B
3
4
-3.604
D
D
50
49
3.227
-2.225
-0.016
-0.166
BB_DT3DT4:DA49DA50_DD
3
0.615
-0.996
35.911
0.044
0.113
3.481
39.333
B
B
4
5
-2.492
D
D
49
48
3.496
-1.675
0.243
-0.266
BB_DT4DC5:DG48DA49_DD
4
-2.680
3.985
39.210
-0.182
-0.701
3.097
31.351
B
B
5
6
3.868
D
D
48
47
3.122
2.088
-0.203
-0.370
BB_DC5DC6:DG47DG48_DD
5
-1.275
2.362
31.257
-1.059
0.148
3.325
36.432
B
B
6
7
3.511
D
D
47
46
3.264
2.193
-0.745
0.525
BB_DC6DG7:DC46DG47_DD
6
-2.075
3.323
36.311
0.533
0.901
3.388
38.909
B
B
7
8
6.354
D
D
46
45
3.386
4.223
0.241
0.121
BB_DG7DA8:DT45DC46_DD
7
1.719
-2.586
38.651
-0.351
-0.145
3.126
31.517
B
B
8
9
-3.995
D
D
45
44
3.108
-2.168
-0.111
-0.347
BB_DA8DT9:DA44DT45_DD
8
-1.518
2.798
31.408
-0.254
-0.066
3.588
43.112
B
B
9
10
0.797
D
D
44
43
3.581
0.585
0.028
0.888
BB_DT9DA10:DT43DA44_DD
9
2.668
-3.633
43.029
1.145
0.249
2.935
27.571
B
B
10
11
14.195
D
D
43
42
3.002
6.694
0.061
0.130
BB_DA10DG11:DC42DT43_DD
10
-1.959
4.154
26.691
-1.235
-0.570
3.133
31.854
B
B
11
12
0.028
D
D
42
41
3.128
0.015
0.328
-0.178
BB_DG11DT12:DA41DC42_DD
11
6.177
-11.324
31.265
-0.327
0.490
2.548
40.462
B
B
12
13
16.770
D
D
41
40
3.344
11.304
1.327
-0.674
BB_DT12DG13:DC40DA41_DD
12
-11.383
16.886
37.269
-2.167
-3.120
-2.128
22.211
B
B
13
14
65.612
D
C
40
39
4.090
19.929
-3.187
-3.385
BB_DG13DG14:DC39DC40_CD
13
4.802
-15.810
8.595
-12.070
9.065
2.915
32.183
B
B
14
15
2.988
C
C
39
38
2.846
1.632
-0.771
-0.585
BB_DG14DG15:OMC38DC39_CC
14
-9.483
17.359
30.747
-1.318
-0.136
3.865
39.277
B
B
15
16
5.640
C
C
38
37
3.953
3.781
-0.254
-0.327
BB_DG15DG16:DC37OMC38_CC
15
3.756
-5.604
38.928
-1.027
0.915
2.780
24.652
B
B
16
17
10.656
C
C
37
36
2.835
4.522
-0.648
-0.216
BB_DG16DT17:DA36DC37_CC
16
-1.341
3.160
24.204
-1.705
1.162
3.384
41.646
B
B
17
18
3.534
C
C
36
35
3.388
2.509
-0.036
0.197
BB_DT17DC18:DG35DA36_CC
17
2.864
-4.033
41.480
0.002
0.365
3.324
36.436
B
B
18
19
13.463
C
C
35
34
3.271
8.335
-0.381
0.511
BB_DC18DG19:DC34DG35_CC
18
-3.706
5.987
35.314
-0.368
0.082
3.172
32.854
B
B
19
20
-0.030
C
C
34
33
3.169
-0.017
-0.252
-0.254
BB_DG19DC20:DG33DC34_CC
19
-0.418
0.739
32.851
-0.446
0.376
3.613
36.801
B
B
20
21
8.522
C
C
33
32
3.380
5.346
1.719
0.494
BB_DC20DA21:DT32DG33_CC
20
5.043
-8.038
36.085
-0.002
-1.982
3.251
38.419
B
B
21
22
-0.506
C
C
32
31
3.233
-0.333
-1.073
0.484
BB_DA21DA22:DT31DT32_CC
21
-0.871
1.324
38.408
0.776
1.523
3.261
35.061
B
B
22
23
-0.794
C
C
31
30
3.280
-0.478
0.231
-0.732
BB_DA22DT23:DA30DT31_CC
22
-2.844
4.726
34.946
-1.143
-0.810
2.959
39.102
B
B
23
24
-6.868
C
C
30
29
2.982
-4.581
0.075
-0.015
BB_DT23DT24:DA29DA30_CC
23
3.702
-5.551
38.673
0.480
0.295
3.661
42.826
B
B
24
25
3.916
C
C
29
28
3.685
2.858
-0.039
-0.258
BB_DT24DG25:DC28DA29_CC
24
-0.647
0.887
42.730
-0.674
-0.019
2.768
33.156
B
B
25
26
1.100
C
C
28
27
2.769
0.628
-0.009
0.089
BB_DG25DT26:DA27DC28_CC
25
1.104
-1.934
33.132
0.067
0.172
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2007-05-15
1
1
2008-05-01
1
2
2011-07-13
1
3
2017-10-18
1
4
2023-08-30
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2007-02-16
REL
REL
AMP
ADENOSINE MONOPHOSPHATE
ZN
ZINC ION
SO4
SULFATE ION
HOH
water
Chemically synthesized
sample
Chemically synthesized
sample
Chemically synthesized
sample
1TA8
1. EfaLigA (aa 71-317 from PDB 1TA8) 2. TfiLigA (aa 433-584 and 321-391 from PDB 1V9P)
PDB
experimental model
1V9P
1. EfaLigA (aa 71-317 from PDB 1TA8) 2. TfiLigA (aa 433-584 and 321-391 from PDB 1V9P)
PDB
experimental model
AMP
53
5
AMP
AMP
53
D
ZN
321
6
ZN
ZN
672
A
SO4
321
7
SO4
SO4
673
A
SO4
322
7
SO4
SO4
674
A
SO4
323
7
SO4
SO4
675
A
SO4
324
7
SO4
SO4
676
A
WAT
2
8
HOH
HOH
27
B
WAT
6
8
HOH
HOH
28
B
WAT
10
8
HOH
HOH
29
B
WAT
33
8
HOH
HOH
30
B
WAT
41
8
HOH
HOH
31
B
WAT
55
8
HOH
HOH
32
B
WAT
82
8
HOH
HOH
33
B
WAT
87
8
HOH
HOH
34
B
WAT
89
8
HOH
HOH
35
B
WAT
92
8
HOH
HOH
36
B
WAT
103
8
HOH
HOH
37
B
WAT
122
8
HOH
HOH
38
B
WAT
133
8
HOH
HOH
39
B
WAT
136
8
HOH
HOH
40
B
WAT
138
8
HOH
HOH
41
B
WAT
145
8
HOH
HOH
42
B
WAT
148
8
HOH
HOH
43
B
WAT
149
8
HOH
HOH
44
B
WAT
164
8
HOH
HOH
45
B
WAT
165
8
HOH
HOH
46
B
WAT
183
8
HOH
HOH
47
B
WAT
188
8
HOH
HOH
48
B
WAT
189
8
HOH
HOH
49
B
WAT
191
8
HOH
HOH
50
B
WAT
199
8
HOH
HOH
51
B
WAT
206
8
HOH
HOH
52
B
WAT
213
8
HOH
HOH
53
B
WAT
218
8
HOH
HOH
54
B
WAT
221
8
HOH
HOH
55
B
WAT
223
8
HOH
HOH
56
B
WAT
231
8
HOH
HOH
57
B
WAT
240
8
HOH
HOH
58
B
WAT
241
8
HOH
HOH
59
B
WAT
242
8
HOH
HOH
60
B
WAT
247
8
HOH
HOH
61
B
WAT
259
8
HOH
HOH
62
B
WAT
260
8
HOH
HOH
63
B
WAT
261
8
HOH
HOH
64
B
WAT
267
8
HOH
HOH
65
B
WAT
269
8
HOH
HOH
66
B
WAT
274
8
HOH
HOH
67
B
WAT
300
8
HOH
HOH
68
B
WAT
305
8
HOH
HOH
69
B
WAT
42
8
HOH
HOH
42
C
WAT
70
8
HOH
HOH
70
C
WAT
85
8
HOH
HOH
85
C
WAT
98
8
HOH
HOH
98
C
WAT
134
8
HOH
HOH
134
C
WAT
135
8
HOH
HOH
135
C
WAT
137
8
HOH
HOH
137
C
WAT
171
8
HOH
HOH
171
C
WAT
219
8
HOH
HOH
219
C
WAT
272
8
HOH
HOH
272
C
WAT
298
8
HOH
HOH
298
C
WAT
50
8
HOH
HOH
54
D
WAT
121
8
HOH
HOH
55
D
WAT
123
8
HOH
HOH
56
D
WAT
155
8
HOH
HOH
57
D
WAT
159
8
HOH
HOH
58
D
WAT
170
8
HOH
HOH
59
D
WAT
174
8
HOH
HOH
60
D
WAT
215
8
HOH
HOH
61
D
WAT
217
8
HOH
HOH
62
D
WAT
265
8
HOH
HOH
63
D
WAT
275
8
HOH
HOH
64
D
WAT
1
8
HOH
HOH
677
A
WAT
3
8
HOH
HOH
678
A
WAT
4
8
HOH
HOH
679
A
WAT
5
8
HOH
HOH
680
A
WAT
7
8
HOH
HOH
681
A
WAT
8
8
HOH
HOH
682
A
WAT
9
8
HOH
HOH
683
A
WAT
11
8
HOH
HOH
684
A
WAT
12
8
HOH
HOH
685
A
WAT
13
8
HOH
HOH
686
A
WAT
14
8
HOH
HOH
687
A
WAT
15
8
HOH
HOH
688
A
WAT
16
8
HOH
HOH
689
A
WAT
17
8
HOH
HOH
690
A
WAT
18
8
HOH
HOH
691
A
WAT
19
8
HOH
HOH
692
A
WAT
20
8
HOH
HOH
693
A
WAT
21
8
HOH
HOH
694
A
WAT
22
8
HOH
HOH
695
A
WAT
23
8
HOH
HOH
696
A
WAT
24
8
HOH
HOH
697
A
WAT
25
8
HOH
HOH
698
A
WAT
26
8
HOH
HOH
699
A
WAT
27
8
HOH
HOH
700
A
WAT
28
8
HOH
HOH
701
A
WAT
29
8
HOH
HOH
702
A
WAT
30
8
HOH
HOH
703
A
WAT
31
8
HOH
HOH
704
A
WAT
32
8
HOH
HOH
705
A
WAT
34
8
HOH
HOH
706
A
WAT
35
8
HOH
HOH
707
A
WAT
36
8
HOH
HOH
708
A
WAT
37
8
HOH
HOH
709
A
WAT
38
8
HOH
HOH
710
A
WAT
39
8
HOH
HOH
711
A
WAT
40
8
HOH
HOH
712
A
WAT
43
8
HOH
HOH
713
A
WAT
44
8
HOH
HOH
714
A
WAT
45
8
HOH
HOH
715
A
WAT
46
8
HOH
HOH
716
A
WAT
47
8
HOH
HOH
717
A
WAT
48
8
HOH
HOH
718
A
WAT
49
8
HOH
HOH
719
A
WAT
51
8
HOH
HOH
720
A
WAT
52
8
HOH
HOH
721
A
WAT
53
8
HOH
HOH
722
A
WAT
54
8
HOH
HOH
723
A
WAT
56
8
HOH
HOH
724
A
WAT
57
8
HOH
HOH
725
A
WAT
58
8
HOH
HOH
726
A
WAT
59
8
HOH
HOH
727
A
WAT
60
8
HOH
HOH
728
A
WAT
61
8
HOH
HOH
729
A
WAT
62
8
HOH
HOH
730
A
WAT
63
8
HOH
HOH
731
A
WAT
64
8
HOH
HOH
732
A
WAT
65
8
HOH
HOH
733
A
WAT
66
8
HOH
HOH
734
A
WAT
67
8
HOH
HOH
735
A
WAT
68
8
HOH
HOH
736
A
WAT
69
8
HOH
HOH
737
A
WAT
71
8
HOH
HOH
738
A
WAT
72
8
HOH
HOH
739
A
WAT
73
8
HOH
HOH
740
A
WAT
74
8
HOH
HOH
741
A
WAT
75
8
HOH
HOH
742
A
WAT
76
8
HOH
HOH
743
A
WAT
77
8
HOH
HOH
744
A
WAT
78
8
HOH
HOH
745
A
WAT
79
8
HOH
HOH
746
A
WAT
80
8
HOH
HOH
747
A
WAT
81
8
HOH
HOH
748
A
WAT
83
8
HOH
HOH
749
A
WAT
84
8
HOH
HOH
750
A
WAT
86
8
HOH
HOH
751
A
WAT
88
8
HOH
HOH
752
A
WAT
90
8
HOH
HOH
753
A
WAT
91
8
HOH
HOH
754
A
WAT
93
8
HOH
HOH
755
A
WAT
94
8
HOH
HOH
756
A
WAT
95
8
HOH
HOH
757
A
WAT
96
8
HOH
HOH
758
A
WAT
97
8
HOH
HOH
759
A
WAT
99
8
HOH
HOH
760
A
WAT
100
8
HOH
HOH
761
A
WAT
101
8
HOH
HOH
762
A
WAT
102
8
HOH
HOH
763
A
WAT
104
8
HOH
HOH
764
A
WAT
105
8
HOH
HOH
765
A
WAT
106
8
HOH
HOH
766
A
WAT
107
8
HOH
HOH
767
A
WAT
108
8
HOH
HOH
768
A
WAT
109
8
HOH
HOH
769
A
WAT
110
8
HOH
HOH
770
A
WAT
111
8
HOH
HOH
771
A
WAT
112
8
HOH
HOH
772
A
WAT
113
8
HOH
HOH
773
A
WAT
114
8
HOH
HOH
774
A
WAT
115
8
HOH
HOH
775
A
WAT
116
8
HOH
HOH
776
A
WAT
117
8
HOH
HOH
777
A
WAT
118
8
HOH
HOH
778
A
WAT
119
8
HOH
HOH
779
A
WAT
120
8
HOH
HOH
780
A
WAT
124
8
HOH
HOH
781
A
WAT
125
8
HOH
HOH
782
A
WAT
126
8
HOH
HOH
783
A
WAT
127
8
HOH
HOH
784
A
WAT
128
8
HOH
HOH
785
A
WAT
129
8
HOH
HOH
786
A
WAT
130
8
HOH
HOH
787
A
WAT
131
8
HOH
HOH
788
A
WAT
132
8
HOH
HOH
789
A
WAT
139
8
HOH
HOH
790
A
WAT
140
8
HOH
HOH
791
A
WAT
141
8
HOH
HOH
792
A
WAT
142
8
HOH
HOH
793
A
WAT
143
8
HOH
HOH
794
A
WAT
144
8
HOH
HOH
795
A
WAT
146
8
HOH
HOH
796
A
WAT
147
8
HOH
HOH
797
A
WAT
150
8
HOH
HOH
798
A
WAT
151
8
HOH
HOH
799
A
WAT
152
8
HOH
HOH
800
A
WAT
153
8
HOH
HOH
801
A
WAT
154
8
HOH
HOH
802
A
WAT
156
8
HOH
HOH
803
A
WAT
157
8
HOH
HOH
804
A
WAT
158
8
HOH
HOH
805
A
WAT
160
8
HOH
HOH
806
A
WAT
161
8
HOH
HOH
807
A
WAT
162
8
HOH
HOH
808
A
WAT
163
8
HOH
HOH
809
A
WAT
166
8
HOH
HOH
810
A
WAT
167
8
HOH
HOH
811
A
WAT
168
8
HOH
HOH
812
A
WAT
169
8
HOH
HOH
813
A
WAT
172
8
HOH
HOH
814
A
WAT
173
8
HOH
HOH
815
A
WAT
175
8
HOH
HOH
816
A
WAT
176
8
HOH
HOH
817
A
WAT
177
8
HOH
HOH
818
A
WAT
178
8
HOH
HOH
819
A
WAT
179
8
HOH
HOH
820
A
WAT
180
8
HOH
HOH
821
A
WAT
181
8
HOH
HOH
822
A
WAT
182
8
HOH
HOH
823
A
WAT
184
8
HOH
HOH
824
A
WAT
185
8
HOH
HOH
825
A
WAT
186
8
HOH
HOH
826
A
WAT
187
8
HOH
HOH
827
A
WAT
190
8
HOH
HOH
828
A
WAT
192
8
HOH
HOH
829
A
WAT
193
8
HOH
HOH
830
A
WAT
194
8
HOH
HOH
831
A
WAT
195
8
HOH
HOH
832
A
WAT
196
8
HOH
HOH
833
A
WAT
197
8
HOH
HOH
834
A
WAT
198
8
HOH
HOH
835
A
WAT
200
8
HOH
HOH
836
A
WAT
201
8
HOH
HOH
837
A
WAT
202
8
HOH
HOH
838
A
WAT
203
8
HOH
HOH
839
A
WAT
204
8
HOH
HOH
840
A
WAT
205
8
HOH
HOH
841
A
WAT
207
8
HOH
HOH
842
A
WAT
208
8
HOH
HOH
843
A
WAT
209
8
HOH
HOH
844
A
WAT
210
8
HOH
HOH
845
A
WAT
211
8
HOH
HOH
846
A
WAT
212
8
HOH
HOH
847
A
WAT
214
8
HOH
HOH
848
A
WAT
216
8
HOH
HOH
849
A
WAT
220
8
HOH
HOH
850
A
WAT
222
8
HOH
HOH
851
A
WAT
224
8
HOH
HOH
852
A
WAT
225
8
HOH
HOH
853
A
WAT
226
8
HOH
HOH
854
A
WAT
227
8
HOH
HOH
855
A
WAT
228
8
HOH
HOH
856
A
WAT
229
8
HOH
HOH
857
A
WAT
230
8
HOH
HOH
858
A
WAT
232
8
HOH
HOH
859
A
WAT
233
8
HOH
HOH
860
A
WAT
234
8
HOH
HOH
861
A
WAT
235
8
HOH
HOH
862
A
WAT
236
8
HOH
HOH
863
A
WAT
237
8
HOH
HOH
864
A
WAT
238
8
HOH
HOH
865
A
WAT
239
8
HOH
HOH
866
A
WAT
243
8
HOH
HOH
867
A
WAT
244
8
HOH
HOH
868
A
WAT
245
8
HOH
HOH
869
A
WAT
246
8
HOH
HOH
870
A
WAT
248
8
HOH
HOH
871
A
WAT
249
8
HOH
HOH
872
A
WAT
250
8
HOH
HOH
873
A
WAT
251
8
HOH
HOH
874
A
WAT
252
8
HOH
HOH
875
A
WAT
253
8
HOH
HOH
876
A
WAT
254
8
HOH
HOH
877
A
WAT
255
8
HOH
HOH
878
A
WAT
256
8
HOH
HOH
879
A
WAT
257
8
HOH
HOH
880
A
WAT
258
8
HOH
HOH
881
A
WAT
262
8
HOH
HOH
882
A
WAT
263
8
HOH
HOH
883
A
WAT
264
8
HOH
HOH
884
A
WAT
266
8
HOH
HOH
885
A
WAT
268
8
HOH
HOH
886
A
WAT
270
8
HOH
HOH
887
A
WAT
271
8
HOH
HOH
888
A
WAT
273
8
HOH
HOH
889
A
WAT
276
8
HOH
HOH
890
A
WAT
277
8
HOH
HOH
891
A
WAT
278
8
HOH
HOH
892
A
WAT
279
8
HOH
HOH
893
A
WAT
280
8
HOH
HOH
894
A
WAT
281
8
HOH
HOH
895
A
WAT
282
8
HOH
HOH
896
A
WAT
283
8
HOH
HOH
897
A
WAT
284
8
HOH
HOH
898
A
WAT
285
8
HOH
HOH
899
A
WAT
286
8
HOH
HOH
900
A
WAT
287
8
HOH
HOH
901
A
WAT
288
8
HOH
HOH
902
A
WAT
289
8
HOH
HOH
903
A
WAT
290
8
HOH
HOH
904
A
WAT
291
8
HOH
HOH
905
A
WAT
292
8
HOH
HOH
906
A
WAT
293
8
HOH
HOH
907
A
WAT
294
8
HOH
HOH
908
A
WAT
295
8
HOH
HOH
909
A
WAT
296
8
HOH
HOH
910
A
WAT
297
8
HOH
HOH
911
A
WAT
299
8
HOH
HOH
912
A
WAT
301
8
HOH
HOH
913
A
WAT
302
8
HOH
HOH
914
A
WAT
303
8
HOH
HOH
915
A
WAT
304
8
HOH
HOH
916
A
WAT
306
8
HOH
HOH
917
A
WAT
307
8
HOH
HOH
918
A
WAT
308
8
HOH
HOH
919
A
WAT
309
8
HOH
HOH
920
A
WAT
310
8
HOH
HOH
921
A
WAT
311
8
HOH
HOH
922
A
WAT
312
8
HOH
HOH
923
A
WAT
313
8
HOH
HOH
924
A
WAT
314
8
HOH
HOH
925
A
WAT
315
8
HOH
HOH
926
A
WAT
316
8
HOH
HOH
927
A
WAT
317
8
HOH
HOH
928
A
WAT
318
8
HOH
HOH
929
A
WAT
319
8
HOH
HOH
930
A
WAT
320
8
HOH
HOH
931
A
C
1
n
1
DC
1
B
A
2
n
2
DA
2
B
T
3
n
3
DT
3
B
T
4
n
4
DT
4
B
C
5
n
5
DC
5
B
C
6
n
6
DC
6
B
G
7
n
7
DG
7
B
A
8
n
8
DA
8
B
T
9
n
9
DT
9
B
A
10
n
10
DA
10
B
G
11
n
11
DG
11
B
T
12
n
12
DT
12
B
G
13
n
13
DG
13
B
G
14
n
14
DG
14
B
G
15
n
15
DG
15
B
G
16
n
16
DG
16
B
T
17
n
17
DT
17
B
C
18
n
18
DC
18
B
G
19
n
19
DG
19
B
C
20
n
20
DC
20
B
A
21
n
21
DA
21
B
A
22
n
22
DA
22
B
T
23
n
23
DT
23
B
T
24
n
24
DT
24
B
G
25
n
25
DG
25
B
T
26
n
26
DT
26
B
A
27
n
1
DA
27
C
C
28
n
2
DC
28
C
A
29
n
3
DA
29
C
A
30
n
4
DA
30
C
T
31
n
5
DT
31
C
T
32
n
6
DT
32
C
G
33
n
7
DG
33
C
C
34
n
8
DC
34
C
G
35
n
9
DG
35
C
A
36
n
10
DA
36
C
C
37
n
11
DC
37
C
OMC
38
n
12
OMC
38
C
C
39
n
13
DC
39
C
C
40
n
1
DC
40
D
A
41
n
2
DA
41
D
C
42
n
3
DC
42
D
T
43
n
4
DT
43
D
A
44
n
5
DA
44
D
T
45
n
6
DT
45
D
C
46
n
7
DC
46
D
G
47
n
8
DG
47
D
G
48
n
9
DG
48
D
A
49
n
10
DA
49
D
A
50
n
11
DA
50
D
T
51
n
12
DT
51
D
G
52
n
13
DG
52
D
MET
1
n
1
MET
1
A
GLU
2
n
2
GLU
2
A
SER
3
n
3
SER
3
A
ILE
4
n
4
ILE
4
A
GLU
5
n
5
GLU
5
A
GLN
6
n
6
GLN
6
A
GLN
7
n
7
GLN
7
A
LEU
8
n
8
LEU
8
A
THR
9
n
9
THR
9
A
GLU
10
n
10
GLU
10
A
LEU
11
n
11
LEU
11
A
ARG
12
n
12
ARG
12
A
THR
13
n
13
THR
13
A
THR
14
n
14
THR
14
A
LEU
15
n
15
LEU
15
A
ARG
16
n
16
ARG
16
A
HIS
17
n
17
HIS
17
A
HIS
18
n
18
HIS
18
A
GLU
19
n
19
GLU
19
A
TYR
20
n
20
TYR
20
A
LEU
21
n
21
LEU
21
A
TYR
22
n
22
TYR
22
A
HIS
23
n
23
HIS
23
A
VAL
24
n
24
VAL
24
A
MET
25
n
25
MET
25
A
ASP
26
n
26
ASP
26
A
ALA
27
n
27
ALA
27
A
PRO
28
n
28
PRO
28
A
GLU
29
n
29
GLU
29
A
ILE
30
n
30
ILE
30
A
PRO
31
n
31
PRO
31
A
ASP
32
n
32
ASP
32
A
ALA
33
n
33
ALA
33
A
GLU
34
n
34
GLU
34
A
TYR
35
n
35
TYR
35
A
ASP
36
n
36
ASP
36
A
ARG
37
n
37
ARG
37
A
LEU
38
n
38
LEU
38
A
MET
39
n
39
MET
39
A
ARG
40
n
40
ARG
40
A
GLU
41
n
41
GLU
41
A
LEU
42
n
42
LEU
42
A
ARG
43
n
43
ARG
43
A
GLU
44
n
44
GLU
44
A
LEU
45
n
45
LEU
45
A
GLU
46
n
46
GLU
46
A
THR
47
n
47
THR
47
A
LYS
48
n
48
LYS
48
A
HIS
49
n
49
HIS
49
A
PRO
50
n
50
PRO
50
A
GLU
51
n
51
GLU
51
A
LEU
52
n
52
LEU
52
A
ILE
53
n
53
ILE
53
A
THR
54
n
54
THR
54
A
PRO
55
n
55
PRO
55
A
ASP
56
n
56
ASP
56
A
SER
57
n
57
SER
57
A
PRO
58
n
58
PRO
58
A
THR
59
n
59
THR
59
A
GLN
60
n
60
GLN
60
A
ARG
61
n
61
ARG
61
A
VAL
62
n
62
VAL
62
A
GLY
63
n
63
GLY
63
A
ALA
64
n
64
ALA
64
A
ALA
65
n
65
ALA
65
A
PRO
66
n
66
PRO
66
A
LEU
67
n
67
LEU
67
A
ALA
68
n
68
ALA
68
A
ALA
69
n
69
ALA
69
A
PHE
70
n
70
PHE
70
A
SER
71
n
71
SER
71
A
GLN
72
n
72
GLN
72
A
ILE
73
n
73
ILE
73
A
ARG
74
n
74
ARG
74
A
HIS
75
n
75
HIS
75
A
GLU
76
n
76
GLU
76
A
VAL
77
n
77
VAL
77
A
PRO
78
n
78
PRO
78
A
MET
79
n
79
MET
79
A
LEU
80
n
80
LEU
80
A
SER
81
n
81
SER
81
A
LEU
82
n
82
LEU
82
A
ASP
83
n
83
ASP
83
A
ASN
84
n
84
ASN
84
A
VAL
85
n
85
VAL
85
A
PHE
86
n
86
PHE
86
A
ASP
87
n
87
ASP
87
A
GLU
88
n
88
GLU
88
A
GLU
89
n
89
GLU
89
A
SER
90
n
90
SER
90
A
PHE
91
n
91
PHE
91
A
LEU
92
n
92
LEU
92
A
ALA
93
n
93
ALA
93
A
PHE
94
n
94
PHE
94
A
ASN
95
n
95
ASN
95
A
LYS
96
n
96
LYS
96
A
ARG
97
n
97
ARG
97
A
VAL
98
n
98
VAL
98
A
GLN
99
n
99
GLN
99
A
ASP
100
n
100
ASP
100
A
ARG
101
n
101
ARG
101
A
LEU
102
n
102
LEU
102
A
LYS
103
n
103
LYS
103
A
ASN
104
n
104
ASN
104
A
ASN
105
n
105
ASN
105
A
GLU
106
n
106
GLU
106
A
LYS
107
n
107
LYS
107
A
VAL
108
n
108
VAL
108
A
THR
109
n
109
THR
109
A
TRP
110
n
110
TRP
110
A
CYS
111
n
111
CYS
111
A
CYS
112
n
112
CYS
112
A
GLU
113
n
113
GLU
113
A
LEU
114
n
114
LEU
114
A
LYS
115
n
115
LYS
115
A
LEU
116
n
116
LEU
116
A
ASP
117
n
117
ASP
117
A
GLY
118
n
118
GLY
118
A
LEU
119
n
119
LEU
119
A
ALA
120
n
120
ALA
120
A
VAL
121
n
121
VAL
121
A
SER
122
n
122
SER
122
A
ILE
123
n
123
ILE
123
A
LEU
124
n
124
LEU
124
A
TYR
125
n
125
TYR
125
A
GLU
126
n
126
GLU
126
A
ASN
127
n
127
ASN
127
A
GLY
128
n
128
GLY
128
A
VAL
129
n
129
VAL
129
A
LEU
130
n
130
LEU
130
A
VAL
131
n
131
VAL
131
A
SER
132
n
132
SER
132
A
ALA
133
n
133
ALA
133
A
ALA
134
n
134
ALA
134
A
THR
135
n
135
THR
135
A
ARG
136
n
136
ARG
136
A
GLY
137
n
137
GLY
137
A
ASP
138
n
138
ASP
138
A
GLY
139
n
139
GLY
139
A
THR
140
n
140
THR
140
A
THR
141
n
141
THR
141
A
GLY
142
n
142
GLY
142
A
GLU
143
n
143
GLU
143
A
ASP
144
n
144
ASP
144
A
ILE
145
n
145
ILE
145
A
THR
146
n
146
THR
146
A
SER
147
n
147
SER
147
A
ASN
148
n
148
ASN
148
A
VAL
149
n
149
VAL
149
A
ARG
150
n
150
ARG
150
A
THR
151
n
151
THR
151
A
ILE
152
n
152
ILE
152
A
ARG
153
n
153
ARG
153
A
ALA
154
n
154
ALA
154
A
ILE
155
n
155
ILE
155
A
PRO
156
n
156
PRO
156
A
LEU
157
n
157
LEU
157
A
LYS
158
n
158
LYS
158
A
LEU
159
n
159
LEU
159
A
HIS
160
n
160
HIS
160
A
GLY
161
n
161
GLY
161
A
GLU
162
n
162
GLU
162
A
ASN
163
n
163
ASN
163
A
ILE
164
n
164
ILE
164
A
PRO
165
n
165
PRO
165
A
ALA
166
n
166
ALA
166
A
ARG
167
n
167
ARG
167
A
LEU
168
n
168
LEU
168
A
GLU
169
n
169
GLU
169
A
VAL
170
n
170
VAL
170
A
ARG
171
n
171
ARG
171
A
GLY
172
n
172
GLY
172
A
GLU
173
n
173
GLU
173
A
VAL
174
n
174
VAL
174
A
PHE
175
n
175
PHE
175
A
LEU
176
n
176
LEU
176
A
PRO
177
n
177
PRO
177
A
GLN
178
n
178
GLN
178
A
ALA
179
n
179
ALA
179
A
GLY
180
n
180
GLY
180
A
PHE
181
n
181
PHE
181
A
GLU
182
n
182
GLU
182
A
LYS
183
n
183
LYS
183
A
ILE
184
n
184
ILE
184
A
ASN
185
n
185
ASN
185
A
GLU
186
n
186
GLU
186
A
ASP
187
n
187
ASP
187
A
ALA
188
n
188
ALA
188
A
ARG
189
n
189
ARG
189
A
ARG
190
n
190
ARG
190
A
THR
191
n
191
THR
191
A
GLY
192
n
192
GLY
192
A
GLY
193
n
193
GLY
193
A
LYS
194
n
194
LYS
194
A
VAL
195
n
195
VAL
195
A
PHE
196
n
196
PHE
196
A
ALA
197
n
197
ALA
197
A
ASN
198
n
198
ASN
198
A
PRO
199
n
199
PRO
199
A
ARG
200
n
200
ARG
200
A
ASN
201
n
201
ASN
201
A
ALA
202
n
202
ALA
202
A
ALA
203
n
203
ALA
203
A
ALA
204
n
204
ALA
204
A
GLY
205
n
205
GLY
205
A
SER
206
n
206
SER
206
A
LEU
207
n
207
LEU
207
A
ARG
208
n
208
ARG
208
A
GLN
209
n
209
GLN
209
A
LEU
210
n
210
LEU
210
A
ASP
211
n
211
ASP
211
A
PRO
212
n
212
PRO
212
A
ARG
213
n
213
ARG
213
A
ILE
214
n
214
ILE
214
A
THR
215
n
215
THR
215
A
ALA
216
n
216
ALA
216
A
LYS
217
n
217
LYS
217
A
ARG
218
n
218
ARG
218
A
PRO
219
n
219
PRO
219
A
LEU
220
n
220
LEU
220
A
THR
221
n
221
THR
221
A
PHE
222
n
222
PHE
222
A
PHE
223
n
223
PHE
223
A
CYS
224
n
224
CYS
224
A
TYR
225
n
225
TYR
225
A
GLY
226
n
226
GLY
226
A
VAL
227
n
227
VAL
227
A
GLY
228
n
228
GLY
228
A
VAL
229
n
229
VAL
229
A
LEU
230
n
230
LEU
230
A
GLU
231
n
231
GLU
231
A
GLY
232
n
232
GLY
232
A
GLY
233
n
233
GLY
233
A
GLU
234
n
234
GLU
234
A
LEU
235
n
235
LEU
235
A
PRO
236
n
236
PRO
236
A
ASP
237
n
237
ASP
237
A
THR
238
n
238
THR
238
A
HIS
239
n
239
HIS
239
A
LEU
240
n
240
LEU
240
A
GLY
241
n
241
GLY
241
A
ARG
242
n
242
ARG
242
A
LEU
243
n
243
LEU
243
A
LEU
244
n
244
LEU
244
A
GLN
245
n
245
GLN
245
A
PHE
246
n
246
PHE
246
A
LYS
247
n
247
LYS
247
A
LYS
248
n
248
LYS
248
A
TRP
249
n
249
TRP
249
A
GLY
250
n
250
GLY
250
A
LEU
251
n
251
LEU
251
A
PRO
252
n
252
PRO
252
A
VAL
253
n
253
VAL
253
A
SER
254
n
254
SER
254
A
ASP
255
n
255
ASP
255
A
ARG
256
n
256
ARG
256
A
VAL
257
n
257
VAL
257
A
THR
258
n
258
THR
258
A
LEU
259
n
259
LEU
259
A
CYS
260
n
260
CYS
260
A
GLU
261
n
261
GLU
261
A
SER
262
n
262
SER
262
A
ALA
263
n
263
ALA
263
A
GLU
264
n
264
GLU
264
A
GLU
265
n
265
GLU
265
A
VAL
266
n
266
VAL
266
A
LEU
267
n
267
LEU
267
A
ALA
268
n
268
ALA
268
A
PHE
269
n
269
PHE
269
A
TYR
270
n
270
TYR
270
A
HIS
271
n
271
HIS
271
A
LYS
272
n
272
LYS
272
A
VAL
273
n
273
VAL
273
A
GLU
274
n
274
GLU
274
A
GLU
275
n
275
GLU
275
A
ASP
276
n
276
ASP
276
A
ARG
277
n
277
ARG
277
A
PRO
278
n
278
PRO
278
A
THR
279
n
279
THR
279
A
LEU
280
n
280
LEU
280
A
GLY
281
n
281
GLY
281
A
PHE
282
n
282
PHE
282
A
ASP
283
n
283
ASP
283
A
ILE
284
n
284
ILE
284
A
ASP
285
n
285
ASP
285
A
GLY
286
n
286
GLY
286
A
VAL
287
n
287
VAL
287
A
VAL
288
n
288
VAL
288
A
ILE
289
n
289
ILE
289
A
LYS
290
n
290
LYS
290
A
VAL
291
n
291
VAL
291
A
ASN
292
n
292
ASN
292
A
SER
293
n
293
SER
293
A
LEU
294
n
294
LEU
294
A
ALA
295
n
295
ALA
295
A
GLN
296
n
296
GLN
296
A
GLN
297
n
297
GLN
297
A
GLU
298
n
298
GLU
298
A
GLN
299
n
299
GLN
299
A
LEU
300
n
300
LEU
300
A
GLY
301
n
301
GLY
301
A
PHE
302
n
302
PHE
302
A
VAL
303
n
303
VAL
303
A
ALA
304
n
304
ALA
304
A
ARG
305
n
305
ARG
305
A
ALA
306
n
306
ALA
306
A
PRO
307
n
307
PRO
307
A
ARG
308
n
308
ARG
308
A
TRP
309
n
309
TRP
309
A
ALA
310
n
310
ALA
310
A
VAL
311
n
311
VAL
311
A
ALA
312
n
312
ALA
312
A
PHE
313
n
313
PHE
313
A
LYS
314
n
314
LYS
314
A
PHE
315
n
315
PHE
315
A
PRO
316
n
316
PRO
316
A
ALA
317
n
317
ALA
317
A
GLN
318
n
318
GLN
318
A
GLU
319
n
319
GLU
319
A
GLN
320
n
320
GLN
320
A
MET
321
n
321
MET
321
A
THR
322
n
322
THR
322
A
PHE
323
n
323
PHE
323
A
VAL
324
n
324
VAL
324
A
ARG
325
n
325
ARG
325
A
ASP
326
n
326
ASP
326
A
VAL
327
n
327
VAL
327
A
GLU
328
n
328
GLU
328
A
PHE
329
n
329
PHE
329
A
GLN
330
n
330
GLN
330
A
VAL
331
n
331
VAL
331
A
GLY
332
n
332
GLY
332
A
ARG
333
n
333
ARG
333
A
THR
334
n
334
THR
334
A
GLY
335
n
335
GLY
335
A
ALA
336
n
336
ALA
336
A
ILE
337
n
337
ILE
337
A
THR
338
n
338
THR
338
A
PRO
339
n
339
PRO
339
A
VAL
340
n
340
VAL
340
A
ALA
341
n
341
ALA
341
A
ARG
342
n
342
ARG
342
A
LEU
343
n
343
LEU
343
A
GLU
344
n
344
GLU
344
A
PRO
345
n
345
PRO
345
A
VAL
346
n
346
VAL
346
A
HIS
347
n
347
HIS
347
A
VAL
348
n
348
VAL
348
A
ALA
349
n
349
ALA
349
A
GLY
350
n
350
GLY
350
A
VAL
351
n
351
VAL
351
A
LEU
352
n
352
LEU
352
A
VAL
353
n
353
VAL
353
A
SER
354
n
354
SER
354
A
ASN
355
n
355
ASN
355
A
ALA
356
n
356
ALA
356
A
THR
357
n
357
THR
357
A
LEU
358
n
358
LEU
358
A
HIS
359
n
359
HIS
359
A
ASN
360
n
360
ASN
360
A
ALA
361
n
361
ALA
361
A
ASP
362
n
362
ASP
362
A
GLU
363
n
363
GLU
363
A
ILE
364
n
364
ILE
364
A
GLU
365
n
365
GLU
365
A
ARG
366
n
366
ARG
366
A
LEU
367
n
367
LEU
367
A
GLY
368
n
368
GLY
368
A
LEU
369
n
369
LEU
369
A
ARG
370
n
370
ARG
370
A
ILE
371
n
371
ILE
371
A
GLY
372
n
372
GLY
372
A
ASP
373
n
373
ASP
373
A
LYS
374
n
374
LYS
374
A
VAL
375
n
375
VAL
375
A
VAL
376
n
376
VAL
376
A
ILE
377
n
377
ILE
377
A
ARG
378
n
378
ARG
378
A
ARG
379
n
379
ARG
379
A
ALA
380
n
380
ALA
380
A
GLY
381
n
381
GLY
381
A
ASP
382
n
382
ASP
382
A
VAL
383
n
383
VAL
383
A
ILE
384
n
384
ILE
384
A
PRO
385
n
385
PRO
385
A
GLN
386
n
386
GLN
386
A
VAL
387
n
387
VAL
387
A
VAL
388
n
388
VAL
388
A
ASN
389
n
389
ASN
389
A
VAL
390
n
390
VAL
390
A
VAL
391
n
391
VAL
391
A
LEU
392
n
392
LEU
392
A
SER
393
n
393
SER
393
A
GLU
394
n
394
GLU
394
A
ARG
395
n
395
ARG
395
A
PRO
396
n
396
PRO
396
A
GLU
397
n
397
GLU
397
A
ASP
398
n
398
ASP
398
A
THR
399
n
399
THR
399
A
ARG
400
n
400
ARG
400
A
GLU
401
n
401
GLU
401
A
VAL
402
n
402
VAL
402
A
VAL
403
n
403
VAL
403
A
PHE
404
n
404
PHE
404
A
PRO
405
n
405
PRO
405
A
THR
406
n
406
THR
406
A
HIS
407
n
407
HIS
407
A
CYS
408
n
408
CYS
408
A
PRO
409
n
409
PRO
409
A
VAL
410
n
410
VAL
410
A
CYS
411
n
411
CYS
411
A
GLY
412
n
412
GLY
412
A
SER
413
n
413
SER
413
A
ASP
414
n
414
ASP
414
A
VAL
415
n
415
VAL
415
A
GLU
416
n
416
GLU
416
A
ARG
417
n
417
ARG
417
A
VAL
418
n
418
VAL
418
A
GLU
419
n
419
GLU
419
A
GLY
420
n
420
GLY
420
A
GLU
421
n
421
GLU
421
A
ALA
422
n
422
ALA
422
A
VAL
423
n
423
VAL
423
A
ALA
424
n
424
ALA
424
A
ARG
425
n
425
ARG
425
A
CYS
426
n
426
CYS
426
A
THR
427
n
427
THR
427
A
GLY
428
n
428
GLY
428
A
GLY
429
n
429
GLY
429
A
LEU
430
n
430
LEU
430
A
ILE
431
n
431
ILE
431
A
CYS
432
n
432
CYS
432
A
GLY
433
n
433
GLY
433
A
ALA
434
n
434
ALA
434
A
GLN
435
n
435
GLN
435
A
ARG
436
n
436
ARG
436
A
LYS
437
n
437
LYS
437
A
GLU
438
n
438
GLU
438
A
SER
439
n
439
SER
439
A
LEU
440
n
440
LEU
440
A
LYS
441
n
441
LYS
441
A
HIS
442
n
442
HIS
442
A
PHE
443
n
443
PHE
443
A
VAL
444
n
444
VAL
444
A
SER
445
n
445
SER
445
A
ARG
446
n
446
ARG
446
A
ARG
447
n
447
ARG
447
A
ALA
448
n
448
ALA
448
A
MET
449
n
449
MET
449
A
ASP
450
n
450
ASP
450
A
VAL
451
n
451
VAL
451
A
ASP
452
n
452
ASP
452
A
GLY
453
n
453
GLY
453
A
MET
454
n
454
MET
454
A
GLY
455
n
455
GLY
455
A
ASP
456
n
456
ASP
456
A
LYS
457
n
457
LYS
457
A
ILE
458
n
458
ILE
458
A
ILE
459
n
459
ILE
459
A
ASP
460
n
460
ASP
460
A
GLN
461
n
461
GLN
461
A
LEU
462
n
462
LEU
462
A
VAL
463
n
463
VAL
463
A
GLU
464
n
464
GLU
464
A
LYS
465
n
465
LYS
465
A
GLU
466
n
466
GLU
466
A
TYR
467
n
467
TYR
467
A
VAL
468
n
468
VAL
468
A
HIS
469
n
469
HIS
469
A
THR
470
n
470
THR
470
A
PRO
471
n
471
PRO
471
A
ALA
472
n
472
ALA
472
A
ASP
473
n
473
ASP
473
A
LEU
474
n
474
LEU
474
A
PHE
475
n
475
PHE
475
A
LYS
476
n
476
LYS
476
A
LEU
477
n
477
LEU
477
A
THR
478
n
478
THR
478
A
ALA
479
n
479
ALA
479
A
GLY
480
n
480
GLY
480
A
LYS
481
n
481
LYS
481
A
LEU
482
n
482
LEU
482
A
THR
483
n
483
THR
483
A
GLY
484
n
484
GLY
484
A
LEU
485
n
485
LEU
485
A
GLU
486
n
486
GLU
486
A
ARG
487
n
487
ARG
487
A
MET
488
n
488
MET
488
A
GLY
489
n
489
GLY
489
A
PRO
490
n
490
PRO
490
A
LYS
491
n
491
LYS
491
A
SER
492
n
492
SER
492
A
ALA
493
n
493
ALA
493
A
GLN
494
n
494
GLN
494
A
ASN
495
n
495
ASN
495
A
VAL
496
n
496
VAL
496
A
VAL
497
n
497
VAL
497
A
ASN
498
n
498
ASN
498
A
ALA
499
n
499
ALA
499
A
LEU
500
n
500
LEU
500
A
GLU
501
n
501
GLU
501
A
LYS
502
n
502
LYS
502
A
ALA
503
n
503
ALA
503
A
LYS
504
n
504
LYS
504
A
GLU
505
n
505
GLU
505
A
THR
506
n
506
THR
506
A
THR
507
n
507
THR
507
A
PHE
508
n
508
PHE
508
A
ALA
509
n
509
ALA
509
A
ARG
510
n
510
ARG
510
A
PHE
511
n
511
PHE
511
A
LEU
512
n
512
LEU
512
A
TYR
513
n
513
TYR
513
A
ALA
514
n
514
ALA
514
A
LEU
515
n
515
LEU
515
A
GLY
516
n
516
GLY
516
A
ILE
517
n
517
ILE
517
A
ARG
518
n
518
ARG
518
A
GLU
519
n
519
GLU
519
A
VAL
520
n
520
VAL
520
A
GLY
521
n
521
GLY
521
A
GLU
522
n
522
GLU
522
A
ALA
523
n
523
ALA
523
A
THR
524
n
524
THR
524
A
ALA
525
n
525
ALA
525
A
ALA
526
n
526
ALA
526
A
GLY
527
n
527
GLY
527
A
LEU
528
n
528
LEU
528
A
ALA
529
n
529
ALA
529
A
ALA
530
n
530
ALA
530
A
TYR
531
n
531
TYR
531
A
PHE
532
n
532
PHE
532
A
GLY
533
n
533
GLY
533
A
THR
534
n
534
THR
534
A
LEU
535
n
535
LEU
535
A
GLU
536
n
536
GLU
536
A
ALA
537
n
537
ALA
537
A
LEU
538
n
538
LEU
538
A
GLU
539
n
539
GLU
539
A
ALA
540
n
540
ALA
540
A
ALA
541
n
541
ALA
541
A
SER
542
n
542
SER
542
A
ILE
543
n
543
ILE
543
A
GLU
544
n
544
GLU
544
A
GLU
545
n
545
GLU
545
A
LEU
546
n
546
LEU
546
A
GLN
547
n
547
GLN
547
A
LYS
548
n
548
LYS
548
A
VAL
549
n
549
VAL
549
A
PRO
550
n
550
PRO
550
A
ASP
551
n
551
ASP
551
A
VAL
552
n
552
VAL
552
A
GLY
553
n
553
GLY
553
A
ILE
554
n
554
ILE
554
A
VAL
555
n
555
VAL
555
A
VAL
556
n
556
VAL
556
A
ALA
557
n
557
ALA
557
A
SER
558
n
558
SER
558
A
HIS
559
n
559
HIS
559
A
VAL
560
n
560
VAL
560
A
HIS
561
n
561
HIS
561
A
ASN
562
n
562
ASN
562
A
PHE
563
n
563
PHE
563
A
PHE
564
n
564
PHE
564
A
ALA
565
n
565
ALA
565
A
GLU
566
n
566
GLU
566
A
GLU
567
n
567
GLU
567
A
SER
568
n
568
SER
568
A
ASN
569
n
569
ASN
569
A
ARG
570
n
570
ARG
570
A
ASN
571
n
571
ASN
571
A
VAL
572
n
572
VAL
572
A
ILE
573
n
573
ILE
573
A
SER
574
n
574
SER
574
A
GLU
575
n
575
GLU
575
A
LEU
576
n
576
LEU
576
A
LEU
577
n
577
LEU
577
A
ALA
578
n
578
ALA
578
A
GLU
579
n
579
GLU
579
A
GLY
580
n
580
GLY
580
A
VAL
581
n
581
VAL
581
A
HIS
582
n
582
HIS
582
A
TRP
583
n
583
TRP
583
A
PRO
584
n
584
PRO
584
A
ALA
585
n
585
ALA
585
A
PRO
586
n
586
PRO
586
A
n
587
587
A
n
588
588
A
n
589
589
A
n
590
590
A
n
591
591
A
n
592
592
A
n
593
593
A
n
594
594
A
n
595
595
A
n
596
596
A
n
597
597
A
n
598
598
A
n
599
599
A
n
600
600
A
n
601
601
A
n
602
602
A
n
603
603
A
n
604
604
A
n
605
605
A
n
606
606
A
n
607
607
A
n
608
608
A
n
609
609
A
n
610
610
A
n
611
611
A
n
612
612
A
n
613
613
A
n
614
614
A
n
615
615
A
n
616
616
A
n
617
617
A
n
618
618
A
n
619
619
A
n
620
620
A
n
621
621
A
n
622
622
A
n
623
623
A
n
624
624
A
n
625
625
A
n
626
626
A
n
627
627
A
n
628
628
A
n
629
629
A
n
630
630
A
n
631
631
A
n
632
632
A
n
633
633
A
n
634
634
A
n
635
635
A
n
636
636
A
n
637
637
A
n
638
638
A
n
639
639
A
n
640
640
A
n
641
641
A
n
642
642
A
n
643
643
A
n
644
644
A
n
645
645
A
n
646
646
A
n
647
647
A
n
648
648
A
n
649
649
A
n
650
650
A
n
651
651
A
n
652
652
A
n
653
653
A
n
654
654
A
n
655
655
A
n
656
656
A
n
657
657
A
n
658
658
A
n
659
659
A
n
660
660
A
n
661
661
A
n
662
662
A
n
663
663
A
n
664
664
A
n
665
665
A
n
666
666
A
n
667
667
A
n
668
668
A
n
669
669
A
n
670
670
A
n
671
671
A
author_defined_assembly
4
tetrameric
A
CYS
408
D
SG
CYS
408
1_555
A
ZN
672
F
ZN
ZN
1_555
A
CYS
411
D
SG
CYS
411
1_555
107.7
A
CYS
408
D
SG
CYS
408
1_555
A
ZN
672
F
ZN
ZN
1_555
A
CYS
426
D
SG
CYS
426
1_555
105.8
A
CYS
411
D
SG
CYS
411
1_555
A
ZN
672
F
ZN
ZN
1_555
A
CYS
426
D
SG
CYS
426
1_555
88.6
A
CYS
408
D
SG
CYS
408
1_555
A
ZN
672
F
ZN
ZN
1_555
A
CYS
432
D
SG
CYS
432
1_555
120.8
A
CYS
411
D
SG
CYS
411
1_555
A
ZN
672
F
ZN
ZN
1_555
A
CYS
432
D
SG
CYS
432
1_555
114.6
A
CYS
426
D
SG
CYS
426
1_555
A
ZN
672
F
ZN
ZN
1_555
A
CYS
432
D
SG
CYS
432
1_555
114.4
C
OMC
38
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
B
OMC
12
C
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
73
D
N
ILE
73
A
O
GLY
142
D
O
GLY
142
A
N
VAL
85
D
N
VAL
85
A
O
ALA
312
D
O
ALA
312
A
O
PHE
313
D
O
PHE
313
A
N
VAL
287
D
N
VAL
287
A
O
GLY
286
D
O
GLY
286
A
N
LYS
115
D
N
LYS
115
A
N
CYS
112
D
N
CYS
112
A
O
THR
258
D
O
THR
258
A
O
VAL
131
D
O
VAL
131
A
N
LEU
124
D
N
LEU
124
A
N
ILE
123
D
N
ILE
123
A
O
VAL
170
D
O
VAL
170
A
N
GLU
169
D
N
GLU
169
A
O
GLY
228
D
O
GLY
228
A
O
SER
354
D
O
SER
354
A
N
LEU
343
D
N
LEU
343
A
O
ARG
342
D
O
ARG
342
A
N
ASP
326
D
N
ASP
326
A
N
GLN
320
D
N
GLN
320
A
O
ILE
377
D
O
ILE
377
A
N
VAL
376
D
N
VAL
376
A
O
ASN
389
D
O
ASN
389
A
N
GLU
416
D
N
GLU
416
A
O
ARG
425
D
O
ARG
425
1
A
HOH
706
N
HOH
1
A
ILE
587
D
ILE
587
1
Y
1
A
VAL
588
D
VAL
588
1
Y
1
A
ILE
589
D
ILE
589
1
Y
1
A
ASN
590
D
ASN
590
1
Y
1
A
ALA
591
D
ALA
591
1
Y
1
A
GLU
592
D
GLU
592
1
Y
1
A
GLU
593
D
GLU
593
1
Y
1
A
ILE
594
D
ILE
594
1
Y
1
A
ASP
595
D
ASP
595
1
Y
1
A
SER
596
D
SER
596
1
Y
1
A
PRO
597
D
PRO
597
1
Y
1
A
PHE
598
D
PHE
598
1
Y
1
A
ALA
599
D
ALA
599
1
Y
1
A
GLY
600
D
GLY
600
1
Y
1
A
LYS
601
D
LYS
601
1
Y
1
A
THR
602
D
THR
602
1
Y
1
A
VAL
603
D
VAL
603
1
Y
1
A
VAL
604
D
VAL
604
1
Y
1
A
LEU
605
D
LEU
605
1
Y
1
A
THR
606
D
THR
606
1
Y
1
A
GLY
607
D
GLY
607
1
Y
1
A
SER
608
D
SER
608
1
Y
1
A
LEU
609
D
LEU
609
1
Y
1
A
SER
610
D
SER
610
1
Y
1
A
GLN
611
D
GLN
611
1
Y
1
A
MET
612
D
MET
612
1
Y
1
A
SER
613
D
SER
613
1
Y
1
A
ARG
614
D
ARG
614
1
Y
1
A
ASP
615
D
ASP
615
1
Y
1
A
ASP
616
D
ASP
616
1
Y
1
A
ALA
617
D
ALA
617
1
Y
1
A
LYS
618
D
LYS
618
1
Y
1
A
ALA
619
D
ALA
619
1
Y
1
A
ARG
620
D
ARG
620
1
Y
1
A
LEU
621
D
LEU
621
1
Y
1
A
VAL
622
D
VAL
622
1
Y
1
A
GLU
623
D
GLU
623
1
Y
1
A
LEU
624
D
LEU
624
1
Y
1
A
GLY
625
D
GLY
625
1
Y
1
A
ALA
626
D
ALA
626
1
Y
1
A
LYS
627
D
LYS
627
1
Y
1
A
VAL
628
D
VAL
628
1
Y
1
A
ALA
629
D
ALA
629
1
Y
1
A
GLY
630
D
GLY
630
1
Y
1
A
SER
631
D
SER
631
1
Y
1
A
VAL
632
D
VAL
632
1
Y
1
A
SER
633
D
SER
633
1
Y
1
A
LYS
634
D
LYS
634
1
Y
1
A
LYS
635
D
LYS
635
1
Y
1
A
THR
636
D
THR
636
1
Y
1
A
ASP
637
D
ASP
637
1
Y
1
A
LEU
638
D
LEU
638
1
Y
1
A
VAL
639
D
VAL
639
1
Y
1
A
ILE
640
D
ILE
640
1
Y
1
A
ALA
641
D
ALA
641
1
Y
1
A
GLY
642
D
GLY
642
1
Y
1
A
GLU
643
D
GLU
643
1
Y
1
A
ALA
644
D
ALA
644
1
Y
1
A
ALA
645
D
ALA
645
1
Y
1
A
GLY
646
D
GLY
646
1
Y
1
A
SER
647
D
SER
647
1
Y
1
A
LYS
648
D
LYS
648
1
Y
1
A
LEU
649
D
LEU
649
1
Y
1
A
ALA
650
D
ALA
650
1
Y
1
A
LYS
651
D
LYS
651
1
Y
1
A
ALA
652
D
ALA
652
1
Y
1
A
GLN
653
D
GLN
653
1
Y
1
A
GLU
654
D
GLU
654
1
Y
1
A
LEU
655
D
LEU
655
1
Y
1
A
GLY
656
D
GLY
656
1
Y
1
A
ILE
657
D
ILE
657
1
Y
1
A
GLU
658
D
GLU
658
1
Y
1
A
VAL
659
D
VAL
659
1
Y
1
A
ILE
660
D
ILE
660
1
Y
1
A
ASP
661
D
ASP
661
1
Y
1
A
GLU
662
D
GLU
662
1
Y
1
A
ALA
663
D
ALA
663
1
Y
1
A
GLU
664
D
GLU
664
1
Y
1
A
MET
665
D
MET
665
1
Y
1
A
LEU
666
D
LEU
666
1
Y
1
A
ARG
667
D
ARG
667
1
Y
1
A
LEU
668
D
LEU
668
1
Y
1
A
LEU
669
D
LEU
669
1
Y
1
A
GLY
670
D
GLY
670
1
Y
1
A
SER
671
D
SER
671
1
Y
1
B
DT
12
0.083
SIDE CHAIN
1
B
DG
13
0.086
SIDE CHAIN
1
A
PRO
31
-49.15
-11.76
1
A
SER
81
-108.83
-167.03
1
A
ARG
101
-68.44
-71.31
1
A
GLU
106
-2.72
-68.15
1
A
LYS
107
-53.97
81.45
1
A
HIS
160
-131.48
-31.90
1
A
THR
191
-85.76
-156.50
1
A
VAL
303
-106.49
-168.97
1
A
THR
322
-168.44
-167.91
1
A
ALA
349
38.71
53.60
1
A
HIS
359
65.65
-64.92
1
A
VAL
383
-140.31
-55.49
1
A
SER
413
-52.87
173.61
1
A
ALA
448
-108.87
-118.39
1
A
THR
506
-131.84
-150.36
dna-rna-apc_rep.param
dna-rna-apc.top
protein_rep-apl.param
protein-apl.top
water_rep.param
ion.top
ion.param
water.top
39.400
-2.820
0.000
4.850
-0.380
0.000
3.200
0.254
0.006
0.217
2.300
30.340
1959
39734
39098
5.000
98.400
RANDOM
1955275.250
0.000
1
RESTRAINED
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
1. EfaLigA (aa 71-317 from PDB 1TA8)
2. TfiLigA (aa 433-584 and 321-391 from PDB 1V9P)
FLAT MODEL
34.033
0.328
0.370
0.300
5.000
0.350
0.300
2.300
30.340
320
5991
44
1062
4565
0.006
1.200
21.400
1.010
1.340
1.500
2.180
2.000
2.050
2.000
3.060
2.500
0.321
0.018
0.286
2.440
303
5573
5876
6
5.200
88.800
2.300
40.000
2OWO
39615
39100
-3.0
0.084
1.503
1
12.000
4.000
98.700
0.422
2.30
2.38
3598
1.103
1
3.50
91.20
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns.csb.yale.edu/v1.1/
CNS
package
1.1
data extraction
PDB
sw-help@rcsb.rutgers.edu
April. 3, 2006
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
2.000
data collection
ADSC
QUANTUM
phasing
MOLREP
Last Stop on the Road to Repair: Structure of E.coli DNA Ligase Bound to Nicked DNA-Adenylate
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
7
N
N
7
N
N
7
N
N
8
N
N
8
N
N
8
N
N
8
N
N
Biological assembly is a monomer
A
SER
3
D
SER
3
HELX_P
A
MET
25
D
MET
25
1
1
23
A
ALA
33
D
ALA
33
HELX_P
A
HIS
49
D
HIS
49
1
2
17
A
SER
57
D
SER
57
HELX_P
A
ARG
61
D
ARG
61
5
3
5
A
ASP
87
D
ASP
87
HELX_P
A
LEU
102
D
LEU
102
1
4
16
A
ILE
145
D
ILE
145
HELX_P
A
THR
151
D
THR
151
1
5
7
A
PRO
177
D
PRO
177
HELX_P
A
THR
191
D
THR
191
1
6
15
A
ASN
198
D
ASN
198
HELX_P
A
ARG
208
D
ARG
208
1
7
11
A
ASP
211
D
ASP
211
HELX_P
A
LYS
217
D
LYS
217
1
8
7
A
THR
238
D
THR
238
HELX_P
A
GLY
250
D
GLY
250
1
9
13
A
SER
262
D
SER
262
HELX_P
A
ARG
277
D
ARG
277
1
10
16
A
PRO
278
D
PRO
278
HELX_P
A
LEU
280
D
LEU
280
5
11
3
A
SER
293
D
SER
293
HELX_P
A
GLY
301
D
GLY
301
1
12
9
A
ASN
360
D
ASN
360
HELX_P
A
GLY
368
D
GLY
368
1
13
9
A
GLY
381
D
GLY
381
HELX_P
A
VAL
383
D
VAL
383
5
14
3
A
LEU
392
D
LEU
392
HELX_P
A
ARG
395
D
ARG
395
5
15
4
A
GLY
428
D
GLY
428
HELX_P
A
ILE
431
D
ILE
431
5
16
4
A
CYS
432
D
CYS
432
HELX_P
A
SER
445
D
SER
445
1
17
14
A
GLY
455
D
GLY
455
HELX_P
A
LYS
465
D
LYS
465
1
18
11
A
THR
470
D
THR
470
HELX_P
A
LYS
476
D
LYS
476
5
19
7
A
THR
478
D
THR
478
HELX_P
A
GLY
484
D
GLY
484
1
20
7
A
GLY
489
D
GLY
489
HELX_P
A
LYS
504
D
LYS
504
1
21
16
A
THR
507
D
THR
507
HELX_P
A
LEU
515
D
LEU
515
1
22
9
A
GLY
521
D
GLY
521
HELX_P
A
GLY
533
D
GLY
533
1
23
13
A
THR
534
D
THR
534
HELX_P
A
ALA
540
D
ALA
540
1
24
7
A
SER
542
D
SER
542
HELX_P
A
GLN
547
D
GLN
547
1
25
6
A
GLY
553
D
GLY
553
HELX_P
A
ALA
565
D
ALA
565
1
26
13
A
GLU
566
D
GLU
566
HELX_P
A
GLY
580
D
GLY
580
1
27
15
covale
1.603
both
C
DC
37
B
O3'
DC
11
1_555
C
OMC
38
B
P
OMC
12
1_555
covale
1.593
both
C
OMC
38
B
O3'
OMC
12
1_555
C
DC
39
B
P
DC
13
1_555
covale
1.598
both
D
DC
40
C
P
DC
1
1_555
D
AMP
53
E
O3P
AMP
1_555
metalc
2.474
A
CYS
408
D
SG
CYS
408
1_555
A
ZN
672
F
ZN
ZN
1_555
metalc
2.484
A
CYS
411
D
SG
CYS
411
1_555
A
ZN
672
F
ZN
ZN
1_555
metalc
2.471
A
CYS
426
D
SG
CYS
426
1_555
A
ZN
672
F
ZN
ZN
1_555
metalc
2.401
A
CYS
432
D
SG
CYS
432
1_555
A
ZN
672
F
ZN
ZN
1_555
hydrog
WATSON-CRICK
B
DC
1
A
N3
DC
1
1_555
D
DG
52
C
N1
DG
13
1_555
hydrog
WATSON-CRICK
B
DC
1
A
N4
DC
1
1_555
D
DG
52
C
O6
DG
13
1_555
hydrog
WATSON-CRICK
B
DC
1
A
O2
DC
1
1_555
D
DG
52
C
N2
DG
13
1_555
hydrog
WATSON-CRICK
B
DA
2
A
N1
DA
2
1_555
D
DT
51
C
N3
DT
12
1_555
hydrog
WATSON-CRICK
B
DA
2
A
N6
DA
2
1_555
D
DT
51
C
O4
DT
12
1_555
hydrog
WATSON-CRICK
B
DT
3
A
N3
DT
3
1_555
D
DA
50
C
N1
DA
11
1_555
hydrog
WATSON-CRICK
B
DT
3
A
O4
DT
3
1_555
D
DA
50
C
N6
DA
11
1_555
hydrog
WATSON-CRICK
B
DT
4
A
N3
DT
4
1_555
D
DA
49
C
N1
DA
10
1_555
hydrog
WATSON-CRICK
B
DT
4
A
O4
DT
4
1_555
D
DA
49
C
N6
DA
10
1_555
hydrog
WATSON-CRICK
B
DC
5
A
N3
DC
5
1_555
D
DG
48
C
N1
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
5
A
N4
DC
5
1_555
D
DG
48
C
O6
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
5
A
O2
DC
5
1_555
D
DG
48
C
N2
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
6
A
N3
DC
6
1_555
D
DG
47
C
N1
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
6
A
N4
DC
6
1_555
D
DG
47
C
O6
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
6
A
O2
DC
6
1_555
D
DG
47
C
N2
DG
8
1_555
hydrog
WATSON-CRICK
B
DG
7
A
N1
DG
7
1_555
D
DC
46
C
N3
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
7
A
N2
DG
7
1_555
D
DC
46
C
O2
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
7
A
O6
DG
7
1_555
D
DC
46
C
N4
DC
7
1_555
hydrog
WATSON-CRICK
B
DA
8
A
N1
DA
8
1_555
D
DT
45
C
N3
DT
6
1_555
hydrog
WATSON-CRICK
B
DA
8
A
N6
DA
8
1_555
D
DT
45
C
O4
DT
6
1_555
hydrog
WATSON-CRICK
B
DT
9
A
N3
DT
9
1_555
D
DA
44
C
N1
DA
5
1_555
hydrog
WATSON-CRICK
B
DT
9
A
O4
DT
9
1_555
D
DA
44
C
N6
DA
5
1_555
hydrog
WATSON-CRICK
B
DA
10
A
N1
DA
10
1_555
D
DT
43
C
N3
DT
4
1_555
hydrog
WATSON-CRICK
B
DA
10
A
N6
DA
10
1_555
D
DT
43
C
O4
DT
4
1_555
hydrog
WATSON-CRICK
B
DG
11
A
N1
DG
11
1_555
D
DC
42
C
N3
DC
3
1_555
hydrog
WATSON-CRICK
B
DG
11
A
N2
DG
11
1_555
D
DC
42
C
O2
DC
3
1_555
hydrog
WATSON-CRICK
B
DG
11
A
O6
DG
11
1_555
D
DC
42
C
N4
DC
3
1_555
hydrog
WATSON-CRICK
B
DT
12
A
N3
DT
12
1_555
D
DA
41
C
N1
DA
2
1_555
hydrog
WATSON-CRICK
B
DT
12
A
O4
DT
12
1_555
D
DA
41
C
N6
DA
2
1_555
hydrog
WATSON-CRICK
B
DG
13
A
N1
DG
13
1_555
D
DC
40
C
N3
DC
1
1_555
hydrog
WATSON-CRICK
B
DG
13
A
N2
DG
13
1_555
D
DC
40
C
O2
DC
1
1_555
hydrog
WATSON-CRICK
B
DG
13
A
O6
DG
13
1_555
D
DC
40
C
N4
DC
1
1_555
hydrog
WATSON-CRICK
B
DG
14
A
N1
DG
14
1_555
C
DC
39
B
N3
DC
13
1_555
hydrog
WATSON-CRICK
B
DG
14
A
N2
DG
14
1_555
C
DC
39
B
O2
DC
13
1_555
hydrog
WATSON-CRICK
B
DG
14
A
O6
DG
14
1_555
C
DC
39
B
N4
DC
13
1_555
hydrog
WATSON-CRICK
B
DG
15
A
N1
DG
15
1_555
C
OMC
38
B
N3
OMC
12
1_555
hydrog
WATSON-CRICK
B
DG
15
A
N2
DG
15
1_555
C
OMC
38
B
O2
OMC
12
1_555
hydrog
WATSON-CRICK
B
DG
15
A
O6
DG
15
1_555
C
OMC
38
B
N4
OMC
12
1_555
hydrog
WATSON-CRICK
B
DG
16
A
N1
DG
16
1_555
C
DC
37
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
B
DG
16
A
N2
DG
16
1_555
C
DC
37
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
B
DG
16
A
O6
DG
16
1_555
C
DC
37
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
B
DT
17
A
N3
DT
17
1_555
C
DA
36
B
N1
DA
10
1_555
hydrog
WATSON-CRICK
B
DT
17
A
O4
DT
17
1_555
C
DA
36
B
N6
DA
10
1_555
hydrog
WATSON-CRICK
B
DC
18
A
N3
DC
18
1_555
C
DG
35
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
18
A
N4
DC
18
1_555
C
DG
35
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
18
A
O2
DC
18
1_555
C
DG
35
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
B
DG
19
A
N1
DG
19
1_555
C
DC
34
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
19
A
N2
DG
19
1_555
C
DC
34
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
19
A
O6
DG
19
1_555
C
DC
34
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
B
DC
20
A
N3
DC
20
1_555
C
DG
33
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
B
DC
20
A
N4
DC
20
1_555
C
DG
33
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
B
DC
20
A
O2
DC
20
1_555
C
DG
33
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
B
DA
21
A
N1
DA
21
1_555
C
DT
32
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
B
DA
21
A
N6
DA
21
1_555
C
DT
32
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
B
DA
22
A
N1
DA
22
1_555
C
DT
31
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
B
DA
22
A
N6
DA
22
1_555
C
DT
31
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
B
DT
23
A
N3
DT
23
1_555
C
DA
30
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
B
DT
23
A
O4
DT
23
1_555
C
DA
30
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
B
DT
24
A
N3
DT
24
1_555
C
DA
29
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
B
DT
24
A
O4
DT
24
1_555
C
DA
29
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
B
DG
25
A
N1
DG
25
1_555
C
DC
28
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
25
A
N2
DG
25
1_555
C
DC
28
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
25
A
O6
DG
25
1_555
C
DC
28
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
B
DT
26
A
N3
DT
26
1_555
C
DA
27
B
N1
DA
1
1_555
hydrog
WATSON-CRICK
B
DT
26
A
O4
DT
26
1_555
C
DA
27
B
N6
DA
1
1_555
LIGASE/DNA
DNA, Ligase, Protein-DNA complex, LIGASE-DNA COMPLEX
DNLJ_ECOLI
UNP
4
1
P15042
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPML
SLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH
GENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQEQ
MTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR
EVVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHV
HNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVI
AGEAAGSKLAKAQELGIEVIDEAEMLRLLGS
2OWO
PDB
1
2OWO
2OWO
PDB
2
2OWO
2OWO
PDB
3
2OWO
1
671
2OWO
1
671
P15042
A
1
1
671
1
26
2OWO
1
26
2OWO
B
2
1
26
27
39
2OWO
27
39
2OWO
C
3
1
13
40
52
2OWO
40
52
2OWO
D
4
1
13
2
5
4
5
2
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLN
72
D
GLN
72
A
ARG
74
D
ARG
74
A
THR
141
D
THR
141
A
GLU
143
D
GLU
143
A
ASP
83
D
ASP
83
A
VAL
85
D
VAL
85
A
ALA
310
D
ALA
310
A
LYS
314
D
LYS
314
A
ILE
284
D
ILE
284
A
VAL
291
D
VAL
291
A
TRP
110
D
TRP
110
A
LEU
116
D
LEU
116
A
THR
258
D
THR
258
A
CYS
260
D
CYS
260
A
VAL
129
D
VAL
129
A
ALA
134
D
ALA
134
A
LEU
119
D
LEU
119
A
GLU
126
D
GLU
126
A
ARG
167
D
ARG
167
A
PHE
175
D
PHE
175
A
THR
221
D
THR
221
A
GLU
231
D
GLU
231
A
VAL
351
D
VAL
351
A
THR
357
D
THR
357
A
ILE
337
D
ILE
337
A
VAL
348
D
VAL
348
A
GLU
319
D
GLU
319
A
VAL
331
D
VAL
331
A
LYS
374
D
LYS
374
A
ALA
380
D
ALA
380
A
ILE
384
D
ILE
384
A
VAL
390
D
VAL
390
A
VAL
415
D
VAL
415
A
ARG
417
D
ARG
417
A
ALA
424
D
ALA
424
A
CYS
426
D
CYS
426
BINDING SITE FOR RESIDUE ZN A 672
A
ZN
672
Software
4
BINDING SITE FOR RESIDUE SO4 A 673
A
SO4
673
Software
5
BINDING SITE FOR RESIDUE SO4 A 674
A
SO4
674
Software
4
BINDING SITE FOR RESIDUE SO4 A 675
A
SO4
675
Software
5
BINDING SITE FOR RESIDUE SO4 A 676
A
SO4
676
Software
2
BINDING SITE FOR RESIDUE AMP D 53
D
AMP
53
Software
13
A
CYS
408
D
CYS
408
4
1_555
A
CYS
411
D
CYS
411
4
1_555
A
CYS
426
D
CYS
426
4
1_555
A
CYS
432
D
CYS
432
4
1_555
A
ARG
446
D
ARG
446
5
1_555
A
ARG
447
D
ARG
447
5
1_555
A
HOH
922
N
HOH
5
1_555
C
HOH
42
L
HOH
5
1_555
D
DC
40
C
DC
1
5
1_555
A
ARG
74
D
ARG
74
4
1_555
A
ARG
510
D
ARG
510
4
1_555
A
HOH
718
N
HOH
4
1_555
A
HOH
759
N
HOH
4
1_555
A
ASN
95
D
ASN
95
5
1_555
A
GLN
99
D
GLN
99
5
1_555
A
SER
262
D
SER
262
5
1_555
A
ALA
263
D
ALA
263
5
1_555
A
HOH
799
N
HOH
5
1_555
A
HIS
559
D
HIS
559
2
1_555
A
ASN
562
D
ASN
562
2
1_555
A
SER
81
D
SER
81
13
1_555
A
LEU
82
D
LEU
82
13
1_555
A
GLU
113
D
GLU
113
13
1_555
A
LYS
115
D
LYS
115
13
1_555
A
ALA
120
D
ALA
120
13
1_555
A
ARG
136
D
ARG
136
13
1_555
A
GLU
173
D
GLU
173
13
1_555
A
TYR
225
D
TYR
225
13
1_555
A
VAL
288
D
VAL
288
13
1_555
A
LYS
290
D
LYS
290
13
1_555
A
HOH
752
N
HOH
13
1_555
C
HOH
137
L
HOH
13
1_555
D
DC
40
C
DC
1
13
1_555
5
C 1 2 1