0.020520
0.000000
0.000000
0.000000
0.014738
0.000000
0.000000
0.000000
0.010321
0.000000
0.000000
0.000000
Balcewich, M.
Mark, B.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
48.734
67.850
96.894
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C15 H19 N3 O7
353.327
O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRANOSYLIDENE) AMINO-N-PHENYLCARBAMATE
PUGNAc
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
C
N
251
N
C
N
252
N
O
N
253
N
N
N
254
R
C
N
255
R
C
N
256
N
O
N
257
S
C
N
258
N
O
N
259
R
C
N
260
N
C
N
261
N
O
N
262
N
O
N
263
N
C
N
264
N
N
N
265
N
O
N
266
N
C
N
267
N
O
N
268
N
N
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
S
C
N
319
N
C
N
320
N
O
N
321
N
C
N
322
N
C
N
323
N
C
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
N
339
N
O
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
R
C
N
353
N
O
N
354
N
C
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
N
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
N
403
N
O
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
Z
doub
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
Y
271
N
doub
Y
272
N
sing
Y
273
N
sing
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
sing
N
278
N
sing
Y
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
Y
293
N
doub
Y
294
N
sing
Y
295
N
sing
N
296
N
sing
Y
297
N
doub
N
298
N
sing
Y
299
N
doub
N
300
N
sing
Y
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
doub
N
374
N
sing
Y
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
Y
390
N
doub
Y
391
N
sing
Y
392
N
sing
N
393
N
sing
Y
394
N
doub
N
395
N
sing
Y
396
N
doub
N
397
N
sing
Y
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
282
21382
21391
10.1074/jbc.M700084200
17439950
Small molecule inhibitors of a glycoside hydrolase attenuate inducible AmpC-mediated beta-lactam resistance.
2007
10.2210/pdb2oxn/pdb
pdb_00002oxn
100
1
IMAGE PLATE
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU RU200
37888.035
Beta-hexosaminidase
3.2.1.52
1
man
polymer
353.327
O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRANOSYLIDENE) AMINO-N-PHENYLCARBAMATE
1
syn
non-polymer
18.015
water
381
nat
water
N-acetyl-beta-glucosaminidase, Beta-N-acetylhexosaminidase
no
no
MGPLWLDVAGYELSAEDREILQHPTVGGVILFGRNYHDNQQLLALNKAIRQAAKRPILIGVDQEGGRVQRFREGFSRIPP
AQYYARAENGVELAEQGGWLMAAELIAHDVDLSFAPVLDMGFACKAIGNRAFGEDVQTVLKHSSAFLRGMKAVGMATTGK
HFPGHGAVIADSHLETPYDERETIAQDMAIFRAQIEAGVLDAMMPAHVVYPHYDAQPASGSSYWLKQVLREELGFKGIVF
SDDLSMEGAAVMGGPVERSHQALVAGCDMILICNKREAAVEVLDNLPIMEVPQAEALLKKQQFSYSELKRLERWQQASAN
MQRLIEQFSEHHHHHHHHHH
MGPLWLDVAGYELSAEDREILQHPTVGGVILFGRNYHDNQQLLALNKAIRQAAKRPILIGVDQEGGRVQRFREGFSRIPP
AQYYARAENGVELAEQGGWLMAAELIAHDVDLSFAPVLDMGFACKAIGNRAFGEDVQTVLKHSSAFLRGMKAVGMATTGK
HFPGHGAVIADSHLETPYDERETIAQDMAIFRAQIEAGVLDAMMPAHVVYPHYDAQPASGSSYWLKQVLREELGFKGIVF
SDDLSMEGAAVMGGPVERSHQALVAGCDMILICNKREAAVEVLDNLPIMEVPQAEALLKKQQFSYSELKRLERWQQASAN
MQRLIEQFSEHHHHHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Vibrio
Escherichia
sample
nagZ
666
Vibrio cholerae
562
Escherichia coli
BL21(DE3)GOLD
plasmid
pET
1
2.11
41.80
VAPOR DIFFUSION, HANGING DROP
5.8
15% PEG 20000, 100mM Bis-Tris, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Data collection
Database references
Derived calculations
Refinement description
1
0
2007-06-12
1
1
2008-05-01
1
2
2011-07-13
1
3
2014-07-02
1
4
2023-08-30
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Vibrio cholerae NagZ
Vibrio cholerae NagZ product complex
RCSB
Y
RCSB
2007-02-20
REL
REL
OAN
O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRANOSYLIDENE) AMINO-N-PHENYLCARBAMATE
HOH
water
1TR9
PDB
experimental model
OAN
501
2
OAN
OAN
501
A
HOH
1
3
HOH
HOH
502
A
HOH
2
3
HOH
HOH
503
A
HOH
3
3
HOH
HOH
504
A
HOH
4
3
HOH
HOH
505
A
HOH
5
3
HOH
HOH
506
A
HOH
6
3
HOH
HOH
507
A
HOH
7
3
HOH
HOH
508
A
HOH
8
3
HOH
HOH
509
A
HOH
9
3
HOH
HOH
510
A
HOH
10
3
HOH
HOH
511
A
HOH
11
3
HOH
HOH
512
A
HOH
12
3
HOH
HOH
513
A
HOH
13
3
HOH
HOH
514
A
HOH
14
3
HOH
HOH
515
A
HOH
15
3
HOH
HOH
516
A
HOH
16
3
HOH
HOH
517
A
HOH
17
3
HOH
HOH
518
A
HOH
18
3
HOH
HOH
519
A
HOH
19
3
HOH
HOH
520
A
HOH
20
3
HOH
HOH
521
A
HOH
21
3
HOH
HOH
522
A
HOH
22
3
HOH
HOH
523
A
HOH
23
3
HOH
HOH
524
A
HOH
24
3
HOH
HOH
525
A
HOH
25
3
HOH
HOH
526
A
HOH
26
3
HOH
HOH
527
A
HOH
27
3
HOH
HOH
528
A
HOH
28
3
HOH
HOH
529
A
HOH
29
3
HOH
HOH
530
A
HOH
30
3
HOH
HOH
531
A
HOH
31
3
HOH
HOH
532
A
HOH
32
3
HOH
HOH
533
A
HOH
33
3
HOH
HOH
534
A
HOH
34
3
HOH
HOH
535
A
HOH
35
3
HOH
HOH
536
A
HOH
36
3
HOH
HOH
537
A
HOH
37
3
HOH
HOH
538
A
HOH
38
3
HOH
HOH
539
A
HOH
39
3
HOH
HOH
540
A
HOH
40
3
HOH
HOH
541
A
HOH
41
3
HOH
HOH
542
A
HOH
42
3
HOH
HOH
543
A
HOH
43
3
HOH
HOH
544
A
HOH
44
3
HOH
HOH
545
A
HOH
45
3
HOH
HOH
546
A
HOH
46
3
HOH
HOH
547
A
HOH
47
3
HOH
HOH
548
A
HOH
48
3
HOH
HOH
549
A
HOH
49
3
HOH
HOH
550
A
HOH
50
3
HOH
HOH
551
A
HOH
51
3
HOH
HOH
552
A
HOH
52
3
HOH
HOH
553
A
HOH
53
3
HOH
HOH
554
A
HOH
54
3
HOH
HOH
555
A
HOH
55
3
HOH
HOH
556
A
HOH
56
3
HOH
HOH
557
A
HOH
57
3
HOH
HOH
558
A
HOH
58
3
HOH
HOH
559
A
HOH
59
3
HOH
HOH
560
A
HOH
60
3
HOH
HOH
561
A
HOH
61
3
HOH
HOH
562
A
HOH
62
3
HOH
HOH
563
A
HOH
63
3
HOH
HOH
564
A
HOH
64
3
HOH
HOH
565
A
HOH
65
3
HOH
HOH
566
A
HOH
66
3
HOH
HOH
567
A
HOH
67
3
HOH
HOH
568
A
HOH
68
3
HOH
HOH
569
A
HOH
69
3
HOH
HOH
570
A
HOH
70
3
HOH
HOH
571
A
HOH
71
3
HOH
HOH
572
A
HOH
72
3
HOH
HOH
573
A
HOH
73
3
HOH
HOH
574
A
HOH
74
3
HOH
HOH
575
A
HOH
75
3
HOH
HOH
576
A
HOH
76
3
HOH
HOH
577
A
HOH
77
3
HOH
HOH
578
A
HOH
78
3
HOH
HOH
579
A
HOH
79
3
HOH
HOH
580
A
HOH
80
3
HOH
HOH
581
A
HOH
81
3
HOH
HOH
582
A
HOH
82
3
HOH
HOH
583
A
HOH
83
3
HOH
HOH
584
A
HOH
84
3
HOH
HOH
585
A
HOH
85
3
HOH
HOH
586
A
HOH
86
3
HOH
HOH
587
A
HOH
87
3
HOH
HOH
588
A
HOH
88
3
HOH
HOH
589
A
HOH
89
3
HOH
HOH
590
A
HOH
90
3
HOH
HOH
591
A
HOH
91
3
HOH
HOH
592
A
HOH
92
3
HOH
HOH
593
A
HOH
93
3
HOH
HOH
594
A
HOH
94
3
HOH
HOH
595
A
HOH
95
3
HOH
HOH
596
A
HOH
96
3
HOH
HOH
597
A
HOH
97
3
HOH
HOH
598
A
HOH
98
3
HOH
HOH
599
A
HOH
99
3
HOH
HOH
600
A
HOH
100
3
HOH
HOH
601
A
HOH
101
3
HOH
HOH
602
A
HOH
102
3
HOH
HOH
603
A
HOH
103
3
HOH
HOH
604
A
HOH
104
3
HOH
HOH
605
A
HOH
105
3
HOH
HOH
606
A
HOH
106
3
HOH
HOH
607
A
HOH
107
3
HOH
HOH
608
A
HOH
108
3
HOH
HOH
609
A
HOH
109
3
HOH
HOH
610
A
HOH
110
3
HOH
HOH
611
A
HOH
111
3
HOH
HOH
612
A
HOH
112
3
HOH
HOH
613
A
HOH
113
3
HOH
HOH
614
A
HOH
114
3
HOH
HOH
615
A
HOH
115
3
HOH
HOH
616
A
HOH
116
3
HOH
HOH
617
A
HOH
117
3
HOH
HOH
618
A
HOH
118
3
HOH
HOH
619
A
HOH
119
3
HOH
HOH
620
A
HOH
120
3
HOH
HOH
621
A
HOH
121
3
HOH
HOH
622
A
HOH
122
3
HOH
HOH
623
A
HOH
123
3
HOH
HOH
624
A
HOH
124
3
HOH
HOH
625
A
HOH
125
3
HOH
HOH
626
A
HOH
126
3
HOH
HOH
627
A
HOH
127
3
HOH
HOH
628
A
HOH
128
3
HOH
HOH
629
A
HOH
129
3
HOH
HOH
630
A
HOH
130
3
HOH
HOH
631
A
HOH
131
3
HOH
HOH
632
A
HOH
132
3
HOH
HOH
633
A
HOH
133
3
HOH
HOH
634
A
HOH
134
3
HOH
HOH
635
A
HOH
135
3
HOH
HOH
636
A
HOH
136
3
HOH
HOH
637
A
HOH
137
3
HOH
HOH
638
A
HOH
138
3
HOH
HOH
639
A
HOH
139
3
HOH
HOH
640
A
HOH
140
3
HOH
HOH
641
A
HOH
141
3
HOH
HOH
642
A
HOH
142
3
HOH
HOH
643
A
HOH
143
3
HOH
HOH
644
A
HOH
144
3
HOH
HOH
645
A
HOH
145
3
HOH
HOH
646
A
HOH
146
3
HOH
HOH
647
A
HOH
147
3
HOH
HOH
648
A
HOH
148
3
HOH
HOH
649
A
HOH
149
3
HOH
HOH
650
A
HOH
150
3
HOH
HOH
651
A
HOH
151
3
HOH
HOH
652
A
HOH
152
3
HOH
HOH
653
A
HOH
153
3
HOH
HOH
654
A
HOH
154
3
HOH
HOH
655
A
HOH
155
3
HOH
HOH
656
A
HOH
156
3
HOH
HOH
657
A
HOH
157
3
HOH
HOH
658
A
HOH
158
3
HOH
HOH
659
A
HOH
159
3
HOH
HOH
660
A
HOH
160
3
HOH
HOH
661
A
HOH
161
3
HOH
HOH
662
A
HOH
162
3
HOH
HOH
663
A
HOH
163
3
HOH
HOH
664
A
HOH
164
3
HOH
HOH
665
A
HOH
165
3
HOH
HOH
666
A
HOH
166
3
HOH
HOH
667
A
HOH
167
3
HOH
HOH
668
A
HOH
168
3
HOH
HOH
669
A
HOH
169
3
HOH
HOH
670
A
HOH
170
3
HOH
HOH
671
A
HOH
171
3
HOH
HOH
672
A
HOH
172
3
HOH
HOH
673
A
HOH
173
3
HOH
HOH
674
A
HOH
174
3
HOH
HOH
675
A
HOH
175
3
HOH
HOH
676
A
HOH
176
3
HOH
HOH
677
A
HOH
177
3
HOH
HOH
678
A
HOH
178
3
HOH
HOH
679
A
HOH
179
3
HOH
HOH
680
A
HOH
180
3
HOH
HOH
681
A
HOH
181
3
HOH
HOH
682
A
HOH
182
3
HOH
HOH
683
A
HOH
183
3
HOH
HOH
684
A
HOH
184
3
HOH
HOH
685
A
HOH
185
3
HOH
HOH
686
A
HOH
186
3
HOH
HOH
687
A
HOH
187
3
HOH
HOH
688
A
HOH
188
3
HOH
HOH
689
A
HOH
189
3
HOH
HOH
690
A
HOH
190
3
HOH
HOH
691
A
HOH
191
3
HOH
HOH
692
A
HOH
192
3
HOH
HOH
693
A
HOH
193
3
HOH
HOH
694
A
HOH
194
3
HOH
HOH
695
A
HOH
195
3
HOH
HOH
696
A
HOH
196
3
HOH
HOH
697
A
HOH
197
3
HOH
HOH
698
A
HOH
198
3
HOH
HOH
699
A
HOH
199
3
HOH
HOH
700
A
HOH
200
3
HOH
HOH
701
A
HOH
201
3
HOH
HOH
702
A
HOH
202
3
HOH
HOH
703
A
HOH
203
3
HOH
HOH
704
A
HOH
204
3
HOH
HOH
705
A
HOH
205
3
HOH
HOH
706
A
HOH
206
3
HOH
HOH
707
A
HOH
207
3
HOH
HOH
708
A
HOH
208
3
HOH
HOH
709
A
HOH
209
3
HOH
HOH
710
A
HOH
210
3
HOH
HOH
711
A
HOH
211
3
HOH
HOH
712
A
HOH
212
3
HOH
HOH
713
A
HOH
213
3
HOH
HOH
714
A
HOH
214
3
HOH
HOH
715
A
HOH
215
3
HOH
HOH
716
A
HOH
216
3
HOH
HOH
717
A
HOH
217
3
HOH
HOH
718
A
HOH
218
3
HOH
HOH
719
A
HOH
219
3
HOH
HOH
720
A
HOH
220
3
HOH
HOH
721
A
HOH
221
3
HOH
HOH
722
A
HOH
222
3
HOH
HOH
723
A
HOH
223
3
HOH
HOH
724
A
HOH
224
3
HOH
HOH
725
A
HOH
225
3
HOH
HOH
726
A
HOH
226
3
HOH
HOH
727
A
HOH
227
3
HOH
HOH
728
A
HOH
228
3
HOH
HOH
729
A
HOH
229
3
HOH
HOH
730
A
HOH
230
3
HOH
HOH
731
A
HOH
231
3
HOH
HOH
732
A
HOH
232
3
HOH
HOH
733
A
HOH
233
3
HOH
HOH
734
A
HOH
234
3
HOH
HOH
735
A
HOH
235
3
HOH
HOH
736
A
HOH
236
3
HOH
HOH
737
A
HOH
237
3
HOH
HOH
738
A
HOH
238
3
HOH
HOH
739
A
HOH
239
3
HOH
HOH
740
A
HOH
240
3
HOH
HOH
741
A
HOH
241
3
HOH
HOH
742
A
HOH
242
3
HOH
HOH
743
A
HOH
243
3
HOH
HOH
744
A
HOH
244
3
HOH
HOH
745
A
HOH
245
3
HOH
HOH
746
A
HOH
246
3
HOH
HOH
747
A
HOH
247
3
HOH
HOH
748
A
HOH
248
3
HOH
HOH
749
A
HOH
249
3
HOH
HOH
750
A
HOH
250
3
HOH
HOH
751
A
HOH
251
3
HOH
HOH
752
A
HOH
252
3
HOH
HOH
753
A
HOH
253
3
HOH
HOH
754
A
HOH
254
3
HOH
HOH
755
A
HOH
255
3
HOH
HOH
756
A
HOH
256
3
HOH
HOH
757
A
HOH
257
3
HOH
HOH
758
A
HOH
258
3
HOH
HOH
759
A
HOH
259
3
HOH
HOH
760
A
HOH
260
3
HOH
HOH
761
A
HOH
261
3
HOH
HOH
762
A
HOH
262
3
HOH
HOH
763
A
HOH
263
3
HOH
HOH
764
A
HOH
264
3
HOH
HOH
765
A
HOH
265
3
HOH
HOH
766
A
HOH
266
3
HOH
HOH
767
A
HOH
267
3
HOH
HOH
768
A
HOH
268
3
HOH
HOH
769
A
HOH
269
3
HOH
HOH
770
A
HOH
270
3
HOH
HOH
771
A
HOH
271
3
HOH
HOH
772
A
HOH
272
3
HOH
HOH
773
A
HOH
273
3
HOH
HOH
774
A
HOH
274
3
HOH
HOH
775
A
HOH
275
3
HOH
HOH
776
A
HOH
276
3
HOH
HOH
777
A
HOH
277
3
HOH
HOH
778
A
HOH
278
3
HOH
HOH
779
A
HOH
279
3
HOH
HOH
780
A
HOH
280
3
HOH
HOH
781
A
HOH
281
3
HOH
HOH
782
A
HOH
282
3
HOH
HOH
783
A
HOH
283
3
HOH
HOH
784
A
HOH
284
3
HOH
HOH
785
A
HOH
285
3
HOH
HOH
786
A
HOH
286
3
HOH
HOH
787
A
HOH
287
3
HOH
HOH
788
A
HOH
288
3
HOH
HOH
789
A
HOH
289
3
HOH
HOH
790
A
HOH
290
3
HOH
HOH
791
A
HOH
291
3
HOH
HOH
792
A
HOH
292
3
HOH
HOH
793
A
HOH
293
3
HOH
HOH
794
A
HOH
294
3
HOH
HOH
795
A
HOH
295
3
HOH
HOH
796
A
HOH
296
3
HOH
HOH
797
A
HOH
297
3
HOH
HOH
798
A
HOH
298
3
HOH
HOH
799
A
HOH
299
3
HOH
HOH
800
A
HOH
300
3
HOH
HOH
801
A
HOH
301
3
HOH
HOH
802
A
HOH
302
3
HOH
HOH
803
A
HOH
303
3
HOH
HOH
804
A
HOH
304
3
HOH
HOH
805
A
HOH
305
3
HOH
HOH
806
A
HOH
306
3
HOH
HOH
807
A
HOH
307
3
HOH
HOH
808
A
HOH
308
3
HOH
HOH
809
A
HOH
309
3
HOH
HOH
810
A
HOH
310
3
HOH
HOH
811
A
HOH
311
3
HOH
HOH
812
A
HOH
312
3
HOH
HOH
813
A
HOH
313
3
HOH
HOH
814
A
HOH
314
3
HOH
HOH
815
A
HOH
315
3
HOH
HOH
816
A
HOH
316
3
HOH
HOH
817
A
HOH
317
3
HOH
HOH
818
A
HOH
318
3
HOH
HOH
819
A
HOH
319
3
HOH
HOH
820
A
HOH
320
3
HOH
HOH
821
A
HOH
321
3
HOH
HOH
822
A
HOH
322
3
HOH
HOH
823
A
HOH
323
3
HOH
HOH
824
A
HOH
324
3
HOH
HOH
825
A
HOH
325
3
HOH
HOH
826
A
HOH
326
3
HOH
HOH
827
A
HOH
327
3
HOH
HOH
828
A
HOH
328
3
HOH
HOH
829
A
HOH
329
3
HOH
HOH
830
A
HOH
330
3
HOH
HOH
831
A
HOH
331
3
HOH
HOH
832
A
HOH
332
3
HOH
HOH
833
A
HOH
333
3
HOH
HOH
834
A
HOH
334
3
HOH
HOH
835
A
HOH
335
3
HOH
HOH
836
A
HOH
336
3
HOH
HOH
837
A
HOH
337
3
HOH
HOH
838
A
HOH
338
3
HOH
HOH
839
A
HOH
339
3
HOH
HOH
840
A
HOH
340
3
HOH
HOH
841
A
HOH
341
3
HOH
HOH
842
A
HOH
342
3
HOH
HOH
843
A
HOH
343
3
HOH
HOH
844
A
HOH
344
3
HOH
HOH
845
A
HOH
345
3
HOH
HOH
846
A
HOH
346
3
HOH
HOH
847
A
HOH
347
3
HOH
HOH
848
A
HOH
348
3
HOH
HOH
849
A
HOH
349
3
HOH
HOH
850
A
HOH
350
3
HOH
HOH
851
A
HOH
351
3
HOH
HOH
852
A
HOH
352
3
HOH
HOH
853
A
HOH
353
3
HOH
HOH
854
A
HOH
354
3
HOH
HOH
855
A
HOH
355
3
HOH
HOH
856
A
HOH
356
3
HOH
HOH
857
A
HOH
357
3
HOH
HOH
858
A
HOH
358
3
HOH
HOH
859
A
HOH
359
3
HOH
HOH
860
A
HOH
360
3
HOH
HOH
861
A
HOH
361
3
HOH
HOH
862
A
HOH
362
3
HOH
HOH
863
A
HOH
363
3
HOH
HOH
864
A
HOH
364
3
HOH
HOH
865
A
HOH
365
3
HOH
HOH
866
A
HOH
366
3
HOH
HOH
867
A
HOH
367
3
HOH
HOH
868
A
HOH
368
3
HOH
HOH
869
A
HOH
369
3
HOH
HOH
870
A
HOH
370
3
HOH
HOH
871
A
HOH
371
3
HOH
HOH
872
A
HOH
372
3
HOH
HOH
873
A
HOH
373
3
HOH
HOH
874
A
HOH
374
3
HOH
HOH
875
A
HOH
375
3
HOH
HOH
876
A
HOH
376
3
HOH
HOH
877
A
HOH
377
3
HOH
HOH
878
A
HOH
378
3
HOH
HOH
879
A
HOH
379
3
HOH
HOH
880
A
HOH
380
3
HOH
HOH
881
A
HOH
381
3
HOH
HOH
882
A
MET
1
n
1
MET
1
A
GLY
2
n
2
GLY
2
A
PRO
3
n
3
PRO
3
A
LEU
4
n
4
LEU
4
A
TRP
5
n
5
TRP
5
A
LEU
6
n
6
LEU
6
A
ASP
7
n
7
ASP
7
A
VAL
8
n
8
VAL
8
A
ALA
9
n
9
ALA
9
A
GLY
10
n
10
GLY
10
A
TYR
11
n
11
TYR
11
A
GLU
12
n
12
GLU
12
A
LEU
13
n
13
LEU
13
A
SER
14
n
14
SER
14
A
ALA
15
n
15
ALA
15
A
GLU
16
n
16
GLU
16
A
ASP
17
n
17
ASP
17
A
ARG
18
n
18
ARG
18
A
GLU
19
n
19
GLU
19
A
ILE
20
n
20
ILE
20
A
LEU
21
n
21
LEU
21
A
GLN
22
n
22
GLN
22
A
HIS
23
n
23
HIS
23
A
PRO
24
n
24
PRO
24
A
THR
25
n
25
THR
25
A
VAL
26
n
26
VAL
26
A
GLY
27
n
27
GLY
27
A
GLY
28
n
28
GLY
28
A
VAL
29
n
29
VAL
29
A
ILE
30
n
30
ILE
30
A
LEU
31
n
31
LEU
31
A
PHE
32
n
32
PHE
32
A
GLY
33
n
33
GLY
33
A
ARG
34
n
34
ARG
34
A
ASN
35
n
35
ASN
35
A
TYR
36
n
36
TYR
36
A
HIS
37
n
37
HIS
37
A
ASP
38
n
38
ASP
38
A
ASN
39
n
39
ASN
39
A
GLN
40
n
40
GLN
40
A
GLN
41
n
41
GLN
41
A
LEU
42
n
42
LEU
42
A
LEU
43
n
43
LEU
43
A
ALA
44
n
44
ALA
44
A
LEU
45
n
45
LEU
45
A
ASN
46
n
46
ASN
46
A
LYS
47
n
47
LYS
47
A
ALA
48
n
48
ALA
48
A
ILE
49
n
49
ILE
49
A
ARG
50
n
50
ARG
50
A
GLN
51
n
51
GLN
51
A
ALA
52
n
52
ALA
52
A
ALA
53
n
53
ALA
53
A
LYS
54
n
54
LYS
54
A
ARG
55
n
55
ARG
55
A
PRO
56
n
56
PRO
56
A
ILE
57
n
57
ILE
57
A
LEU
58
n
58
LEU
58
A
ILE
59
n
59
ILE
59
A
GLY
60
n
60
GLY
60
A
VAL
61
n
61
VAL
61
A
ASP
62
n
62
ASP
62
A
GLN
63
n
63
GLN
63
A
GLU
64
n
64
GLU
64
A
GLY
65
n
65
GLY
65
A
GLY
66
n
66
GLY
66
A
ARG
67
n
67
ARG
67
A
VAL
68
n
68
VAL
68
A
GLN
69
n
69
GLN
69
A
ARG
70
n
70
ARG
70
A
PHE
71
n
71
PHE
71
A
ARG
72
n
72
ARG
72
A
GLU
73
n
73
GLU
73
A
GLY
74
n
74
GLY
74
A
PHE
75
n
75
PHE
75
A
SER
76
n
76
SER
76
A
ARG
77
n
77
ARG
77
A
ILE
78
n
78
ILE
78
A
PRO
79
n
79
PRO
79
A
PRO
80
n
80
PRO
80
A
ALA
81
n
81
ALA
81
A
GLN
82
n
82
GLN
82
A
TYR
83
n
83
TYR
83
A
TYR
84
n
84
TYR
84
A
ALA
85
n
85
ALA
85
A
ARG
86
n
86
ARG
86
A
ALA
87
n
87
ALA
87
A
GLU
88
n
88
GLU
88
A
ASN
89
n
89
ASN
89
A
GLY
90
n
90
GLY
90
A
VAL
91
n
91
VAL
91
A
GLU
92
n
92
GLU
92
A
LEU
93
n
93
LEU
93
A
ALA
94
n
94
ALA
94
A
GLU
95
n
95
GLU
95
A
GLN
96
n
96
GLN
96
A
GLY
97
n
97
GLY
97
A
GLY
98
n
98
GLY
98
A
TRP
99
n
99
TRP
99
A
LEU
100
n
100
LEU
100
A
MET
101
n
101
MET
101
A
ALA
102
n
102
ALA
102
A
ALA
103
n
103
ALA
103
A
GLU
104
n
104
GLU
104
A
LEU
105
n
105
LEU
105
A
ILE
106
n
106
ILE
106
A
ALA
107
n
107
ALA
107
A
HIS
108
n
108
HIS
108
A
ASP
109
n
109
ASP
109
A
VAL
110
n
110
VAL
110
A
ASP
111
n
111
ASP
111
A
LEU
112
n
112
LEU
112
A
SER
113
n
113
SER
113
A
PHE
114
n
114
PHE
114
A
ALA
115
n
115
ALA
115
A
PRO
116
n
116
PRO
116
A
VAL
117
n
117
VAL
117
A
LEU
118
n
118
LEU
118
A
ASP
119
n
119
ASP
119
A
MET
120
n
120
MET
120
A
GLY
121
n
121
GLY
121
A
PHE
122
n
122
PHE
122
A
ALA
123
n
123
ALA
123
A
CYS
124
n
124
CYS
124
A
LYS
125
n
125
LYS
125
A
ALA
126
n
126
ALA
126
A
ILE
127
n
127
ILE
127
A
GLY
128
n
128
GLY
128
A
ASN
129
n
129
ASN
129
A
ARG
130
n
130
ARG
130
A
ALA
131
n
131
ALA
131
A
PHE
132
n
132
PHE
132
A
GLY
133
n
133
GLY
133
A
GLU
134
n
134
GLU
134
A
ASP
135
n
135
ASP
135
A
VAL
136
n
136
VAL
136
A
GLN
137
n
137
GLN
137
A
THR
138
n
138
THR
138
A
VAL
139
n
139
VAL
139
A
LEU
140
n
140
LEU
140
A
LYS
141
n
141
LYS
141
A
HIS
142
n
142
HIS
142
A
SER
143
n
143
SER
143
A
SER
144
n
144
SER
144
A
ALA
145
n
145
ALA
145
A
PHE
146
n
146
PHE
146
A
LEU
147
n
147
LEU
147
A
ARG
148
n
148
ARG
148
A
GLY
149
n
149
GLY
149
A
MET
150
n
150
MET
150
A
LYS
151
n
151
LYS
151
A
ALA
152
n
152
ALA
152
A
VAL
153
n
153
VAL
153
A
GLY
154
n
154
GLY
154
A
MET
155
n
155
MET
155
A
ALA
156
n
156
ALA
156
A
THR
157
n
157
THR
157
A
THR
158
n
158
THR
158
A
GLY
159
n
159
GLY
159
A
LYS
160
n
160
LYS
160
A
HIS
161
n
161
HIS
161
A
PHE
162
n
162
PHE
162
A
PRO
163
n
163
PRO
163
A
GLY
164
n
164
GLY
164
A
HIS
165
n
165
HIS
165
A
GLY
166
n
166
GLY
166
A
ALA
167
n
167
ALA
167
A
VAL
168
n
168
VAL
168
A
ILE
169
n
169
ILE
169
A
ALA
170
n
170
ALA
170
A
ASP
171
n
171
ASP
171
A
SER
172
n
172
SER
172
A
HIS
173
n
173
HIS
173
A
LEU
174
n
174
LEU
174
A
GLU
175
n
175
GLU
175
A
THR
176
n
176
THR
176
A
PRO
177
n
177
PRO
177
A
TYR
178
n
178
TYR
178
A
ASP
179
n
179
ASP
179
A
GLU
180
n
180
GLU
180
A
ARG
181
n
181
ARG
181
A
GLU
182
n
182
GLU
182
A
THR
183
n
183
THR
183
A
ILE
184
n
184
ILE
184
A
ALA
185
n
185
ALA
185
A
GLN
186
n
186
GLN
186
A
ASP
187
n
187
ASP
187
A
MET
188
n
188
MET
188
A
ALA
189
n
189
ALA
189
A
ILE
190
n
190
ILE
190
A
PHE
191
n
191
PHE
191
A
ARG
192
n
192
ARG
192
A
ALA
193
n
193
ALA
193
A
GLN
194
n
194
GLN
194
A
ILE
195
n
195
ILE
195
A
GLU
196
n
196
GLU
196
A
ALA
197
n
197
ALA
197
A
GLY
198
n
198
GLY
198
A
VAL
199
n
199
VAL
199
A
LEU
200
n
200
LEU
200
A
ASP
201
n
201
ASP
201
A
ALA
202
n
202
ALA
202
A
MET
203
n
203
MET
203
A
MET
204
n
204
MET
204
A
PRO
205
n
205
PRO
205
A
ALA
206
n
206
ALA
206
A
HIS
207
n
207
HIS
207
A
VAL
208
n
208
VAL
208
A
VAL
209
n
209
VAL
209
A
TYR
210
n
210
TYR
210
A
PRO
211
n
211
PRO
211
A
HIS
212
n
212
HIS
212
A
TYR
213
n
213
TYR
213
A
ASP
214
n
214
ASP
214
A
ALA
215
n
215
ALA
215
A
GLN
216
n
216
GLN
216
A
PRO
217
n
217
PRO
217
A
ALA
218
n
218
ALA
218
A
SER
219
n
219
SER
219
A
GLY
220
n
220
GLY
220
A
SER
221
n
221
SER
221
A
SER
222
n
222
SER
222
A
TYR
223
n
223
TYR
223
A
TRP
224
n
224
TRP
224
A
LEU
225
n
225
LEU
225
A
LYS
226
n
226
LYS
226
A
GLN
227
n
227
GLN
227
A
VAL
228
n
228
VAL
228
A
LEU
229
n
229
LEU
229
A
ARG
230
n
230
ARG
230
A
GLU
231
n
231
GLU
231
A
GLU
232
n
232
GLU
232
A
LEU
233
n
233
LEU
233
A
GLY
234
n
234
GLY
234
A
PHE
235
n
235
PHE
235
A
LYS
236
n
236
LYS
236
A
GLY
237
n
237
GLY
237
A
ILE
238
n
238
ILE
238
A
VAL
239
n
239
VAL
239
A
PHE
240
n
240
PHE
240
A
SER
241
n
241
SER
241
A
ASP
242
n
242
ASP
242
A
ASP
243
n
243
ASP
243
A
LEU
244
n
244
LEU
244
A
SER
245
n
245
SER
245
A
MET
246
n
246
MET
246
A
GLU
247
n
247
GLU
247
A
GLY
248
n
248
GLY
248
A
ALA
249
n
249
ALA
249
A
ALA
250
n
250
ALA
250
A
VAL
251
n
251
VAL
251
A
MET
252
n
252
MET
252
A
GLY
253
n
253
GLY
253
A
GLY
254
n
254
GLY
254
A
PRO
255
n
255
PRO
255
A
VAL
256
n
256
VAL
256
A
GLU
257
n
257
GLU
257
A
ARG
258
n
258
ARG
258
A
SER
259
n
259
SER
259
A
HIS
260
n
260
HIS
260
A
GLN
261
n
261
GLN
261
A
ALA
262
n
262
ALA
262
A
LEU
263
n
263
LEU
263
A
VAL
264
n
264
VAL
264
A
ALA
265
n
265
ALA
265
A
GLY
266
n
266
GLY
266
A
CYS
267
n
267
CYS
267
A
ASP
268
n
268
ASP
268
A
MET
269
n
269
MET
269
A
ILE
270
n
270
ILE
270
A
LEU
271
n
271
LEU
271
A
ILE
272
n
272
ILE
272
A
CYS
273
n
273
CYS
273
A
ASN
274
n
274
ASN
274
A
LYS
275
n
275
LYS
275
A
ARG
276
n
276
ARG
276
A
GLU
277
n
277
GLU
277
A
ALA
278
n
278
ALA
278
A
ALA
279
n
279
ALA
279
A
VAL
280
n
280
VAL
280
A
GLU
281
n
281
GLU
281
A
VAL
282
n
282
VAL
282
A
LEU
283
n
283
LEU
283
A
ASP
284
n
284
ASP
284
A
ASN
285
n
285
ASN
285
A
LEU
286
n
286
LEU
286
A
PRO
287
n
287
PRO
287
A
ILE
288
n
288
ILE
288
A
MET
289
n
289
MET
289
A
GLU
290
n
290
GLU
290
A
VAL
291
n
291
VAL
291
A
PRO
292
n
292
PRO
292
A
GLN
293
n
293
GLN
293
A
ALA
294
n
294
ALA
294
A
GLU
295
n
295
GLU
295
A
ALA
296
n
296
ALA
296
A
LEU
297
n
297
LEU
297
A
LEU
298
n
298
LEU
298
A
LYS
299
n
299
LYS
299
A
LYS
300
n
300
LYS
300
A
GLN
301
n
301
GLN
301
A
GLN
302
n
302
GLN
302
A
PHE
303
n
303
PHE
303
A
SER
304
n
304
SER
304
A
TYR
305
n
305
TYR
305
A
SER
306
n
306
SER
306
A
GLU
307
n
307
GLU
307
A
LEU
308
n
308
LEU
308
A
LYS
309
n
309
LYS
309
A
ARG
310
n
310
ARG
310
A
LEU
311
n
311
LEU
311
A
GLU
312
n
312
GLU
312
A
ARG
313
n
313
ARG
313
A
TRP
314
n
314
TRP
314
A
GLN
315
n
315
GLN
315
A
GLN
316
n
316
GLN
316
A
ALA
317
n
317
ALA
317
A
SER
318
n
318
SER
318
A
ALA
319
n
319
ALA
319
A
ASN
320
n
320
ASN
320
A
MET
321
n
321
MET
321
A
GLN
322
n
322
GLN
322
A
ARG
323
n
323
ARG
323
A
LEU
324
n
324
LEU
324
A
ILE
325
n
325
ILE
325
A
GLU
326
n
326
GLU
326
A
GLN
327
n
327
GLN
327
A
PHE
328
n
328
PHE
328
A
SER
329
n
329
SER
329
A
GLU
330
n
330
GLU
330
A
HIS
331
n
331
HIS
331
A
HIS
332
n
332
HIS
332
A
HIS
333
n
333
HIS
333
A
n
334
334
A
n
335
335
A
n
336
336
A
n
337
337
A
n
338
338
A
n
339
339
A
n
340
340
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
112
A
O
LEU
112
A
N
ILE
59
A
N
ILE
59
A
O
GLY
60
A
O
GLY
60
A
N
LEU
31
A
N
LEU
31
A
O
GLY
27
A
O
GLY
27
A
N
LEU
4
A
N
LEU
4
A
N
TRP
5
A
N
TRP
5
A
O
ILE
270
A
O
ILE
270
A
N
MET
269
A
N
MET
269
A
O
VAL
239
A
O
VAL
239
A
O
PHE
240
A
O
PHE
240
A
N
MET
203
A
N
MET
203
A
O
MET
204
A
O
MET
204
A
N
GLY
159
A
N
GLY
159
A
N
GLY
65
A
N
GLY
65
A
O
VAL
68
A
O
VAL
68
1
A
HIS
334
A
HIS
334
1
Y
1
A
HIS
335
A
HIS
335
1
Y
1
A
HIS
336
A
HIS
336
1
Y
1
A
HIS
337
A
HIS
337
1
Y
1
A
HIS
338
A
HIS
338
1
Y
1
A
HIS
339
A
HIS
339
1
Y
1
A
HIS
340
A
HIS
340
1
Y
1
A
A
O
O
HOH
HOH
717
880
2.06
1
A
LYS
54
59.91
19.12
1
A
ASN
89
-98.32
41.11
1
A
ILE
127
-92.06
-71.87
1
A
LYS
275
-155.25
71.08
8.485
-0.060
0.000
0.000
-0.440
0.000
0.500
0.951
0.928
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.199
0.168
0.17
1.700
55.560
1783
35779
5.000
99.140
1.615
0.056
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.108
0.102
0.800
0.800
1.400
1TR9
MAXIMUM LIKELIHOOD
MASK
1.700
55.560
381
2998
25
0
2592
0.011
0.021
2681
0.002
0.020
1814
1.298
1.959
3625
0.905
3.000
4405
5.639
5.000
334
35.772
24.077
130
11.905
15.000
449
11.768
15.000
19
0.079
0.200
387
0.005
0.020
3038
0.001
0.020
548
0.212
0.200
561
0.200
0.200
2009
0.174
0.200
1298
0.083
0.200
1343
0.132
0.200
242
0.218
0.200
12
0.321
0.200
59
0.135
0.200
37
1.137
1.500
2152
0.203
1.500
681
1.171
2.000
2634
2.397
3.000
1171
3.394
4.500
991
0.274
0.223
1.744
99
2309
2408
20
91.280
1.7
55.560
2OXN
35845
35787
0.061
1
27.2
7.1
99.3
0.167
1.70
1.79
8.4
1
5.1
95.5
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
5.2.0019
data extraction
PDB
sw-help@rcsb.rutgers.edu
April. 3, 2006
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
2.000
data collection
CrystalClear
data reduction
MOSFLM
data scaling
SCALA
phasing
PHASER
Vibrio cholerae family 3 glycoside hydrolase (NagZ) in complex with PUGNAc
1
N
N
2
N
N
3
N
N
A
SER
14
A
SER
14
HELX_P
A
GLN
22
A
GLN
22
1
1
9
A
PHE
32
A
PHE
32
HELX_P
A
TYR
36
A
TYR
36
5
2
5
A
ASP
38
A
ASP
38
HELX_P
A
LYS
54
A
LYS
54
1
3
17
A
PRO
80
A
PRO
80
HELX_P
A
ALA
87
A
ALA
87
5
4
8
A
ASN
89
A
ASN
89
HELX_P
A
ALA
107
A
ALA
107
1
5
19
A
ILE
127
A
ILE
127
HELX_P
A
ALA
131
A
ALA
131
5
6
5
A
ASP
135
A
ASP
135
HELX_P
A
VAL
153
A
VAL
153
1
7
19
A
ILE
184
A
ILE
184
HELX_P
A
GLY
198
A
GLY
198
1
8
15
A
PRO
217
A
PRO
217
HELX_P
A
GLY
220
A
GLY
220
5
9
4
A
SER
221
A
SER
221
HELX_P
A
LYS
226
A
LYS
226
1
10
6
A
SER
245
A
SER
245
HELX_P
A
GLU
247
A
GLU
247
5
11
3
A
GLY
248
A
GLY
248
HELX_P
A
GLY
253
A
GLY
253
1
12
6
A
GLY
254
A
GLY
254
HELX_P
A
GLY
266
A
GLY
266
1
13
13
A
LYS
275
A
LYS
275
HELX_P
A
LEU
286
A
LEU
286
1
14
12
A
VAL
291
A
VAL
291
HELX_P
A
LEU
298
A
LEU
298
5
15
8
A
SER
304
A
SER
304
HELX_P
A
ARG
310
A
ARG
310
1
16
7
A
LEU
311
A
LEU
311
HELX_P
A
SER
329
A
SER
329
1
17
19
HYDROLASE
TIM-barrel, HYDROLASE
A
ALA
115
A
ALA
115
1
A
PRO
116
A
PRO
116
7.78
A
LYS
160
A
LYS
160
1
A
HIS
161
A
HIS
161
-0.73
A
PHE
162
A
PHE
162
1
A
PRO
163
A
PRO
163
1.58
NAGZ_VIBCH
UNP
1
1
Q9KU37
MGPLWLDVAGYELSAEDREILQHPTVGGVILFGRNYHDNQQLLALNKAIRQAAKRPILIGVDQEGGRVQRFREGFSRIPP
AQYYARAENGVELAEQGGWLMAAELIAHDVDLSFAPVLDMGFACKAIGNRAFGEDVQTVLKHSSAFLRGMKAVGMATTGK
HFPGHGAVIADSHLETPYDERETIAQDMAIFRAQIEAGVLDAMMPAHVVYPHYDAQPASGSSYWLKQVLREELGFKGIVF
SDDLSMEGAAVMGGPVERSHQALVAGCDMILICNKREAAVEVLDNLPIMEVPQAEALLKKQQFSYSELKRLERWQQASAN
MQRLIEQFSE
1
330
2OXN
1
330
Q9KU37
A
1
1
330
1
expression tag
HIS
331
2OXN
A
Q9KU37
UNP
331
1
expression tag
HIS
332
2OXN
A
Q9KU37
UNP
332
1
expression tag
HIS
333
2OXN
A
Q9KU37
UNP
333
1
expression tag
HIS
334
2OXN
A
Q9KU37
UNP
334
1
expression tag
HIS
335
2OXN
A
Q9KU37
UNP
335
1
expression tag
HIS
336
2OXN
A
Q9KU37
UNP
336
1
expression tag
HIS
337
2OXN
A
Q9KU37
UNP
337
1
expression tag
HIS
338
2OXN
A
Q9KU37
UNP
338
1
expression tag
HIS
339
2OXN
A
Q9KU37
UNP
339
1
expression tag
HIS
340
2OXN
A
Q9KU37
UNP
340
8
2
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
A
LEU
112
A
LEU
112
A
SER
113
A
SER
113
A
LEU
58
A
LEU
58
A
VAL
61
A
VAL
61
A
VAL
26
A
VAL
26
A
LEU
31
A
LEU
31
A
LEU
4
A
LEU
4
A
LEU
6
A
LEU
6
A
MET
269
A
MET
269
A
LEU
271
A
LEU
271
A
ILE
238
A
ILE
238
A
ASP
243
A
ASP
243
A
ALA
202
A
ALA
202
A
PRO
205
A
PRO
205
A
THR
158
A
THR
158
A
PHE
162
A
PHE
162
A
GLN
63
A
GLN
63
A
GLY
65
A
GLY
65
A
VAL
68
A
VAL
68
A
GLN
69
A
GLN
69
BINDING SITE FOR RESIDUE OAN A 501
A
OAN
501
Software
11
A
GLU
19
A
GLU
19
11
4_545
A
GLN
22
A
GLN
22
11
4_545
A
ILE
30
A
ILE
30
11
1_555
A
ASP
62
A
ASP
62
11
1_555
A
ARG
130
A
ARG
130
11
1_555
A
LYS
160
A
LYS
160
11
1_555
A
HIS
161
A
HIS
161
11
1_555
A
MET
204
A
MET
204
11
1_555
A
ASP
243
A
ASP
243
11
1_555
A
MET
246
A
MET
246
11
1_555
A
HOH
846
C
HOH
11
1_555
19
P 21 21 21