0.032168
0.003614
0.002023
0.000000
0.027530
0.013739
0.000000
0.000000
0.025056
0.00000
0.00000
0.00000
Ojala, J.R.M.
Pikkarainen, T.
Tuuttila, A.
Sandalova, T.
Tryggvason, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
116.30
90.35
96.41
31.087
36.553
44.605
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
S
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
R
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
N
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
282
16654
16666
10.1074/jbc.M701750200
17405873
Crystal structure of the cysteine-rich domain of scavenger receptor MARCO reveals the presence of a basic and an acidic cluster that both contribute to ligand recognition.
2007
10.2210/pdb2oya/pdb
pdb_00002oya
100
1
CCD
2003-02-10
MAR CCD 130 mm
SINGLE WAVELENGTH
M
x-ray
1
1.09700
1.0
I711
MAX II
1.09700
SYNCHROTRON
MAX II BEAMLINE I711
11337.281
Macrophage receptor MARCO
C-terminal domain, scavenger receptor cysteine-rich domain (SRCR)
2
man
polymer
96.063
SULFATE ION
3
syn
non-polymer
18.015
water
192
nat
water
Macrophage receptor with collagenous structure
no
no
APLAQRVRIMGGTNRGRAEVYYNNEWGTICDDDWDNNDATVFCRMLGYSRGRALSSYGGGSGNIWLDNVNCRGTENSLWD
CSKNSWGNHNCVHNEDAGVECS
APLAQRVRIMGGTNRGRAEVYYNNEWGTICDDDWDNNDATVFCRMLGYSRGRALSSYGGGSGNIWLDNVNCRGTENSLWD
CSKNSWGNHNCVHNEDAGVECS
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
C57BL/6
human
Homo
sample
Marco
10090
Mus musculus
embryonic kidney cells
293-EBNA
9606
Homo sapiens
plasmid
pCEP-PU
1
1.99
38.11
VAPOR DIFFUSION, HANGING DROP
6.0
7% PEG 4000, 0.1M Bis-Tris, 0.1M Lithium sulfate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
diffrn_source
entity_src_gen
struct_biol
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Data collection
Database references
Derived calculations
Source and taxonomy
Data collection
Database references
Refinement description
1
0
2007-04-17
1
1
2008-05-01
1
2
2011-07-13
1
3
2018-03-07
1
4
2021-03-31
1
5
2023-08-30
_diffrn_source.pdbx_synchrotron_site
_entity_src_gen.pdbx_host_org_cell_line
_entity_src_gen.pdbx_host_org_strain
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
the same protein in dimeric form
RCSB
Y
RCSB
2007-02-21
REL
REL
SO4
SULFATE ION
HOH
water
2OY3
PDB ENTRY 2OY3
PDB
experimental model
SO4
201
2
SO4
SO4
201
A
SO4
202
2
SO4
SO4
202
A
SO4
203
2
SO4
SO4
203
B
HOH
1
3
HOH
HOH
1
A
HOH
2
3
HOH
HOH
2
A
HOH
4
3
HOH
HOH
4
A
HOH
5
3
HOH
HOH
5
A
HOH
6
3
HOH
HOH
6
A
HOH
12
3
HOH
HOH
12
A
HOH
13
3
HOH
HOH
13
A
HOH
14
3
HOH
HOH
14
A
HOH
15
3
HOH
HOH
15
A
HOH
20
3
HOH
HOH
20
A
HOH
22
3
HOH
HOH
22
A
HOH
25
3
HOH
HOH
25
A
HOH
29
3
HOH
HOH
29
A
HOH
30
3
HOH
HOH
30
A
HOH
33
3
HOH
HOH
33
A
HOH
35
3
HOH
HOH
35
A
HOH
36
3
HOH
HOH
36
A
HOH
40
3
HOH
HOH
40
A
HOH
43
3
HOH
HOH
43
A
HOH
46
3
HOH
HOH
46
A
HOH
47
3
HOH
HOH
47
A
HOH
48
3
HOH
HOH
48
A
HOH
49
3
HOH
HOH
49
A
HOH
50
3
HOH
HOH
50
A
HOH
53
3
HOH
HOH
53
A
HOH
55
3
HOH
HOH
55
A
HOH
62
3
HOH
HOH
62
A
HOH
64
3
HOH
HOH
64
A
HOH
65
3
HOH
HOH
65
A
HOH
66
3
HOH
HOH
66
A
HOH
68
3
HOH
HOH
68
A
HOH
71
3
HOH
HOH
71
A
HOH
72
3
HOH
HOH
72
A
HOH
73
3
HOH
HOH
73
A
HOH
75
3
HOH
HOH
75
A
HOH
76
3
HOH
HOH
76
A
HOH
80
3
HOH
HOH
80
A
HOH
82
3
HOH
HOH
82
A
HOH
83
3
HOH
HOH
83
A
HOH
85
3
HOH
HOH
85
A
HOH
89
3
HOH
HOH
89
A
HOH
90
3
HOH
HOH
90
A
HOH
91
3
HOH
HOH
91
A
HOH
92
3
HOH
HOH
92
A
HOH
94
3
HOH
HOH
94
A
HOH
95
3
HOH
HOH
95
A
HOH
97
3
HOH
HOH
97
A
HOH
100
3
HOH
HOH
100
A
HOH
101
3
HOH
HOH
101
A
HOH
104
3
HOH
HOH
104
A
HOH
106
3
HOH
HOH
106
A
HOH
113
3
HOH
HOH
113
A
HOH
114
3
HOH
HOH
114
A
HOH
122
3
HOH
HOH
122
A
HOH
123
3
HOH
HOH
123
A
HOH
124
3
HOH
HOH
124
A
HOH
126
3
HOH
HOH
126
A
HOH
129
3
HOH
HOH
129
A
HOH
130
3
HOH
HOH
130
A
HOH
132
3
HOH
HOH
132
A
HOH
134
3
HOH
HOH
134
A
HOH
135
3
HOH
HOH
135
A
HOH
136
3
HOH
HOH
136
A
HOH
139
3
HOH
HOH
139
A
HOH
140
3
HOH
HOH
140
A
HOH
143
3
HOH
HOH
143
A
HOH
144
3
HOH
HOH
144
A
HOH
146
3
HOH
HOH
146
A
HOH
149
3
HOH
HOH
149
A
HOH
150
3
HOH
HOH
150
A
HOH
152
3
HOH
HOH
152
A
HOH
158
3
HOH
HOH
158
A
HOH
159
3
HOH
HOH
159
A
HOH
160
3
HOH
HOH
160
A
HOH
161
3
HOH
HOH
161
A
HOH
162
3
HOH
HOH
162
A
HOH
164
3
HOH
HOH
164
A
HOH
165
3
HOH
HOH
165
A
HOH
168
3
HOH
HOH
168
A
HOH
170
3
HOH
HOH
170
A
HOH
172
3
HOH
HOH
172
A
HOH
175
3
HOH
HOH
175
A
HOH
176
3
HOH
HOH
176
A
HOH
178
3
HOH
HOH
178
A
HOH
179
3
HOH
HOH
179
A
HOH
180
3
HOH
HOH
180
A
HOH
181
3
HOH
HOH
181
A
HOH
184
3
HOH
HOH
184
A
HOH
185
3
HOH
HOH
185
A
HOH
187
3
HOH
HOH
187
A
HOH
188
3
HOH
HOH
188
A
HOH
190
3
HOH
HOH
190
A
HOH
191
3
HOH
HOH
191
A
HOH
192
3
HOH
HOH
192
A
HOH
3
3
HOH
HOH
3
B
HOH
7
3
HOH
HOH
7
B
HOH
8
3
HOH
HOH
8
B
HOH
9
3
HOH
HOH
9
B
HOH
10
3
HOH
HOH
10
B
HOH
11
3
HOH
HOH
11
B
HOH
16
3
HOH
HOH
16
B
HOH
17
3
HOH
HOH
17
B
HOH
18
3
HOH
HOH
18
B
HOH
19
3
HOH
HOH
19
B
HOH
21
3
HOH
HOH
21
B
HOH
23
3
HOH
HOH
23
B
HOH
24
3
HOH
HOH
24
B
HOH
26
3
HOH
HOH
26
B
HOH
27
3
HOH
HOH
27
B
HOH
28
3
HOH
HOH
28
B
HOH
31
3
HOH
HOH
31
B
HOH
32
3
HOH
HOH
32
B
HOH
34
3
HOH
HOH
34
B
HOH
37
3
HOH
HOH
37
B
HOH
38
3
HOH
HOH
38
B
HOH
39
3
HOH
HOH
39
B
HOH
41
3
HOH
HOH
41
B
HOH
42
3
HOH
HOH
42
B
HOH
44
3
HOH
HOH
44
B
HOH
45
3
HOH
HOH
45
B
HOH
51
3
HOH
HOH
51
B
HOH
52
3
HOH
HOH
52
B
HOH
54
3
HOH
HOH
54
B
HOH
56
3
HOH
HOH
56
B
HOH
57
3
HOH
HOH
57
B
HOH
58
3
HOH
HOH
58
B
HOH
59
3
HOH
HOH
59
B
HOH
60
3
HOH
HOH
60
B
HOH
61
3
HOH
HOH
61
B
HOH
63
3
HOH
HOH
63
B
HOH
67
3
HOH
HOH
67
B
HOH
69
3
HOH
HOH
69
B
HOH
70
3
HOH
HOH
70
B
HOH
74
3
HOH
HOH
74
B
HOH
77
3
HOH
HOH
77
B
HOH
78
3
HOH
HOH
78
B
HOH
79
3
HOH
HOH
79
B
HOH
81
3
HOH
HOH
81
B
HOH
84
3
HOH
HOH
84
B
HOH
86
3
HOH
HOH
86
B
HOH
87
3
HOH
HOH
87
B
HOH
88
3
HOH
HOH
88
B
HOH
93
3
HOH
HOH
93
B
HOH
96
3
HOH
HOH
96
B
HOH
98
3
HOH
HOH
98
B
HOH
99
3
HOH
HOH
99
B
HOH
102
3
HOH
HOH
102
B
HOH
103
3
HOH
HOH
103
B
HOH
105
3
HOH
HOH
105
B
HOH
107
3
HOH
HOH
107
B
HOH
108
3
HOH
HOH
108
B
HOH
109
3
HOH
HOH
109
B
HOH
110
3
HOH
HOH
110
B
HOH
111
3
HOH
HOH
111
B
HOH
112
3
HOH
HOH
112
B
HOH
115
3
HOH
HOH
115
B
HOH
116
3
HOH
HOH
116
B
HOH
117
3
HOH
HOH
117
B
HOH
118
3
HOH
HOH
118
B
HOH
119
3
HOH
HOH
119
B
HOH
120
3
HOH
HOH
120
B
HOH
121
3
HOH
HOH
121
B
HOH
125
3
HOH
HOH
125
B
HOH
127
3
HOH
HOH
127
B
HOH
128
3
HOH
HOH
128
B
HOH
131
3
HOH
HOH
131
B
HOH
133
3
HOH
HOH
133
B
HOH
137
3
HOH
HOH
137
B
HOH
138
3
HOH
HOH
138
B
HOH
141
3
HOH
HOH
141
B
HOH
142
3
HOH
HOH
142
B
HOH
145
3
HOH
HOH
145
B
HOH
147
3
HOH
HOH
147
B
HOH
148
3
HOH
HOH
148
B
HOH
151
3
HOH
HOH
151
B
HOH
153
3
HOH
HOH
153
B
HOH
154
3
HOH
HOH
154
B
HOH
155
3
HOH
HOH
155
B
HOH
156
3
HOH
HOH
156
B
HOH
157
3
HOH
HOH
157
B
HOH
163
3
HOH
HOH
163
B
HOH
166
3
HOH
HOH
166
B
HOH
167
3
HOH
HOH
167
B
HOH
169
3
HOH
HOH
169
B
HOH
171
3
HOH
HOH
171
B
HOH
173
3
HOH
HOH
173
B
HOH
174
3
HOH
HOH
174
B
HOH
177
3
HOH
HOH
177
B
HOH
182
3
HOH
HOH
182
B
HOH
183
3
HOH
HOH
183
B
HOH
186
3
HOH
HOH
186
B
HOH
189
3
HOH
HOH
189
B
0.428
0.519
3.000
3.000
14.910
14.910
ALA
417
n
1
ALA
417
A
PRO
418
n
2
PRO
418
A
LEU
419
n
3
LEU
419
A
ALA
420
n
4
ALA
420
A
GLN
421
n
5
GLN
421
A
ARG
422
n
6
ARG
422
A
VAL
423
n
7
VAL
423
A
ARG
424
n
8
ARG
424
A
ILE
425
n
9
ILE
425
A
MET
426
n
10
MET
426
A
GLY
427
n
11
GLY
427
A
GLY
428
n
12
GLY
428
A
THR
429
n
13
THR
429
A
ASN
430
n
14
ASN
430
A
ARG
431
n
15
ARG
431
A
GLY
432
n
16
GLY
432
A
ARG
433
n
17
ARG
433
A
ALA
434
n
18
ALA
434
A
GLU
435
n
19
GLU
435
A
VAL
436
n
20
VAL
436
A
TYR
437
n
21
TYR
437
A
TYR
438
n
22
TYR
438
A
ASN
439
n
23
ASN
439
A
ASN
440
n
24
ASN
440
A
GLU
441
n
25
GLU
441
A
TRP
442
n
26
TRP
442
A
GLY
443
n
27
GLY
443
A
THR
444
n
28
THR
444
A
ILE
445
n
29
ILE
445
A
CYS
446
n
30
CYS
446
A
ASP
447
n
31
ASP
447
A
ASP
448
n
32
ASP
448
A
ASP
449
n
33
ASP
449
A
TRP
450
n
34
TRP
450
A
ASP
451
n
35
ASP
451
A
ASN
452
n
36
ASN
452
A
ASN
453
n
37
ASN
453
A
ASP
454
n
38
ASP
454
A
ALA
455
n
39
ALA
455
A
THR
456
n
40
THR
456
A
VAL
457
n
41
VAL
457
A
PHE
458
n
42
PHE
458
A
CYS
459
n
43
CYS
459
A
ARG
460
n
44
ARG
460
A
MET
461
n
45
MET
461
A
LEU
462
n
46
LEU
462
A
GLY
463
n
47
GLY
463
A
TYR
464
n
48
TYR
464
A
SER
465
n
49
SER
465
A
ARG
466
n
50
ARG
466
A
GLY
467
n
51
GLY
467
A
ARG
468
n
52
ARG
468
A
ALA
469
n
53
ALA
469
A
LEU
470
n
54
LEU
470
A
SER
471
n
55
SER
471
A
SER
472
n
56
SER
472
A
TYR
473
n
57
TYR
473
A
GLY
474
n
58
GLY
474
A
GLY
475
n
59
GLY
475
A
GLY
476
n
60
GLY
476
A
SER
477
n
61
SER
477
A
GLY
478
n
62
GLY
478
A
ASN
479
n
63
ASN
479
A
ILE
480
n
64
ILE
480
A
TRP
481
n
65
TRP
481
A
LEU
482
n
66
LEU
482
A
ASP
483
n
67
ASP
483
A
ASN
484
n
68
ASN
484
A
VAL
485
n
69
VAL
485
A
ASN
486
n
70
ASN
486
A
CYS
487
n
71
CYS
487
A
ARG
488
n
72
ARG
488
A
GLY
489
n
73
GLY
489
A
THR
490
n
74
THR
490
A
GLU
491
n
75
GLU
491
A
ASN
492
n
76
ASN
492
A
SER
493
n
77
SER
493
A
LEU
494
n
78
LEU
494
A
TRP
495
n
79
TRP
495
A
ASP
496
n
80
ASP
496
A
CYS
497
n
81
CYS
497
A
SER
498
n
82
SER
498
A
LYS
499
n
83
LYS
499
A
ASN
500
n
84
ASN
500
A
SER
501
n
85
SER
501
A
TRP
502
n
86
TRP
502
A
GLY
503
n
87
GLY
503
A
ASN
504
n
88
ASN
504
A
HIS
505
n
89
HIS
505
A
ASN
506
n
90
ASN
506
A
CYS
507
n
91
CYS
507
A
VAL
508
n
92
VAL
508
A
HIS
509
n
93
HIS
509
A
ASN
510
n
94
ASN
510
A
GLU
511
n
95
GLU
511
A
ASP
512
n
96
ASP
512
A
ALA
513
n
97
ALA
513
A
GLY
514
n
98
GLY
514
A
VAL
515
n
99
VAL
515
A
GLU
516
n
100
GLU
516
A
CYS
517
n
101
CYS
517
A
SER
518
n
102
SER
518
A
ALA
417
n
1
ALA
417
B
PRO
418
n
2
PRO
418
B
LEU
419
n
3
LEU
419
B
ALA
420
n
4
ALA
420
B
GLN
421
n
5
GLN
421
B
ARG
422
n
6
ARG
422
B
VAL
423
n
7
VAL
423
B
ARG
424
n
8
ARG
424
B
ILE
425
n
9
ILE
425
B
MET
426
n
10
MET
426
B
GLY
427
n
11
GLY
427
B
GLY
428
n
12
GLY
428
B
THR
429
n
13
THR
429
B
ASN
430
n
14
ASN
430
B
ARG
431
n
15
ARG
431
B
GLY
432
n
16
GLY
432
B
ARG
433
n
17
ARG
433
B
ALA
434
n
18
ALA
434
B
GLU
435
n
19
GLU
435
B
VAL
436
n
20
VAL
436
B
TYR
437
n
21
TYR
437
B
TYR
438
n
22
TYR
438
B
ASN
439
n
23
ASN
439
B
ASN
440
n
24
ASN
440
B
GLU
441
n
25
GLU
441
B
TRP
442
n
26
TRP
442
B
GLY
443
n
27
GLY
443
B
THR
444
n
28
THR
444
B
ILE
445
n
29
ILE
445
B
CYS
446
n
30
CYS
446
B
ASP
447
n
31
ASP
447
B
ASP
448
n
32
ASP
448
B
ASP
449
n
33
ASP
449
B
TRP
450
n
34
TRP
450
B
ASP
451
n
35
ASP
451
B
ASN
452
n
36
ASN
452
B
ASN
453
n
37
ASN
453
B
ASP
454
n
38
ASP
454
B
ALA
455
n
39
ALA
455
B
THR
456
n
40
THR
456
B
VAL
457
n
41
VAL
457
B
PHE
458
n
42
PHE
458
B
CYS
459
n
43
CYS
459
B
ARG
460
n
44
ARG
460
B
MET
461
n
45
MET
461
B
LEU
462
n
46
LEU
462
B
GLY
463
n
47
GLY
463
B
TYR
464
n
48
TYR
464
B
SER
465
n
49
SER
465
B
ARG
466
n
50
ARG
466
B
GLY
467
n
51
GLY
467
B
ARG
468
n
52
ARG
468
B
ALA
469
n
53
ALA
469
B
LEU
470
n
54
LEU
470
B
SER
471
n
55
SER
471
B
SER
472
n
56
SER
472
B
TYR
473
n
57
TYR
473
B
GLY
474
n
58
GLY
474
B
GLY
475
n
59
GLY
475
B
GLY
476
n
60
GLY
476
B
SER
477
n
61
SER
477
B
GLY
478
n
62
GLY
478
B
ASN
479
n
63
ASN
479
B
ILE
480
n
64
ILE
480
B
TRP
481
n
65
TRP
481
B
LEU
482
n
66
LEU
482
B
ASP
483
n
67
ASP
483
B
ASN
484
n
68
ASN
484
B
VAL
485
n
69
VAL
485
B
ASN
486
n
70
ASN
486
B
CYS
487
n
71
CYS
487
B
ARG
488
n
72
ARG
488
B
GLY
489
n
73
GLY
489
B
THR
490
n
74
THR
490
B
GLU
491
n
75
GLU
491
B
ASN
492
n
76
ASN
492
B
SER
493
n
77
SER
493
B
LEU
494
n
78
LEU
494
B
TRP
495
n
79
TRP
495
B
ASP
496
n
80
ASP
496
B
CYS
497
n
81
CYS
497
B
SER
498
n
82
SER
498
B
LYS
499
n
83
LYS
499
B
ASN
500
n
84
ASN
500
B
SER
501
n
85
SER
501
B
TRP
502
n
86
TRP
502
B
GLY
503
n
87
GLY
503
B
ASN
504
n
88
ASN
504
B
HIS
505
n
89
HIS
505
B
ASN
506
n
90
ASN
506
B
CYS
507
n
91
CYS
507
B
VAL
508
n
92
VAL
508
B
HIS
509
n
93
HIS
509
B
ASN
510
n
94
ASN
510
B
GLU
511
n
95
GLU
511
B
ASP
512
n
96
ASP
512
B
ALA
513
n
97
ALA
513
B
GLY
514
n
98
GLY
514
B
VAL
515
n
99
VAL
515
B
GLU
516
n
100
GLU
516
B
CYS
517
n
101
CYS
517
B
SER
518
n
102
SER
518
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
software_defined_assembly
PISA,PQS
2
dimeric
3210
-42
9760
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
470
A
N
LEU
54
A
O
GLY
514
A
O
GLY
98
A
O
CYS
517
A
O
CYS
101
A
N
ASN
430
A
N
ASN
14
A
N
MET
426
A
N
MET
10
B
O
ARG
433
B
O
ARG
17
B
N
ASN
430
B
N
ASN
14
B
O
CYS
517
B
O
CYS
101
B
O
GLY
514
B
O
GLY
98
B
N
LEU
470
B
N
LEU
54
A
O
TRP
481
A
O
TRP
65
A
N
THR
444
A
N
THR
28
A
O
GLY
443
A
O
GLY
27
A
N
VAL
436
A
N
VAL
20
A
N
MET
426
A
N
MET
10
B
O
ARG
433
B
O
ARG
17
B
N
VAL
436
B
N
VAL
20
B
O
GLY
443
B
O
GLY
27
B
N
THR
444
B
N
THR
28
B
O
TRP
481
B
O
TRP
65
11.590
-0.010
-0.180
-0.040
0.080
-0.060
-0.160
0.959
0.940
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.191
0.15
0.154
1.770
14.912
1644
17081
16364
10.000
95.810
2.108
0.069
RANDOM
1
isotropic
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.140
0.126
0.800
0.800
1.400
PDB ENTRY 2OY3
MAXIMUM LIKELIHOOD
MASK
1.770
14.912
192
1791
15
0
1584
0.010
0.021
1695
1.248
1.895
2316
6.313
5.000
216
35.828
24.343
99
10.453
15.000
245
14.790
15.000
16
0.092
0.200
221
0.005
0.020
1398
0.188
0.200
808
0.296
0.200
1158
0.125
0.200
144
0.188
0.200
62
0.143
0.200
33
0.761
1.500
1060
1.203
2.000
1649
2.137
3.000
753
3.098
4.500
667
0.255
0.184
1.815
110
1072
1182
20
90.230
1.77
14.912
2OYA
17081
16364
0.013
00
0.037
0.037
1
13.800
3.500
95.400
0.074
1.77
1.86
9.1
7835
2282
0.074
1
3.40
89.40
data scaling
Phil Evans
pre@mrc-lmb.cam.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/INDEX.html
SCALA
other
phasing
A. Vagin
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
other
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
data extraction
PDB
sw-help@rcsb.rutgers.edu
April. 3, 2006
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
2.000
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
Crystal structure analysis of the dimeric form of the SRCR domain of mouse MARCO
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
Biological unit is a monomer. There are two biological units in the asymmetric unit (chains A & B)
A
PRO
418
A
PRO
2
HELX_P
A
GLN
421
A
GLN
5
5
1
4
A
ASP
451
A
ASP
35
HELX_P
A
LEU
462
A
LEU
46
1
2
12
A
SER
493
A
SER
77
HELX_P
A
CYS
497
A
CYS
81
5
3
5
A
VAL
508
A
VAL
92
HELX_P
A
ASP
512
A
ASP
96
5
4
5
B
PRO
418
B
PRO
2
HELX_P
B
GLN
421
B
GLN
5
5
5
4
B
ASP
451
B
ASP
35
HELX_P
B
LEU
462
B
LEU
46
1
6
12
B
SER
493
B
SER
77
HELX_P
B
CYS
497
B
CYS
81
5
7
5
B
VAL
508
B
VAL
92
HELX_P
B
ASP
512
B
ASP
96
5
8
5
disulf
2.047
A
CYS
446
A
SG
CYS
30
1_555
A
CYS
507
A
SG
CYS
91
1_555
disulf
2.020
A
CYS
459
A
SG
CYS
43
1_555
A
CYS
517
A
SG
CYS
101
1_555
disulf
2.041
A
CYS
487
A
SG
CYS
71
1_555
A
CYS
497
A
SG
CYS
81
1_555
disulf
2.038
B
CYS
446
B
SG
CYS
30
1_555
B
CYS
507
B
SG
CYS
91
1_555
disulf
2.040
B
CYS
459
B
SG
CYS
43
1_555
B
CYS
517
B
SG
CYS
101
1_555
disulf
2.044
B
CYS
487
B
SG
CYS
71
1_555
B
CYS
497
B
SG
CYS
81
1_555
LIGAND BINDING PROTEIN
Extracellular matrix, Scavenger receptor cysteine-rich (SRCR), macrophage receptor, ligand binding, basic cluster, acidic cluster, sulfate binding, dimer, LIGAND BINDING PROTEIN
MARCO_MOUSE
UNP
1
421
Q60754
QRVRIMGGTNRGRAEVYYNNEWGTICDDDWDNNDATVFCRMLGYSRGRALSSYGGGSGNIWLDNVNCRGTENSLWDCSKN
SWGNHNCVHNEDAGVECS
421
518
2OYA
421
518
Q60754
A
1
5
102
421
518
2OYA
421
518
Q60754
B
1
5
102
1
cloning artifact
ALA
417
2OYA
A
Q60754
UNP
1
1
cloning artifact
PRO
418
2OYA
A
Q60754
UNP
2
1
cloning artifact
LEU
419
2OYA
A
Q60754
UNP
3
1
cloning artifact
ALA
420
2OYA
A
Q60754
UNP
4
2
cloning artifact
ALA
417
2OYA
B
Q60754
UNP
1
2
cloning artifact
PRO
418
2OYA
B
Q60754
UNP
2
2
cloning artifact
LEU
419
2OYA
B
Q60754
UNP
3
2
cloning artifact
ALA
420
2OYA
B
Q60754
UNP
4
6
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
ARG
466
A
ARG
50
A
LEU
470
A
LEU
54
A
GLY
514
A
GLY
98
A
SER
518
A
SER
102
A
VAL
423
A
VAL
7
A
TYR
438
A
TYR
22
B
VAL
423
B
VAL
7
B
TYR
438
B
TYR
22
B
GLY
514
B
GLY
98
B
SER
518
B
SER
102
B
ARG
466
B
ARG
50
B
LEU
470
B
LEU
54
A
ILE
480
A
ILE
64
A
LEU
482
A
LEU
66
A
GLU
441
A
GLU
25
A
ILE
445
A
ILE
29
A
VAL
423
A
VAL
7
A
TYR
438
A
TYR
22
B
VAL
423
B
VAL
7
B
TYR
438
B
TYR
22
B
GLU
441
B
GLU
25
B
ILE
445
B
ILE
29
B
ILE
480
B
ILE
64
B
LEU
482
B
LEU
66
BINDING SITE FOR RESIDUE SO4 A 201
A
SO4
201
Software
7
BINDING SITE FOR RESIDUE SO4 A 202
A
SO4
202
Software
5
BINDING SITE FOR RESIDUE SO4 B 203
B
SO4
203
Software
4
A
HOH
85
F
HOH
7
1_555
A
HOH
175
F
HOH
7
1_555
A
HOH
178
F
HOH
7
1_555
A
SER
501
A
SER
85
7
1_555
A
TRP
502
A
TRP
86
7
1_555
B
HOH
166
G
HOH
7
1_556
B
ARG
488
B
ARG
72
7
1_456
A
HOH
22
F
HOH
5
1_555
A
HOH
40
F
HOH
5
1_555
A
HOH
179
F
HOH
5
1_555
A
VAL
508
A
VAL
92
5
1_555
A
HIS
509
A
HIS
93
5
1_555
A
HOH
191
F
HOH
4
1_655
A
ARG
431
A
ARG
15
4
1_655
A
ARG
468
A
ARG
52
4
1_655
B
ARG
460
B
ARG
44
4
1_555
1
P 1