0.032168 0.003614 0.002023 0.000000 0.027530 0.013739 0.000000 0.000000 0.025056 0.00000 0.00000 0.00000 Ojala, J.R.M. Pikkarainen, T. Tuuttila, A. Sandalova, T. Tryggvason, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 116.30 90.35 96.41 31.087 36.553 44.605 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N S N 305 N O N 306 N O N 307 N O N 308 N O N 309 N N N 310 S C N 311 N C N 312 N O N 313 R C N 314 N O N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N N Y 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C N 364 N O N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C N 382 N C N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub Y 326 N sing Y 327 N sing N 328 N sing Y 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing Y 355 N doub N 356 N sing Y 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 282 16654 16666 10.1074/jbc.M701750200 17405873 Crystal structure of the cysteine-rich domain of scavenger receptor MARCO reveals the presence of a basic and an acidic cluster that both contribute to ligand recognition. 2007 10.2210/pdb2oya/pdb pdb_00002oya 100 1 CCD 2003-02-10 MAR CCD 130 mm SINGLE WAVELENGTH M x-ray 1 1.09700 1.0 I711 MAX II 1.09700 SYNCHROTRON MAX II BEAMLINE I711 11337.281 Macrophage receptor MARCO C-terminal domain, scavenger receptor cysteine-rich domain (SRCR) 2 man polymer 96.063 SULFATE ION 3 syn non-polymer 18.015 water 192 nat water Macrophage receptor with collagenous structure no no APLAQRVRIMGGTNRGRAEVYYNNEWGTICDDDWDNNDATVFCRMLGYSRGRALSSYGGGSGNIWLDNVNCRGTENSLWD CSKNSWGNHNCVHNEDAGVECS APLAQRVRIMGGTNRGRAEVYYNNEWGTICDDDWDNNDATVFCRMLGYSRGRALSSYGGGSGNIWLDNVNCRGTENSLWD CSKNSWGNHNCVHNEDAGVECS A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus C57BL/6 human Homo sample Marco 10090 Mus musculus embryonic kidney cells 293-EBNA 9606 Homo sapiens plasmid pCEP-PU 1 1.99 38.11 VAPOR DIFFUSION, HANGING DROP 6.0 7% PEG 4000, 0.1M Bis-Tris, 0.1M Lithium sulfate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 diffrn_source entity_src_gen struct_biol struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Version format compliance Derived calculations Version format compliance Data collection Data collection Database references Derived calculations Source and taxonomy Data collection Database references Refinement description 1 0 2007-04-17 1 1 2008-05-01 1 2 2011-07-13 1 3 2018-03-07 1 4 2021-03-31 1 5 2023-08-30 _diffrn_source.pdbx_synchrotron_site _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_strain _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _database_2.pdbx_DOI _database_2.pdbx_database_accession the same protein in dimeric form RCSB Y RCSB 2007-02-21 REL REL SO4 SULFATE ION HOH water 2OY3 PDB ENTRY 2OY3 PDB experimental model SO4 201 2 SO4 SO4 201 A SO4 202 2 SO4 SO4 202 A SO4 203 2 SO4 SO4 203 B HOH 1 3 HOH HOH 1 A HOH 2 3 HOH HOH 2 A HOH 4 3 HOH HOH 4 A HOH 5 3 HOH HOH 5 A HOH 6 3 HOH HOH 6 A HOH 12 3 HOH HOH 12 A HOH 13 3 HOH HOH 13 A HOH 14 3 HOH HOH 14 A HOH 15 3 HOH HOH 15 A HOH 20 3 HOH HOH 20 A HOH 22 3 HOH HOH 22 A HOH 25 3 HOH HOH 25 A HOH 29 3 HOH HOH 29 A HOH 30 3 HOH HOH 30 A HOH 33 3 HOH HOH 33 A HOH 35 3 HOH HOH 35 A HOH 36 3 HOH HOH 36 A HOH 40 3 HOH HOH 40 A HOH 43 3 HOH HOH 43 A HOH 46 3 HOH HOH 46 A HOH 47 3 HOH HOH 47 A HOH 48 3 HOH HOH 48 A HOH 49 3 HOH HOH 49 A HOH 50 3 HOH HOH 50 A HOH 53 3 HOH HOH 53 A HOH 55 3 HOH HOH 55 A HOH 62 3 HOH HOH 62 A HOH 64 3 HOH HOH 64 A HOH 65 3 HOH HOH 65 A HOH 66 3 HOH HOH 66 A HOH 68 3 HOH HOH 68 A HOH 71 3 HOH HOH 71 A HOH 72 3 HOH HOH 72 A HOH 73 3 HOH HOH 73 A HOH 75 3 HOH HOH 75 A HOH 76 3 HOH HOH 76 A HOH 80 3 HOH HOH 80 A HOH 82 3 HOH HOH 82 A HOH 83 3 HOH HOH 83 A HOH 85 3 HOH HOH 85 A HOH 89 3 HOH HOH 89 A HOH 90 3 HOH HOH 90 A HOH 91 3 HOH HOH 91 A HOH 92 3 HOH HOH 92 A HOH 94 3 HOH HOH 94 A HOH 95 3 HOH HOH 95 A HOH 97 3 HOH HOH 97 A HOH 100 3 HOH HOH 100 A HOH 101 3 HOH HOH 101 A HOH 104 3 HOH HOH 104 A HOH 106 3 HOH HOH 106 A HOH 113 3 HOH HOH 113 A HOH 114 3 HOH HOH 114 A HOH 122 3 HOH HOH 122 A HOH 123 3 HOH HOH 123 A HOH 124 3 HOH HOH 124 A HOH 126 3 HOH HOH 126 A HOH 129 3 HOH HOH 129 A HOH 130 3 HOH HOH 130 A HOH 132 3 HOH HOH 132 A HOH 134 3 HOH HOH 134 A HOH 135 3 HOH HOH 135 A HOH 136 3 HOH HOH 136 A HOH 139 3 HOH HOH 139 A HOH 140 3 HOH HOH 140 A HOH 143 3 HOH HOH 143 A HOH 144 3 HOH HOH 144 A HOH 146 3 HOH HOH 146 A HOH 149 3 HOH HOH 149 A HOH 150 3 HOH HOH 150 A HOH 152 3 HOH HOH 152 A HOH 158 3 HOH HOH 158 A HOH 159 3 HOH HOH 159 A HOH 160 3 HOH HOH 160 A HOH 161 3 HOH HOH 161 A HOH 162 3 HOH HOH 162 A HOH 164 3 HOH HOH 164 A HOH 165 3 HOH HOH 165 A HOH 168 3 HOH HOH 168 A HOH 170 3 HOH HOH 170 A HOH 172 3 HOH HOH 172 A HOH 175 3 HOH HOH 175 A HOH 176 3 HOH HOH 176 A HOH 178 3 HOH HOH 178 A HOH 179 3 HOH HOH 179 A HOH 180 3 HOH HOH 180 A HOH 181 3 HOH HOH 181 A HOH 184 3 HOH HOH 184 A HOH 185 3 HOH HOH 185 A HOH 187 3 HOH HOH 187 A HOH 188 3 HOH HOH 188 A HOH 190 3 HOH HOH 190 A HOH 191 3 HOH HOH 191 A HOH 192 3 HOH HOH 192 A HOH 3 3 HOH HOH 3 B HOH 7 3 HOH HOH 7 B HOH 8 3 HOH HOH 8 B HOH 9 3 HOH HOH 9 B HOH 10 3 HOH HOH 10 B HOH 11 3 HOH HOH 11 B HOH 16 3 HOH HOH 16 B HOH 17 3 HOH HOH 17 B HOH 18 3 HOH HOH 18 B HOH 19 3 HOH HOH 19 B HOH 21 3 HOH HOH 21 B HOH 23 3 HOH HOH 23 B HOH 24 3 HOH HOH 24 B HOH 26 3 HOH HOH 26 B HOH 27 3 HOH HOH 27 B HOH 28 3 HOH HOH 28 B HOH 31 3 HOH HOH 31 B HOH 32 3 HOH HOH 32 B HOH 34 3 HOH HOH 34 B HOH 37 3 HOH HOH 37 B HOH 38 3 HOH HOH 38 B HOH 39 3 HOH HOH 39 B HOH 41 3 HOH HOH 41 B HOH 42 3 HOH HOH 42 B HOH 44 3 HOH HOH 44 B HOH 45 3 HOH HOH 45 B HOH 51 3 HOH HOH 51 B HOH 52 3 HOH HOH 52 B HOH 54 3 HOH HOH 54 B HOH 56 3 HOH HOH 56 B HOH 57 3 HOH HOH 57 B HOH 58 3 HOH HOH 58 B HOH 59 3 HOH HOH 59 B HOH 60 3 HOH HOH 60 B HOH 61 3 HOH HOH 61 B HOH 63 3 HOH HOH 63 B HOH 67 3 HOH HOH 67 B HOH 69 3 HOH HOH 69 B HOH 70 3 HOH HOH 70 B HOH 74 3 HOH HOH 74 B HOH 77 3 HOH HOH 77 B HOH 78 3 HOH HOH 78 B HOH 79 3 HOH HOH 79 B HOH 81 3 HOH HOH 81 B HOH 84 3 HOH HOH 84 B HOH 86 3 HOH HOH 86 B HOH 87 3 HOH HOH 87 B HOH 88 3 HOH HOH 88 B HOH 93 3 HOH HOH 93 B HOH 96 3 HOH HOH 96 B HOH 98 3 HOH HOH 98 B HOH 99 3 HOH HOH 99 B HOH 102 3 HOH HOH 102 B HOH 103 3 HOH HOH 103 B HOH 105 3 HOH HOH 105 B HOH 107 3 HOH HOH 107 B HOH 108 3 HOH HOH 108 B HOH 109 3 HOH HOH 109 B HOH 110 3 HOH HOH 110 B HOH 111 3 HOH HOH 111 B HOH 112 3 HOH HOH 112 B HOH 115 3 HOH HOH 115 B HOH 116 3 HOH HOH 116 B HOH 117 3 HOH HOH 117 B HOH 118 3 HOH HOH 118 B HOH 119 3 HOH HOH 119 B HOH 120 3 HOH HOH 120 B HOH 121 3 HOH HOH 121 B HOH 125 3 HOH HOH 125 B HOH 127 3 HOH HOH 127 B HOH 128 3 HOH HOH 128 B HOH 131 3 HOH HOH 131 B HOH 133 3 HOH HOH 133 B HOH 137 3 HOH HOH 137 B HOH 138 3 HOH HOH 138 B HOH 141 3 HOH HOH 141 B HOH 142 3 HOH HOH 142 B HOH 145 3 HOH HOH 145 B HOH 147 3 HOH HOH 147 B HOH 148 3 HOH HOH 148 B HOH 151 3 HOH HOH 151 B HOH 153 3 HOH HOH 153 B HOH 154 3 HOH HOH 154 B HOH 155 3 HOH HOH 155 B HOH 156 3 HOH HOH 156 B HOH 157 3 HOH HOH 157 B HOH 163 3 HOH HOH 163 B HOH 166 3 HOH HOH 166 B HOH 167 3 HOH HOH 167 B HOH 169 3 HOH HOH 169 B HOH 171 3 HOH HOH 171 B HOH 173 3 HOH HOH 173 B HOH 174 3 HOH HOH 174 B HOH 177 3 HOH HOH 177 B HOH 182 3 HOH HOH 182 B HOH 183 3 HOH HOH 183 B HOH 186 3 HOH HOH 186 B HOH 189 3 HOH HOH 189 B 0.428 0.519 3.000 3.000 14.910 14.910 ALA 417 n 1 ALA 417 A PRO 418 n 2 PRO 418 A LEU 419 n 3 LEU 419 A ALA 420 n 4 ALA 420 A GLN 421 n 5 GLN 421 A ARG 422 n 6 ARG 422 A VAL 423 n 7 VAL 423 A ARG 424 n 8 ARG 424 A ILE 425 n 9 ILE 425 A MET 426 n 10 MET 426 A GLY 427 n 11 GLY 427 A GLY 428 n 12 GLY 428 A THR 429 n 13 THR 429 A ASN 430 n 14 ASN 430 A ARG 431 n 15 ARG 431 A GLY 432 n 16 GLY 432 A ARG 433 n 17 ARG 433 A ALA 434 n 18 ALA 434 A GLU 435 n 19 GLU 435 A VAL 436 n 20 VAL 436 A TYR 437 n 21 TYR 437 A TYR 438 n 22 TYR 438 A ASN 439 n 23 ASN 439 A ASN 440 n 24 ASN 440 A GLU 441 n 25 GLU 441 A TRP 442 n 26 TRP 442 A GLY 443 n 27 GLY 443 A THR 444 n 28 THR 444 A ILE 445 n 29 ILE 445 A CYS 446 n 30 CYS 446 A ASP 447 n 31 ASP 447 A ASP 448 n 32 ASP 448 A ASP 449 n 33 ASP 449 A TRP 450 n 34 TRP 450 A ASP 451 n 35 ASP 451 A ASN 452 n 36 ASN 452 A ASN 453 n 37 ASN 453 A ASP 454 n 38 ASP 454 A ALA 455 n 39 ALA 455 A THR 456 n 40 THR 456 A VAL 457 n 41 VAL 457 A PHE 458 n 42 PHE 458 A CYS 459 n 43 CYS 459 A ARG 460 n 44 ARG 460 A MET 461 n 45 MET 461 A LEU 462 n 46 LEU 462 A GLY 463 n 47 GLY 463 A TYR 464 n 48 TYR 464 A SER 465 n 49 SER 465 A ARG 466 n 50 ARG 466 A GLY 467 n 51 GLY 467 A ARG 468 n 52 ARG 468 A ALA 469 n 53 ALA 469 A LEU 470 n 54 LEU 470 A SER 471 n 55 SER 471 A SER 472 n 56 SER 472 A TYR 473 n 57 TYR 473 A GLY 474 n 58 GLY 474 A GLY 475 n 59 GLY 475 A GLY 476 n 60 GLY 476 A SER 477 n 61 SER 477 A GLY 478 n 62 GLY 478 A ASN 479 n 63 ASN 479 A ILE 480 n 64 ILE 480 A TRP 481 n 65 TRP 481 A LEU 482 n 66 LEU 482 A ASP 483 n 67 ASP 483 A ASN 484 n 68 ASN 484 A VAL 485 n 69 VAL 485 A ASN 486 n 70 ASN 486 A CYS 487 n 71 CYS 487 A ARG 488 n 72 ARG 488 A GLY 489 n 73 GLY 489 A THR 490 n 74 THR 490 A GLU 491 n 75 GLU 491 A ASN 492 n 76 ASN 492 A SER 493 n 77 SER 493 A LEU 494 n 78 LEU 494 A TRP 495 n 79 TRP 495 A ASP 496 n 80 ASP 496 A CYS 497 n 81 CYS 497 A SER 498 n 82 SER 498 A LYS 499 n 83 LYS 499 A ASN 500 n 84 ASN 500 A SER 501 n 85 SER 501 A TRP 502 n 86 TRP 502 A GLY 503 n 87 GLY 503 A ASN 504 n 88 ASN 504 A HIS 505 n 89 HIS 505 A ASN 506 n 90 ASN 506 A CYS 507 n 91 CYS 507 A VAL 508 n 92 VAL 508 A HIS 509 n 93 HIS 509 A ASN 510 n 94 ASN 510 A GLU 511 n 95 GLU 511 A ASP 512 n 96 ASP 512 A ALA 513 n 97 ALA 513 A GLY 514 n 98 GLY 514 A VAL 515 n 99 VAL 515 A GLU 516 n 100 GLU 516 A CYS 517 n 101 CYS 517 A SER 518 n 102 SER 518 A ALA 417 n 1 ALA 417 B PRO 418 n 2 PRO 418 B LEU 419 n 3 LEU 419 B ALA 420 n 4 ALA 420 B GLN 421 n 5 GLN 421 B ARG 422 n 6 ARG 422 B VAL 423 n 7 VAL 423 B ARG 424 n 8 ARG 424 B ILE 425 n 9 ILE 425 B MET 426 n 10 MET 426 B GLY 427 n 11 GLY 427 B GLY 428 n 12 GLY 428 B THR 429 n 13 THR 429 B ASN 430 n 14 ASN 430 B ARG 431 n 15 ARG 431 B GLY 432 n 16 GLY 432 B ARG 433 n 17 ARG 433 B ALA 434 n 18 ALA 434 B GLU 435 n 19 GLU 435 B VAL 436 n 20 VAL 436 B TYR 437 n 21 TYR 437 B TYR 438 n 22 TYR 438 B ASN 439 n 23 ASN 439 B ASN 440 n 24 ASN 440 B GLU 441 n 25 GLU 441 B TRP 442 n 26 TRP 442 B GLY 443 n 27 GLY 443 B THR 444 n 28 THR 444 B ILE 445 n 29 ILE 445 B CYS 446 n 30 CYS 446 B ASP 447 n 31 ASP 447 B ASP 448 n 32 ASP 448 B ASP 449 n 33 ASP 449 B TRP 450 n 34 TRP 450 B ASP 451 n 35 ASP 451 B ASN 452 n 36 ASN 452 B ASN 453 n 37 ASN 453 B ASP 454 n 38 ASP 454 B ALA 455 n 39 ALA 455 B THR 456 n 40 THR 456 B VAL 457 n 41 VAL 457 B PHE 458 n 42 PHE 458 B CYS 459 n 43 CYS 459 B ARG 460 n 44 ARG 460 B MET 461 n 45 MET 461 B LEU 462 n 46 LEU 462 B GLY 463 n 47 GLY 463 B TYR 464 n 48 TYR 464 B SER 465 n 49 SER 465 B ARG 466 n 50 ARG 466 B GLY 467 n 51 GLY 467 B ARG 468 n 52 ARG 468 B ALA 469 n 53 ALA 469 B LEU 470 n 54 LEU 470 B SER 471 n 55 SER 471 B SER 472 n 56 SER 472 B TYR 473 n 57 TYR 473 B GLY 474 n 58 GLY 474 B GLY 475 n 59 GLY 475 B GLY 476 n 60 GLY 476 B SER 477 n 61 SER 477 B GLY 478 n 62 GLY 478 B ASN 479 n 63 ASN 479 B ILE 480 n 64 ILE 480 B TRP 481 n 65 TRP 481 B LEU 482 n 66 LEU 482 B ASP 483 n 67 ASP 483 B ASN 484 n 68 ASN 484 B VAL 485 n 69 VAL 485 B ASN 486 n 70 ASN 486 B CYS 487 n 71 CYS 487 B ARG 488 n 72 ARG 488 B GLY 489 n 73 GLY 489 B THR 490 n 74 THR 490 B GLU 491 n 75 GLU 491 B ASN 492 n 76 ASN 492 B SER 493 n 77 SER 493 B LEU 494 n 78 LEU 494 B TRP 495 n 79 TRP 495 B ASP 496 n 80 ASP 496 B CYS 497 n 81 CYS 497 B SER 498 n 82 SER 498 B LYS 499 n 83 LYS 499 B ASN 500 n 84 ASN 500 B SER 501 n 85 SER 501 B TRP 502 n 86 TRP 502 B GLY 503 n 87 GLY 503 B ASN 504 n 88 ASN 504 B HIS 505 n 89 HIS 505 B ASN 506 n 90 ASN 506 B CYS 507 n 91 CYS 507 B VAL 508 n 92 VAL 508 B HIS 509 n 93 HIS 509 B ASN 510 n 94 ASN 510 B GLU 511 n 95 GLU 511 B ASP 512 n 96 ASP 512 B ALA 513 n 97 ALA 513 B GLY 514 n 98 GLY 514 B VAL 515 n 99 VAL 515 B GLU 516 n 100 GLU 516 B CYS 517 n 101 CYS 517 B SER 518 n 102 SER 518 B author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric software_defined_assembly PISA,PQS 2 dimeric 3210 -42 9760 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 470 A N LEU 54 A O GLY 514 A O GLY 98 A O CYS 517 A O CYS 101 A N ASN 430 A N ASN 14 A N MET 426 A N MET 10 B O ARG 433 B O ARG 17 B N ASN 430 B N ASN 14 B O CYS 517 B O CYS 101 B O GLY 514 B O GLY 98 B N LEU 470 B N LEU 54 A O TRP 481 A O TRP 65 A N THR 444 A N THR 28 A O GLY 443 A O GLY 27 A N VAL 436 A N VAL 20 A N MET 426 A N MET 10 B O ARG 433 B O ARG 17 B N VAL 436 B N VAL 20 B O GLY 443 B O GLY 27 B N THR 444 B N THR 28 B O TRP 481 B O TRP 65 11.590 -0.010 -0.180 -0.040 0.080 -0.060 -0.160 0.959 0.940 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.191 0.15 0.154 1.770 14.912 1644 17081 16364 10.000 95.810 2.108 0.069 RANDOM 1 isotropic THROUGHOUT 0.00 MOLECULAR REPLACEMENT 0.140 0.126 0.800 0.800 1.400 PDB ENTRY 2OY3 MAXIMUM LIKELIHOOD MASK 1.770 14.912 192 1791 15 0 1584 0.010 0.021 1695 1.248 1.895 2316 6.313 5.000 216 35.828 24.343 99 10.453 15.000 245 14.790 15.000 16 0.092 0.200 221 0.005 0.020 1398 0.188 0.200 808 0.296 0.200 1158 0.125 0.200 144 0.188 0.200 62 0.143 0.200 33 0.761 1.500 1060 1.203 2.000 1649 2.137 3.000 753 3.098 4.500 667 0.255 0.184 1.815 110 1072 1182 20 90.230 1.77 14.912 2OYA 17081 16364 0.013 00 0.037 0.037 1 13.800 3.500 95.400 0.074 1.77 1.86 9.1 7835 2282 0.074 1 3.40 89.40 data scaling Phil Evans pre@mrc-lmb.cam.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/INDEX.html SCALA other phasing A. Vagin alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP other refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program data extraction PDB sw-help@rcsb.rutgers.edu April. 3, 2006 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 2.000 data reduction MOSFLM data scaling CCP4 (SCALA) Crystal structure analysis of the dimeric form of the SRCR domain of mouse MARCO 1 N N 1 N N 2 N N 2 N N 2 N N 3 N N 3 N N Biological unit is a monomer. There are two biological units in the asymmetric unit (chains A & B) A PRO 418 A PRO 2 HELX_P A GLN 421 A GLN 5 5 1 4 A ASP 451 A ASP 35 HELX_P A LEU 462 A LEU 46 1 2 12 A SER 493 A SER 77 HELX_P A CYS 497 A CYS 81 5 3 5 A VAL 508 A VAL 92 HELX_P A ASP 512 A ASP 96 5 4 5 B PRO 418 B PRO 2 HELX_P B GLN 421 B GLN 5 5 5 4 B ASP 451 B ASP 35 HELX_P B LEU 462 B LEU 46 1 6 12 B SER 493 B SER 77 HELX_P B CYS 497 B CYS 81 5 7 5 B VAL 508 B VAL 92 HELX_P B ASP 512 B ASP 96 5 8 5 disulf 2.047 A CYS 446 A SG CYS 30 1_555 A CYS 507 A SG CYS 91 1_555 disulf 2.020 A CYS 459 A SG CYS 43 1_555 A CYS 517 A SG CYS 101 1_555 disulf 2.041 A CYS 487 A SG CYS 71 1_555 A CYS 497 A SG CYS 81 1_555 disulf 2.038 B CYS 446 B SG CYS 30 1_555 B CYS 507 B SG CYS 91 1_555 disulf 2.040 B CYS 459 B SG CYS 43 1_555 B CYS 517 B SG CYS 101 1_555 disulf 2.044 B CYS 487 B SG CYS 71 1_555 B CYS 497 B SG CYS 81 1_555 LIGAND BINDING PROTEIN Extracellular matrix, Scavenger receptor cysteine-rich (SRCR), macrophage receptor, ligand binding, basic cluster, acidic cluster, sulfate binding, dimer, LIGAND BINDING PROTEIN MARCO_MOUSE UNP 1 421 Q60754 QRVRIMGGTNRGRAEVYYNNEWGTICDDDWDNNDATVFCRMLGYSRGRALSSYGGGSGNIWLDNVNCRGTENSLWDCSKN SWGNHNCVHNEDAGVECS 421 518 2OYA 421 518 Q60754 A 1 5 102 421 518 2OYA 421 518 Q60754 B 1 5 102 1 cloning artifact ALA 417 2OYA A Q60754 UNP 1 1 cloning artifact PRO 418 2OYA A Q60754 UNP 2 1 cloning artifact LEU 419 2OYA A Q60754 UNP 3 1 cloning artifact ALA 420 2OYA A Q60754 UNP 4 2 cloning artifact ALA 417 2OYA B Q60754 UNP 1 2 cloning artifact PRO 418 2OYA B Q60754 UNP 2 2 cloning artifact LEU 419 2OYA B Q60754 UNP 3 2 cloning artifact ALA 420 2OYA B Q60754 UNP 4 6 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel A ARG 466 A ARG 50 A LEU 470 A LEU 54 A GLY 514 A GLY 98 A SER 518 A SER 102 A VAL 423 A VAL 7 A TYR 438 A TYR 22 B VAL 423 B VAL 7 B TYR 438 B TYR 22 B GLY 514 B GLY 98 B SER 518 B SER 102 B ARG 466 B ARG 50 B LEU 470 B LEU 54 A ILE 480 A ILE 64 A LEU 482 A LEU 66 A GLU 441 A GLU 25 A ILE 445 A ILE 29 A VAL 423 A VAL 7 A TYR 438 A TYR 22 B VAL 423 B VAL 7 B TYR 438 B TYR 22 B GLU 441 B GLU 25 B ILE 445 B ILE 29 B ILE 480 B ILE 64 B LEU 482 B LEU 66 BINDING SITE FOR RESIDUE SO4 A 201 A SO4 201 Software 7 BINDING SITE FOR RESIDUE SO4 A 202 A SO4 202 Software 5 BINDING SITE FOR RESIDUE SO4 B 203 B SO4 203 Software 4 A HOH 85 F HOH 7 1_555 A HOH 175 F HOH 7 1_555 A HOH 178 F HOH 7 1_555 A SER 501 A SER 85 7 1_555 A TRP 502 A TRP 86 7 1_555 B HOH 166 G HOH 7 1_556 B ARG 488 B ARG 72 7 1_456 A HOH 22 F HOH 5 1_555 A HOH 40 F HOH 5 1_555 A HOH 179 F HOH 5 1_555 A VAL 508 A VAL 92 5 1_555 A HIS 509 A HIS 93 5 1_555 A HOH 191 F HOH 4 1_655 A ARG 431 A ARG 15 4 1_655 A ARG 468 A ARG 52 4 1_655 B ARG 460 B ARG 44 4 1_555 1 P 1