0.020605 0.000000 0.000000 0.000000 0.020605 0.000000 0.000000 0.000000 0.007610 0.00000 0.00000 0.00000 Blanchard, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 48.531 48.531 131.403 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C12 H21 N O9 323.296 n 2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid 2-O-METHYL-5-N-ACETYL-ALPHA-D- NEURAMINIC ACID D-saccharide C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N C N 251 R C N 252 N C N 253 S C N 254 R C N 255 R C N 256 R C N 257 R C N 258 N C N 259 N C N 260 N C N 261 N C N 262 N N N 263 N O N 264 N O N 265 N O N 266 N O N 267 N O N 268 N O N 269 N O N 270 N O N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 S C N 295 N C N 296 N O N 297 N C Y 298 N C Y 299 N C Y 300 N C Y 301 N C Y 302 N C Y 303 N C N 304 N O N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N N N 317 S C N 318 N C N 319 N O N 320 N C N 321 N C N 322 N C N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N N N 334 S C N 335 N C N 336 N O N 337 N C N 338 N O N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N S N 348 N O N 349 N O N 350 N O N 351 N O N 352 N N N 353 S C N 354 N C N 355 N O N 356 R C N 357 N O N 358 N C N 359 N O N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C Y 374 N C Y 375 N C Y 376 N C Y 377 N N Y 378 N C Y 379 N C Y 380 N C Y 381 N C Y 382 N C N 383 N O N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N N N 397 S C N 398 N C N 399 N O N 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C N 407 N O N 408 N O N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N N N 421 S C N 422 N C N 423 N O N 424 N C N 425 N C N 426 N C N 427 N O N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N doub N 287 N sing N 288 N sing N 289 N sing N 290 N sing Y 291 N doub Y 292 N sing Y 293 N sing N 294 N sing Y 295 N doub N 296 N sing Y 297 N doub N 298 N sing Y 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N doub N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N doub N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N doub N 360 N sing N 361 N sing N 362 N sing N 363 N sing Y 364 N doub Y 365 N sing Y 366 N sing N 367 N sing Y 368 N doub Y 369 N sing Y 370 N sing N 371 N sing Y 372 N sing Y 373 N doub N 374 N sing Y 375 N doub N 376 N sing Y 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 N sing N 391 N sing Y 392 N doub Y 393 N sing Y 394 N sing N 395 N sing Y 396 N doub N 397 N sing Y 398 N doub N 399 N sing Y 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N doub N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing UK Glycobiology 9999 0959-6658 19 194 200 10.1093/glycob/cwn119 18974199 Effects on sialic acid recognition of amino acid mutations in the carbohydrate-binding cleft of the rotavirus spike protein 2009 10.2210/pdb2p3j/pdb pdb_00002p3j 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 295 1 mirrors CCD 2004-12-21 BRUKER SMART 6000 mirrors SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE MACSCIENCE 18069.947 VP4 VP8* domain (fragment 64-224) R101A 1 man polymer 96.063 SULFATE ION 1 syn non-polymer 323.296 2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid 1 syn non-polymer 18.015 water 134 nat water rotavirus spike protein no no VLDGPYQPTTFNPPVDYWMLLAPTAAGVVVEGTNNTDAWLATILVEPNVTSETRSYTLFGTQEQITIANASQTQWKFIDV VKTTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCDFYIIPREEESTCTEYINNG L VLDGPYQPTTFNPPVDYWMLLAPTAAGVVVEGTNNTDAWLATILVEPNVTSETRSYTLFGTQEQITIANASQTQWKFIDV VKTTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCDFYIIPREEESTCTEYINNG L A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Rotavirus Rotavirus A Rhesus Escherichia Escherichia coli sample 10969 Rhesus rotavirus 469008 Escherichia coli BL21 DE3 Plasmid pGEX-VP8 (64-224) 1 2.14 42.52 VAPOR DIFFUSION, HANGING DROP 6.5 1.7M (NH4)2SO4, 2.4% v/v PEG 400, 0.1M PIPES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 303K 303 software reflns_shell struct_ref_seq_dif chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Version format compliance Refinement description Data collection Database references Data collection Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2008-03-11 1 1 2011-07-13 1 2 2017-10-18 1 3 2019-10-23 1 4 2020-07-29 1 5 2023-10-25 _software.name _reflns_shell.Rmerge_I_obs _struct_ref_seq_dif.details _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession 2-O-methyl-5-N-acetyl-a-D-neuraminic acid Native protein at 295K RCSB Y PDBJ 2007-03-09 REL REL SO4 SULFATE ION MNA 2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid HOH water 1KQR RRV VP8* PDB code 1KQR PDB experimental model SO4 3000 2 SO4 SO4 3000 A MNA 1000 3 MNA MNA 1000 A HOH 1 4 HOH HOH 3001 A HOH 2 4 HOH HOH 3002 A HOH 3 4 HOH HOH 3003 A HOH 4 4 HOH HOH 3004 A HOH 5 4 HOH HOH 3005 A HOH 6 4 HOH HOH 3006 A HOH 7 4 HOH HOH 3007 A HOH 8 4 HOH HOH 3008 A HOH 9 4 HOH HOH 3009 A HOH 10 4 HOH HOH 3010 A HOH 11 4 HOH HOH 3011 A HOH 12 4 HOH HOH 3012 A HOH 13 4 HOH HOH 3013 A HOH 14 4 HOH HOH 3014 A HOH 15 4 HOH HOH 3015 A HOH 16 4 HOH HOH 3016 A HOH 17 4 HOH HOH 3017 A HOH 18 4 HOH HOH 3018 A HOH 19 4 HOH HOH 3019 A HOH 20 4 HOH HOH 3020 A HOH 21 4 HOH HOH 3021 A HOH 22 4 HOH HOH 3022 A HOH 23 4 HOH HOH 3023 A HOH 24 4 HOH HOH 3024 A HOH 25 4 HOH HOH 3025 A HOH 26 4 HOH HOH 3026 A HOH 27 4 HOH HOH 3027 A HOH 28 4 HOH HOH 3028 A HOH 29 4 HOH HOH 3029 A HOH 30 4 HOH HOH 3030 A HOH 31 4 HOH HOH 3031 A HOH 32 4 HOH HOH 3032 A HOH 33 4 HOH HOH 3033 A HOH 34 4 HOH HOH 3034 A HOH 35 4 HOH HOH 3035 A HOH 36 4 HOH HOH 3036 A HOH 37 4 HOH HOH 3037 A HOH 38 4 HOH HOH 3038 A HOH 39 4 HOH HOH 3039 A HOH 40 4 HOH HOH 3040 A HOH 41 4 HOH HOH 3041 A HOH 42 4 HOH HOH 3042 A HOH 43 4 HOH HOH 3043 A HOH 44 4 HOH HOH 3044 A HOH 45 4 HOH HOH 3045 A HOH 46 4 HOH HOH 3046 A HOH 47 4 HOH HOH 3047 A HOH 48 4 HOH HOH 3048 A HOH 49 4 HOH HOH 3049 A HOH 50 4 HOH HOH 3050 A HOH 51 4 HOH HOH 3051 A HOH 52 4 HOH HOH 3052 A HOH 53 4 HOH HOH 3053 A HOH 54 4 HOH HOH 3054 A HOH 55 4 HOH HOH 3055 A HOH 56 4 HOH HOH 3056 A HOH 57 4 HOH HOH 3057 A HOH 58 4 HOH HOH 3058 A HOH 59 4 HOH HOH 3059 A HOH 60 4 HOH HOH 3060 A HOH 61 4 HOH HOH 3061 A HOH 62 4 HOH HOH 3062 A HOH 63 4 HOH HOH 3063 A HOH 64 4 HOH HOH 3064 A HOH 65 4 HOH HOH 3065 A HOH 66 4 HOH HOH 3066 A HOH 67 4 HOH HOH 3067 A HOH 68 4 HOH HOH 3068 A HOH 69 4 HOH HOH 3069 A HOH 70 4 HOH HOH 3070 A HOH 71 4 HOH HOH 3071 A HOH 72 4 HOH HOH 3072 A HOH 73 4 HOH HOH 3073 A HOH 74 4 HOH HOH 3074 A HOH 75 4 HOH HOH 3075 A HOH 76 4 HOH HOH 3076 A HOH 77 4 HOH HOH 3077 A HOH 78 4 HOH HOH 3078 A HOH 79 4 HOH HOH 3079 A HOH 80 4 HOH HOH 3080 A HOH 81 4 HOH HOH 3081 A HOH 82 4 HOH HOH 3082 A HOH 83 4 HOH HOH 3083 A HOH 84 4 HOH HOH 3084 A HOH 85 4 HOH HOH 3085 A HOH 86 4 HOH HOH 3086 A HOH 87 4 HOH HOH 3087 A HOH 88 4 HOH HOH 3088 A HOH 89 4 HOH HOH 3089 A HOH 90 4 HOH HOH 3090 A HOH 91 4 HOH HOH 3091 A HOH 92 4 HOH HOH 3092 A HOH 93 4 HOH HOH 3093 A HOH 94 4 HOH HOH 3094 A HOH 95 4 HOH HOH 3095 A HOH 96 4 HOH HOH 3096 A HOH 97 4 HOH HOH 3097 A HOH 98 4 HOH HOH 3098 A HOH 99 4 HOH HOH 3099 A HOH 100 4 HOH HOH 3100 A HOH 101 4 HOH HOH 3101 A HOH 102 4 HOH HOH 3102 A HOH 103 4 HOH HOH 3103 A HOH 104 4 HOH HOH 3104 A HOH 105 4 HOH HOH 3105 A HOH 106 4 HOH HOH 3106 A HOH 107 4 HOH HOH 3107 A HOH 108 4 HOH HOH 3108 A HOH 109 4 HOH HOH 3109 A HOH 110 4 HOH HOH 3110 A HOH 111 4 HOH HOH 3111 A HOH 112 4 HOH HOH 3112 A HOH 113 4 HOH HOH 3113 A HOH 114 4 HOH HOH 3114 A HOH 115 4 HOH HOH 3115 A HOH 116 4 HOH HOH 3116 A HOH 117 4 HOH HOH 3117 A HOH 118 4 HOH HOH 3118 A HOH 119 4 HOH HOH 3119 A HOH 120 4 HOH HOH 3120 A HOH 121 4 HOH HOH 3121 A HOH 122 4 HOH HOH 3122 A HOH 123 4 HOH HOH 3123 A HOH 124 4 HOH HOH 3124 A HOH 125 4 HOH HOH 3125 A HOH 126 4 HOH HOH 3126 A HOH 127 4 HOH HOH 3127 A HOH 128 4 HOH HOH 3128 A HOH 129 4 HOH HOH 3129 A HOH 130 4 HOH HOH 3130 A HOH 131 4 HOH HOH 3131 A HOH 132 4 HOH HOH 3132 A HOH 133 4 HOH HOH 3133 A HOH 134 4 HOH HOH 3134 A VAL 64 n 1 VAL 64 A LEU 65 n 2 LEU 65 A ASP 66 n 3 ASP 66 A GLY 67 n 4 GLY 67 A PRO 68 n 5 PRO 68 A TYR 69 n 6 TYR 69 A GLN 70 n 7 GLN 70 A PRO 71 n 8 PRO 71 A THR 72 n 9 THR 72 A THR 73 n 10 THR 73 A PHE 74 n 11 PHE 74 A ASN 75 n 12 ASN 75 A PRO 76 n 13 PRO 76 A PRO 77 n 14 PRO 77 A VAL 78 n 15 VAL 78 A ASP 79 n 16 ASP 79 A TYR 80 n 17 TYR 80 A TRP 81 n 18 TRP 81 A MET 82 n 19 MET 82 A LEU 83 n 20 LEU 83 A LEU 84 n 21 LEU 84 A ALA 85 n 22 ALA 85 A PRO 86 n 23 PRO 86 A THR 87 n 24 THR 87 A ALA 88 n 25 ALA 88 A ALA 89 n 26 ALA 89 A GLY 90 n 27 GLY 90 A VAL 91 n 28 VAL 91 A VAL 92 n 29 VAL 92 A VAL 93 n 30 VAL 93 A GLU 94 n 31 GLU 94 A GLY 95 n 32 GLY 95 A THR 96 n 33 THR 96 A ASN 97 n 34 ASN 97 A ASN 98 n 35 ASN 98 A THR 99 n 36 THR 99 A ASP 100 n 37 ASP 100 A ALA 101 n 38 ALA 101 A TRP 102 n 39 TRP 102 A LEU 103 n 40 LEU 103 A ALA 104 n 41 ALA 104 A THR 105 n 42 THR 105 A ILE 106 n 43 ILE 106 A LEU 107 n 44 LEU 107 A VAL 108 n 45 VAL 108 A GLU 109 n 46 GLU 109 A PRO 110 n 47 PRO 110 A ASN 111 n 48 ASN 111 A VAL 112 n 49 VAL 112 A THR 113 n 50 THR 113 A SER 114 n 51 SER 114 A GLU 115 n 52 GLU 115 A THR 116 n 53 THR 116 A ARG 117 n 54 ARG 117 A SER 118 n 55 SER 118 A TYR 119 n 56 TYR 119 A THR 120 n 57 THR 120 A LEU 121 n 58 LEU 121 A PHE 122 n 59 PHE 122 A GLY 123 n 60 GLY 123 A THR 124 n 61 THR 124 A GLN 125 n 62 GLN 125 A GLU 126 n 63 GLU 126 A GLN 127 n 64 GLN 127 A ILE 128 n 65 ILE 128 A THR 129 n 66 THR 129 A ILE 130 n 67 ILE 130 A ALA 131 n 68 ALA 131 A ASN 132 n 69 ASN 132 A ALA 133 n 70 ALA 133 A SER 134 n 71 SER 134 A GLN 135 n 72 GLN 135 A THR 136 n 73 THR 136 A GLN 137 n 74 GLN 137 A TRP 138 n 75 TRP 138 A LYS 139 n 76 LYS 139 A PHE 140 n 77 PHE 140 A ILE 141 n 78 ILE 141 A ASP 142 n 79 ASP 142 A VAL 143 n 80 VAL 143 A VAL 144 n 81 VAL 144 A LYS 145 n 82 LYS 145 A THR 146 n 83 THR 146 A THR 147 n 84 THR 147 A GLN 148 n 85 GLN 148 A ASN 149 n 86 ASN 149 A GLY 150 n 87 GLY 150 A SER 151 n 88 SER 151 A TYR 152 n 89 TYR 152 A SER 153 n 90 SER 153 A GLN 154 n 91 GLN 154 A TYR 155 n 92 TYR 155 A GLY 156 n 93 GLY 156 A PRO 157 n 94 PRO 157 A LEU 158 n 95 LEU 158 A GLN 159 n 96 GLN 159 A SER 160 n 97 SER 160 A THR 161 n 98 THR 161 A PRO 162 n 99 PRO 162 A LYS 163 n 100 LYS 163 A LEU 164 n 101 LEU 164 A TYR 165 n 102 TYR 165 A ALA 166 n 103 ALA 166 A VAL 167 n 104 VAL 167 A MET 168 n 105 MET 168 A LYS 169 n 106 LYS 169 A HIS 170 n 107 HIS 170 A ASN 171 n 108 ASN 171 A GLY 172 n 109 GLY 172 A LYS 173 n 110 LYS 173 A ILE 174 n 111 ILE 174 A TYR 175 n 112 TYR 175 A THR 176 n 113 THR 176 A TYR 177 n 114 TYR 177 A ASN 178 n 115 ASN 178 A GLY 179 n 116 GLY 179 A GLU 180 n 117 GLU 180 A THR 181 n 118 THR 181 A PRO 182 n 119 PRO 182 A ASN 183 n 120 ASN 183 A VAL 184 n 121 VAL 184 A THR 185 n 122 THR 185 A THR 186 n 123 THR 186 A LYS 187 n 124 LYS 187 A TYR 188 n 125 TYR 188 A TYR 189 n 126 TYR 189 A SER 190 n 127 SER 190 A THR 191 n 128 THR 191 A THR 192 n 129 THR 192 A ASN 193 n 130 ASN 193 A TYR 194 n 131 TYR 194 A ASP 195 n 132 ASP 195 A SER 196 n 133 SER 196 A VAL 197 n 134 VAL 197 A ASN 198 n 135 ASN 198 A MET 199 n 136 MET 199 A THR 200 n 137 THR 200 A ALA 201 n 138 ALA 201 A PHE 202 n 139 PHE 202 A CYS 203 n 140 CYS 203 A ASP 204 n 141 ASP 204 A PHE 205 n 142 PHE 205 A TYR 206 n 143 TYR 206 A ILE 207 n 144 ILE 207 A ILE 208 n 145 ILE 208 A PRO 209 n 146 PRO 209 A ARG 210 n 147 ARG 210 A GLU 211 n 148 GLU 211 A GLU 212 n 149 GLU 212 A GLU 213 n 150 GLU 213 A SER 214 n 151 SER 214 A THR 215 n 152 THR 215 A CYS 216 n 153 CYS 216 A THR 217 n 154 THR 217 A GLU 218 n 155 GLU 218 A TYR 219 n 156 TYR 219 A ILE 220 n 157 ILE 220 A ASN 221 n 158 ASN 221 A ASN 222 n 159 ASN 222 A GLY 223 n 160 GLY 223 A LEU 224 n 161 LEU 224 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 69 A N TYR 6 A O PHE 205 A O PHE 142 A O ILE 208 A O ILE 145 A N TRP 81 A N TRP 18 A N MET 82 A N MET 19 A O VAL 167 A O VAL 104 A N MET 168 A N MET 105 A O TYR 175 A O TYR 112 A O GLY 179 A O GLY 116 A N GLN 159 A N GLN 96 A O LEU 158 A O LEU 95 A N PHE 140 A N PHE 77 A O VAL 143 A O VAL 80 A N ALA 104 A N ALA 41 A O THR 105 A O THR 42 A N VAL 92 A N VAL 29 A N GLU 94 A N GLU 31 A O THR 200 A O THR 137 A O MET 199 A O MET 136 A N PHE 74 A N PHE 11 A N TYR 69 A N TYR 6 A O PHE 205 A O PHE 142 A O ILE 208 A O ILE 145 A N TRP 81 A N TRP 18 A N MET 82 A N MET 19 A O VAL 167 A O VAL 104 A N MET 168 A N MET 105 A O TYR 175 A O TYR 112 A N ILE 174 A N ILE 111 A O TYR 189 A O TYR 126 A N TYR 119 A N TYR 56 A O GLU 126 A O GLU 63 1 A HOH 3079 D HOH 1 A THR 99 -127.64 -55.27 1 A ASP 100 -140.54 14.08 1 A ASN 111 66.71 68.22 1 A SER 114 -32.63 119.30 1 A PRO 182 -97.83 38.77 18.025 -0.03 0.00 0.00 -0.03 0.00 0.06 0.961 0.943 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.20586 0.16075 0.1629 1.90 45.64 587 11421 4.9 91.67 2.871 0.086 RANDOM 1 THROUGHOUT FOURIER SYNTHESIS 0.163 0.146 0.80 0.80 1.20 RRV VP8* PDB code 1KQR MAXIMUM LIKELIHOOD MASK 1.90 45.64 134 1435 27 0 1274 0.009 0.022 1357 1.217 1.958 1870 6.142 5.000 160 32.627 25.873 63 12.073 15.000 203 2.857 15.000 2 0.085 0.200 220 0.004 0.020 1033 0.200 0.200 543 0.308 0.200 959 0.133 0.200 113 0.146 0.200 39 0.121 0.200 14 0.693 1.500 832 1.115 2.000 1348 1.786 3.000 611 2.648 4.500 522 0.241 0.174 1.949 22 451 20 50.48 1.9 65 2P3J 12064 0 0 0.048 1 11.8 12.7 91.7 0.107 1.9 2.04 4.7 1521 63 refinement REFMAC 5.2.0005 data collection PROTEUM PLUS PLUS data reduction SAINT data scaling LSCALE phasing AMoRE Crystal structure of the Arg101Ala mutant protein of Rhesus rotavirus VP8* 1 N N 2 N N 3 N N 4 N N A ASN 193 A ASN 130 HELX_P A VAL 197 A VAL 134 5 1 5 A GLU 212 A GLU 149 HELX_P A GLY 223 A GLY 160 1 2 12 VIRAL PROTEIN beta-sandwich, VIRAL PROTEIN A GLY 67 A GLY 4 1 A PRO 68 A PRO 5 1.72 A THR 181 A THR 118 1 A PRO 182 A PRO 119 5.60 Q91HI9_ROTRH UNP 1 64 Q91HI9 VLDGPYQPTTFNPPVDYWMLLAPTAAGVVVEGTNNTDRWLATILVEPNVTSETRSYTLFGTQEQITIANASQTQWKFIDV VKTTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCDFYIIPREEESTCTEYINNG L 64 224 2P3J 64 224 Q91HI9 A 1 1 161 1 ARG engineered mutation ALA 101 2P3J A Q91HI9 UNP 101 38 11 6 2 anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ASP 66 A ASP 3 A TYR 69 A TYR 6 A PHE 205 A PHE 142 A PRO 209 A PRO 146 A TYR 80 A TYR 17 A LEU 84 A LEU 21 A TYR 165 A TYR 102 A HIS 170 A HIS 107 A LYS 173 A LYS 110 A GLU 180 A GLU 117 A SER 153 A SER 90 A SER 160 A SER 97 A TRP 138 A TRP 75 A LYS 145 A LYS 82 A TRP 102 A TRP 39 A VAL 108 A VAL 45 A GLY 90 A GLY 27 A THR 96 A THR 33 A ASN 198 A ASN 135 A ALA 201 A ALA 138 A THR 73 A THR 10 A PHE 74 A PHE 11 A ASP 66 A ASP 3 A TYR 69 A TYR 6 A PHE 205 A PHE 142 A PRO 209 A PRO 146 A TYR 80 A TYR 17 A LEU 84 A LEU 21 A TYR 165 A TYR 102 A HIS 170 A HIS 107 A LYS 173 A LYS 110 A GLU 180 A GLU 117 A THR 185 A THR 122 A SER 190 A SER 127 A VAL 112 A VAL 49 A LEU 121 A LEU 58 A THR 124 A THR 61 A ASN 132 A ASN 69 92 P 41 21 2