0.020605
0.000000
0.000000
0.000000
0.020605
0.000000
0.000000
0.000000
0.007610
0.00000
0.00000
0.00000
Blanchard, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
48.531
48.531
131.403
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C12 H21 N O9
323.296
n
2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid
2-O-METHYL-5-N-ACETYL-ALPHA-D- NEURAMINIC ACID
D-saccharide
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
C
N
251
R
C
N
252
N
C
N
253
S
C
N
254
R
C
N
255
R
C
N
256
R
C
N
257
R
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
N
N
263
N
O
N
264
N
O
N
265
N
O
N
266
N
O
N
267
N
O
N
268
N
O
N
269
N
O
N
270
N
O
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
O
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
S
N
348
N
O
N
349
N
O
N
350
N
O
N
351
N
O
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
R
C
N
357
N
O
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
N
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
N
407
N
O
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
Y
291
N
doub
Y
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
doub
N
296
N
sing
Y
297
N
doub
N
298
N
sing
Y
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
Y
364
N
doub
Y
365
N
sing
Y
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
sing
Y
373
N
doub
N
374
N
sing
Y
375
N
doub
N
376
N
sing
Y
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
Y
392
N
doub
Y
393
N
sing
Y
394
N
sing
N
395
N
sing
Y
396
N
doub
N
397
N
sing
Y
398
N
doub
N
399
N
sing
Y
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
UK
Glycobiology
9999
0959-6658
19
194
200
10.1093/glycob/cwn119
18974199
Effects on sialic acid recognition of amino acid mutations in the carbohydrate-binding cleft of the rotavirus spike protein
2009
10.2210/pdb2p3j/pdb
pdb_00002p3j
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
295
1
mirrors
CCD
2004-12-21
BRUKER SMART 6000
mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
MACSCIENCE
18069.947
VP4
VP8* domain (fragment 64-224)
R101A
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
323.296
2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid
1
syn
non-polymer
18.015
water
134
nat
water
rotavirus spike protein
no
no
VLDGPYQPTTFNPPVDYWMLLAPTAAGVVVEGTNNTDAWLATILVEPNVTSETRSYTLFGTQEQITIANASQTQWKFIDV
VKTTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCDFYIIPREEESTCTEYINNG
L
VLDGPYQPTTFNPPVDYWMLLAPTAAGVVVEGTNNTDAWLATILVEPNVTSETRSYTLFGTQEQITIANASQTQWKFIDV
VKTTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCDFYIIPREEESTCTEYINNG
L
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Rotavirus
Rotavirus A
Rhesus
Escherichia
Escherichia coli
sample
10969
Rhesus rotavirus
469008
Escherichia coli
BL21 DE3
Plasmid
pGEX-VP8 (64-224)
1
2.14
42.52
VAPOR DIFFUSION, HANGING DROP
6.5
1.7M (NH4)2SO4, 2.4% v/v PEG 400, 0.1M PIPES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 303K
303
software
reflns_shell
struct_ref_seq_dif
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Refinement description
Data collection
Database references
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2008-03-11
1
1
2011-07-13
1
2
2017-10-18
1
3
2019-10-23
1
4
2020-07-29
1
5
2023-10-25
_software.name
_reflns_shell.Rmerge_I_obs
_struct_ref_seq_dif.details
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
2-O-methyl-5-N-acetyl-a-D-neuraminic acid
Native protein at 295K
RCSB
Y
PDBJ
2007-03-09
REL
REL
SO4
SULFATE ION
MNA
2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid
HOH
water
1KQR
RRV VP8* PDB code 1KQR
PDB
experimental model
SO4
3000
2
SO4
SO4
3000
A
MNA
1000
3
MNA
MNA
1000
A
HOH
1
4
HOH
HOH
3001
A
HOH
2
4
HOH
HOH
3002
A
HOH
3
4
HOH
HOH
3003
A
HOH
4
4
HOH
HOH
3004
A
HOH
5
4
HOH
HOH
3005
A
HOH
6
4
HOH
HOH
3006
A
HOH
7
4
HOH
HOH
3007
A
HOH
8
4
HOH
HOH
3008
A
HOH
9
4
HOH
HOH
3009
A
HOH
10
4
HOH
HOH
3010
A
HOH
11
4
HOH
HOH
3011
A
HOH
12
4
HOH
HOH
3012
A
HOH
13
4
HOH
HOH
3013
A
HOH
14
4
HOH
HOH
3014
A
HOH
15
4
HOH
HOH
3015
A
HOH
16
4
HOH
HOH
3016
A
HOH
17
4
HOH
HOH
3017
A
HOH
18
4
HOH
HOH
3018
A
HOH
19
4
HOH
HOH
3019
A
HOH
20
4
HOH
HOH
3020
A
HOH
21
4
HOH
HOH
3021
A
HOH
22
4
HOH
HOH
3022
A
HOH
23
4
HOH
HOH
3023
A
HOH
24
4
HOH
HOH
3024
A
HOH
25
4
HOH
HOH
3025
A
HOH
26
4
HOH
HOH
3026
A
HOH
27
4
HOH
HOH
3027
A
HOH
28
4
HOH
HOH
3028
A
HOH
29
4
HOH
HOH
3029
A
HOH
30
4
HOH
HOH
3030
A
HOH
31
4
HOH
HOH
3031
A
HOH
32
4
HOH
HOH
3032
A
HOH
33
4
HOH
HOH
3033
A
HOH
34
4
HOH
HOH
3034
A
HOH
35
4
HOH
HOH
3035
A
HOH
36
4
HOH
HOH
3036
A
HOH
37
4
HOH
HOH
3037
A
HOH
38
4
HOH
HOH
3038
A
HOH
39
4
HOH
HOH
3039
A
HOH
40
4
HOH
HOH
3040
A
HOH
41
4
HOH
HOH
3041
A
HOH
42
4
HOH
HOH
3042
A
HOH
43
4
HOH
HOH
3043
A
HOH
44
4
HOH
HOH
3044
A
HOH
45
4
HOH
HOH
3045
A
HOH
46
4
HOH
HOH
3046
A
HOH
47
4
HOH
HOH
3047
A
HOH
48
4
HOH
HOH
3048
A
HOH
49
4
HOH
HOH
3049
A
HOH
50
4
HOH
HOH
3050
A
HOH
51
4
HOH
HOH
3051
A
HOH
52
4
HOH
HOH
3052
A
HOH
53
4
HOH
HOH
3053
A
HOH
54
4
HOH
HOH
3054
A
HOH
55
4
HOH
HOH
3055
A
HOH
56
4
HOH
HOH
3056
A
HOH
57
4
HOH
HOH
3057
A
HOH
58
4
HOH
HOH
3058
A
HOH
59
4
HOH
HOH
3059
A
HOH
60
4
HOH
HOH
3060
A
HOH
61
4
HOH
HOH
3061
A
HOH
62
4
HOH
HOH
3062
A
HOH
63
4
HOH
HOH
3063
A
HOH
64
4
HOH
HOH
3064
A
HOH
65
4
HOH
HOH
3065
A
HOH
66
4
HOH
HOH
3066
A
HOH
67
4
HOH
HOH
3067
A
HOH
68
4
HOH
HOH
3068
A
HOH
69
4
HOH
HOH
3069
A
HOH
70
4
HOH
HOH
3070
A
HOH
71
4
HOH
HOH
3071
A
HOH
72
4
HOH
HOH
3072
A
HOH
73
4
HOH
HOH
3073
A
HOH
74
4
HOH
HOH
3074
A
HOH
75
4
HOH
HOH
3075
A
HOH
76
4
HOH
HOH
3076
A
HOH
77
4
HOH
HOH
3077
A
HOH
78
4
HOH
HOH
3078
A
HOH
79
4
HOH
HOH
3079
A
HOH
80
4
HOH
HOH
3080
A
HOH
81
4
HOH
HOH
3081
A
HOH
82
4
HOH
HOH
3082
A
HOH
83
4
HOH
HOH
3083
A
HOH
84
4
HOH
HOH
3084
A
HOH
85
4
HOH
HOH
3085
A
HOH
86
4
HOH
HOH
3086
A
HOH
87
4
HOH
HOH
3087
A
HOH
88
4
HOH
HOH
3088
A
HOH
89
4
HOH
HOH
3089
A
HOH
90
4
HOH
HOH
3090
A
HOH
91
4
HOH
HOH
3091
A
HOH
92
4
HOH
HOH
3092
A
HOH
93
4
HOH
HOH
3093
A
HOH
94
4
HOH
HOH
3094
A
HOH
95
4
HOH
HOH
3095
A
HOH
96
4
HOH
HOH
3096
A
HOH
97
4
HOH
HOH
3097
A
HOH
98
4
HOH
HOH
3098
A
HOH
99
4
HOH
HOH
3099
A
HOH
100
4
HOH
HOH
3100
A
HOH
101
4
HOH
HOH
3101
A
HOH
102
4
HOH
HOH
3102
A
HOH
103
4
HOH
HOH
3103
A
HOH
104
4
HOH
HOH
3104
A
HOH
105
4
HOH
HOH
3105
A
HOH
106
4
HOH
HOH
3106
A
HOH
107
4
HOH
HOH
3107
A
HOH
108
4
HOH
HOH
3108
A
HOH
109
4
HOH
HOH
3109
A
HOH
110
4
HOH
HOH
3110
A
HOH
111
4
HOH
HOH
3111
A
HOH
112
4
HOH
HOH
3112
A
HOH
113
4
HOH
HOH
3113
A
HOH
114
4
HOH
HOH
3114
A
HOH
115
4
HOH
HOH
3115
A
HOH
116
4
HOH
HOH
3116
A
HOH
117
4
HOH
HOH
3117
A
HOH
118
4
HOH
HOH
3118
A
HOH
119
4
HOH
HOH
3119
A
HOH
120
4
HOH
HOH
3120
A
HOH
121
4
HOH
HOH
3121
A
HOH
122
4
HOH
HOH
3122
A
HOH
123
4
HOH
HOH
3123
A
HOH
124
4
HOH
HOH
3124
A
HOH
125
4
HOH
HOH
3125
A
HOH
126
4
HOH
HOH
3126
A
HOH
127
4
HOH
HOH
3127
A
HOH
128
4
HOH
HOH
3128
A
HOH
129
4
HOH
HOH
3129
A
HOH
130
4
HOH
HOH
3130
A
HOH
131
4
HOH
HOH
3131
A
HOH
132
4
HOH
HOH
3132
A
HOH
133
4
HOH
HOH
3133
A
HOH
134
4
HOH
HOH
3134
A
VAL
64
n
1
VAL
64
A
LEU
65
n
2
LEU
65
A
ASP
66
n
3
ASP
66
A
GLY
67
n
4
GLY
67
A
PRO
68
n
5
PRO
68
A
TYR
69
n
6
TYR
69
A
GLN
70
n
7
GLN
70
A
PRO
71
n
8
PRO
71
A
THR
72
n
9
THR
72
A
THR
73
n
10
THR
73
A
PHE
74
n
11
PHE
74
A
ASN
75
n
12
ASN
75
A
PRO
76
n
13
PRO
76
A
PRO
77
n
14
PRO
77
A
VAL
78
n
15
VAL
78
A
ASP
79
n
16
ASP
79
A
TYR
80
n
17
TYR
80
A
TRP
81
n
18
TRP
81
A
MET
82
n
19
MET
82
A
LEU
83
n
20
LEU
83
A
LEU
84
n
21
LEU
84
A
ALA
85
n
22
ALA
85
A
PRO
86
n
23
PRO
86
A
THR
87
n
24
THR
87
A
ALA
88
n
25
ALA
88
A
ALA
89
n
26
ALA
89
A
GLY
90
n
27
GLY
90
A
VAL
91
n
28
VAL
91
A
VAL
92
n
29
VAL
92
A
VAL
93
n
30
VAL
93
A
GLU
94
n
31
GLU
94
A
GLY
95
n
32
GLY
95
A
THR
96
n
33
THR
96
A
ASN
97
n
34
ASN
97
A
ASN
98
n
35
ASN
98
A
THR
99
n
36
THR
99
A
ASP
100
n
37
ASP
100
A
ALA
101
n
38
ALA
101
A
TRP
102
n
39
TRP
102
A
LEU
103
n
40
LEU
103
A
ALA
104
n
41
ALA
104
A
THR
105
n
42
THR
105
A
ILE
106
n
43
ILE
106
A
LEU
107
n
44
LEU
107
A
VAL
108
n
45
VAL
108
A
GLU
109
n
46
GLU
109
A
PRO
110
n
47
PRO
110
A
ASN
111
n
48
ASN
111
A
VAL
112
n
49
VAL
112
A
THR
113
n
50
THR
113
A
SER
114
n
51
SER
114
A
GLU
115
n
52
GLU
115
A
THR
116
n
53
THR
116
A
ARG
117
n
54
ARG
117
A
SER
118
n
55
SER
118
A
TYR
119
n
56
TYR
119
A
THR
120
n
57
THR
120
A
LEU
121
n
58
LEU
121
A
PHE
122
n
59
PHE
122
A
GLY
123
n
60
GLY
123
A
THR
124
n
61
THR
124
A
GLN
125
n
62
GLN
125
A
GLU
126
n
63
GLU
126
A
GLN
127
n
64
GLN
127
A
ILE
128
n
65
ILE
128
A
THR
129
n
66
THR
129
A
ILE
130
n
67
ILE
130
A
ALA
131
n
68
ALA
131
A
ASN
132
n
69
ASN
132
A
ALA
133
n
70
ALA
133
A
SER
134
n
71
SER
134
A
GLN
135
n
72
GLN
135
A
THR
136
n
73
THR
136
A
GLN
137
n
74
GLN
137
A
TRP
138
n
75
TRP
138
A
LYS
139
n
76
LYS
139
A
PHE
140
n
77
PHE
140
A
ILE
141
n
78
ILE
141
A
ASP
142
n
79
ASP
142
A
VAL
143
n
80
VAL
143
A
VAL
144
n
81
VAL
144
A
LYS
145
n
82
LYS
145
A
THR
146
n
83
THR
146
A
THR
147
n
84
THR
147
A
GLN
148
n
85
GLN
148
A
ASN
149
n
86
ASN
149
A
GLY
150
n
87
GLY
150
A
SER
151
n
88
SER
151
A
TYR
152
n
89
TYR
152
A
SER
153
n
90
SER
153
A
GLN
154
n
91
GLN
154
A
TYR
155
n
92
TYR
155
A
GLY
156
n
93
GLY
156
A
PRO
157
n
94
PRO
157
A
LEU
158
n
95
LEU
158
A
GLN
159
n
96
GLN
159
A
SER
160
n
97
SER
160
A
THR
161
n
98
THR
161
A
PRO
162
n
99
PRO
162
A
LYS
163
n
100
LYS
163
A
LEU
164
n
101
LEU
164
A
TYR
165
n
102
TYR
165
A
ALA
166
n
103
ALA
166
A
VAL
167
n
104
VAL
167
A
MET
168
n
105
MET
168
A
LYS
169
n
106
LYS
169
A
HIS
170
n
107
HIS
170
A
ASN
171
n
108
ASN
171
A
GLY
172
n
109
GLY
172
A
LYS
173
n
110
LYS
173
A
ILE
174
n
111
ILE
174
A
TYR
175
n
112
TYR
175
A
THR
176
n
113
THR
176
A
TYR
177
n
114
TYR
177
A
ASN
178
n
115
ASN
178
A
GLY
179
n
116
GLY
179
A
GLU
180
n
117
GLU
180
A
THR
181
n
118
THR
181
A
PRO
182
n
119
PRO
182
A
ASN
183
n
120
ASN
183
A
VAL
184
n
121
VAL
184
A
THR
185
n
122
THR
185
A
THR
186
n
123
THR
186
A
LYS
187
n
124
LYS
187
A
TYR
188
n
125
TYR
188
A
TYR
189
n
126
TYR
189
A
SER
190
n
127
SER
190
A
THR
191
n
128
THR
191
A
THR
192
n
129
THR
192
A
ASN
193
n
130
ASN
193
A
TYR
194
n
131
TYR
194
A
ASP
195
n
132
ASP
195
A
SER
196
n
133
SER
196
A
VAL
197
n
134
VAL
197
A
ASN
198
n
135
ASN
198
A
MET
199
n
136
MET
199
A
THR
200
n
137
THR
200
A
ALA
201
n
138
ALA
201
A
PHE
202
n
139
PHE
202
A
CYS
203
n
140
CYS
203
A
ASP
204
n
141
ASP
204
A
PHE
205
n
142
PHE
205
A
TYR
206
n
143
TYR
206
A
ILE
207
n
144
ILE
207
A
ILE
208
n
145
ILE
208
A
PRO
209
n
146
PRO
209
A
ARG
210
n
147
ARG
210
A
GLU
211
n
148
GLU
211
A
GLU
212
n
149
GLU
212
A
GLU
213
n
150
GLU
213
A
SER
214
n
151
SER
214
A
THR
215
n
152
THR
215
A
CYS
216
n
153
CYS
216
A
THR
217
n
154
THR
217
A
GLU
218
n
155
GLU
218
A
TYR
219
n
156
TYR
219
A
ILE
220
n
157
ILE
220
A
ASN
221
n
158
ASN
221
A
ASN
222
n
159
ASN
222
A
GLY
223
n
160
GLY
223
A
LEU
224
n
161
LEU
224
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
69
A
N
TYR
6
A
O
PHE
205
A
O
PHE
142
A
O
ILE
208
A
O
ILE
145
A
N
TRP
81
A
N
TRP
18
A
N
MET
82
A
N
MET
19
A
O
VAL
167
A
O
VAL
104
A
N
MET
168
A
N
MET
105
A
O
TYR
175
A
O
TYR
112
A
O
GLY
179
A
O
GLY
116
A
N
GLN
159
A
N
GLN
96
A
O
LEU
158
A
O
LEU
95
A
N
PHE
140
A
N
PHE
77
A
O
VAL
143
A
O
VAL
80
A
N
ALA
104
A
N
ALA
41
A
O
THR
105
A
O
THR
42
A
N
VAL
92
A
N
VAL
29
A
N
GLU
94
A
N
GLU
31
A
O
THR
200
A
O
THR
137
A
O
MET
199
A
O
MET
136
A
N
PHE
74
A
N
PHE
11
A
N
TYR
69
A
N
TYR
6
A
O
PHE
205
A
O
PHE
142
A
O
ILE
208
A
O
ILE
145
A
N
TRP
81
A
N
TRP
18
A
N
MET
82
A
N
MET
19
A
O
VAL
167
A
O
VAL
104
A
N
MET
168
A
N
MET
105
A
O
TYR
175
A
O
TYR
112
A
N
ILE
174
A
N
ILE
111
A
O
TYR
189
A
O
TYR
126
A
N
TYR
119
A
N
TYR
56
A
O
GLU
126
A
O
GLU
63
1
A
HOH
3079
D
HOH
1
A
THR
99
-127.64
-55.27
1
A
ASP
100
-140.54
14.08
1
A
ASN
111
66.71
68.22
1
A
SER
114
-32.63
119.30
1
A
PRO
182
-97.83
38.77
18.025
-0.03
0.00
0.00
-0.03
0.00
0.06
0.961
0.943
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.20586
0.16075
0.1629
1.90
45.64
587
11421
4.9
91.67
2.871
0.086
RANDOM
1
THROUGHOUT
FOURIER SYNTHESIS
0.163
0.146
0.80
0.80
1.20
RRV VP8* PDB code 1KQR
MAXIMUM LIKELIHOOD
MASK
1.90
45.64
134
1435
27
0
1274
0.009
0.022
1357
1.217
1.958
1870
6.142
5.000
160
32.627
25.873
63
12.073
15.000
203
2.857
15.000
2
0.085
0.200
220
0.004
0.020
1033
0.200
0.200
543
0.308
0.200
959
0.133
0.200
113
0.146
0.200
39
0.121
0.200
14
0.693
1.500
832
1.115
2.000
1348
1.786
3.000
611
2.648
4.500
522
0.241
0.174
1.949
22
451
20
50.48
1.9
65
2P3J
12064
0
0
0.048
1
11.8
12.7
91.7
0.107
1.9
2.04
4.7
1521
63
refinement
REFMAC
5.2.0005
data collection
PROTEUM PLUS
PLUS
data reduction
SAINT
data scaling
LSCALE
phasing
AMoRE
Crystal structure of the Arg101Ala mutant protein of Rhesus rotavirus VP8*
1
N
N
2
N
N
3
N
N
4
N
N
A
ASN
193
A
ASN
130
HELX_P
A
VAL
197
A
VAL
134
5
1
5
A
GLU
212
A
GLU
149
HELX_P
A
GLY
223
A
GLY
160
1
2
12
VIRAL PROTEIN
beta-sandwich, VIRAL PROTEIN
A
GLY
67
A
GLY
4
1
A
PRO
68
A
PRO
5
1.72
A
THR
181
A
THR
118
1
A
PRO
182
A
PRO
119
5.60
Q91HI9_ROTRH
UNP
1
64
Q91HI9
VLDGPYQPTTFNPPVDYWMLLAPTAAGVVVEGTNNTDRWLATILVEPNVTSETRSYTLFGTQEQITIANASQTQWKFIDV
VKTTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCDFYIIPREEESTCTEYINNG
L
64
224
2P3J
64
224
Q91HI9
A
1
1
161
1
ARG
engineered mutation
ALA
101
2P3J
A
Q91HI9
UNP
101
38
11
6
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ASP
66
A
ASP
3
A
TYR
69
A
TYR
6
A
PHE
205
A
PHE
142
A
PRO
209
A
PRO
146
A
TYR
80
A
TYR
17
A
LEU
84
A
LEU
21
A
TYR
165
A
TYR
102
A
HIS
170
A
HIS
107
A
LYS
173
A
LYS
110
A
GLU
180
A
GLU
117
A
SER
153
A
SER
90
A
SER
160
A
SER
97
A
TRP
138
A
TRP
75
A
LYS
145
A
LYS
82
A
TRP
102
A
TRP
39
A
VAL
108
A
VAL
45
A
GLY
90
A
GLY
27
A
THR
96
A
THR
33
A
ASN
198
A
ASN
135
A
ALA
201
A
ALA
138
A
THR
73
A
THR
10
A
PHE
74
A
PHE
11
A
ASP
66
A
ASP
3
A
TYR
69
A
TYR
6
A
PHE
205
A
PHE
142
A
PRO
209
A
PRO
146
A
TYR
80
A
TYR
17
A
LEU
84
A
LEU
21
A
TYR
165
A
TYR
102
A
HIS
170
A
HIS
107
A
LYS
173
A
LYS
110
A
GLU
180
A
GLU
117
A
THR
185
A
THR
122
A
SER
190
A
SER
127
A
VAL
112
A
VAL
49
A
LEU
121
A
LEU
58
A
THR
124
A
THR
61
A
ASN
132
A
ASN
69
92
P 41 21 2