0.024840
0.000000
0.008287
0.000000
0.018371
0.000000
0.000000
0.000000
0.021938
0.00000
0.00000
0.00000
Tereshko, V.
Uysal, S.
Koide, A.
Margalef, K.
Koide, S.
Kossiakoff, A.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
108.45
90.00
40.257
54.435
48.054
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
17
1175
1187
10.1110/ps.034892.108
18445622
Toward chaperone-assisted crystallography: protein engineering enhancement of crystal packing and X-ray phasing capabilities of a camelid single-domain antibody (VHH) scaffold
2008
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
CCD
2004-04-01
ADSC QUANTUM 210
MAD
M
x-ray
1
0.97955
1.0
0.97935
1.0
17-ID
APS
0.97955, 0.97935
SYNCHROTRON
APS BEAMLINE 17-ID
13708.326
Ribonuclease pancreatic
3.1.27.5
1
nat
polymer
13245.150
ANTIBODY CAB-RN05
1
man
polymer
18.015
water
225
nat
water
RNase 1, RNase A
no
no
KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS
ITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV
KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS
ITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV
A
polypeptide(L)
no
yes
GSQVQLVESGGGLVQAGGSLRLSCAASGYAYTYIY(MSE)GWFRQAPGKEREGVAA(MSE)DSGGGGTLYADSVKGRFTI
SRDKGKNTVYLQ(MSE)DSLKPEDTATYYCAAGGYELRDRTYGQWGQGTQVTVSS
GSQVQLVESGGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNT
VYLQMDSLKPEDTATYYCAAGGYELRDRTYGQWGQGTQVTVSS
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Arabian camel
Camelus
Escherichia
sample
9838
Camelus dromedarius
562
Escherichia coli
cattle
Bos
sample
9913
Bos taurus
1
1.85
33.61
VAPOR DIFFUSION
7.0
HAMPTON RESEARCH INDEX SCREEN, SOLUTION #89: PEG 3350, SUCCINIC ACID, PH 7.0, VAPOR DIFFUSION, temperature 295K
295
repository
Initial release
Advisory
Refinement description
Version format compliance
1
0
2008-03-11
1
1
2011-07-13
SEQUENCE
AT THE TIME OF PROCESSING, THE SEQUENCE OF VHH
ANTIBODY IS NOT AVAILABLE AT THE UNP SEQUENCE DATABASE.
RCSB
Y
RCSB
2007-03-11
REL
REL
HOH
water
RESIDUES -1 TO 0 IN CHAIN B ARE CLONING ARTIFACTS.
HOH
101
3
HOH
HOH
125
A
HOH
102
3
HOH
HOH
126
A
HOH
103
3
HOH
HOH
127
A
HOH
104
3
HOH
HOH
128
A
HOH
105
3
HOH
HOH
129
A
HOH
106
3
HOH
HOH
130
A
HOH
108
3
HOH
HOH
131
A
HOH
109
3
HOH
HOH
132
A
HOH
110
3
HOH
HOH
133
A
HOH
111
3
HOH
HOH
134
A
HOH
112
3
HOH
HOH
135
A
HOH
113
3
HOH
HOH
136
A
HOH
114
3
HOH
HOH
137
A
HOH
115
3
HOH
HOH
138
A
HOH
116
3
HOH
HOH
139
A
HOH
117
3
HOH
HOH
140
A
HOH
118
3
HOH
HOH
141
A
HOH
119
3
HOH
HOH
142
A
HOH
120
3
HOH
HOH
143
A
HOH
121
3
HOH
HOH
144
A
HOH
122
3
HOH
HOH
145
A
HOH
123
3
HOH
HOH
146
A
HOH
124
3
HOH
HOH
147
A
HOH
125
3
HOH
HOH
148
A
HOH
126
3
HOH
HOH
149
A
HOH
127
3
HOH
HOH
150
A
HOH
128
3
HOH
HOH
151
A
HOH
129
3
HOH
HOH
152
A
HOH
130
3
HOH
HOH
153
A
HOH
131
3
HOH
HOH
154
A
HOH
132
3
HOH
HOH
155
A
HOH
133
3
HOH
HOH
156
A
HOH
134
3
HOH
HOH
157
A
HOH
135
3
HOH
HOH
158
A
HOH
136
3
HOH
HOH
159
A
HOH
137
3
HOH
HOH
160
A
HOH
138
3
HOH
HOH
161
A
HOH
139
3
HOH
HOH
162
A
HOH
140
3
HOH
HOH
163
A
HOH
141
3
HOH
HOH
164
A
HOH
142
3
HOH
HOH
165
A
HOH
143
3
HOH
HOH
166
A
HOH
144
3
HOH
HOH
167
A
HOH
145
3
HOH
HOH
168
A
HOH
146
3
HOH
HOH
169
A
HOH
147
3
HOH
HOH
170
A
HOH
148
3
HOH
HOH
171
A
HOH
149
3
HOH
HOH
172
A
HOH
150
3
HOH
HOH
173
A
HOH
151
3
HOH
HOH
174
A
HOH
152
3
HOH
HOH
175
A
HOH
153
3
HOH
HOH
176
A
HOH
154
3
HOH
HOH
177
A
HOH
155
3
HOH
HOH
178
A
HOH
156
3
HOH
HOH
179
A
HOH
157
3
HOH
HOH
180
A
HOH
158
3
HOH
HOH
181
A
HOH
159
3
HOH
HOH
182
A
HOH
160
3
HOH
HOH
183
A
HOH
161
3
HOH
HOH
184
A
HOH
162
3
HOH
HOH
185
A
HOH
163
3
HOH
HOH
186
A
HOH
164
3
HOH
HOH
187
A
HOH
165
3
HOH
HOH
188
A
HOH
166
3
HOH
HOH
189
A
HOH
167
3
HOH
HOH
190
A
HOH
168
3
HOH
HOH
191
A
HOH
169
3
HOH
HOH
192
A
HOH
170
3
HOH
HOH
193
A
HOH
171
3
HOH
HOH
194
A
HOH
172
3
HOH
HOH
195
A
HOH
173
3
HOH
HOH
196
A
HOH
174
3
HOH
HOH
197
A
HOH
175
3
HOH
HOH
198
A
HOH
176
3
HOH
HOH
199
A
HOH
177
3
HOH
HOH
200
A
HOH
178
3
HOH
HOH
201
A
HOH
179
3
HOH
HOH
202
A
HOH
180
3
HOH
HOH
203
A
HOH
181
3
HOH
HOH
204
A
HOH
182
3
HOH
HOH
205
A
HOH
183
3
HOH
HOH
206
A
HOH
184
3
HOH
HOH
207
A
HOH
185
3
HOH
HOH
208
A
HOH
186
3
HOH
HOH
209
A
HOH
187
3
HOH
HOH
210
A
HOH
188
3
HOH
HOH
211
A
HOH
189
3
HOH
HOH
212
A
HOH
190
3
HOH
HOH
213
A
HOH
191
3
HOH
HOH
214
A
HOH
192
3
HOH
HOH
215
A
HOH
193
3
HOH
HOH
216
A
HOH
194
3
HOH
HOH
217
A
HOH
195
3
HOH
HOH
218
A
HOH
196
3
HOH
HOH
219
A
HOH
197
3
HOH
HOH
220
A
HOH
198
3
HOH
HOH
221
A
HOH
199
3
HOH
HOH
222
A
HOH
200
3
HOH
HOH
223
A
HOH
202
3
HOH
HOH
224
A
HOH
203
3
HOH
HOH
225
A
HOH
204
3
HOH
HOH
226
A
HOH
205
3
HOH
HOH
227
A
HOH
206
3
HOH
HOH
228
A
HOH
207
3
HOH
HOH
229
A
HOH
208
3
HOH
HOH
230
A
HOH
209
3
HOH
HOH
231
A
HOH
210
3
HOH
HOH
232
A
HOH
211
3
HOH
HOH
233
A
HOH
212
3
HOH
HOH
234
A
HOH
213
3
HOH
HOH
235
A
HOH
227
3
HOH
HOH
236
A
HOH
303
3
HOH
HOH
237
A
HOH
1001
3
HOH
HOH
238
A
HOH
1003
3
HOH
HOH
239
A
HOH
1004
3
HOH
HOH
240
A
HOH
1013
3
HOH
HOH
241
A
HOH
1015
3
HOH
HOH
242
A
HOH
1017
3
HOH
HOH
243
A
HOH
1020
3
HOH
HOH
244
A
HOH
1022
3
HOH
HOH
245
A
HOH
107
3
HOH
HOH
122
B
HOH
201
3
HOH
HOH
123
B
HOH
214
3
HOH
HOH
124
B
HOH
215
3
HOH
HOH
125
B
HOH
216
3
HOH
HOH
126
B
HOH
217
3
HOH
HOH
127
B
HOH
218
3
HOH
HOH
128
B
HOH
219
3
HOH
HOH
129
B
HOH
220
3
HOH
HOH
130
B
HOH
221
3
HOH
HOH
131
B
HOH
222
3
HOH
HOH
132
B
HOH
223
3
HOH
HOH
133
B
HOH
224
3
HOH
HOH
134
B
HOH
225
3
HOH
HOH
135
B
HOH
226
3
HOH
HOH
136
B
HOH
228
3
HOH
HOH
137
B
HOH
229
3
HOH
HOH
138
B
HOH
230
3
HOH
HOH
139
B
HOH
231
3
HOH
HOH
140
B
HOH
232
3
HOH
HOH
141
B
HOH
233
3
HOH
HOH
142
B
HOH
234
3
HOH
HOH
143
B
HOH
235
3
HOH
HOH
144
B
HOH
236
3
HOH
HOH
145
B
HOH
237
3
HOH
HOH
146
B
HOH
238
3
HOH
HOH
147
B
HOH
239
3
HOH
HOH
148
B
HOH
240
3
HOH
HOH
149
B
HOH
241
3
HOH
HOH
150
B
HOH
242
3
HOH
HOH
151
B
HOH
243
3
HOH
HOH
152
B
HOH
244
3
HOH
HOH
153
B
HOH
245
3
HOH
HOH
154
B
HOH
246
3
HOH
HOH
155
B
HOH
247
3
HOH
HOH
156
B
HOH
248
3
HOH
HOH
157
B
HOH
249
3
HOH
HOH
158
B
HOH
250
3
HOH
HOH
159
B
HOH
251
3
HOH
HOH
160
B
HOH
252
3
HOH
HOH
161
B
HOH
253
3
HOH
HOH
162
B
HOH
254
3
HOH
HOH
163
B
HOH
255
3
HOH
HOH
164
B
HOH
256
3
HOH
HOH
165
B
HOH
257
3
HOH
HOH
166
B
HOH
258
3
HOH
HOH
167
B
HOH
259
3
HOH
HOH
168
B
HOH
260
3
HOH
HOH
169
B
HOH
261
3
HOH
HOH
170
B
HOH
262
3
HOH
HOH
171
B
HOH
263
3
HOH
HOH
172
B
HOH
264
3
HOH
HOH
173
B
HOH
265
3
HOH
HOH
174
B
HOH
266
3
HOH
HOH
175
B
HOH
267
3
HOH
HOH
176
B
HOH
268
3
HOH
HOH
177
B
HOH
269
3
HOH
HOH
178
B
HOH
270
3
HOH
HOH
179
B
HOH
271
3
HOH
HOH
180
B
HOH
272
3
HOH
HOH
181
B
HOH
273
3
HOH
HOH
182
B
HOH
274
3
HOH
HOH
183
B
HOH
275
3
HOH
HOH
184
B
HOH
276
3
HOH
HOH
185
B
HOH
277
3
HOH
HOH
186
B
HOH
278
3
HOH
HOH
187
B
HOH
279
3
HOH
HOH
188
B
HOH
280
3
HOH
HOH
189
B
HOH
281
3
HOH
HOH
190
B
HOH
282
3
HOH
HOH
191
B
HOH
283
3
HOH
HOH
192
B
HOH
284
3
HOH
HOH
193
B
HOH
285
3
HOH
HOH
194
B
HOH
286
3
HOH
HOH
195
B
HOH
287
3
HOH
HOH
196
B
HOH
288
3
HOH
HOH
197
B
HOH
289
3
HOH
HOH
198
B
HOH
290
3
HOH
HOH
199
B
HOH
291
3
HOH
HOH
200
B
HOH
292
3
HOH
HOH
201
B
HOH
293
3
HOH
HOH
202
B
HOH
294
3
HOH
HOH
203
B
HOH
295
3
HOH
HOH
204
B
HOH
296
3
HOH
HOH
205
B
HOH
297
3
HOH
HOH
206
B
HOH
298
3
HOH
HOH
207
B
HOH
299
3
HOH
HOH
208
B
HOH
300
3
HOH
HOH
209
B
HOH
301
3
HOH
HOH
210
B
HOH
302
3
HOH
HOH
211
B
HOH
304
3
HOH
HOH
212
B
HOH
305
3
HOH
HOH
213
B
HOH
306
3
HOH
HOH
214
B
HOH
307
3
HOH
HOH
215
B
HOH
308
3
HOH
HOH
216
B
HOH
309
3
HOH
HOH
217
B
HOH
310
3
HOH
HOH
218
B
HOH
311
3
HOH
HOH
219
B
HOH
1002
3
HOH
HOH
220
B
HOH
1011
3
HOH
HOH
221
B
HOH
1012
3
HOH
HOH
222
B
HOH
1014
3
HOH
HOH
223
B
HOH
1016
3
HOH
HOH
224
B
HOH
1023
3
HOH
HOH
225
B
LYS
1
n
1
LYS
1
A
GLU
2
n
2
GLU
2
A
THR
3
n
3
THR
3
A
ALA
4
n
4
ALA
4
A
ALA
5
n
5
ALA
5
A
ALA
6
n
6
ALA
6
A
LYS
7
n
7
LYS
7
A
PHE
8
n
8
PHE
8
A
GLU
9
n
9
GLU
9
A
ARG
10
n
10
ARG
10
A
GLN
11
n
11
GLN
11
A
HIS
12
n
12
HIS
12
A
MET
13
n
13
MET
13
A
ASP
14
n
14
ASP
14
A
SER
15
n
15
SER
15
A
SER
16
n
16
SER
16
A
THR
17
n
17
THR
17
A
SER
18
n
18
SER
18
A
ALA
19
n
19
ALA
19
A
ALA
20
n
20
ALA
20
A
SER
21
n
21
SER
21
A
SER
22
n
22
SER
22
A
SER
23
n
23
SER
23
A
ASN
24
n
24
ASN
24
A
TYR
25
n
25
TYR
25
A
CYS
26
n
26
CYS
26
A
ASN
27
n
27
ASN
27
A
GLN
28
n
28
GLN
28
A
MET
29
n
29
MET
29
A
MET
30
n
30
MET
30
A
LYS
31
n
31
LYS
31
A
SER
32
n
32
SER
32
A
ARG
33
n
33
ARG
33
A
ASN
34
n
34
ASN
34
A
LEU
35
n
35
LEU
35
A
THR
36
n
36
THR
36
A
LYS
37
n
37
LYS
37
A
ASP
38
n
38
ASP
38
A
ARG
39
n
39
ARG
39
A
CYS
40
n
40
CYS
40
A
LYS
41
n
41
LYS
41
A
PRO
42
n
42
PRO
42
A
VAL
43
n
43
VAL
43
A
ASN
44
n
44
ASN
44
A
THR
45
n
45
THR
45
A
PHE
46
n
46
PHE
46
A
VAL
47
n
47
VAL
47
A
HIS
48
n
48
HIS
48
A
GLU
49
n
49
GLU
49
A
SER
50
n
50
SER
50
A
LEU
51
n
51
LEU
51
A
ALA
52
n
52
ALA
52
A
ASP
53
n
53
ASP
53
A
VAL
54
n
54
VAL
54
A
GLN
55
n
55
GLN
55
A
ALA
56
n
56
ALA
56
A
VAL
57
n
57
VAL
57
A
CYS
58
n
58
CYS
58
A
SER
59
n
59
SER
59
A
GLN
60
n
60
GLN
60
A
LYS
61
n
61
LYS
61
A
ASN
62
n
62
ASN
62
A
VAL
63
n
63
VAL
63
A
ALA
64
n
64
ALA
64
A
CYS
65
n
65
CYS
65
A
LYS
66
n
66
LYS
66
A
ASN
67
n
67
ASN
67
A
GLY
68
n
68
GLY
68
A
GLN
69
n
69
GLN
69
A
THR
70
n
70
THR
70
A
ASN
71
n
71
ASN
71
A
CYS
72
n
72
CYS
72
A
TYR
73
n
73
TYR
73
A
GLN
74
n
74
GLN
74
A
SER
75
n
75
SER
75
A
TYR
76
n
76
TYR
76
A
SER
77
n
77
SER
77
A
THR
78
n
78
THR
78
A
MET
79
n
79
MET
79
A
SER
80
n
80
SER
80
A
ILE
81
n
81
ILE
81
A
THR
82
n
82
THR
82
A
ASP
83
n
83
ASP
83
A
CYS
84
n
84
CYS
84
A
ARG
85
n
85
ARG
85
A
GLU
86
n
86
GLU
86
A
THR
87
n
87
THR
87
A
GLY
88
n
88
GLY
88
A
SER
89
n
89
SER
89
A
SER
90
n
90
SER
90
A
LYS
91
n
91
LYS
91
A
TYR
92
n
92
TYR
92
A
PRO
93
n
93
PRO
93
A
ASN
94
n
94
ASN
94
A
CYS
95
n
95
CYS
95
A
ALA
96
n
96
ALA
96
A
TYR
97
n
97
TYR
97
A
LYS
98
n
98
LYS
98
A
THR
99
n
99
THR
99
A
THR
100
n
100
THR
100
A
GLN
101
n
101
GLN
101
A
ALA
102
n
102
ALA
102
A
ASN
103
n
103
ASN
103
A
LYS
104
n
104
LYS
104
A
HIS
105
n
105
HIS
105
A
ILE
106
n
106
ILE
106
A
ILE
107
n
107
ILE
107
A
VAL
108
n
108
VAL
108
A
ALA
109
n
109
ALA
109
A
CYS
110
n
110
CYS
110
A
GLU
111
n
111
GLU
111
A
GLY
112
n
112
GLY
112
A
ASN
113
n
113
ASN
113
A
PRO
114
n
114
PRO
114
A
TYR
115
n
115
TYR
115
A
VAL
116
n
116
VAL
116
A
PRO
117
n
117
PRO
117
A
VAL
118
n
118
VAL
118
A
HIS
119
n
119
HIS
119
A
PHE
120
n
120
PHE
120
A
ASP
121
n
121
ASP
121
A
ALA
122
n
122
ALA
122
A
SER
123
n
123
SER
123
A
VAL
124
n
124
VAL
124
A
GLY
-1
n
1
GLY
-1
B
SER
0
n
2
SER
0
B
GLN
1
n
3
GLN
1
B
VAL
2
n
4
VAL
2
B
GLN
3
n
5
GLN
3
B
LEU
4
n
6
LEU
4
B
VAL
5
n
7
VAL
5
B
GLU
6
n
8
GLU
6
B
SER
7
n
9
SER
7
B
GLY
8
n
10
GLY
8
B
GLY
9
n
11
GLY
9
B
GLY
10
n
12
GLY
10
B
LEU
11
n
13
LEU
11
B
VAL
12
n
14
VAL
12
B
GLN
13
n
15
GLN
13
B
ALA
14
n
16
ALA
14
B
GLY
15
n
17
GLY
15
B
GLY
16
n
18
GLY
16
B
SER
17
n
19
SER
17
B
LEU
18
n
20
LEU
18
B
ARG
19
n
21
ARG
19
B
LEU
20
n
22
LEU
20
B
SER
21
n
23
SER
21
B
CYS
22
n
24
CYS
22
B
ALA
23
n
25
ALA
23
B
ALA
24
n
26
ALA
24
B
SER
25
n
27
SER
25
B
GLY
26
n
28
GLY
26
B
TYR
27
n
29
TYR
27
B
ALA
28
n
30
ALA
28
B
TYR
29
n
31
TYR
29
B
THR
30
n
32
THR
30
B
TYR
31
n
33
TYR
31
B
ILE
32
n
34
ILE
32
B
TYR
33
n
35
TYR
33
B
MSE
34
n
36
MSE
34
B
GLY
35
n
37
GLY
35
B
TRP
36
n
38
TRP
36
B
PHE
37
n
39
PHE
37
B
ARG
38
n
40
ARG
38
B
GLN
39
n
41
GLN
39
B
ALA
40
n
42
ALA
40
B
PRO
41
n
43
PRO
41
B
GLY
42
n
44
GLY
42
B
LYS
43
n
45
LYS
43
B
GLU
44
n
46
GLU
44
B
ARG
45
n
47
ARG
45
B
GLU
46
n
48
GLU
46
B
GLY
47
n
49
GLY
47
B
VAL
48
n
50
VAL
48
B
ALA
49
n
51
ALA
49
B
ALA
50
n
52
ALA
50
B
MSE
51
n
53
MSE
51
B
ASP
52
n
54
ASP
52
B
SER
53
n
55
SER
53
B
GLY
54
n
56
GLY
54
B
GLY
55
n
57
GLY
55
B
GLY
56
n
58
GLY
56
B
GLY
57
n
59
GLY
57
B
THR
58
n
60
THR
58
B
LEU
59
n
61
LEU
59
B
TYR
60
n
62
TYR
60
B
ALA
61
n
63
ALA
61
B
ASP
62
n
64
ASP
62
B
SER
63
n
65
SER
63
B
VAL
64
n
66
VAL
64
B
LYS
65
n
67
LYS
65
B
GLY
66
n
68
GLY
66
B
ARG
67
n
69
ARG
67
B
PHE
68
n
70
PHE
68
B
THR
69
n
71
THR
69
B
ILE
70
n
72
ILE
70
B
SER
71
n
73
SER
71
B
ARG
72
n
74
ARG
72
B
ASP
73
n
75
ASP
73
B
LYS
74
n
76
LYS
74
B
GLY
75
n
77
GLY
75
B
LYS
76
n
78
LYS
76
B
ASN
77
n
79
ASN
77
B
THR
78
n
80
THR
78
B
VAL
79
n
81
VAL
79
B
TYR
80
n
82
TYR
80
B
LEU
81
n
83
LEU
81
B
GLN
82
n
84
GLN
82
B
MSE
83
n
85
MSE
83
B
ASP
84
n
86
ASP
84
B
SER
85
n
87
SER
85
B
LEU
86
n
88
LEU
86
B
LYS
87
n
89
LYS
87
B
PRO
88
n
90
PRO
88
B
GLU
89
n
91
GLU
89
B
ASP
90
n
92
ASP
90
B
THR
91
n
93
THR
91
B
ALA
92
n
94
ALA
92
B
THR
93
n
95
THR
93
B
TYR
94
n
96
TYR
94
B
TYR
95
n
97
TYR
95
B
CYS
96
n
98
CYS
96
B
ALA
97
n
99
ALA
97
B
ALA
98
n
100
ALA
98
B
GLY
99
n
101
GLY
99
B
GLY
100
n
102
GLY
100
B
TYR
101
n
103
TYR
101
B
GLU
102
n
104
GLU
102
B
LEU
103
n
105
LEU
103
B
ARG
104
n
106
ARG
104
B
ASP
105
n
107
ASP
105
B
ARG
106
n
108
ARG
106
B
THR
107
n
109
THR
107
B
TYR
108
n
110
TYR
108
B
GLY
109
n
111
GLY
109
B
GLN
110
n
112
GLN
110
B
TRP
111
n
113
TRP
111
B
GLY
112
n
114
GLY
112
B
GLN
113
n
115
GLN
113
B
GLY
114
n
116
GLY
114
B
THR
115
n
117
THR
115
B
GLN
116
n
118
GLN
116
B
VAL
117
n
119
VAL
117
B
THR
118
n
120
THR
118
B
VAL
119
n
121
VAL
119
B
SER
120
n
122
SER
120
B
SER
121
n
123
SER
121
B
0.6087
-0.5005
0.2287
0.6446
-0.1736
0.4150
-0.0444
-0.0384
-0.0296
0.0456
0.0448
-0.0244
0.0027
-0.0145
-0.0004
-0.0320
0.0010
0.0249
-0.0033
0.0002
-0.0441
refined
22.7108
34.0890
18.4838
X-RAY DIFFRACTION
1.1171
-0.4115
0.4222
0.7119
-0.1190
0.6280
-0.0332
0.0091
0.0014
-0.0249
0.0310
0.0470
-0.0110
0.0279
0.0022
-0.0117
-0.0050
0.0216
0.0013
0.0030
-0.0259
refined
1.8080
51.6308
0.0465
X-RAY DIFFRACTION
A
1
A
124
X-RAY DIFFRACTION
1
A
125
A
235
X-RAY DIFFRACTION
1
B
122
B
123
X-RAY DIFFRACTION
1
B
0
B
121
X-RAY DIFFRACTION
2
A
236
A
237
X-RAY DIFFRACTION
2
B
124
B
219
X-RAY DIFFRACTION
2
A
238
A
245
X-RAY DIFFRACTION
2
B
220
B
225
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
2
dimeric
1170
-3.9
12140
B
MSE
34
SELENOMETHIONINE
B
MSE
36
MET
B
MSE
51
SELENOMETHIONINE
B
MSE
53
MET
B
MSE
83
SELENOMETHIONINE
B
MSE
85
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
46
A
N
PHE
46
A
O
THR
82
A
O
THR
82
A
N
ASP
83
A
N
ASP
83
A
O
THR
100
A
O
THR
100
A
O
VAL
108
A
O
VAL
108
A
N
TYR
73
A
N
TYR
73
A
O
GLN
74
A
O
GLN
74
A
N
LYS
61
A
N
LYS
61
A
N
PHE
46
A
N
PHE
46
A
O
THR
82
A
O
THR
82
A
N
ASP
83
A
N
ASP
83
A
O
THR
100
A
O
THR
100
A
N
ALA
109
A
N
ALA
109
A
O
VAL
118
A
O
VAL
118
B
N
SER
7
B
N
SER
9
B
O
SER
21
B
O
SER
23
B
N
LEU
18
B
N
LEU
20
B
O
MSE
83
B
O
MSE
85
B
O
GLN
82
B
O
GLN
84
B
N
THR
69
B
N
THR
71
B
N
VAL
12
B
N
VAL
14
B
O
THR
118
B
O
THR
120
B
O
THR
115
B
O
THR
117
B
N
TYR
94
B
N
TYR
96
B
O
TYR
95
B
O
TYR
97
B
N
PHE
37
B
N
PHE
39
B
N
TRP
36
B
N
TRP
38
B
O
ALA
49
B
O
ALA
51
B
N
ALA
50
B
N
ALA
52
B
O
LEU
59
B
O
LEU
61
B
N
VAL
12
B
N
VAL
14
B
O
THR
118
B
O
THR
120
B
O
THR
115
B
O
THR
117
B
N
TYR
94
B
N
TYR
96
B
N
ALA
98
B
N
ALA
100
B
O
GLN
110
B
O
GLN
112
1
A
ASN
34
70.35
30.14
1
A
HIS
48
-100.76
60.77
1
A
GLN
60
-99.90
-137.53
1
A
ASN
94
-103.73
71.15
1
B
TYR
29
-114.17
-167.01
1
B
ALA
92
179.59
167.89
1
B
GLU
102
52.00
-135.38
15.503
-0.83
0.00
-1.17
-1.03
0.00
1.11
0.966
0.945
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.20227
0.1583
0.16052
0.16052
1.65
20.00
1180
23613
5.0
99.55
4.195
0.066
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0
0
MAD
0.103
0.104
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.65
20.00
225
2096
0
0
1871
0.011
0.019
1920
0.001
0.020
1628
1.097
1.890
2594
0.729
2.145
3811
6.432
5.000
246
33.007
24.302
86
13.161
15.000
316
16.467
15.000
11
0.053
0.200
275
0.007
0.020
2193
0.001
0.020
392
0.198
0.200
311
0.197
0.200
1611
0.083
0.200
1090
0.144
0.200
147
0.121
0.200
12
0.224
0.200
55
0.140
0.200
20
1.329
1.500
1501
0.318
1.500
522
1.618
2.000
1950
2.701
3.000
798
3.584
4.500
644
0.233
0.175
1.695
80
1588
20
1.65
20
2P43
23613
0
0
0.063
1
3.2
99.9
refinement
REFMAC
5.1.9999
data collection
HKL-3000
data reduction
HKL-3000
data scaling
HKL-3000
phasing
SOLVE
Complex of a camelid single-domain vhh antibody fragment with RNASE A at 1.65A resolution: SE3-mono-1 crystal form with three se-met sites (M34, M51, M83) in vhh scaffold
Complex of a camelid single-domain vhh antibody fragment with RNASE A at 1.65A resolution: SE3-mono-1 crystal form with three se-met sites (M34, M51, M83) in vhh scaffold
1
N
N
2
N
N
3
N
N
3
N
N
A
THR
3
A
THR
3
HELX_P
A
MET
13
A
MET
13
1
1
11
A
ASN
24
A
ASN
24
HELX_P
A
ARG
33
A
ARG
33
1
2
10
A
SER
50
A
SER
50
HELX_P
A
ALA
56
A
ALA
56
1
3
7
A
VAL
57
A
VAL
57
HELX_P
A
GLN
60
A
GLN
60
5
4
4
B
ASP
62
B
ASP
64
HELX_P
B
LYS
65
B
LYS
67
5
5
4
B
LYS
87
B
LYS
89
HELX_P
B
THR
91
B
THR
93
5
6
5
B
ARG
104
B
ARG
106
HELX_P
B
TYR
108
B
TYR
110
5
7
5
disulf
2.033
A
CYS
26
A
SG
CYS
26
1_555
A
CYS
84
A
SG
CYS
84
1_555
disulf
2.025
A
CYS
40
A
SG
CYS
40
1_555
A
CYS
95
A
SG
CYS
95
1_555
disulf
2.052
A
CYS
58
A
SG
CYS
58
1_555
A
CYS
110
A
SG
CYS
110
1_555
disulf
2.047
A
CYS
65
A
SG
CYS
65
1_555
A
CYS
72
A
SG
CYS
72
1_555
disulf
2.065
B
CYS
22
B
SG
CYS
24
1_555
B
CYS
96
B
SG
CYS
98
1_555
covale
1.329
B
TYR
33
B
C
TYR
35
1_555
B
MSE
34
B
N
MSE
36
1_555
covale
1.316
B
MSE
34
B
C
MSE
36
1_555
B
GLY
35
B
N
GLY
37
1_555
covale
1.313
B
ALA
50
B
C
ALA
52
1_555
B
MSE
51
B
N
MSE
53
1_555
covale
1.325
B
MSE
51
B
C
MSE
53
1_555
B
ASP
52
B
N
ASP
54
1_555
covale
1.328
B
GLN
82
B
C
GLN
84
1_555
B
MSE
83
B
N
MSE
85
1_555
covale
1.323
B
MSE
83
B
C
MSE
85
1_555
B
ASP
84
B
N
ASP
86
1_555
HYDROLASE/IMMUNE SYSTEM
SEMET PHASING, CAMELID SINGLE-DOMAIN ANTIBODY, VHH, CAB-RN05, RNASE A, YEAST SURFACE DISPLAY, HYDROLASE, HYDROLASE-IMMUNE SYSTEM COMPLEX
A
TYR
92
A
TYR
92
1
A
PRO
93
A
PRO
93
14.36
A
ASN
113
A
ASN
113
1
A
PRO
114
A
PRO
114
22.08
RNAS1_BOVIN
UNP
1
27
P61823
KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS
ITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV
2P43
PDB
2
2P43
27
150
2P43
1
124
P61823
A
1
1
124
-1
121
2P43
-1
121
2P43
B
2
1
123
5
4
4
6
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
VAL
43
A
VAL
43
A
VAL
47
A
VAL
47
A
MET
79
A
MET
79
A
GLU
86
A
GLU
86
A
TYR
97
A
TYR
97
A
GLU
111
A
GLU
111
A
CYS
72
A
CYS
72
A
GLN
74
A
GLN
74
A
LYS
61
A
LYS
61
A
VAL
63
A
VAL
63
A
VAL
43
A
VAL
43
A
VAL
47
A
VAL
47
A
MET
79
A
MET
79
A
GLU
86
A
GLU
86
A
TYR
97
A
TYR
97
A
GLU
111
A
GLU
111
A
VAL
116
A
VAL
116
A
VAL
124
A
VAL
124
B
GLN
3
B
GLN
5
B
GLY
8
B
GLY
10
B
LEU
18
B
LEU
20
B
SER
25
B
SER
27
B
THR
78
B
THR
80
B
MSE
83
B
MSE
85
B
PHE
68
B
PHE
70
B
SER
71
B
SER
73
B
GLY
10
B
GLY
12
B
GLN
13
B
GLN
15
B
THR
115
B
THR
117
B
SER
120
B
SER
122
B
ALA
92
B
ALA
94
B
ALA
98
B
ALA
100
B
TYR
33
B
TYR
35
B
GLN
39
B
GLN
41
B
GLU
46
B
GLU
48
B
ASP
52
B
ASP
54
B
LEU
59
B
LEU
61
B
TYR
60
B
TYR
62
B
GLY
10
B
GLY
12
B
GLN
13
B
GLN
15
B
THR
115
B
THR
117
B
SER
120
B
SER
122
B
ALA
92
B
ALA
94
B
ALA
98
B
ALA
100
B
GLN
110
B
GLN
112
B
TRP
111
B
TRP
113
4
P 1 21 1