0.004427 0.002556 0.000000 0.000000 0.005112 0.000000 0.000000 0.000000 0.013208 0.00000 0.00000 0.00000 Perni, R.B. Wei, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 36 90.00 90.00 120.00 225.870 225.870 75.710 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C37 H57 N7 O8 727.891 (2S,3AS,7AS)-1-[(2S)-2-{[(2S)-2-CYCLOHEXYL-2-({[(2R)-4-NITRO-2H-PYRROL-2-YL]CARBONYL}AMINO)ACETYL]AMINO}-3,3-DIMETHYLBUTANOYL]-N-{(1S)-1-[(1R)-2-(CYCLOPROPYLAMINO)-1-HYDROXY-2-OXOETHYL]BUTYL}OCTAHYDRO-1H-INDOLE-2-CARBOXAMIDE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Bioorg.Med.Chem.Lett. BMCLE8 1127 0960-894X 17 3406 3411 10.1016/j.bmcl.2007.03.090 17482818 Inhibitors of hepatitis C virus NS3.4A protease. Effect of P4 capping groups on inhibitory potency and pharmacokinetics. 2007 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 170 1 mirrors IMAGE PLATE 2001-01-01 RIGAKU RAXIS IV mirrors SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU300 19179.945 NS3 HCV NS3.4A protease domain 2 man polymer 2077.577 peptide 2 syn polymer 727.891 (2S,3AS,7AS)-1-[(2S)-2-{[(2S)-2-CYCLOHEXYL-2-({[(2R)-4-NITRO-2H-PYRROL-2-YL]CARBONYL}AMINO)ACETYL]AMINO}-3,3-DIMETHYLBUTANOYL]-N-{(1S)-1-[(1R)-2-(CYCLOPROPYLAMINO)-1-HYDROXY-2-OXOETHYL]BUTYL}OCTAHYDRO-1H-INDOLE-2-CARBOXAMIDE 1 syn non-polymer no no APITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQ DLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCT RGVAKAVDFIPVENLETTMRS APITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQ DLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCT RGVAKAVDFIPVENLETTMRS A,B polypeptide(L) no no KGSVVIVGRIVLSGKPAIIPA KGSVVIVGRIVLSGKPAIIPA C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Hepacivirus HCV-H strain Escherichia Escherichia coli sample NS3 protease domain 11103 Hepatitis C virus 469008 Escherichia coli BL21(DE3) BL21/DE3 plasmid pBEV10 1 4.37 71.84 VAPOR DIFFUSION, HANGING DROP 6.2 1.6M NaCl, 0.3M KH2PO4, 0.1M MES, 10.0 mM PME, protein concentration 9.3 mg/ml, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 repository Initial release Version format compliance 1 0 2008-02-05 1 1 2011-07-13 RCSB Y RCSB 2007-03-14 REL REL GG4 (2S,3AS,7AS)-1-[(2S)-2-{[(2S)-2-CYCLOHEXYL-2-({[(2R)-4-NITRO-2H-PYRROL-2-YL]CARBONYL}AMINO)ACETYL]AMINO}-3,3-DIMETHYLBUTANOYL]-N-{(1S)-1-[(1R)-2-(CYCLOPROPYLAMINO)-1-HYDROXY-2-OXOETHYL]BUTYL}OCTAHYDRO-1H-INDOLE-2-CARBOXAMIDE synthetic peptide sample GG4 1165 3 GG4 GG4 1208 B n 1 27 A n 2 28 A n 3 29 A n 4 30 A n 5 31 A n 6 32 A n 7 33 A n 8 34 A n 9 35 A n 10 36 A n 11 37 A n 12 38 A n 13 39 A n 14 40 A n 15 41 A n 16 42 A n 17 43 A n 18 44 A n 19 45 A n 20 46 A n 21 47 A n 22 48 A n 23 49 A n 24 50 A n 25 51 A n 26 52 A n 27 53 A n 28 54 A VAL 55 n 29 VAL 55 A GLU 56 n 30 GLU 56 A GLY 57 n 31 GLY 57 A GLU 58 n 32 GLU 58 A VAL 59 n 33 VAL 59 A GLN 60 n 34 GLN 60 A ILE 61 n 35 ILE 61 A VAL 62 n 36 VAL 62 A SER 63 n 37 SER 63 A THR 64 n 38 THR 64 A ALA 65 n 39 ALA 65 A THR 66 n 40 THR 66 A GLN 67 n 41 GLN 67 A THR 68 n 42 THR 68 A PHE 69 n 43 PHE 69 A LEU 70 n 44 LEU 70 A ALA 71 n 45 ALA 71 A THR 72 n 46 THR 72 A CYS 73 n 47 CYS 73 A ILE 74 n 48 ILE 74 A ASN 75 n 49 ASN 75 A GLY 76 n 50 GLY 76 A VAL 77 n 51 VAL 77 A CYS 78 n 52 CYS 78 A TRP 79 n 53 TRP 79 A THR 80 n 54 THR 80 A VAL 81 n 55 VAL 81 A TYR 82 n 56 TYR 82 A HIS 83 n 57 HIS 83 A GLY 84 n 58 GLY 84 A ALA 85 n 59 ALA 85 A GLY 86 n 60 GLY 86 A THR 87 n 61 THR 87 A ARG 88 n 62 ARG 88 A THR 89 n 63 THR 89 A ILE 90 n 64 ILE 90 A ALA 91 n 65 ALA 91 A SER 92 n 66 SER 92 A PRO 93 n 67 PRO 93 A LYS 94 n 68 LYS 94 A GLY 95 n 69 GLY 95 A PRO 96 n 70 PRO 96 A VAL 97 n 71 VAL 97 A ILE 98 n 72 ILE 98 A GLN 99 n 73 GLN 99 A MET 100 n 74 MET 100 A TYR 101 n 75 TYR 101 A THR 102 n 76 THR 102 A ASN 103 n 77 ASN 103 A VAL 104 n 78 VAL 104 A ASP 105 n 79 ASP 105 A GLN 106 n 80 GLN 106 A ASP 107 n 81 ASP 107 A LEU 108 n 82 LEU 108 A VAL 109 n 83 VAL 109 A GLY 110 n 84 GLY 110 A TRP 111 n 85 TRP 111 A PRO 112 n 86 PRO 112 A ALA 113 n 87 ALA 113 A PRO 114 n 88 PRO 114 A GLN 115 n 89 GLN 115 A GLY 116 n 90 GLY 116 A SER 117 n 91 SER 117 A ARG 118 n 92 ARG 118 A SER 119 n 93 SER 119 A LEU 120 n 94 LEU 120 A THR 121 n 95 THR 121 A PRO 122 n 96 PRO 122 A CYS 123 n 97 CYS 123 A THR 124 n 98 THR 124 A CYS 125 n 99 CYS 125 A GLY 126 n 100 GLY 126 A SER 127 n 101 SER 127 A SER 128 n 102 SER 128 A ASP 129 n 103 ASP 129 A LEU 130 n 104 LEU 130 A TYR 131 n 105 TYR 131 A LEU 132 n 106 LEU 132 A VAL 133 n 107 VAL 133 A THR 134 n 108 THR 134 A ARG 135 n 109 ARG 135 A HIS 136 n 110 HIS 136 A ALA 137 n 111 ALA 137 A ASP 138 n 112 ASP 138 A VAL 139 n 113 VAL 139 A ILE 140 n 114 ILE 140 A PRO 141 n 115 PRO 141 A VAL 142 n 116 VAL 142 A ARG 143 n 117 ARG 143 A ARG 144 n 118 ARG 144 A ARG 145 n 119 ARG 145 A GLY 146 n 120 GLY 146 A ASP 147 n 121 ASP 147 A SER 148 n 122 SER 148 A ARG 149 n 123 ARG 149 A GLY 150 n 124 GLY 150 A SER 151 n 125 SER 151 A LEU 152 n 126 LEU 152 A LEU 153 n 127 LEU 153 A SER 154 n 128 SER 154 A PRO 155 n 129 PRO 155 A ARG 156 n 130 ARG 156 A PRO 157 n 131 PRO 157 A ILE 158 n 132 ILE 158 A SER 159 n 133 SER 159 A TYR 160 n 134 TYR 160 A LEU 161 n 135 LEU 161 A LYS 162 n 136 LYS 162 A GLY 163 n 137 GLY 163 A SER 164 n 138 SER 164 A SER 165 n 139 SER 165 A GLY 166 n 140 GLY 166 A GLY 167 n 141 GLY 167 A PRO 168 n 142 PRO 168 A LEU 169 n 143 LEU 169 A LEU 170 n 144 LEU 170 A CYS 171 n 145 CYS 171 A PRO 172 n 146 PRO 172 A ALA 173 n 147 ALA 173 A GLY 174 n 148 GLY 174 A HIS 175 n 149 HIS 175 A ALA 176 n 150 ALA 176 A VAL 177 n 151 VAL 177 A GLY 178 n 152 GLY 178 A LEU 179 n 153 LEU 179 A PHE 180 n 154 PHE 180 A ARG 181 n 155 ARG 181 A ALA 182 n 156 ALA 182 A ALA 183 n 157 ALA 183 A VAL 184 n 158 VAL 184 A CYS 185 n 159 CYS 185 A THR 186 n 160 THR 186 A ARG 187 n 161 ARG 187 A GLY 188 n 162 GLY 188 A VAL 189 n 163 VAL 189 A ALA 190 n 164 ALA 190 A LYS 191 n 165 LYS 191 A ALA 192 n 166 ALA 192 A VAL 193 n 167 VAL 193 A ASP 194 n 168 ASP 194 A PHE 195 n 169 PHE 195 A ILE 196 n 170 ILE 196 A PRO 197 n 171 PRO 197 A VAL 198 n 172 VAL 198 A GLU 199 n 173 GLU 199 A ASN 200 n 174 ASN 200 A LEU 201 n 175 LEU 201 A GLU 202 n 176 GLU 202 A THR 203 n 177 THR 203 A THR 204 n 178 THR 204 A MET 205 n 179 MET 205 A n 180 206 A n 181 207 A ALA 1027 n 1 ALA 1027 B PRO 1028 n 2 PRO 1028 B ILE 1029 n 3 ILE 1029 B THR 1030 n 4 THR 1030 B ALA 1031 n 5 ALA 1031 B TYR 1032 n 6 TYR 1032 B ALA 1033 n 7 ALA 1033 B GLN 1034 n 8 GLN 1034 B GLN 1035 n 9 GLN 1035 B THR 1036 n 10 THR 1036 B ARG 1037 n 11 ARG 1037 B GLY 1038 n 12 GLY 1038 B LEU 1039 n 13 LEU 1039 B LEU 1040 n 14 LEU 1040 B GLY 1041 n 15 GLY 1041 B CYS 1042 n 16 CYS 1042 B ILE 1043 n 17 ILE 1043 B ILE 1044 n 18 ILE 1044 B THR 1045 n 19 THR 1045 B SER 1046 n 20 SER 1046 B LEU 1047 n 21 LEU 1047 B THR 1048 n 22 THR 1048 B GLY 1049 n 23 GLY 1049 B ARG 1050 n 24 ARG 1050 B ASP 1051 n 25 ASP 1051 B LYS 1052 n 26 LYS 1052 B ASN 1053 n 27 ASN 1053 B GLN 1054 n 28 GLN 1054 B VAL 1055 n 29 VAL 1055 B GLU 1056 n 30 GLU 1056 B GLY 1057 n 31 GLY 1057 B GLU 1058 n 32 GLU 1058 B VAL 1059 n 33 VAL 1059 B GLN 1060 n 34 GLN 1060 B ILE 1061 n 35 ILE 1061 B VAL 1062 n 36 VAL 1062 B SER 1063 n 37 SER 1063 B THR 1064 n 38 THR 1064 B ALA 1065 n 39 ALA 1065 B THR 1066 n 40 THR 1066 B GLN 1067 n 41 GLN 1067 B THR 1068 n 42 THR 1068 B PHE 1069 n 43 PHE 1069 B LEU 1070 n 44 LEU 1070 B ALA 1071 n 45 ALA 1071 B THR 1072 n 46 THR 1072 B CYS 1073 n 47 CYS 1073 B ILE 1074 n 48 ILE 1074 B ASN 1075 n 49 ASN 1075 B GLY 1076 n 50 GLY 1076 B VAL 1077 n 51 VAL 1077 B CYS 1078 n 52 CYS 1078 B TRP 1079 n 53 TRP 1079 B THR 1080 n 54 THR 1080 B VAL 1081 n 55 VAL 1081 B TYR 1082 n 56 TYR 1082 B HIS 1083 n 57 HIS 1083 B GLY 1084 n 58 GLY 1084 B ALA 1085 n 59 ALA 1085 B GLY 1086 n 60 GLY 1086 B THR 1087 n 61 THR 1087 B ARG 1088 n 62 ARG 1088 B THR 1089 n 63 THR 1089 B ILE 1090 n 64 ILE 1090 B ALA 1091 n 65 ALA 1091 B SER 1092 n 66 SER 1092 B PRO 1093 n 67 PRO 1093 B LYS 1094 n 68 LYS 1094 B GLY 1095 n 69 GLY 1095 B PRO 1096 n 70 PRO 1096 B VAL 1097 n 71 VAL 1097 B ILE 1098 n 72 ILE 1098 B GLN 1099 n 73 GLN 1099 B MET 1100 n 74 MET 1100 B TYR 1101 n 75 TYR 1101 B THR 1102 n 76 THR 1102 B ASN 1103 n 77 ASN 1103 B VAL 1104 n 78 VAL 1104 B ASP 1105 n 79 ASP 1105 B GLN 1106 n 80 GLN 1106 B ASP 1107 n 81 ASP 1107 B LEU 1108 n 82 LEU 1108 B VAL 1109 n 83 VAL 1109 B GLY 1110 n 84 GLY 1110 B TRP 1111 n 85 TRP 1111 B PRO 1112 n 86 PRO 1112 B ALA 1113 n 87 ALA 1113 B PRO 1114 n 88 PRO 1114 B GLN 1115 n 89 GLN 1115 B GLY 1116 n 90 GLY 1116 B SER 1117 n 91 SER 1117 B ARG 1118 n 92 ARG 1118 B SER 1119 n 93 SER 1119 B LEU 1120 n 94 LEU 1120 B THR 1121 n 95 THR 1121 B PRO 1122 n 96 PRO 1122 B CYS 1123 n 97 CYS 1123 B THR 1124 n 98 THR 1124 B CYS 1125 n 99 CYS 1125 B GLY 1126 n 100 GLY 1126 B SER 1127 n 101 SER 1127 B SER 1128 n 102 SER 1128 B ASP 1129 n 103 ASP 1129 B LEU 1130 n 104 LEU 1130 B TYR 1131 n 105 TYR 1131 B LEU 1132 n 106 LEU 1132 B VAL 1133 n 107 VAL 1133 B THR 1134 n 108 THR 1134 B ARG 1135 n 109 ARG 1135 B HIS 1136 n 110 HIS 1136 B ALA 1137 n 111 ALA 1137 B ASP 1138 n 112 ASP 1138 B VAL 1139 n 113 VAL 1139 B ILE 1140 n 114 ILE 1140 B PRO 1141 n 115 PRO 1141 B VAL 1142 n 116 VAL 1142 B ARG 1143 n 117 ARG 1143 B ARG 1144 n 118 ARG 1144 B ARG 1145 n 119 ARG 1145 B GLY 1146 n 120 GLY 1146 B ASP 1147 n 121 ASP 1147 B SER 1148 n 122 SER 1148 B ARG 1149 n 123 ARG 1149 B GLY 1150 n 124 GLY 1150 B SER 1151 n 125 SER 1151 B LEU 1152 n 126 LEU 1152 B LEU 1153 n 127 LEU 1153 B SER 1154 n 128 SER 1154 B PRO 1155 n 129 PRO 1155 B ARG 1156 n 130 ARG 1156 B PRO 1157 n 131 PRO 1157 B ILE 1158 n 132 ILE 1158 B SER 1159 n 133 SER 1159 B TYR 1160 n 134 TYR 1160 B LEU 1161 n 135 LEU 1161 B LYS 1162 n 136 LYS 1162 B GLY 1163 n 137 GLY 1163 B SER 1164 n 138 SER 1164 B SER 1165 n 139 SER 1165 B GLY 1166 n 140 GLY 1166 B GLY 1167 n 141 GLY 1167 B PRO 1168 n 142 PRO 1168 B LEU 1169 n 143 LEU 1169 B LEU 1170 n 144 LEU 1170 B CYS 1171 n 145 CYS 1171 B PRO 1172 n 146 PRO 1172 B ALA 1173 n 147 ALA 1173 B GLY 1174 n 148 GLY 1174 B HIS 1175 n 149 HIS 1175 B ALA 1176 n 150 ALA 1176 B VAL 1177 n 151 VAL 1177 B GLY 1178 n 152 GLY 1178 B LEU 1179 n 153 LEU 1179 B PHE 1180 n 154 PHE 1180 B ARG 1181 n 155 ARG 1181 B ALA 1182 n 156 ALA 1182 B ALA 1183 n 157 ALA 1183 B VAL 1184 n 158 VAL 1184 B CYS 1185 n 159 CYS 1185 B THR 1186 n 160 THR 1186 B ARG 1187 n 161 ARG 1187 B GLY 1188 n 162 GLY 1188 B VAL 1189 n 163 VAL 1189 B ALA 1190 n 164 ALA 1190 B LYS 1191 n 165 LYS 1191 B ALA 1192 n 166 ALA 1192 B VAL 1193 n 167 VAL 1193 B ASP 1194 n 168 ASP 1194 B PHE 1195 n 169 PHE 1195 B ILE 1196 n 170 ILE 1196 B PRO 1197 n 171 PRO 1197 B VAL 1198 n 172 VAL 1198 B GLU 1199 n 173 GLU 1199 B ASN 1200 n 174 ASN 1200 B LEU 1201 n 175 LEU 1201 B GLU 1202 n 176 GLU 1202 B THR 1203 n 177 THR 1203 B THR 1204 n 178 THR 1204 B MET 1205 n 179 MET 1205 B ARG 1206 n 180 ARG 1206 B SER 1207 n 181 SER 1207 B n 1 20 C GLY 21 n 2 GLY 21 C SER 22 n 3 SER 22 C VAL 23 n 4 VAL 23 C VAL 24 n 5 VAL 24 C ILE 25 n 6 ILE 25 C VAL 26 n 7 VAL 26 C GLY 27 n 8 GLY 27 C ARG 28 n 9 ARG 28 C ILE 29 n 10 ILE 29 C VAL 30 n 11 VAL 30 C LEU 31 n 12 LEU 31 C SER 32 n 13 SER 32 C GLY 33 n 14 GLY 33 C LYS 34 n 15 LYS 34 C PRO 35 n 16 PRO 35 C ALA 36 n 17 ALA 36 C n 18 37 C n 19 38 C n 20 39 C n 21 40 C LYS 20 n 1 LYS 20 D GLY 21 n 2 GLY 21 D SER 22 n 3 SER 22 D VAL 23 n 4 VAL 23 D VAL 24 n 5 VAL 24 D ILE 25 n 6 ILE 25 D VAL 26 n 7 VAL 26 D GLY 27 n 8 GLY 27 D ARG 28 n 9 ARG 28 D ILE 29 n 10 ILE 29 D VAL 30 n 11 VAL 30 D LEU 31 n 12 LEU 31 D SER 32 n 13 SER 32 D GLY 33 n 14 GLY 33 D LYS 34 n 15 LYS 34 D PRO 35 n 16 PRO 35 D ALA 36 n 17 ALA 36 D ILE 37 n 18 ILE 37 D ILE 38 n 19 ILE 38 D PRO 39 n 20 PRO 39 D ALA 40 n 21 ALA 40 D 0.214 0.211 0.267 712 5.000 author_defined_assembly 2 dimeric author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 89 A N THR 63 C O VAL 23 C O VAL 4 C O ILE 29 C O ILE 10 A N VAL 59 A N VAL 33 A N GLN 60 A N GLN 34 A O ALA 71 A O ALA 45 A N THR 72 A N THR 46 A O TRP 79 A O TRP 53 A N CYS 78 A N CYS 52 A O TRP 111 A O TRP 85 A O LEU 108 A O LEU 82 A N ASN 103 A N ASN 77 A N THR 89 A N THR 63 C O VAL 23 C O VAL 4 C N VAL 30 C N VAL 11 D O ALA 36 D O ALA 17 A N LEU 132 A N LEU 106 A O ILE 140 A O ILE 114 A N ARG 145 A N ARG 119 A O ARG 149 A O ARG 123 A N GLY 150 A N GLY 124 A O VAL 193 A O VAL 167 A O ASP 194 A O ASP 168 A N ALA 182 A N ALA 156 A O VAL 177 A O VAL 151 A N LEU 169 A N LEU 143 A O LEU 170 A O LEU 144 A N TYR 131 A N TYR 105 B N TYR 1032 B N TYR 6 D O VAL 30 D O VAL 11 D O VAL 26 D O VAL 7 B N ILE 1061 B N ILE 35 B N VAL 1062 B N VAL 36 B O PHE 1069 B O PHE 43 B N ILE 1074 B N ILE 48 B O VAL 1077 B O VAL 51 B N CYS 1078 B N CYS 52 B O TRP 1111 B O TRP 85 B O LEU 1108 B O LEU 82 B N ASN 1103 B N ASN 77 B N LEU 1130 B N LEU 104 B O VAL 1142 B O VAL 116 B N ARG 1143 B N ARG 117 B O SER 1151 B O SER 125 B N GLY 1150 B N GLY 124 B O VAL 1193 B O VAL 167 B O ALA 1192 B O ALA 166 B N VAL 1184 B N VAL 158 B O VAL 1177 B O VAL 151 B N LEU 1169 B N LEU 143 B O LEU 1170 B O LEU 144 B N TYR 1131 B N TYR 105 1 A CG LYS 162 A CG LYS 136 1 Y 1 A CD LYS 162 A CD LYS 136 1 Y 1 A CE LYS 162 A CE LYS 136 1 Y 1 A NZ LYS 162 A NZ LYS 136 1 Y 1 B CG GLN 1054 B CG GLN 28 1 Y 1 B CD GLN 1054 B CD GLN 28 1 Y 1 B OE1 GLN 1054 B OE1 GLN 28 1 Y 1 B NE2 GLN 1054 B NE2 GLN 28 1 Y 1 B CG LYS 1162 B CG LYS 136 1 Y 1 B CD LYS 1162 B CD LYS 136 1 Y 1 B CE LYS 1162 B CE LYS 136 1 Y 1 B NZ LYS 1162 B NZ LYS 136 1 Y 1 B CG LYS 1191 B CG LYS 165 1 Y 1 B CD LYS 1191 B CD LYS 165 1 Y 1 B CE LYS 1191 B CE LYS 165 1 Y 1 B NZ LYS 1191 B NZ LYS 165 1 Y 1 B CG GLU 1202 B CG GLU 176 1 Y 1 B CD GLU 1202 B CD GLU 176 1 Y 1 B OE1 GLU 1202 B OE1 GLU 176 1 Y 1 B OE2 GLU 1202 B OE2 GLU 176 1 Y 1 D CG LYS 34 D CG LYS 15 1 Y 1 D CD LYS 34 D CD LYS 15 1 Y 1 D CE LYS 34 D CE LYS 15 1 Y 1 D NZ LYS 34 D NZ LYS 15 1 Y 1 A ALA 27 A ALA 1 1 Y 1 A PRO 28 A PRO 2 1 Y 1 A ILE 29 A ILE 3 1 Y 1 A THR 30 A THR 4 1 Y 1 A ALA 31 A ALA 5 1 Y 1 A TYR 32 A TYR 6 1 Y 1 A ALA 33 A ALA 7 1 Y 1 A GLN 34 A GLN 8 1 Y 1 A GLN 35 A GLN 9 1 Y 1 A THR 36 A THR 10 1 Y 1 A ARG 37 A ARG 11 1 Y 1 A GLY 38 A GLY 12 1 Y 1 A LEU 39 A LEU 13 1 Y 1 A LEU 40 A LEU 14 1 Y 1 A GLY 41 A GLY 15 1 Y 1 A CYS 42 A CYS 16 1 Y 1 A ILE 43 A ILE 17 1 Y 1 A ILE 44 A ILE 18 1 Y 1 A THR 45 A THR 19 1 Y 1 A SER 46 A SER 20 1 Y 1 A LEU 47 A LEU 21 1 Y 1 A THR 48 A THR 22 1 Y 1 A GLY 49 A GLY 23 1 Y 1 A ARG 50 A ARG 24 1 Y 1 A ASP 51 A ASP 25 1 Y 1 A LYS 52 A LYS 26 1 Y 1 A ASN 53 A ASN 27 1 Y 1 A GLN 54 A GLN 28 1 Y 1 A ARG 206 A ARG 180 1 Y 1 A SER 207 A SER 181 1 Y 1 C LYS 20 C LYS 1 1 Y 1 C ILE 37 C ILE 18 1 Y 1 C ILE 38 C ILE 19 1 Y 1 C PRO 39 C PRO 20 1 Y 1 C ALA 40 C ALA 21 1 Y 1 B C36 GG4 1208 PLANAR 1 B B OG C26 SER GG4 1165 1208 1.27 1 B B OG C32 SER GG4 1165 1208 1.92 1 A PHE 69 -144.25 -157.82 1 A SER 148 -145.30 31.06 1 B PHE 1069 -164.67 -145.89 1 B ASN 1075 36.98 51.37 1 B HIS 1083 -69.24 9.62 1 B THR 1124 -142.25 38.37 1 B ARG 1187 55.26 16.37 protein_rep.param protein.top water_rep.param water_rep.top ion.param ion.top 49.100 0.270 1.120 0.000 0.270 0.000 -0.550 0.267 0.010 0.210 0.213 2.900 19.960 709 14174 14133 5.000 86.300 RANDOM 4452504.000 0.000 1 RESTRAINED THROUGHOUT 2.00 FOURIER SYNTHESIS FLAT MODEL 23.408 0.317 0.440 0.350 5.000 0.580 0.560 2.900 19.960 0 2740 52 0 2688 0.007 1.000 20.800 0.780 1.280 1.500 2.320 2.000 1.640 2.000 2.670 2.500 0.379 0.037 0.323 3.080 107 1901 2008 6 5.300 74.500 49.500 2.9 20.0 2P59 14133 1 2.9 3.08 refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns.csb.yale.edu/v1.1/ CNS package data extraction PDB sw-help@rcsb.rutgers.edu April. 3, 2006 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 2.000 data collection CrystalClear data reduction DENZO data scaling SCALEPACK refinement CNX 2005 NS3 Crystal Structure of Hepatitis C Virus NS3.4A protease 1 N N 1 N N 2 N N 2 N N 3 N N A TYR 82 A TYR 56 HELX_P A GLY 86 A GLY 60 1 1 5 A VAL 104 A VAL 78 HELX_P A GLN 106 A GLN 80 5 2 3 A ILE 158 A ILE 132 HELX_P A LYS 162 A LYS 136 1 3 5 A VAL 198 A VAL 172 HELX_P A MET 205 A MET 179 1 4 8 B GLY 1038 B GLY 12 HELX_P B GLY 1049 B GLY 23 1 5 12 B TYR 1082 B TYR 56 HELX_P B GLY 1086 B GLY 60 1 6 5 B ILE 1158 B ILE 132 HELX_P B LYS 1162 B LYS 136 1 7 5 B VAL 1198 B VAL 172 HELX_P B SER 1207 B SER 181 1 8 10 disulf 2.927 A CYS 123 A SG CYS 97 1_555 A CYS 125 A SG CYS 99 1_555 disulf 2.551 A CYS 125 A SG CYS 99 1_555 A CYS 171 A SG CYS 145 1_555 disulf 2.829 B CYS 1123 B SG CYS 97 1_555 B CYS 1125 B SG CYS 99 1_555 VIRAL PROTEIN HCV protease, VIRAL PROTEIN A1Z093_9HEPC UNP 1 1 A1Z093 APITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQ DLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCT RGVAKAVDFIPVENLGTTMRS 2P59 PDB 2 2P59 1 181 2P59 27 207 A1Z093 A 1 1 181 1 181 2P59 1027 1207 A1Z093 B 1 1 181 20 40 2P59 20 40 2P59 C 2 1 21 20 40 2P59 20 40 2P59 D 2 1 21 1 GLY CONFLICT GLU 202 2P59 A A1Z093 UNP 176 176 2 GLY CONFLICT GLU 1202 2P59 B A1Z093 UNP 176 176 7 3 7 7 7 parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 89 A THR 63 A ILE 90 A ILE 64 C SER 22 C SER 3 C VAL 30 C VAL 11 A VAL 59 A VAL 33 A SER 63 A SER 37 A THR 68 A THR 42 A ILE 74 A ILE 48 A VAL 77 A VAL 51 A VAL 81 A VAL 55 A LEU 108 A LEU 82 A PRO 112 A PRO 86 A TYR 101 A TYR 75 A ASN 103 A ASN 77 A THR 89 A THR 63 A ILE 90 A ILE 64 C SER 22 C SER 3 C VAL 30 C VAL 11 D ALA 36 D ALA 17 D ILE 37 D ILE 18 A ASP 129 A ASP 103 A VAL 133 A VAL 107 A VAL 139 A VAL 113 A GLY 146 A GLY 120 A ARG 149 A ARG 123 A PRO 157 A PRO 131 A VAL 189 A VAL 163 A PRO 197 A PRO 171 A ALA 176 A ALA 150 A THR 186 A THR 160 A PRO 168 A PRO 142 A LEU 170 A LEU 144 A ASP 129 A ASP 103 A VAL 133 A VAL 107 B TYR 1032 B TYR 6 B GLN 1035 B GLN 9 D VAL 24 D VAL 5 D VAL 30 D VAL 11 B VAL 1059 B VAL 33 B SER 1063 B SER 37 B THR 1068 B THR 42 B ILE 1074 B ILE 48 B VAL 1077 B VAL 51 B VAL 1081 B VAL 55 B LEU 1108 B LEU 82 B PRO 1112 B PRO 86 B TYR 1101 B TYR 75 B ASN 1103 B ASN 77 B ASP 1129 B ASP 103 B VAL 1133 B VAL 107 B VAL 1139 B VAL 113 B ARG 1144 B ARG 118 B GLY 1150 B GLY 124 B PRO 1157 B PRO 131 B VAL 1189 B VAL 163 B PRO 1197 B PRO 171 B ALA 1176 B ALA 150 B VAL 1184 B VAL 158 B PRO 1168 B PRO 142 B LEU 1170 B LEU 144 B ASP 1129 B ASP 103 B VAL 1133 B VAL 107 BINDING SITE FOR RESIDUE GG4 B 1208 Software 13 B GLN 1067 B GLN 41 13 1_555 B THR 1068 B THR 42 13 1_555 B HIS 1083 B HIS 57 13 1_555 B LYS 1162 B LYS 136 13 1_555 B GLY 1163 B GLY 137 13 1_555 B SER 1164 B SER 138 13 1_555 B SER 1165 B SER 139 13 1_555 B ARG 1181 B ARG 155 13 1_555 B ALA 1182 B ALA 156 13 1_555 B ALA 1183 B ALA 157 13 1_555 B VAL 1184 B VAL 158 13 1_555 B CYS 1185 B CYS 159 13 1_555 B ASP 1194 B ASP 168 13 1_555 155 H 3 2