.017241 .000000 .000000 .000000 .015456 .000000 .000000 .000000 .005627 .00000 .00000 .00000 Julien, J.P. Bryson, S. Pai, E.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 58.000 64.700 177.700 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 384 377 392 10.1016/j.jmb.2008.09.024 18824005 Structural details of HIV-1 recognition by the broadly neutralizing monoclonal antibody 2F5: epitope conformation, antigen-recognition loop mobility, and anion-binding site. 2008 1.000000 .000000 .000000 .000000 1.000000 .000000 .000000 .000000 1.000000 .00000 .00000 .00000 110 1 IMAGE PLATE 2006-07-01 RIGAKU RAXIS IV SINGLE WAVELENGTH M x-ray 1 1.54 1.0 1.54 ROTATING ANODE RIGAKU RU300 23363.844 nmAb 2F5, light chain 1 nat polymer 24985.436 nmAb 2F5, heavy chain 1 nat polymer 1617.820 gp41 peptide 1 syn polymer 18.015 water 267 nat water no no ALQLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRP EDFATYYCQQLHFYPHTFGGGTRVDVRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYECEVTHQGLSSPVTKSFNRGEC ALQLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRP EDFATYYCQQLHFYPHTFGGGTRVDVRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYECEVTHQGLSSPVTKSFNRGEC A polypeptide(L) no no RITLKESGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQV VLVMTRVSPVDTATYFCAHRRGPTTLFGVPIARGPVNAMDVWGQGITVTISSTSTKGPSVFPLAPSSKSTAGGTAALGCL VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYTCNVNHKPSNTKVDKRVEPKSC RITLKESGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQV VLVMTRVSPVDTATYFCAHRRGPTTLFGVPIARGPVNAMDVWGQGITVTISSTSTKGPSVFPLAPSSKSTAGGTAALGCL VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYTCNVNHKPSNTKVDKRVEPKSC B polypeptide(L) no no ELLELDKWASLNW ELLELDKWASLNW C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens human Homo sample 9606 Homo sapiens 1 3.34 63.13 VAPOR DIFFUSION, HANGING DROP 5.6 0.1M NaCitrate, 20% 2-propanol, 16-20% PEG 4K, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 repository Initial release Version format compliance Version format compliance 1 0 2007-05-15 1 1 2008-05-01 1 2 2011-07-13 RCSB Y RCSB 2007-03-22 REL REL HOH water synthetic peptide sample WAT 6 4 HOH HOH 215 A WAT 7 4 HOH HOH 216 A WAT 10 4 HOH HOH 217 A WAT 13 4 HOH HOH 218 A WAT 14 4 HOH HOH 219 A WAT 18 4 HOH HOH 220 A WAT 23 4 HOH HOH 221 A WAT 24 4 HOH HOH 222 A WAT 25 4 HOH HOH 223 A WAT 28 4 HOH HOH 224 A WAT 34 4 HOH HOH 225 A WAT 36 4 HOH HOH 226 A WAT 38 4 HOH HOH 227 A WAT 39 4 HOH HOH 228 A WAT 44 4 HOH HOH 229 A WAT 46 4 HOH HOH 230 A WAT 50 4 HOH HOH 231 A WAT 51 4 HOH HOH 232 A WAT 52 4 HOH HOH 233 A WAT 54 4 HOH HOH 234 A WAT 55 4 HOH HOH 235 A WAT 56 4 HOH HOH 236 A WAT 61 4 HOH HOH 237 A WAT 64 4 HOH HOH 238 A WAT 65 4 HOH HOH 239 A WAT 69 4 HOH HOH 240 A WAT 70 4 HOH HOH 241 A WAT 71 4 HOH HOH 242 A WAT 72 4 HOH HOH 243 A WAT 73 4 HOH HOH 244 A WAT 78 4 HOH HOH 245 A WAT 79 4 HOH HOH 246 A WAT 80 4 HOH HOH 247 A WAT 81 4 HOH HOH 248 A WAT 83 4 HOH HOH 249 A WAT 85 4 HOH HOH 250 A WAT 88 4 HOH HOH 251 A WAT 91 4 HOH HOH 252 A WAT 92 4 HOH HOH 253 A WAT 94 4 HOH HOH 254 A WAT 97 4 HOH HOH 255 A WAT 98 4 HOH HOH 256 A WAT 99 4 HOH HOH 257 A WAT 100 4 HOH HOH 258 A WAT 101 4 HOH HOH 259 A WAT 103 4 HOH HOH 260 A WAT 110 4 HOH HOH 261 A WAT 111 4 HOH HOH 262 A WAT 114 4 HOH HOH 263 A WAT 116 4 HOH HOH 264 A WAT 120 4 HOH HOH 265 A WAT 122 4 HOH HOH 266 A WAT 123 4 HOH HOH 267 A WAT 130 4 HOH HOH 268 A WAT 131 4 HOH HOH 269 A WAT 133 4 HOH HOH 270 A WAT 135 4 HOH HOH 271 A WAT 137 4 HOH HOH 272 A WAT 139 4 HOH HOH 273 A WAT 140 4 HOH HOH 274 A WAT 141 4 HOH HOH 275 A WAT 143 4 HOH HOH 276 A WAT 144 4 HOH HOH 277 A WAT 145 4 HOH HOH 278 A WAT 146 4 HOH HOH 279 A WAT 149 4 HOH HOH 280 A WAT 151 4 HOH HOH 281 A WAT 155 4 HOH HOH 282 A WAT 156 4 HOH HOH 283 A WAT 160 4 HOH HOH 284 A WAT 161 4 HOH HOH 285 A WAT 163 4 HOH HOH 286 A WAT 164 4 HOH HOH 287 A WAT 165 4 HOH HOH 288 A WAT 170 4 HOH HOH 289 A WAT 175 4 HOH HOH 290 A WAT 176 4 HOH HOH 291 A WAT 177 4 HOH HOH 292 A WAT 178 4 HOH HOH 293 A WAT 179 4 HOH HOH 294 A WAT 182 4 HOH HOH 295 A WAT 184 4 HOH HOH 296 A WAT 185 4 HOH HOH 297 A WAT 187 4 HOH HOH 298 A WAT 192 4 HOH HOH 299 A WAT 194 4 HOH HOH 300 A WAT 195 4 HOH HOH 301 A WAT 196 4 HOH HOH 302 A WAT 198 4 HOH HOH 303 A WAT 201 4 HOH HOH 304 A WAT 203 4 HOH HOH 305 A WAT 204 4 HOH HOH 306 A WAT 206 4 HOH HOH 307 A WAT 207 4 HOH HOH 308 A WAT 208 4 HOH HOH 309 A WAT 210 4 HOH HOH 310 A WAT 212 4 HOH HOH 311 A WAT 217 4 HOH HOH 312 A WAT 222 4 HOH HOH 313 A WAT 225 4 HOH HOH 314 A WAT 229 4 HOH HOH 315 A WAT 231 4 HOH HOH 316 A WAT 234 4 HOH HOH 317 A WAT 237 4 HOH HOH 318 A WAT 238 4 HOH HOH 319 A WAT 239 4 HOH HOH 320 A WAT 244 4 HOH HOH 321 A WAT 246 4 HOH HOH 322 A WAT 247 4 HOH HOH 323 A WAT 250 4 HOH HOH 324 A WAT 251 4 HOH HOH 325 A WAT 253 4 HOH HOH 326 A WAT 254 4 HOH HOH 327 A WAT 257 4 HOH HOH 328 A WAT 259 4 HOH HOH 329 A WAT 260 4 HOH HOH 330 A WAT 261 4 HOH HOH 331 A WAT 263 4 HOH HOH 332 A WAT 265 4 HOH HOH 333 A WAT 269 4 HOH HOH 334 A WAT 271 4 HOH HOH 335 A WAT 272 4 HOH HOH 336 A WAT 273 4 HOH HOH 337 A WAT 275 4 HOH HOH 338 A WAT 276 4 HOH HOH 339 A WAT 278 4 HOH HOH 340 A WAT 279 4 HOH HOH 341 A WAT 280 4 HOH HOH 342 A WAT 282 4 HOH HOH 343 A WAT 285 4 HOH HOH 344 A WAT 1 4 HOH HOH 217 B WAT 2 4 HOH HOH 218 B WAT 3 4 HOH HOH 219 B WAT 4 4 HOH HOH 220 B WAT 5 4 HOH HOH 221 B WAT 8 4 HOH HOH 222 B WAT 9 4 HOH HOH 223 B WAT 11 4 HOH HOH 224 B WAT 12 4 HOH HOH 225 B WAT 15 4 HOH HOH 226 B WAT 16 4 HOH HOH 227 B WAT 17 4 HOH HOH 228 B WAT 19 4 HOH HOH 229 B WAT 20 4 HOH HOH 230 B WAT 21 4 HOH HOH 231 B WAT 22 4 HOH HOH 232 B WAT 26 4 HOH HOH 233 B WAT 27 4 HOH HOH 234 B WAT 29 4 HOH HOH 235 B WAT 30 4 HOH HOH 236 B WAT 31 4 HOH HOH 237 B WAT 32 4 HOH HOH 238 B WAT 33 4 HOH HOH 239 B WAT 35 4 HOH HOH 240 B WAT 40 4 HOH HOH 241 B WAT 41 4 HOH HOH 242 B WAT 42 4 HOH HOH 243 B WAT 43 4 HOH HOH 244 B WAT 45 4 HOH HOH 245 B WAT 49 4 HOH HOH 246 B WAT 53 4 HOH HOH 247 B WAT 57 4 HOH HOH 248 B WAT 58 4 HOH HOH 249 B WAT 59 4 HOH HOH 250 B WAT 60 4 HOH HOH 251 B WAT 62 4 HOH HOH 252 B WAT 63 4 HOH HOH 253 B WAT 66 4 HOH HOH 254 B WAT 67 4 HOH HOH 255 B WAT 68 4 HOH HOH 256 B WAT 75 4 HOH HOH 257 B WAT 77 4 HOH HOH 258 B WAT 84 4 HOH HOH 259 B WAT 86 4 HOH HOH 260 B WAT 87 4 HOH HOH 261 B WAT 89 4 HOH HOH 262 B WAT 90 4 HOH HOH 263 B WAT 93 4 HOH HOH 264 B WAT 96 4 HOH HOH 265 B WAT 102 4 HOH HOH 266 B WAT 105 4 HOH HOH 267 B WAT 106 4 HOH HOH 268 B WAT 107 4 HOH HOH 269 B WAT 108 4 HOH HOH 270 B WAT 112 4 HOH HOH 271 B WAT 115 4 HOH HOH 272 B WAT 117 4 HOH HOH 273 B WAT 118 4 HOH HOH 274 B WAT 119 4 HOH HOH 275 B WAT 124 4 HOH HOH 276 B WAT 125 4 HOH HOH 277 B WAT 126 4 HOH HOH 278 B WAT 127 4 HOH HOH 279 B WAT 128 4 HOH HOH 280 B WAT 132 4 HOH HOH 281 B WAT 136 4 HOH HOH 282 B WAT 138 4 HOH HOH 283 B WAT 142 4 HOH HOH 284 B WAT 148 4 HOH HOH 285 B WAT 150 4 HOH HOH 286 B WAT 152 4 HOH HOH 287 B WAT 153 4 HOH HOH 288 B WAT 154 4 HOH HOH 289 B WAT 157 4 HOH HOH 290 B WAT 158 4 HOH HOH 291 B WAT 159 4 HOH HOH 292 B WAT 162 4 HOH HOH 293 B WAT 166 4 HOH HOH 294 B WAT 168 4 HOH HOH 295 B WAT 171 4 HOH HOH 296 B WAT 172 4 HOH HOH 297 B WAT 173 4 HOH HOH 298 B WAT 174 4 HOH HOH 299 B WAT 180 4 HOH HOH 300 B WAT 181 4 HOH HOH 301 B WAT 183 4 HOH HOH 302 B WAT 186 4 HOH HOH 303 B WAT 188 4 HOH HOH 304 B WAT 189 4 HOH HOH 305 B WAT 190 4 HOH HOH 306 B WAT 193 4 HOH HOH 307 B WAT 197 4 HOH HOH 308 B WAT 199 4 HOH HOH 309 B WAT 200 4 HOH HOH 310 B WAT 202 4 HOH HOH 311 B WAT 205 4 HOH HOH 312 B WAT 209 4 HOH HOH 313 B WAT 211 4 HOH HOH 314 B WAT 213 4 HOH HOH 315 B WAT 214 4 HOH HOH 316 B WAT 215 4 HOH HOH 317 B WAT 216 4 HOH HOH 318 B WAT 218 4 HOH HOH 319 B WAT 219 4 HOH HOH 320 B WAT 221 4 HOH HOH 321 B WAT 223 4 HOH HOH 322 B WAT 224 4 HOH HOH 323 B WAT 226 4 HOH HOH 324 B WAT 227 4 HOH HOH 325 B WAT 228 4 HOH HOH 326 B WAT 230 4 HOH HOH 327 B WAT 232 4 HOH HOH 328 B WAT 233 4 HOH HOH 329 B WAT 236 4 HOH HOH 330 B WAT 240 4 HOH HOH 331 B WAT 241 4 HOH HOH 332 B WAT 242 4 HOH HOH 333 B WAT 248 4 HOH HOH 334 B WAT 249 4 HOH HOH 335 B WAT 252 4 HOH HOH 336 B WAT 255 4 HOH HOH 337 B WAT 256 4 HOH HOH 338 B WAT 262 4 HOH HOH 339 B WAT 264 4 HOH HOH 340 B WAT 266 4 HOH HOH 341 B WAT 267 4 HOH HOH 342 B WAT 270 4 HOH HOH 343 B WAT 274 4 HOH HOH 344 B WAT 277 4 HOH HOH 345 B WAT 281 4 HOH HOH 346 B WAT 283 4 HOH HOH 347 B WAT 47 4 HOH HOH 47 C WAT 74 4 HOH HOH 74 C WAT 147 4 HOH HOH 147 C WAT 167 4 HOH HOH 167 C WAT 169 4 HOH HOH 169 C WAT 258 4 HOH HOH 258 C ALA 1 n 1 ALA 1 A LEU 2 n 2 LEU 2 A GLN 3 n 3 GLN 3 A LEU 4 n 4 LEU 4 A THR 5 n 5 THR 5 A GLN 6 n 6 GLN 6 A SER 7 n 7 SER 7 A PRO 8 n 8 PRO 8 A SER 9 n 9 SER 9 A SER 10 n 10 SER 10 A LEU 11 n 11 LEU 11 A SER 12 n 12 SER 12 A ALA 13 n 13 ALA 13 A SER 14 n 14 SER 14 A VAL 15 n 15 VAL 15 A GLY 16 n 16 GLY 16 A ASP 17 n 17 ASP 17 A ARG 18 n 18 ARG 18 A ILE 19 n 19 ILE 19 A THR 20 n 20 THR 20 A ILE 21 n 21 ILE 21 A THR 22 n 22 THR 22 A CYS 23 n 23 CYS 23 A ARG 24 n 24 ARG 24 A ALA 25 n 25 ALA 25 A SER 26 n 26 SER 26 A GLN 27 n 27 GLN 27 A GLY 28 n 28 GLY 28 A VAL 29 n 29 VAL 29 A THR 30 n 30 THR 30 A SER 31 n 31 SER 31 A ALA 32 n 32 ALA 32 A LEU 33 n 33 LEU 33 A ALA 34 n 34 ALA 34 A TRP 35 n 35 TRP 35 A TYR 36 n 36 TYR 36 A ARG 37 n 37 ARG 37 A GLN 38 n 38 GLN 38 A LYS 39 n 39 LYS 39 A PRO 40 n 40 PRO 40 A GLY 41 n 41 GLY 41 A SER 42 n 42 SER 42 A PRO 43 n 43 PRO 43 A PRO 44 n 44 PRO 44 A GLN 45 n 45 GLN 45 A LEU 46 n 46 LEU 46 A LEU 47 n 47 LEU 47 A ILE 48 n 48 ILE 48 A TYR 49 n 49 TYR 49 A ASP 50 n 50 ASP 50 A ALA 51 n 51 ALA 51 A SER 52 n 52 SER 52 A SER 53 n 53 SER 53 A LEU 54 n 54 LEU 54 A GLU 55 n 55 GLU 55 A SER 56 n 56 SER 56 A GLY 57 n 57 GLY 57 A VAL 58 n 58 VAL 58 A PRO 59 n 59 PRO 59 A SER 60 n 60 SER 60 A ARG 61 n 61 ARG 61 A PHE 62 n 62 PHE 62 A SER 63 n 63 SER 63 A GLY 64 n 64 GLY 64 A SER 65 n 65 SER 65 A GLY 66 n 66 GLY 66 A SER 67 n 67 SER 67 A GLY 68 n 68 GLY 68 A THR 69 n 69 THR 69 A GLU 70 n 70 GLU 70 A PHE 71 n 71 PHE 71 A THR 72 n 72 THR 72 A LEU 73 n 73 LEU 73 A THR 74 n 74 THR 74 A ILE 75 n 75 ILE 75 A SER 76 n 76 SER 76 A THR 77 n 77 THR 77 A LEU 78 n 78 LEU 78 A ARG 79 n 79 ARG 79 A PRO 80 n 80 PRO 80 A GLU 81 n 81 GLU 81 A ASP 82 n 82 ASP 82 A PHE 83 n 83 PHE 83 A ALA 84 n 84 ALA 84 A THR 85 n 85 THR 85 A TYR 86 n 86 TYR 86 A TYR 87 n 87 TYR 87 A CYS 88 n 88 CYS 88 A GLN 89 n 89 GLN 89 A GLN 90 n 90 GLN 90 A LEU 91 n 91 LEU 91 A HIS 92 n 92 HIS 92 A PHE 93 n 93 PHE 93 A TYR 94 n 94 TYR 94 A PRO 95 n 95 PRO 95 A HIS 96 n 96 HIS 96 A THR 97 n 97 THR 97 A PHE 98 n 98 PHE 98 A GLY 99 n 99 GLY 99 A GLY 100 n 100 GLY 100 A GLY 101 n 101 GLY 101 A THR 102 n 102 THR 102 A ARG 103 n 103 ARG 103 A VAL 104 n 104 VAL 104 A ASP 105 n 105 ASP 105 A VAL 106 n 106 VAL 106 A ARG 107 n 107 ARG 107 A ARG 108 n 108 ARG 108 A THR 109 n 109 THR 109 A VAL 110 n 110 VAL 110 A ALA 111 n 111 ALA 111 A ALA 112 n 112 ALA 112 A PRO 113 n 113 PRO 113 A SER 114 n 114 SER 114 A VAL 115 n 115 VAL 115 A PHE 116 n 116 PHE 116 A ILE 117 n 117 ILE 117 A PHE 118 n 118 PHE 118 A PRO 119 n 119 PRO 119 A PRO 120 n 120 PRO 120 A SER 121 n 121 SER 121 A ASP 122 n 122 ASP 122 A GLU 123 n 123 GLU 123 A GLN 124 n 124 GLN 124 A LEU 125 n 125 LEU 125 A LYS 126 n 126 LYS 126 A SER 127 n 127 SER 127 A GLY 128 n 128 GLY 128 A THR 129 n 129 THR 129 A ALA 130 n 130 ALA 130 A SER 131 n 131 SER 131 A VAL 132 n 132 VAL 132 A VAL 133 n 133 VAL 133 A CYS 134 n 134 CYS 134 A LEU 135 n 135 LEU 135 A LEU 136 n 136 LEU 136 A ASN 137 n 137 ASN 137 A ASN 138 n 138 ASN 138 A PHE 139 n 139 PHE 139 A TYR 140 n 140 TYR 140 A PRO 141 n 141 PRO 141 A ARG 142 n 142 ARG 142 A GLU 143 n 143 GLU 143 A ALA 144 n 144 ALA 144 A LYS 145 n 145 LYS 145 A VAL 146 n 146 VAL 146 A GLN 147 n 147 GLN 147 A TRP 148 n 148 TRP 148 A LYS 149 n 149 LYS 149 A VAL 150 n 150 VAL 150 A ASP 151 n 151 ASP 151 A ASN 152 n 152 ASN 152 A ALA 153 n 153 ALA 153 A LEU 154 n 154 LEU 154 A GLN 155 n 155 GLN 155 A SER 156 n 156 SER 156 A GLY 157 n 157 GLY 157 A ASN 158 n 158 ASN 158 A SER 159 n 159 SER 159 A GLN 160 n 160 GLN 160 A GLU 161 n 161 GLU 161 A SER 162 n 162 SER 162 A VAL 163 n 163 VAL 163 A THR 164 n 164 THR 164 A GLU 165 n 165 GLU 165 A GLN 166 n 166 GLN 166 A ASP 167 n 167 ASP 167 A SER 168 n 168 SER 168 A LYS 169 n 169 LYS 169 A ASP 170 n 170 ASP 170 A SER 171 n 171 SER 171 A THR 172 n 172 THR 172 A TYR 173 n 173 TYR 173 A SER 174 n 174 SER 174 A LEU 175 n 175 LEU 175 A SER 176 n 176 SER 176 A SER 177 n 177 SER 177 A THR 178 n 178 THR 178 A LEU 179 n 179 LEU 179 A THR 180 n 180 THR 180 A LEU 181 n 181 LEU 181 A SER 182 n 182 SER 182 A LYS 183 n 183 LYS 183 A ALA 184 n 184 ALA 184 A ASP 185 n 185 ASP 185 A TYR 186 n 186 TYR 186 A GLU 187 n 187 GLU 187 A LYS 188 n 188 LYS 188 A HIS 189 n 189 HIS 189 A LYS 190 n 190 LYS 190 A VAL 191 n 191 VAL 191 A TYR 192 n 192 TYR 192 A GLU 193 n 193 GLU 193 A CYS 194 n 194 CYS 194 A GLU 195 n 195 GLU 195 A VAL 196 n 196 VAL 196 A THR 197 n 197 THR 197 A HIS 198 n 198 HIS 198 A GLN 199 n 199 GLN 199 A GLY 200 n 200 GLY 200 A LEU 201 n 201 LEU 201 A SER 202 n 202 SER 202 A SER 203 n 203 SER 203 A PRO 204 n 204 PRO 204 A VAL 205 n 205 VAL 205 A THR 206 n 206 THR 206 A LYS 207 n 207 LYS 207 A SER 208 n 208 SER 208 A PHE 209 n 209 PHE 209 A ASN 210 n 210 ASN 210 A ARG 211 n 211 ARG 211 A GLY 212 n 212 GLY 212 A GLU 213 n 213 GLU 213 A CYS 214 n 214 CYS 214 A ARG 1 n 1 ARG 1 B ILE 2 n 2 ILE 2 B THR 3 n 3 THR 3 B LEU 4 n 4 LEU 4 B LYS 5 n 5 LYS 5 B GLU 6 n 6 GLU 6 B SER 7 n 7 SER 7 B GLY 8 n 8 GLY 8 B PRO 9 n 9 PRO 9 B PRO 10 n 10 PRO 10 B LEU 11 n 11 LEU 11 B VAL 12 n 12 VAL 12 B LYS 13 n 13 LYS 13 B PRO 14 n 14 PRO 14 B THR 15 n 15 THR 15 B GLN 16 n 16 GLN 16 B THR 17 n 17 THR 17 B LEU 18 n 18 LEU 18 B THR 19 n 19 THR 19 B LEU 20 n 20 LEU 20 B THR 21 n 21 THR 21 B CYS 22 n 22 CYS 22 B SER 23 n 23 SER 23 B PHE 24 n 24 PHE 24 B SER 25 n 25 SER 25 B GLY 26 n 26 GLY 26 B PHE 27 n 27 PHE 27 B SER 28 n 28 SER 28 B LEU 29 n 29 LEU 29 B SER 30 n 30 SER 30 B ASP 31 n 31 ASP 31 B PHE 32 n 32 PHE 32 B GLY 33 n 33 GLY 33 B VAL 34 n 34 VAL 34 B GLY 35 n 35 GLY 35 B VAL 35 n 36 A VAL 35 B GLY 35 n 37 B GLY 35 B TRP 36 n 38 TRP 36 B ILE 37 n 39 ILE 37 B ARG 38 n 40 ARG 38 B GLN 39 n 41 GLN 39 B PRO 40 n 42 PRO 40 B PRO 41 n 43 PRO 41 B GLY 42 n 44 GLY 42 B LYS 43 n 45 LYS 43 B ALA 44 n 46 ALA 44 B LEU 45 n 47 LEU 45 B GLU 46 n 48 GLU 46 B TRP 47 n 49 TRP 47 B LEU 48 n 50 LEU 48 B ALA 49 n 51 ALA 49 B ILE 50 n 52 ILE 50 B ILE 51 n 53 ILE 51 B TYR 52 n 54 TYR 52 B SER 53 n 55 SER 53 B ASP 54 n 56 ASP 54 B ASP 55 n 57 ASP 55 B ASP 56 n 58 ASP 56 B LYS 57 n 59 LYS 57 B ARG 58 n 60 ARG 58 B TYR 59 n 61 TYR 59 B SER 60 n 62 SER 60 B PRO 61 n 63 PRO 61 B SER 62 n 64 SER 62 B LEU 63 n 65 LEU 63 B ASN 64 n 66 ASN 64 B THR 65 n 67 THR 65 B ARG 66 n 68 ARG 66 B LEU 67 n 69 LEU 67 B THR 68 n 70 THR 68 B ILE 69 n 71 ILE 69 B THR 70 n 72 THR 70 B LYS 71 n 73 LYS 71 B ASP 72 n 74 ASP 72 B THR 73 n 75 THR 73 B SER 74 n 76 SER 74 B LYS 75 n 77 LYS 75 B ASN 76 n 78 ASN 76 B GLN 77 n 79 GLN 77 B VAL 78 n 80 VAL 78 B VAL 79 n 81 VAL 79 B LEU 80 n 82 LEU 80 B VAL 81 n 83 VAL 81 B MET 82 n 84 MET 82 B THR 82 n 85 A THR 82 B ARG 82 n 86 B ARG 82 B VAL 82 n 87 C VAL 82 B SER 83 n 88 SER 83 B PRO 84 n 89 PRO 84 B VAL 85 n 90 VAL 85 B ASP 86 n 91 ASP 86 B THR 87 n 92 THR 87 B ALA 88 n 93 ALA 88 B THR 89 n 94 THR 89 B TYR 90 n 95 TYR 90 B PHE 91 n 96 PHE 91 B CYS 92 n 97 CYS 92 B ALA 93 n 98 ALA 93 B HIS 94 n 99 HIS 94 B ARG 95 n 100 ARG 95 B ARG 96 n 101 ARG 96 B GLY 97 n 102 GLY 97 B PRO 98 n 103 PRO 98 B THR 99 n 104 THR 99 B THR 100 n 105 THR 100 B LEU 100 n 106 A LEU 100 B PHE 100 n 107 B PHE 100 B GLY 100 n 108 C GLY 100 B VAL 100 n 109 D VAL 100 B PRO 100 n 110 E PRO 100 B ILE 100 n 111 F ILE 100 B ALA 100 n 112 G ALA 100 B ARG 100 n 113 H ARG 100 B GLY 100 n 114 I GLY 100 B PRO 100 n 115 J PRO 100 B VAL 100 n 116 K VAL 100 B ASN 100 n 117 L ASN 100 B ALA 100 n 118 M ALA 100 B MET 100 n 119 N MET 100 B ASP 101 n 120 ASP 101 B VAL 102 n 121 VAL 102 B TRP 103 n 122 TRP 103 B GLY 104 n 123 GLY 104 B GLN 105 n 124 GLN 105 B GLY 106 n 125 GLY 106 B ILE 107 n 126 ILE 107 B THR 108 n 127 THR 108 B VAL 109 n 128 VAL 109 B THR 110 n 129 THR 110 B ILE 111 n 130 ILE 111 B SER 112 n 131 SER 112 B SER 113 n 132 SER 113 B THR 114 n 133 THR 114 B SER 115 n 134 SER 115 B THR 116 n 135 THR 116 B LYS 117 n 136 LYS 117 B GLY 118 n 137 GLY 118 B PRO 119 n 138 PRO 119 B SER 120 n 139 SER 120 B VAL 121 n 140 VAL 121 B PHE 122 n 141 PHE 122 B PRO 123 n 142 PRO 123 B LEU 124 n 143 LEU 124 B ALA 125 n 144 ALA 125 B PRO 126 n 145 PRO 126 B n 146 127 B n 147 128 B n 148 129 B n 149 130 B n 150 131 B n 151 132 B n 152 133 B n 153 134 B THR 135 n 154 THR 135 B ALA 136 n 155 ALA 136 B ALA 137 n 156 ALA 137 B LEU 138 n 157 LEU 138 B GLY 139 n 158 GLY 139 B CYS 140 n 159 CYS 140 B LEU 141 n 160 LEU 141 B VAL 142 n 161 VAL 142 B LYS 143 n 162 LYS 143 B ASP 144 n 163 ASP 144 B TYR 145 n 164 TYR 145 B PHE 146 n 165 PHE 146 B PRO 147 n 166 PRO 147 B GLU 148 n 167 GLU 148 B PRO 149 n 168 PRO 149 B VAL 150 n 169 VAL 150 B THR 151 n 170 THR 151 B VAL 152 n 171 VAL 152 B SER 153 n 172 SER 153 B TRP 154 n 173 TRP 154 B ASN 155 n 174 ASN 155 B SER 156 n 175 SER 156 B GLY 157 n 176 GLY 157 B ALA 158 n 177 ALA 158 B LEU 159 n 178 LEU 159 B THR 160 n 179 THR 160 B SER 161 n 180 SER 161 B GLY 162 n 181 GLY 162 B VAL 163 n 182 VAL 163 B HIS 164 n 183 HIS 164 B THR 165 n 184 THR 165 B PHE 166 n 185 PHE 166 B PRO 167 n 186 PRO 167 B ALA 168 n 187 ALA 168 B VAL 169 n 188 VAL 169 B LEU 170 n 189 LEU 170 B GLN 171 n 190 GLN 171 B SER 172 n 191 SER 172 B SER 173 n 192 SER 173 B GLY 174 n 193 GLY 174 B LEU 175 n 194 LEU 175 B TYR 176 n 195 TYR 176 B SER 177 n 196 SER 177 B LEU 178 n 197 LEU 178 B SER 179 n 198 SER 179 B SER 180 n 199 SER 180 B VAL 181 n 200 VAL 181 B VAL 182 n 201 VAL 182 B THR 183 n 202 THR 183 B VAL 184 n 203 VAL 184 B PRO 185 n 204 PRO 185 B SER 186 n 205 SER 186 B SER 187 n 206 SER 187 B SER 188 n 207 SER 188 B LEU 189 n 208 LEU 189 B n 209 190 B n 210 191 B GLN 192 n 211 GLN 192 B THR 193 n 212 THR 193 B TYR 194 n 213 TYR 194 B THR 195 n 214 THR 195 B CYS 196 n 215 CYS 196 B ASN 197 n 216 ASN 197 B VAL 198 n 217 VAL 198 B ASN 199 n 218 ASN 199 B HIS 200 n 219 HIS 200 B LYS 201 n 220 LYS 201 B PRO 202 n 221 PRO 202 B SER 203 n 222 SER 203 B ASN 204 n 223 ASN 204 B THR 205 n 224 THR 205 B LYS 206 n 225 LYS 206 B VAL 207 n 226 VAL 207 B ASP 208 n 227 ASP 208 B LYS 209 n 228 LYS 209 B ARG 210 n 229 ARG 210 B VAL 211 n 230 VAL 211 B GLU 212 n 231 GLU 212 B PRO 213 n 232 PRO 213 B n 233 214 B n 234 215 B n 235 216 B GLU 0 n 1 GLU 0 C LEU 1 n 2 LEU 1 C LEU 2 n 3 LEU 2 C GLU 3 n 4 GLU 3 C LEU 4 n 5 LEU 4 C ASP 5 n 6 ASP 5 C LYS 6 n 7 LYS 6 C TRP 7 n 8 TRP 7 C ALA 8 n 9 ALA 8 C SER 9 n 10 SER 9 C LEU 10 n 11 LEU 10 C n 12 11 C n 13 12 C author_and_software_defined_assembly PISA 3 trimeric 4850 -26 19600 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N SER 7 A N SER 7 A O THR 22 A O THR 22 A N ILE 21 A N ILE 21 A O LEU 73 A O LEU 73 A O THR 74 A O THR 74 A N SER 63 A N SER 63 A N ALA 13 A N ALA 13 A O ASP 105 A O ASP 105 A O THR 102 A O THR 102 A N TYR 86 A N TYR 86 A O THR 85 A O THR 85 A N GLN 38 A N GLN 38 A N TRP 35 A N TRP 35 A O LEU 47 A O LEU 47 A N TYR 49 A N TYR 49 A O SER 53 A O SER 53 A N TYR 94 A N TYR 94 C O GLU 3 C O GLU 4 A N PHE 118 A N PHE 118 A O VAL 133 A O VAL 133 A N VAL 132 A N VAL 132 A O LEU 179 A O LEU 179 A O THR 178 A O THR 178 A N GLN 160 A N GLN 160 A O ALA 153 A O ALA 153 A N VAL 150 A N VAL 150 A N LYS 149 A N LYS 149 A O GLU 193 A O GLU 193 A N VAL 196 A N VAL 196 A O VAL 205 A O VAL 205 B N LYS 5 B N LYS 5 B O SER 23 B O SER 23 B N CYS 22 B N CYS 22 B O VAL 78 B O VAL 80 B O VAL 79 B O VAL 81 B N THR 70 B N THR 72 B N VAL 12 B N VAL 12 B O THR 110 B O THR 129 B O ILE 107 B O ILE 126 B N TYR 90 B N TYR 95 B O PHE 91 B O PHE 96 B N ILE 37 B N ILE 39 B N ARG 38 B N ARG 40 B O GLU 46 B O GLU 48 B N ILE 50 B N ILE 52 B O ARG 58 B O ARG 60 B N VAL 12 B N VAL 12 B O THR 110 B O THR 129 B O ILE 107 B O ILE 126 B N TYR 90 B N TYR 95 B N HIS 94 B N HIS 99 B O VAL 102 B O VAL 121 B N THR 99 B N THR 104 F B O ILE 100 B O ILE 111 B N PHE 122 B N PHE 141 B O LEU 141 B O LEU 160 B N TYR 145 B N TYR 164 B O TYR 176 B O TYR 195 B O VAL 181 B O VAL 200 B N HIS 164 B N HIS 183 B N PHE 122 B N PHE 141 B O LEU 141 B O LEU 160 B N TYR 145 B N TYR 164 B O TYR 176 B O TYR 195 B O SER 177 B O SER 196 B N VAL 169 B N VAL 188 B N SER 153 B N SER 172 B O ASN 197 B O ASN 216 B N VAL 198 B N VAL 217 B O VAL 207 B O VAL 226 1 B OG1 THR 135 B OG1 THR 154 1 Y 1 B CG2 THR 135 B CG2 THR 154 1 Y 1 B SER 127 B SER 146 1 Y 1 B SER 128 B SER 147 1 Y 1 B LYS 129 B LYS 148 1 Y 1 B SER 130 B SER 149 1 Y 1 B THR 131 B THR 150 1 Y 1 B ALA 132 B ALA 151 1 Y 1 B GLY 133 B GLY 152 1 Y 1 B GLY 134 B GLY 153 1 Y 1 B GLY 190 B GLY 209 1 Y 1 B THR 191 B THR 210 1 Y 1 B LYS 214 B LYS 233 1 Y 1 B SER 215 B SER 234 1 Y 1 B CYS 216 B CYS 235 1 Y 1 C ASN 11 C ASN 12 1 Y 1 C TRP 12 C TRP 13 1 Y 1 B B O O HOH HOH 300 330 1.79 1 B C NH1 OE1 ARG GLU 58 3 1.91 1 B B OD1 O ASN HOH 155 310 2.09 1 B B N O LYS HOH 206 330 2.12 1 A A NE OE2 ARG GLU 24 70 2.14 1 B B O O THR HOH 193 310 2.14 1 A A O OG GLN SER 124 127 2.17 1 B B OG1 O THR HOH 65 307 2.18 1 B B O O HOH HOH 330 337 2.19 1 6.77 1.10 114.20 120.97 B B B CA CB SG CYS CYS CYS 92 92 92 N 1 12.44 1.50 119.30 131.74 B B B C N CA GLU PRO PRO 212 213 213 Y 1 -17.70 2.30 115.30 97.60 C C C CA CB CG LEU LEU LEU 1 1 1 N 1 A B OD2 O ASP HOH 50 329 1.96 1_555 4_566 1 A B O O HOH HOH 299 310 2.05 1_555 3_555 1 A THR 30 57.26 -128.70 1 A ALA 51 66.12 -37.05 1 A SER 52 -140.31 -2.94 1 A ALA 84 -172.83 -164.60 1 B THR 15 84.45 -12.34 1 B LEU 29 -89.59 32.35 B 1 B ARG 82 33.00 66.76 M 1 B ALA 100 164.96 163.62 1 B PHE 146 -170.31 138.37 1 B PRO 147 -99.13 -158.17 1 B SER 186 -44.20 -17.84 1 C LEU 1 100.57 70.89 protein_rep.param protein.top water_rep.param water.top 43.0 -5.51 0.00 0.00 5.53 0.00 -0.02 0.225 .006 0.201 0.201 2.44 43.69 1227 25049 4.9 97.5 RANDOM 274434.35 .000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT FLAT MODEL 43.5597 .365832 0.32 0.28 5.00 0.30 0.26 2.44 43.69 267 3677 0 0 3410 0.010 1.7 28.9 1.22 0.29 0.020 0.253 2.59 201 3818 6 5.0 95.9 45.5 2.44 43.69 2P8L 25049 0.054 1 0.274 2.44 refinement CNS 1.0 data collection CrystalClear (MSC/RIGAKU) data reduction CrystalClear (MSC/RIGAKU) data scaling CrystalClear (MSC/RIGAKU) phasing CNS nmAb 2F5 Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptide ELLELDKWASLWN 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N The biological assembly is the light chain and the heavy chain coming together to form the Fab' fragment that interacts with the peptide A ARG 79 A ARG 79 HELX_P A PHE 83 A PHE 83 5 1 5 A SER 121 A SER 121 HELX_P A LYS 126 A LYS 126 1 2 6 A LYS 183 A LYS 183 HELX_P A GLU 187 A GLU 187 1 3 5 B SER 83 B SER 88 HELX_P B THR 87 B THR 92 5 4 5 B ARG 100 B ARG 113 HELX_P B ASN 100 B ASN 117 5 5 5 H L B SER 156 B SER 175 HELX_P B ALA 158 B ALA 177 5 6 3 B LYS 201 B LYS 220 HELX_P B ASN 204 B ASN 223 5 7 4 disulf 2.004 A CYS 23 A SG CYS 23 1_555 A CYS 88 A SG CYS 88 1_555 disulf 2.030 A CYS 134 A SG CYS 134 1_555 A CYS 194 A SG CYS 194 1_555 disulf 2.033 B CYS 22 B SG CYS 22 1_555 B CYS 92 B SG CYS 97 1_555 disulf 2.004 B CYS 140 B SG CYS 159 1_555 B CYS 196 B SG CYS 215 1_555 VIRAL PROTEIN nmAb 2F5, HIV-1, gp41 epitope, viral protein A SER 7 A SER 7 1 A PRO 8 A PRO 8 -1.93 A TYR 94 A TYR 94 1 A PRO 95 A PRO 95 -0.62 A TYR 140 A TYR 140 1 A PRO 141 A PRO 141 0.10 B PHE 146 B PHE 165 1 B PRO 147 B PRO 166 -1.35 B GLU 148 B GLU 167 1 B PRO 149 B PRO 168 0.34 2P8L PDB 1 2P8L 2P8L PDB 2 2P8L 2P8L PDB 3 2P8L 1 214 2P8L 1 214 2P8L A 1 1 214 1 216 2P8L 1 216 2P8L B 2 1 235 0 12 2P8L 0 12 2P8L C 3 1 13 4 6 2 4 4 4 6 4 2 4 4 3 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 4 A LEU 4 A SER 7 A SER 7 A ILE 19 A ILE 19 A ALA 25 A ALA 25 A GLU 70 A GLU 70 A ILE 75 A ILE 75 A PHE 62 A PHE 62 A SER 67 A SER 67 A SER 10 A SER 10 A ALA 13 A ALA 13 A THR 102 A THR 102 A VAL 106 A VAL 106 A THR 85 A THR 85 A GLN 90 A GLN 90 A LEU 33 A LEU 33 A GLN 38 A GLN 38 A GLN 45 A GLN 45 A TYR 49 A TYR 49 A SER 53 A SER 53 A LEU 54 A LEU 54 A PHE 93 A PHE 93 A TYR 94 A TYR 94 C GLU 3 C GLU 4 C LEU 4 C LEU 5 A SER 114 A SER 114 A PHE 118 A PHE 118 A THR 129 A THR 129 A PHE 139 A PHE 139 A TYR 173 A TYR 173 A SER 182 A SER 182 A SER 159 A SER 159 A VAL 163 A VAL 163 A ALA 153 A ALA 153 A LEU 154 A LEU 154 A LYS 145 A LYS 145 A VAL 150 A VAL 150 A VAL 191 A VAL 191 A THR 197 A THR 197 A VAL 205 A VAL 205 A ASN 210 A ASN 210 B THR 3 B THR 3 B SER 7 B SER 7 B LEU 18 B LEU 18 B SER 25 B SER 25 B GLN 77 B GLN 79 B MET 82 B MET 84 B LEU 67 B LEU 69 B ASP 72 B ASP 74 B LEU 11 B LEU 11 B VAL 12 B VAL 12 B ILE 107 B ILE 126 B ILE 111 B ILE 130 B ALA 88 B ALA 93 B ARG 95 B ARG 100 B GLY 35 B GLY 35 B GLN 39 B GLN 41 B GLU 46 B GLU 48 B TYR 52 B TYR 54 B LYS 57 B LYS 59 B TYR 59 B TYR 61 B LEU 11 B LEU 11 B VAL 12 B VAL 12 B ILE 107 B ILE 126 B ILE 111 B ILE 130 B ALA 88 B ALA 93 B ARG 95 B ARG 100 B VAL 102 B VAL 121 B TRP 103 B TRP 122 B THR 99 B THR 104 B THR 100 B THR 105 B PRO 100 B PRO 110 B ALA 100 B ALA 112 E G B SER 120 B SER 139 B LEU 124 B LEU 143 B ALA 136 B ALA 155 B TYR 145 B TYR 164 B TYR 176 B TYR 195 B VAL 184 B VAL 203 B VAL 163 B VAL 182 B THR 165 B THR 184 B SER 120 B SER 139 B LEU 124 B LEU 143 B ALA 136 B ALA 155 B TYR 145 B TYR 164 B TYR 176 B TYR 195 B VAL 184 B VAL 203 B VAL 169 B VAL 188 B LEU 170 B LEU 189 B THR 151 B THR 170 B TRP 154 B TRP 173 B THR 195 B THR 214 B HIS 200 B HIS 219 B THR 205 B THR 224 B ARG 210 B ARG 229 19 P 21 21 21