0.009384
0.000000
0.000000
0.000000
0.009384
0.000000
0.000000
0.000000
0.013227
0.00000
0.00000
0.00000
Tyagi, R.
Eswaramoorthy, S.
0000-0002-2487-9713
Burley, S.K.
Swaminathan, S.
New York SGX Research Center for Structural Genomics (NYSGXRC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
106.562
106.560
75.601
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
The crystal structure of an aminoglycoside 6-adenyltransferase from Bacillus subtilis
0000-0002-2487-9713
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Mirrors
CCD
2007-03-21
ADSC QUANTUM 315
Si(III)
SINGLE WAVELENGTH
M
x-ray
1
0.97900
1.0
X29A
NSLS
0.97900
SYNCHROTRON
NSLS BEAMLINE X29A
35769.473
Aminoglycoside 6-adenylyltransferase
2.7.7.-
Aminoglycoside 6-adenyltransferase
1
man
polymer
18.015
water
82
nat
water
AAD6
no
yes
(MSE)SLRSEQE(MSE)(MSE)DIFLDFALNDERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTDVESFKENDQWLEIFG
KRI(MSE)(MSE)QKPED(MSE)ELFPPELGNWFSYIILFEDGNKLDLTLIPIREAEDYFANNDGLVKVLLDKDSFINYK
VTPNDRQYWIKRPTAREFDDCCNEFW(MSE)VSTYVVKGLARNEILFAIDHLNEIVRPNLLR(MSE)(MSE)AWHIASQK
GYSFS(MSE)GKNYKF(MSE)KRYLSNKEWEEL(MSE)STYSVNGYQE(MSE)WKSLFTCYALFRKYSKAVSEGLAYKYP
DYDEGITKYTEGIYCSVKEGHHHHHH
MSLRSEQEMMDIFLDFALNDERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTDVESFKENDQWLEIFGKRIMMQKPEDME
LFPPELGNWFSYIILFEDGNKLDLTLIPIREAEDYFANNDGLVKVLLDKDSFINYKVTPNDRQYWIKRPTAREFDDCCNE
FWMVSTYVVKGLARNEILFAIDHLNEIVRPNLLRMMAWHIASQKGYSFSMGKNYKFMKRYLSNKEWEELMSTYSVNGYQE
MWKSLFTCYALFRKYSKAVSEGLAYKYPDYDEGITKYTEGIYCSVKEGHHHHHH
A
NYSGXRC-10154a
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Bacillus
168
Escherichia
Escherichia coli
sample
aadK, BSU26790
1423
Bacillus subtilis
469008
Escherichia coli BL21(DE3)
BL21(DE3)
Plasmid
pSGX3
1
3.00
58.99
VAPOR DIFFUSION, HANGING DROP
7.5
20% PEG 4000, 10% Isopropanol, 0.1 M Na-HEPES pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
294
New York SGX Research Center for Structural Genomics
NYSGXRC
PSI, Protein Structure Initiative
audit_author
citation_author
struct_conn
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Structure summary
1
0
2007-04-10
1
1
2008-05-01
1
2
2011-07-13
1
3
2021-02-03
_audit_author.identifier_ORCID
_citation_author.identifier_ORCID
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
Y
RCSB
Y
RCSB
2007-03-28
REL
REL
HOH
water
TIP
1
2
HOH
HOH
293
A
TIP
2
2
HOH
HOH
294
A
TIP
3
2
HOH
HOH
295
A
TIP
4
2
HOH
HOH
296
A
TIP
5
2
HOH
HOH
297
A
TIP
6
2
HOH
HOH
298
A
TIP
7
2
HOH
HOH
299
A
TIP
8
2
HOH
HOH
300
A
TIP
9
2
HOH
HOH
301
A
TIP
10
2
HOH
HOH
302
A
TIP
11
2
HOH
HOH
303
A
TIP
12
2
HOH
HOH
304
A
TIP
13
2
HOH
HOH
305
A
TIP
14
2
HOH
HOH
306
A
TIP
15
2
HOH
HOH
307
A
TIP
16
2
HOH
HOH
308
A
TIP
17
2
HOH
HOH
309
A
TIP
18
2
HOH
HOH
310
A
TIP
19
2
HOH
HOH
311
A
TIP
20
2
HOH
HOH
312
A
TIP
21
2
HOH
HOH
313
A
TIP
22
2
HOH
HOH
314
A
TIP
23
2
HOH
HOH
315
A
TIP
24
2
HOH
HOH
316
A
TIP
25
2
HOH
HOH
317
A
TIP
26
2
HOH
HOH
318
A
TIP
27
2
HOH
HOH
319
A
TIP
28
2
HOH
HOH
320
A
TIP
29
2
HOH
HOH
321
A
TIP
30
2
HOH
HOH
322
A
TIP
31
2
HOH
HOH
323
A
TIP
32
2
HOH
HOH
324
A
TIP
33
2
HOH
HOH
325
A
TIP
34
2
HOH
HOH
326
A
TIP
35
2
HOH
HOH
327
A
TIP
36
2
HOH
HOH
328
A
TIP
37
2
HOH
HOH
329
A
TIP
38
2
HOH
HOH
330
A
TIP
39
2
HOH
HOH
331
A
TIP
40
2
HOH
HOH
332
A
TIP
41
2
HOH
HOH
333
A
TIP
42
2
HOH
HOH
334
A
TIP
43
2
HOH
HOH
335
A
TIP
44
2
HOH
HOH
336
A
TIP
45
2
HOH
HOH
337
A
TIP
46
2
HOH
HOH
338
A
TIP
47
2
HOH
HOH
339
A
TIP
48
2
HOH
HOH
340
A
TIP
49
2
HOH
HOH
341
A
TIP
50
2
HOH
HOH
342
A
TIP
51
2
HOH
HOH
343
A
TIP
52
2
HOH
HOH
344
A
TIP
53
2
HOH
HOH
345
A
TIP
54
2
HOH
HOH
346
A
TIP
55
2
HOH
HOH
347
A
TIP
56
2
HOH
HOH
348
A
TIP
57
2
HOH
HOH
349
A
TIP
58
2
HOH
HOH
350
A
TIP
59
2
HOH
HOH
351
A
TIP
62
2
HOH
HOH
352
A
TIP
63
2
HOH
HOH
353
A
TIP
65
2
HOH
HOH
354
A
TIP
66
2
HOH
HOH
355
A
TIP
67
2
HOH
HOH
356
A
TIP
68
2
HOH
HOH
357
A
TIP
69
2
HOH
HOH
358
A
TIP
70
2
HOH
HOH
359
A
TIP
72
2
HOH
HOH
360
A
TIP
74
2
HOH
HOH
361
A
TIP
75
2
HOH
HOH
362
A
TIP
76
2
HOH
HOH
363
A
TIP
77
2
HOH
HOH
364
A
TIP
78
2
HOH
HOH
365
A
TIP
79
2
HOH
HOH
366
A
TIP
80
2
HOH
HOH
367
A
TIP
81
2
HOH
HOH
368
A
TIP
82
2
HOH
HOH
369
A
TIP
83
2
HOH
HOH
370
A
TIP
84
2
HOH
HOH
371
A
TIP
85
2
HOH
HOH
372
A
TIP
86
2
HOH
HOH
373
A
TIP
87
2
HOH
HOH
374
A
n
1
-1
A
n
2
0
A
LEU
2
n
3
LEU
1
A
ARG
3
n
4
ARG
2
A
SER
4
n
5
SER
3
A
GLU
5
n
6
GLU
4
A
GLN
6
n
7
GLN
5
A
GLU
7
n
8
GLU
6
A
MSE
8
n
9
MSE
7
A
MSE
9
n
10
MSE
8
A
ASP
10
n
11
ASP
9
A
ILE
11
n
12
ILE
10
A
PHE
12
n
13
PHE
11
A
LEU
13
n
14
LEU
12
A
ASP
14
n
15
ASP
13
A
PHE
15
n
16
PHE
14
A
ALA
16
n
17
ALA
15
A
LEU
17
n
18
LEU
16
A
ASN
18
n
19
ASN
17
A
ASP
19
n
20
ASP
18
A
GLU
20
n
21
GLU
19
A
ARG
21
n
22
ARG
20
A
ILE
22
n
23
ILE
21
A
ARG
23
n
24
ARG
22
A
LEU
24
n
25
LEU
23
A
VAL
25
n
26
VAL
24
A
THR
26
n
27
THR
25
A
LEU
27
n
28
LEU
26
A
GLU
28
n
29
GLU
27
A
n
30
28
A
n
31
29
A
n
32
30
A
n
33
31
A
n
34
32
A
n
35
33
A
n
36
34
A
n
37
35
A
n
38
36
A
n
39
37
A
n
40
38
A
n
41
39
A
PHE
40
n
42
PHE
40
A
GLN
41
n
43
GLN
41
A
ASP
42
n
44
ASP
42
A
TYR
43
n
45
TYR
43
A
ASP
44
n
46
ASP
44
A
ILE
45
n
47
ILE
45
A
SER
46
n
48
SER
46
A
TYR
47
n
49
TYR
47
A
PHE
48
n
50
PHE
48
A
VAL
49
n
51
VAL
49
A
THR
50
n
52
THR
50
A
ASP
51
n
53
ASP
51
A
VAL
52
n
54
VAL
52
A
GLU
53
n
55
GLU
53
A
SER
54
n
56
SER
54
A
PHE
55
n
57
PHE
55
A
LYS
56
n
58
LYS
56
A
GLU
57
n
59
GLU
57
A
ASN
58
n
60
ASN
58
A
ASP
59
n
61
ASP
59
A
GLN
60
n
62
GLN
60
A
TRP
61
n
63
TRP
61
A
LEU
62
n
64
LEU
62
A
GLU
63
n
65
GLU
63
A
ILE
64
n
66
ILE
64
A
PHE
65
n
67
PHE
65
A
GLY
66
n
68
GLY
66
A
LYS
67
n
69
LYS
67
A
ARG
68
n
70
ARG
68
A
ILE
69
n
71
ILE
69
A
MSE
70
n
72
MSE
70
A
MSE
71
n
73
MSE
71
A
GLN
72
n
74
GLN
72
A
LYS
73
n
75
LYS
73
A
PRO
74
n
76
PRO
74
A
GLU
75
n
77
GLU
75
A
ASP
76
n
78
ASP
76
A
MSE
77
n
79
MSE
77
A
GLU
78
n
80
GLU
78
A
LEU
79
n
81
LEU
79
A
PHE
80
n
82
PHE
80
A
PRO
81
n
83
PRO
81
A
PRO
82
n
84
PRO
82
A
GLU
83
n
85
GLU
83
A
LEU
84
n
86
LEU
84
A
GLY
85
n
87
GLY
85
A
ASN
86
n
88
ASN
86
A
TRP
87
n
89
TRP
87
A
PHE
88
n
90
PHE
88
A
SER
89
n
91
SER
89
A
TYR
90
n
92
TYR
90
A
ILE
91
n
93
ILE
91
A
ILE
92
n
94
ILE
92
A
LEU
93
n
95
LEU
93
A
PHE
94
n
96
PHE
94
A
GLU
95
n
97
GLU
95
A
ASP
96
n
98
ASP
96
A
GLY
97
n
99
GLY
97
A
ASN
98
n
100
ASN
98
A
LYS
99
n
101
LYS
99
A
LEU
100
n
102
LEU
100
A
ASP
101
n
103
ASP
101
A
LEU
102
n
104
LEU
102
A
THR
103
n
105
THR
103
A
LEU
104
n
106
LEU
104
A
ILE
105
n
107
ILE
105
A
PRO
106
n
108
PRO
106
A
ILE
107
n
109
ILE
107
A
ARG
108
n
110
ARG
108
A
GLU
109
n
111
GLU
109
A
ALA
110
n
112
ALA
110
A
GLU
111
n
113
GLU
111
A
ASP
112
n
114
ASP
112
A
TYR
113
n
115
TYR
113
A
PHE
114
n
116
PHE
114
A
ALA
115
n
117
ALA
115
A
ASN
116
n
118
ASN
116
A
n
119
117
A
n
120
118
A
n
121
119
A
n
122
120
A
n
123
121
A
ALA
122
n
124
LYS
122
A
VAL
123
n
125
VAL
123
A
LEU
124
n
126
LEU
124
A
LEU
125
n
127
LEU
125
A
ASP
126
n
128
ASP
126
A
LYS
127
n
129
LYS
127
A
ASP
128
n
130
ASP
128
A
SER
129
n
131
SER
129
A
ALA
130
n
132
PHE
130
A
ILE
131
n
133
ILE
131
A
ALA
132
n
134
ASN
132
A
TYR
133
n
135
TYR
133
A
ALA
134
n
136
LYS
134
A
VAL
135
n
137
VAL
135
A
n
138
136
A
n
139
137
A
ALA
138
n
140
ASN
138
A
ASP
139
n
141
ASP
139
A
ALA
140
n
142
ARG
140
A
GLN
141
n
143
GLN
141
A
TYR
142
n
144
TYR
142
A
TRP
143
n
145
TRP
143
A
ILE
144
n
146
ILE
144
A
LYS
145
n
147
LYS
145
A
ARG
146
n
148
ARG
146
A
PRO
147
n
149
PRO
147
A
THR
148
n
150
THR
148
A
ALA
149
n
151
ALA
149
A
ARG
150
n
152
ARG
150
A
GLU
151
n
153
GLU
151
A
PHE
152
n
154
PHE
152
A
ASP
153
n
155
ASP
153
A
ASP
154
n
156
ASP
154
A
CYS
155
n
157
CYS
155
A
CYS
156
n
158
CYS
156
A
ASN
157
n
159
ASN
157
A
GLU
158
n
160
GLU
158
A
PHE
159
n
161
PHE
159
A
TRP
160
n
162
TRP
160
A
MSE
161
n
163
MSE
161
A
VAL
162
n
164
VAL
162
A
SER
163
n
165
SER
163
A
THR
164
n
166
THR
164
A
TYR
165
n
167
TYR
165
A
VAL
166
n
168
VAL
166
A
VAL
167
n
169
VAL
167
A
LYS
168
n
170
LYS
168
A
GLY
169
n
171
GLY
169
A
LEU
170
n
172
LEU
170
A
ALA
171
n
173
ALA
171
A
ARG
172
n
174
ARG
172
A
ASN
173
n
175
ASN
173
A
GLU
174
n
176
GLU
174
A
ILE
175
n
177
ILE
175
A
LEU
176
n
178
LEU
176
A
PHE
177
n
179
PHE
177
A
ALA
178
n
180
ALA
178
A
ILE
179
n
181
ILE
179
A
ASP
180
n
182
ASP
180
A
HIS
181
n
183
HIS
181
A
LEU
182
n
184
LEU
182
A
ASN
183
n
185
ASN
183
A
GLU
184
n
186
GLU
184
A
ILE
185
n
187
ILE
185
A
VAL
186
n
188
VAL
186
A
ARG
187
n
189
ARG
187
A
PRO
188
n
190
PRO
188
A
ASN
189
n
191
ASN
189
A
LEU
190
n
192
LEU
190
A
LEU
191
n
193
LEU
191
A
ARG
192
n
194
ARG
192
A
MSE
193
n
195
MSE
193
A
MSE
194
n
196
MSE
194
A
ALA
195
n
197
ALA
195
A
TRP
196
n
198
TRP
196
A
HIS
197
n
199
HIS
197
A
ILE
198
n
200
ILE
198
A
ALA
199
n
201
ALA
199
A
SER
200
n
202
SER
200
A
GLN
201
n
203
GLN
201
A
LYS
202
n
204
LYS
202
A
GLY
203
n
205
GLY
203
A
TYR
204
n
206
TYR
204
A
SER
205
n
207
SER
205
A
PHE
206
n
208
PHE
206
A
SER
207
n
209
SER
207
A
MSE
208
n
210
MSE
208
A
GLY
209
n
211
GLY
209
A
LYS
210
n
212
LYS
210
A
ASN
211
n
213
ASN
211
A
TYR
212
n
214
TYR
212
A
LYS
213
n
215
LYS
213
A
PHE
214
n
216
PHE
214
A
MSE
215
n
217
MSE
215
A
LYS
216
n
218
LYS
216
A
ARG
217
n
219
ARG
217
A
TYR
218
n
220
TYR
218
A
LEU
219
n
221
LEU
219
A
SER
220
n
222
SER
220
A
ASN
221
n
223
ASN
221
A
LYS
222
n
224
LYS
222
A
GLU
223
n
225
GLU
223
A
TRP
224
n
226
TRP
224
A
GLU
225
n
227
GLU
225
A
GLU
226
n
228
GLU
226
A
LEU
227
n
229
LEU
227
A
MSE
228
n
230
MSE
228
A
SER
229
n
231
SER
229
A
THR
230
n
232
THR
230
A
TYR
231
n
233
TYR
231
A
SER
232
n
234
SER
232
A
VAL
233
n
235
VAL
233
A
ASN
234
n
236
ASN
234
A
GLY
235
n
237
GLY
235
A
TYR
236
n
238
TYR
236
A
GLN
237
n
239
GLN
237
A
GLU
238
n
240
GLU
238
A
MSE
239
n
241
MSE
239
A
TRP
240
n
242
TRP
240
A
LYS
241
n
243
LYS
241
A
SER
242
n
244
SER
242
A
LEU
243
n
245
LEU
243
A
PHE
244
n
246
PHE
244
A
THR
245
n
247
THR
245
A
CYS
246
n
248
CYS
246
A
TYR
247
n
249
TYR
247
A
ALA
248
n
250
ALA
248
A
LEU
249
n
251
LEU
249
A
PHE
250
n
252
PHE
250
A
ARG
251
n
253
ARG
251
A
LYS
252
n
254
LYS
252
A
TYR
253
n
255
TYR
253
A
SER
254
n
256
SER
254
A
LYS
255
n
257
LYS
255
A
ALA
256
n
258
ALA
256
A
VAL
257
n
259
VAL
257
A
SER
258
n
260
SER
258
A
GLU
259
n
261
GLU
259
A
GLY
260
n
262
GLY
260
A
LEU
261
n
263
LEU
261
A
ALA
262
n
264
ALA
262
A
TYR
263
n
265
TYR
263
A
LYS
264
n
266
LYS
264
A
TYR
265
n
267
TYR
265
A
PRO
266
n
268
PRO
266
A
ASP
267
n
269
ASP
267
A
TYR
268
n
270
TYR
268
A
ASP
269
n
271
ASP
269
A
GLU
270
n
272
GLU
270
A
GLY
271
n
273
GLY
271
A
ILE
272
n
274
ILE
272
A
THR
273
n
275
THR
273
A
LYS
274
n
276
LYS
274
A
TYR
275
n
277
TYR
275
A
THR
276
n
278
THR
276
A
GLU
277
n
279
GLU
277
A
GLY
278
n
280
GLY
278
A
ILE
279
n
281
ILE
279
A
TYR
280
n
282
TYR
280
A
CYS
281
n
283
CYS
281
A
SER
282
n
284
SER
282
A
n
285
283
A
n
286
284
A
n
287
285
A
n
288
286
A
n
289
287
A
n
290
288
A
n
291
289
A
n
292
290
A
n
293
291
A
n
294
292
A
author_defined_assembly
1
monomeric
A
MSE
7
SELENOMETHIONINE
A
MSE
9
MET
A
MSE
8
SELENOMETHIONINE
A
MSE
10
MET
A
MSE
70
SELENOMETHIONINE
A
MSE
72
MET
A
MSE
71
SELENOMETHIONINE
A
MSE
73
MET
A
MSE
77
SELENOMETHIONINE
A
MSE
79
MET
A
MSE
161
SELENOMETHIONINE
A
MSE
163
MET
A
MSE
193
SELENOMETHIONINE
A
MSE
195
MET
A
MSE
194
SELENOMETHIONINE
A
MSE
196
MET
A
MSE
208
SELENOMETHIONINE
A
MSE
210
MET
A
MSE
215
SELENOMETHIONINE
A
MSE
217
MET
A
MSE
228
SELENOMETHIONINE
A
MSE
230
MET
A
MSE
239
SELENOMETHIONINE
A
MSE
241
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
69
A
N
ILE
71
A
O
LEU
93
A
O
LEU
95
A
N
PHE
88
A
N
PHE
90
A
O
LEU
104
A
O
LEU
106
A
O
LYS
99
A
O
LYS
101
A
N
TYR
43
A
N
TYR
45
A
O
PHE
48
A
O
PHE
50
A
N
LEU
23
A
N
LEU
25
A
N
VAL
24
A
N
VAL
26
A
O
LEU
124
A
O
LEU
126
A
N
ASP
126
A
N
ASP
128
A
O
SER
205
A
O
SER
207
A
O
PHE
206
A
O
PHE
208
A
N
ILE
144
A
N
ILE
146
1
A
CG
LYS
122
A
CG
LYS
124
1
Y
1
A
CD
LYS
122
A
CD
LYS
124
1
Y
1
A
CE
LYS
122
A
CE
LYS
124
1
Y
1
A
NZ
LYS
122
A
NZ
LYS
124
1
Y
1
A
CG
PHE
130
A
CG
PHE
132
1
Y
1
A
CD1
PHE
130
A
CD1
PHE
132
1
Y
1
A
CD2
PHE
130
A
CD2
PHE
132
1
Y
1
A
CE1
PHE
130
A
CE1
PHE
132
1
Y
1
A
CE2
PHE
130
A
CE2
PHE
132
1
Y
1
A
CZ
PHE
130
A
CZ
PHE
132
1
Y
1
A
CG
ASN
132
A
CG
ASN
134
1
Y
1
A
OD1
ASN
132
A
OD1
ASN
134
1
Y
1
A
ND2
ASN
132
A
ND2
ASN
134
1
Y
1
A
CG
LYS
134
A
CG
LYS
136
1
Y
1
A
CD
LYS
134
A
CD
LYS
136
1
Y
1
A
CE
LYS
134
A
CE
LYS
136
1
Y
1
A
NZ
LYS
134
A
NZ
LYS
136
1
Y
1
A
CG
ASN
138
A
CG
ASN
140
1
Y
1
A
OD1
ASN
138
A
OD1
ASN
140
1
Y
1
A
ND2
ASN
138
A
ND2
ASN
140
1
Y
1
A
CG
ARG
140
A
CG
ARG
142
1
Y
1
A
CD
ARG
140
A
CD
ARG
142
1
Y
1
A
NE
ARG
140
A
NE
ARG
142
1
Y
1
A
CZ
ARG
140
A
CZ
ARG
142
1
Y
1
A
NH1
ARG
140
A
NH1
ARG
142
1
Y
1
A
NH2
ARG
140
A
NH2
ARG
142
1
Y
1
A
MSE
-1
A
MSE
1
1
Y
1
A
SER
0
A
SER
2
1
Y
1
A
GLY
28
A
GLY
30
1
Y
1
A
SER
29
A
SER
31
1
Y
1
A
ARG
30
A
ARG
32
1
Y
1
A
THR
31
A
THR
33
1
Y
1
A
ASN
32
A
ASN
34
1
Y
1
A
ARG
33
A
ARG
35
1
Y
1
A
ASN
34
A
ASN
36
1
Y
1
A
ILE
35
A
ILE
37
1
Y
1
A
PRO
36
A
PRO
38
1
Y
1
A
PRO
37
A
PRO
39
1
Y
1
A
ASP
38
A
ASP
40
1
Y
1
A
ASN
39
A
ASN
41
1
Y
1
A
ASN
117
A
ASN
119
1
Y
1
A
ASP
118
A
ASP
120
1
Y
1
A
GLY
119
A
GLY
121
1
Y
1
A
LEU
120
A
LEU
122
1
Y
1
A
VAL
121
A
VAL
123
1
Y
1
A
THR
136
A
THR
138
1
Y
1
A
PRO
137
A
PRO
139
1
Y
1
A
VAL
283
A
VAL
285
1
Y
1
A
LYS
284
A
LYS
286
1
Y
1
A
GLU
285
A
GLU
287
1
Y
1
A
GLY
286
A
GLY
288
1
Y
1
A
HIS
287
A
HIS
289
1
Y
1
A
HIS
288
A
HIS
290
1
Y
1
A
HIS
289
A
HIS
291
1
Y
1
A
HIS
290
A
HIS
292
1
Y
1
A
HIS
291
A
HIS
293
1
Y
1
A
HIS
292
A
HIS
294
1
Y
1
A
ARG
2
42.63
99.49
1
A
GLU
83
-155.27
58.43
1
A
ALA
115
-34.85
-80.76
1
A
TYR
133
-167.51
-164.11
1
A
LYS
134
-33.22
178.80
1
A
ILE
185
-131.62
-54.14
1
A
TYR
218
-139.28
-35.06
1
A
CYS
281
-77.30
-86.73
protein_rep.param
protein.top
ion.param
water_rep.param
40.0
6.13
0.00
0.00
5.51
0.00
-11.64
Residues listed as missing in Remark 465 are due to lack of electron density. Residues with missing atoms listed in Remark 470 are due to lack of electron density for side chains and modeled as alanines.
0.284
0.015
0.224
0.224
0.224
2.65
35.63
357
11653
11653
3.1
88.7
RANDOM
45802.79
0.000000
1
RESTRAINED
THROUGHOUT
0.0
0
SAD
Engh & Huber
FLAT MODEL
35.2634
0.365568
0.43
0.34
5.00
0.51
0.40
2.65
35.63
82
2285
0
0
2203
0.015
1.4
21.3
0.88
0.367
0.055
0.317
2.82
44
1041
6
4.1
50.7
23.6
2.65
50.00
2PBE
12063
12063
0
0.117
1
9.8
20.4
91.7
0.278
2.65
2.74
5.1
653
6.1
50.9
refinement
CNS
1.1
data collection
CBASS
data reduction
HKL-2000
data scaling
HKL-2000
phasing
SHELX
phasing
SHARP
Aminoglycoside 6-adenylyltransferase (E.C.2.7.7.-)
Crystal structure of an aminoglycoside 6-adenyltransferase from Bacillus subtilis
1
N
N
2
N
N
A
SER
3
A
SER
5
HELX_P
A
ASP
18
A
ASP
20
1
1
16
A
ASP
51
A
ASP
53
HELX_P
A
GLU
57
A
GLU
59
1
2
7
A
ASN
58
A
ASN
60
HELX_P
A
GLY
66
A
GLY
68
5
3
9
A
GLU
109
A
GLU
111
HELX_P
A
ASN
116
A
ASN
118
1
4
8
A
ASN
138
A
ASN
140
HELX_P
A
GLN
141
A
GLN
143
5
5
4
A
THR
148
A
THR
150
HELX_P
A
ARG
172
A
ARG
174
1
6
25
A
GLU
174
A
GLU
176
HELX_P
A
ILE
185
A
ILE
187
1
7
12
A
ILE
185
A
ILE
187
HELX_P
A
GLY
203
A
GLY
205
1
8
19
A
GLY
209
A
GLY
211
HELX_P
A
LYS
213
A
LYS
215
5
9
5
A
PHE
214
A
PHE
216
HELX_P
A
TYR
218
A
TYR
220
5
10
5
A
SER
220
A
SER
222
HELX_P
A
SER
229
A
SER
231
1
11
10
A
GLY
235
A
GLY
237
HELX_P
A
ALA
262
A
ALA
264
1
12
28
A
ASP
267
A
ASP
269
HELX_P
A
SER
282
A
SER
284
1
13
16
covale
1.332
both
A
GLU
6
A
C
GLU
8
1_555
A
MSE
7
A
N
MSE
9
1_555
covale
1.323
both
A
MSE
7
A
C
MSE
9
1_555
A
MSE
8
A
N
MSE
10
1_555
covale
1.331
both
A
MSE
8
A
C
MSE
10
1_555
A
ASP
9
A
N
ASP
11
1_555
covale
1.330
both
A
ILE
69
A
C
ILE
71
1_555
A
MSE
70
A
N
MSE
72
1_555
covale
1.332
both
A
MSE
70
A
C
MSE
72
1_555
A
MSE
71
A
N
MSE
73
1_555
covale
1.336
both
A
MSE
71
A
C
MSE
73
1_555
A
GLN
72
A
N
GLN
74
1_555
covale
1.326
both
A
ASP
76
A
C
ASP
78
1_555
A
MSE
77
A
N
MSE
79
1_555
covale
1.326
both
A
MSE
77
A
C
MSE
79
1_555
A
GLU
78
A
N
GLU
80
1_555
covale
1.331
both
A
TRP
160
A
C
TRP
162
1_555
A
MSE
161
A
N
MSE
163
1_555
covale
1.325
both
A
MSE
161
A
C
MSE
163
1_555
A
VAL
162
A
N
VAL
164
1_555
covale
1.328
both
A
ARG
192
A
C
ARG
194
1_555
A
MSE
193
A
N
MSE
195
1_555
covale
1.330
both
A
MSE
193
A
C
MSE
195
1_555
A
MSE
194
A
N
MSE
196
1_555
covale
1.328
both
A
MSE
194
A
C
MSE
196
1_555
A
ALA
195
A
N
ALA
197
1_555
covale
1.329
both
A
SER
207
A
C
SER
209
1_555
A
MSE
208
A
N
MSE
210
1_555
covale
1.330
both
A
MSE
208
A
C
MSE
210
1_555
A
GLY
209
A
N
GLY
211
1_555
covale
1.324
both
A
PHE
214
A
C
PHE
216
1_555
A
MSE
215
A
N
MSE
217
1_555
covale
1.332
both
A
MSE
215
A
C
MSE
217
1_555
A
LYS
216
A
N
LYS
218
1_555
covale
1.327
both
A
LEU
227
A
C
LEU
229
1_555
A
MSE
228
A
N
MSE
230
1_555
covale
1.330
both
A
MSE
228
A
C
MSE
230
1_555
A
SER
229
A
N
SER
231
1_555
covale
1.318
both
A
GLU
238
A
C
GLU
240
1_555
A
MSE
239
A
N
MSE
241
1_555
covale
1.326
both
A
MSE
239
A
C
MSE
241
1_555
A
TRP
240
A
N
TRP
242
1_555
TRANSFERASE
10154a, NYSGXRC, Aminoglycoside 6-adenyltransferase, PSI-2, Structural Genomics, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, TRANSFERASE
AADK_BACSU
UNP
1
2
P17585
RSEQEMMDIFLDFALNDERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTDVESFKENDQWLEIFGKRIMMQKPEDMELFP
PELGNWFSYIILFEDGNKLDLTLIPIREAEDYFANNDGLVKVLLDKDSFINYKVTPNDRQYWIKRPTAREFDDCCNEFWM
VSTYVVKGLARNEILFAIDHLNEIVRPNLLRMMAWHIASQKGYSFSMGKNYKFMKRYLSNKEWEELMSTYSVNGYQEMWK
SLFTCYALFRKYSKAVSEGLAYKYPDYDEGITKYTEGIYCSVK
2
284
2PBE
2
284
P17585
A
1
4
286
1
cloning artifact
MSE
-1
2PBE
A
P17585
UNP
1
1
cloning artifact
SER
0
2PBE
A
P17585
UNP
2
1
cloning artifact
LEU
1
2PBE
A
P17585
UNP
3
1
MET
modified residue
MSE
7
2PBE
A
P17585
UNP
7
9
1
MET
modified residue
MSE
8
2PBE
A
P17585
UNP
8
10
1
MET
modified residue
MSE
70
2PBE
A
P17585
UNP
70
72
1
MET
modified residue
MSE
71
2PBE
A
P17585
UNP
71
73
1
MET
modified residue
MSE
77
2PBE
A
P17585
UNP
77
79
1
MET
modified residue
MSE
161
2PBE
A
P17585
UNP
161
163
1
MET
modified residue
MSE
193
2PBE
A
P17585
UNP
193
195
1
MET
modified residue
MSE
194
2PBE
A
P17585
UNP
194
196
1
MET
modified residue
MSE
208
2PBE
A
P17585
UNP
208
210
1
MET
modified residue
MSE
215
2PBE
A
P17585
UNP
215
217
1
MET
modified residue
MSE
228
2PBE
A
P17585
UNP
228
230
1
MET
modified residue
MSE
239
2PBE
A
P17585
UNP
239
241
1
cloning artifact
GLU
285
2PBE
A
P17585
UNP
287
1
cloning artifact
GLY
286
2PBE
A
P17585
UNP
288
1
cloning artifact
HIS
287
2PBE
A
P17585
UNP
289
1
cloning artifact
HIS
288
2PBE
A
P17585
UNP
290
1
cloning artifact
HIS
289
2PBE
A
P17585
UNP
291
1
cloning artifact
HIS
290
2PBE
A
P17585
UNP
292
1
cloning artifact
HIS
291
2PBE
A
P17585
UNP
293
1
cloning artifact
HIS
292
2PBE
A
P17585
UNP
294
8
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
68
A
ARG
70
A
GLN
72
A
GLN
74
A
PHE
88
A
PHE
90
A
PHE
94
A
PHE
96
A
LYS
99
A
LYS
101
A
PRO
106
A
PRO
108
A
TYR
43
A
TYR
45
A
VAL
49
A
VAL
51
A
ILE
21
A
ILE
23
A
LEU
26
A
LEU
28
A
VAL
123
A
VAL
125
A
ASP
126
A
ASP
128
A
SER
205
A
SER
207
A
SER
207
A
SER
209
A
TRP
143
A
TRP
145
A
ILE
144
A
ILE
146
94
P 42 21 2