0.023026
0.000000
0.000000
0.000000
0.016736
0.000000
0.000000
0.000000
0.007198
0.00000
0.00000
0.00000
Sekulic, N.
Lavie, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
43.430
59.750
138.920
C10 H14 N5 O10 P S
427.284
ADENOSINE-5'-PHOSPHOSULFATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H15 N5 O9 P2
411.202
2'-DEOXYADENOSINE-5'-DIPHOSPHATE
DADP
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
S
N
2
N
O
N
3
N
O
N
4
N
O
N
5
S
P
N
6
N
O
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
C
N
11
R
C
N
12
N
O
N
13
S
C
N
14
N
O
N
15
R
C
N
16
N
O
N
17
R
C
Y
18
N
N
Y
19
N
C
Y
20
N
N
Y
21
N
C
Y
22
N
C
N
23
N
N
Y
24
N
N
Y
25
N
C
Y
26
N
N
Y
27
N
C
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
N
N
43
S
C
N
44
N
C
N
45
N
O
N
46
N
C
N
47
N
O
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
N
N
56
S
C
N
57
N
C
N
58
N
O
N
59
N
C
N
60
N
C
N
61
N
C
N
62
N
N
N
63
N
C
N
64
N
N
N
65
N
N
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
N
N
83
S
C
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
N
N
100
S
C
N
101
N
C
N
102
N
O
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
O
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
R
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
S
N
121
N
O
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
P
N
130
N
O
N
131
N
O
N
132
N
O
N
133
S
P
N
134
N
O
N
135
N
O
N
136
N
O
N
137
N
O
N
138
N
C
N
139
R
C
N
140
N
O
N
141
S
C
N
142
N
O
N
143
N
C
N
144
R
C
Y
145
N
N
Y
146
N
C
Y
147
N
N
Y
148
N
C
Y
149
N
C
N
150
N
N
Y
151
N
N
Y
152
N
C
Y
153
N
N
Y
154
N
C
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
N
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
N
N
191
S
C
N
192
N
C
N
193
N
O
N
194
N
C
N
195
N
C
N
196
N
C
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
N
C
N
211
N
C
N
212
N
O
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
Y
224
N
C
Y
225
N
N
Y
226
N
C
Y
227
N
C
Y
228
N
N
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
S
C
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
C
N
295
N
N
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
C
N
318
N
S
N
319
N
C
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
N
360
N
C
N
361
N
C
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
O
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
R
C
N
391
N
O
N
392
N
C
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
N
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
N
441
N
O
N
442
N
O
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
N
N
455
S
C
N
456
N
C
N
457
N
O
N
458
N
C
N
459
N
C
N
460
N
C
N
461
N
O
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
1
N
doub
N
2
N
doub
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
doub
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
sing
Y
34
N
sing
Y
35
N
doub
N
36
N
sing
Y
37
N
doub
N
38
N
sing
N
39
N
sing
Y
40
N
sing
Y
41
N
doub
N
42
N
sing
Y
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
doub
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
Y
154
N
sing
Y
155
N
sing
Y
156
N
doub
N
157
N
sing
Y
158
N
sing
Y
159
N
sing
Y
160
N
doub
N
161
N
sing
Y
162
N
doub
N
163
N
sing
N
164
N
sing
Y
165
N
sing
Y
166
N
doub
N
167
N
sing
Y
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
Y
226
N
sing
Y
227
N
doub
Y
228
N
doub
N
229
N
sing
Y
230
N
sing
N
231
N
sing
Y
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
doub
N
341
N
sing
Y
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
Y
403
N
doub
Y
404
N
sing
Y
405
N
sing
N
406
N
sing
Y
407
N
doub
Y
408
N
sing
Y
409
N
sing
N
410
N
sing
Y
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
doub
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
Y
431
N
doub
Y
432
N
sing
Y
433
N
sing
N
434
N
sing
Y
435
N
doub
N
436
N
sing
Y
437
N
doub
N
438
N
sing
Y
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
doub
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
282
22112
22121
10.1074/jbc.M701713200
17540769
Structural mechanism for substrate inhibition of the adenosine 5'-phosphosulfate kinase domain of human 3'-phosphoadenosine 5'-phosphosulfate synthetase 1 and its ramifications for enzyme regulation.
2007
10.2210/pdb2pey/pdb
pdb_00002pey
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
193
1
CCD
2006-04-07
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
22-BM
APS
1.0
SYNCHROTRON
APS BEAMLINE 22-BM
19874.469
Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthetase 1 (PAPS synthetase 1) (PAPSS 1) (Sulfurylase kinase 1) (SK1) (SK 1)
2.7.1.25
APS-kinase domain (residues 51-226)
2
man
polymer
427.284
ADENOSINE-5'-PHOSPHOSULFATE
1
syn
non-polymer
411.202
2'-DEOXYADENOSINE-5'-DIPHOSPHATE
2
syn
non-polymer
18.015
water
172
nat
water
no
no
GHMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVC
ITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSC
DVNDCVQQVVELLQERDIV
GHMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVC
ITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSC
DVNDCVQQVVELLQERDIV
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
PAPSS1, ATPSK1, PAPSS
9606
Homo sapiens
562
Escherichia coli
BL-21 codon plus
plasmid
pGEX-RB in which the thrombin site was replaced by TEV cutting site
1
2.30
46.62
VAPOR DIFFUSION, HANGING DROP
5.0
reservoir: 16-20% PEG 3350, 0.25-0.15 M diammonium hydrogen citrate, drop: 3.2 mg/ml protein solution, 2mM dADP, 2mM APS, 5mM MgCl2, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
struct
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Structure summary
Data collection
Database references
Refinement description
1
0
2007-05-29
1
1
2008-05-01
1
2
2011-07-13
1
3
2020-09-09
1
4
2023-08-30
_struct.title
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2007-04-03
REL
REL
ADX
ADENOSINE-5'-PHOSPHOSULFATE
DAT
2'-DEOXYADENOSINE-5'-DIPHOSPHATE
HOH
water
2OFX
PDB entry 2OFX
PDB
experimental model
ADX
400
2
ADX
ADX
400
A
DAT
300
3
DAT
DAT
300
A
DAT
200
3
DAT
DAT
227
B
HOH
2
4
HOH
HOH
401
A
HOH
5
4
HOH
HOH
402
A
HOH
6
4
HOH
HOH
403
A
HOH
10
4
HOH
HOH
404
A
HOH
12
4
HOH
HOH
405
A
HOH
13
4
HOH
HOH
406
A
HOH
14
4
HOH
HOH
407
A
HOH
15
4
HOH
HOH
408
A
HOH
19
4
HOH
HOH
409
A
HOH
21
4
HOH
HOH
410
A
HOH
25
4
HOH
HOH
411
A
HOH
26
4
HOH
HOH
412
A
HOH
32
4
HOH
HOH
413
A
HOH
33
4
HOH
HOH
414
A
HOH
35
4
HOH
HOH
415
A
HOH
41
4
HOH
HOH
416
A
HOH
42
4
HOH
HOH
417
A
HOH
43
4
HOH
HOH
418
A
HOH
44
4
HOH
HOH
419
A
HOH
46
4
HOH
HOH
420
A
HOH
47
4
HOH
HOH
421
A
HOH
48
4
HOH
HOH
422
A
HOH
50
4
HOH
HOH
423
A
HOH
51
4
HOH
HOH
424
A
HOH
52
4
HOH
HOH
425
A
HOH
54
4
HOH
HOH
426
A
HOH
56
4
HOH
HOH
427
A
HOH
58
4
HOH
HOH
428
A
HOH
61
4
HOH
HOH
429
A
HOH
62
4
HOH
HOH
430
A
HOH
64
4
HOH
HOH
431
A
HOH
65
4
HOH
HOH
432
A
HOH
66
4
HOH
HOH
433
A
HOH
67
4
HOH
HOH
434
A
HOH
68
4
HOH
HOH
435
A
HOH
69
4
HOH
HOH
436
A
HOH
72
4
HOH
HOH
437
A
HOH
73
4
HOH
HOH
438
A
HOH
74
4
HOH
HOH
439
A
HOH
76
4
HOH
HOH
440
A
HOH
79
4
HOH
HOH
441
A
HOH
80
4
HOH
HOH
442
A
HOH
83
4
HOH
HOH
443
A
HOH
84
4
HOH
HOH
444
A
HOH
87
4
HOH
HOH
445
A
HOH
88
4
HOH
HOH
446
A
HOH
91
4
HOH
HOH
447
A
HOH
93
4
HOH
HOH
448
A
HOH
94
4
HOH
HOH
449
A
HOH
95
4
HOH
HOH
450
A
HOH
97
4
HOH
HOH
451
A
HOH
98
4
HOH
HOH
452
A
HOH
99
4
HOH
HOH
453
A
HOH
100
4
HOH
HOH
454
A
HOH
103
4
HOH
HOH
455
A
HOH
106
4
HOH
HOH
456
A
HOH
107
4
HOH
HOH
457
A
HOH
111
4
HOH
HOH
458
A
HOH
114
4
HOH
HOH
459
A
HOH
116
4
HOH
HOH
460
A
HOH
117
4
HOH
HOH
461
A
HOH
118
4
HOH
HOH
462
A
HOH
120
4
HOH
HOH
463
A
HOH
123
4
HOH
HOH
464
A
HOH
124
4
HOH
HOH
465
A
HOH
125
4
HOH
HOH
466
A
HOH
128
4
HOH
HOH
467
A
HOH
132
4
HOH
HOH
468
A
HOH
133
4
HOH
HOH
469
A
HOH
134
4
HOH
HOH
470
A
HOH
135
4
HOH
HOH
471
A
HOH
136
4
HOH
HOH
472
A
HOH
137
4
HOH
HOH
473
A
HOH
138
4
HOH
HOH
474
A
HOH
139
4
HOH
HOH
475
A
HOH
144
4
HOH
HOH
476
A
HOH
145
4
HOH
HOH
477
A
HOH
149
4
HOH
HOH
478
A
HOH
151
4
HOH
HOH
479
A
HOH
155
4
HOH
HOH
480
A
HOH
156
4
HOH
HOH
481
A
HOH
157
4
HOH
HOH
482
A
HOH
158
4
HOH
HOH
483
A
HOH
160
4
HOH
HOH
484
A
HOH
163
4
HOH
HOH
485
A
HOH
165
4
HOH
HOH
486
A
HOH
166
4
HOH
HOH
487
A
HOH
167
4
HOH
HOH
488
A
HOH
170
4
HOH
HOH
489
A
HOH
171
4
HOH
HOH
490
A
HOH
172
4
HOH
HOH
491
A
HOH
1
4
HOH
HOH
228
B
HOH
3
4
HOH
HOH
229
B
HOH
4
4
HOH
HOH
230
B
HOH
7
4
HOH
HOH
231
B
HOH
8
4
HOH
HOH
232
B
HOH
9
4
HOH
HOH
233
B
HOH
11
4
HOH
HOH
234
B
HOH
16
4
HOH
HOH
235
B
HOH
17
4
HOH
HOH
236
B
HOH
18
4
HOH
HOH
237
B
HOH
20
4
HOH
HOH
238
B
HOH
22
4
HOH
HOH
239
B
HOH
23
4
HOH
HOH
240
B
HOH
24
4
HOH
HOH
241
B
HOH
27
4
HOH
HOH
242
B
HOH
28
4
HOH
HOH
243
B
HOH
29
4
HOH
HOH
244
B
HOH
30
4
HOH
HOH
245
B
HOH
31
4
HOH
HOH
246
B
HOH
34
4
HOH
HOH
247
B
HOH
36
4
HOH
HOH
248
B
HOH
37
4
HOH
HOH
249
B
HOH
38
4
HOH
HOH
250
B
HOH
39
4
HOH
HOH
251
B
HOH
40
4
HOH
HOH
252
B
HOH
45
4
HOH
HOH
253
B
HOH
49
4
HOH
HOH
254
B
HOH
53
4
HOH
HOH
255
B
HOH
55
4
HOH
HOH
256
B
HOH
57
4
HOH
HOH
257
B
HOH
59
4
HOH
HOH
258
B
HOH
60
4
HOH
HOH
259
B
HOH
63
4
HOH
HOH
260
B
HOH
70
4
HOH
HOH
261
B
HOH
71
4
HOH
HOH
262
B
HOH
75
4
HOH
HOH
263
B
HOH
77
4
HOH
HOH
264
B
HOH
78
4
HOH
HOH
265
B
HOH
81
4
HOH
HOH
266
B
HOH
82
4
HOH
HOH
267
B
HOH
85
4
HOH
HOH
268
B
HOH
86
4
HOH
HOH
269
B
HOH
89
4
HOH
HOH
270
B
HOH
90
4
HOH
HOH
271
B
HOH
92
4
HOH
HOH
272
B
HOH
96
4
HOH
HOH
273
B
HOH
101
4
HOH
HOH
274
B
HOH
102
4
HOH
HOH
275
B
HOH
104
4
HOH
HOH
276
B
HOH
105
4
HOH
HOH
277
B
HOH
108
4
HOH
HOH
278
B
HOH
109
4
HOH
HOH
279
B
HOH
110
4
HOH
HOH
280
B
HOH
112
4
HOH
HOH
281
B
HOH
113
4
HOH
HOH
282
B
HOH
115
4
HOH
HOH
283
B
HOH
119
4
HOH
HOH
284
B
HOH
121
4
HOH
HOH
285
B
HOH
122
4
HOH
HOH
286
B
HOH
126
4
HOH
HOH
287
B
HOH
127
4
HOH
HOH
288
B
HOH
129
4
HOH
HOH
289
B
HOH
130
4
HOH
HOH
290
B
HOH
131
4
HOH
HOH
291
B
HOH
140
4
HOH
HOH
292
B
HOH
141
4
HOH
HOH
293
B
HOH
142
4
HOH
HOH
294
B
HOH
143
4
HOH
HOH
295
B
HOH
146
4
HOH
HOH
296
B
HOH
147
4
HOH
HOH
297
B
HOH
148
4
HOH
HOH
298
B
HOH
150
4
HOH
HOH
299
B
HOH
152
4
HOH
HOH
300
B
HOH
153
4
HOH
HOH
301
B
HOH
154
4
HOH
HOH
302
B
HOH
159
4
HOH
HOH
303
B
HOH
161
4
HOH
HOH
304
B
HOH
162
4
HOH
HOH
305
B
HOH
164
4
HOH
HOH
306
B
HOH
168
4
HOH
HOH
307
B
HOH
169
4
HOH
HOH
308
B
n
1
-2
A
n
2
-1
A
n
3
0
A
ARG
51
n
4
ARG
51
A
GLY
52
n
5
GLY
52
A
CYS
53
n
6
CYS
53
A
THR
54
n
7
THR
54
A
VAL
55
n
8
VAL
55
A
TRP
56
n
9
TRP
56
A
LEU
57
n
10
LEU
57
A
THR
58
n
11
THR
58
A
GLY
59
n
12
GLY
59
A
LEU
60
n
13
LEU
60
A
SER
61
n
14
SER
61
A
GLY
62
n
15
GLY
62
A
ALA
63
n
16
ALA
63
A
GLY
64
n
17
GLY
64
A
LYS
65
n
18
LYS
65
A
THR
66
n
19
THR
66
A
THR
67
n
20
THR
67
A
VAL
68
n
21
VAL
68
A
SER
69
n
22
SER
69
A
MET
70
n
23
MET
70
A
ALA
71
n
24
ALA
71
A
LEU
72
n
25
LEU
72
A
GLU
73
n
26
GLU
73
A
GLU
74
n
27
GLU
74
A
TYR
75
n
28
TYR
75
A
LEU
76
n
29
LEU
76
A
VAL
77
n
30
VAL
77
A
CYS
78
n
31
CYS
78
A
HIS
79
n
32
HIS
79
A
GLY
80
n
33
GLY
80
A
ILE
81
n
34
ILE
81
A
PRO
82
n
35
PRO
82
A
CYS
83
n
36
CYS
83
A
TYR
84
n
37
TYR
84
A
THR
85
n
38
THR
85
A
LEU
86
n
39
LEU
86
A
ASP
87
n
40
ASP
87
A
GLY
88
n
41
GLY
88
A
ASP
89
n
42
ASP
89
A
ASN
90
n
43
ASN
90
A
ILE
91
n
44
ILE
91
A
ARG
92
n
45
ARG
92
A
GLN
93
n
46
GLN
93
A
GLY
94
n
47
GLY
94
A
LEU
95
n
48
LEU
95
A
ASN
96
n
49
ASN
96
A
LYS
97
n
50
LYS
97
A
ASN
98
n
51
ASN
98
A
LEU
99
n
52
LEU
99
A
GLY
100
n
53
GLY
100
A
PHE
101
n
54
PHE
101
A
SER
102
n
55
SER
102
A
PRO
103
n
56
PRO
103
A
GLU
104
n
57
GLU
104
A
ASP
105
n
58
ASP
105
A
ARG
106
n
59
ARG
106
A
GLU
107
n
60
GLU
107
A
GLU
108
n
61
GLU
108
A
ASN
109
n
62
ASN
109
A
VAL
110
n
63
VAL
110
A
ARG
111
n
64
ARG
111
A
ARG
112
n
65
ARG
112
A
ILE
113
n
66
ILE
113
A
ALA
114
n
67
ALA
114
A
GLU
115
n
68
GLU
115
A
VAL
116
n
69
VAL
116
A
ALA
117
n
70
ALA
117
A
LYS
118
n
71
LYS
118
A
LEU
119
n
72
LEU
119
A
PHE
120
n
73
PHE
120
A
ALA
121
n
74
ALA
121
A
ASP
122
n
75
ASP
122
A
ALA
123
n
76
ALA
123
A
GLY
124
n
77
GLY
124
A
LEU
125
n
78
LEU
125
A
VAL
126
n
79
VAL
126
A
CYS
127
n
80
CYS
127
A
ILE
128
n
81
ILE
128
A
THR
129
n
82
THR
129
A
SER
130
n
83
SER
130
A
PHE
131
n
84
PHE
131
A
ILE
132
n
85
ILE
132
A
SER
133
n
86
SER
133
A
PRO
134
n
87
PRO
134
A
TYR
135
n
88
TYR
135
A
THR
136
n
89
THR
136
A
GLN
137
n
90
GLN
137
A
ASP
138
n
91
ASP
138
A
ARG
139
n
92
ARG
139
A
ASN
140
n
93
ASN
140
A
ASN
141
n
94
ASN
141
A
ALA
142
n
95
ALA
142
A
ARG
143
n
96
ARG
143
A
GLN
144
n
97
GLN
144
A
ILE
145
n
98
ILE
145
A
HIS
146
n
99
HIS
146
A
GLU
147
n
100
GLU
147
A
GLY
148
n
101
GLY
148
A
ALA
149
n
102
ALA
149
A
SER
150
n
103
SER
150
A
LEU
151
n
104
LEU
151
A
PRO
152
n
105
PRO
152
A
PHE
153
n
106
PHE
153
A
PHE
154
n
107
PHE
154
A
GLU
155
n
108
GLU
155
A
VAL
156
n
109
VAL
156
A
PHE
157
n
110
PHE
157
A
VAL
158
n
111
VAL
158
A
ASP
159
n
112
ASP
159
A
ALA
160
n
113
ALA
160
A
PRO
161
n
114
PRO
161
A
LEU
162
n
115
LEU
162
A
HIS
163
n
116
HIS
163
A
VAL
164
n
117
VAL
164
A
CYS
165
n
118
CYS
165
A
GLU
166
n
119
GLU
166
A
GLN
167
n
120
GLN
167
A
ARG
168
n
121
ARG
168
A
ASP
169
n
122
ASP
169
A
VAL
170
n
123
VAL
170
A
LYS
171
n
124
LYS
171
A
GLY
172
n
125
GLY
172
A
LEU
173
n
126
LEU
173
A
TYR
174
n
127
TYR
174
A
LYS
175
n
128
LYS
175
A
LYS
176
n
129
LYS
176
A
ALA
177
n
130
ALA
177
A
ARG
178
n
131
ARG
178
A
ALA
179
n
132
ALA
179
A
GLY
180
n
133
GLY
180
A
GLU
181
n
134
GLU
181
A
ILE
182
n
135
ILE
182
A
LYS
183
n
136
LYS
183
A
GLY
184
n
137
GLY
184
A
PHE
185
n
138
PHE
185
A
THR
186
n
139
THR
186
A
GLY
187
n
140
GLY
187
A
ILE
188
n
141
ILE
188
A
ASP
189
n
142
ASP
189
A
SER
190
n
143
SER
190
A
GLU
191
n
144
GLU
191
A
TYR
192
n
145
TYR
192
A
GLU
193
n
146
GLU
193
A
LYS
194
n
147
LYS
194
A
PRO
195
n
148
PRO
195
A
GLU
196
n
149
GLU
196
A
ALA
197
n
150
ALA
197
A
PRO
198
n
151
PRO
198
A
GLU
199
n
152
GLU
199
A
LEU
200
n
153
LEU
200
A
VAL
201
n
154
VAL
201
A
LEU
202
n
155
LEU
202
A
LYS
203
n
156
LYS
203
A
THR
204
n
157
THR
204
A
ASP
205
n
158
ASP
205
A
SER
206
n
159
SER
206
A
CYS
207
n
160
CYS
207
A
ASP
208
n
161
ASP
208
A
VAL
209
n
162
VAL
209
A
ASN
210
n
163
ASN
210
A
ASP
211
n
164
ASP
211
A
CYS
212
n
165
CYS
212
A
VAL
213
n
166
VAL
213
A
GLN
214
n
167
GLN
214
A
GLN
215
n
168
GLN
215
A
VAL
216
n
169
VAL
216
A
VAL
217
n
170
VAL
217
A
GLU
218
n
171
GLU
218
A
LEU
219
n
172
LEU
219
A
LEU
220
n
173
LEU
220
A
GLN
221
n
174
GLN
221
A
GLU
222
n
175
GLU
222
A
ARG
223
n
176
ARG
223
A
ASP
224
n
177
ASP
224
A
ILE
225
n
178
ILE
225
A
VAL
226
n
179
VAL
226
A
n
1
-2
B
n
2
-1
B
n
3
0
B
ARG
51
n
4
ARG
51
B
GLY
52
n
5
GLY
52
B
CYS
53
n
6
CYS
53
B
THR
54
n
7
THR
54
B
VAL
55
n
8
VAL
55
B
TRP
56
n
9
TRP
56
B
LEU
57
n
10
LEU
57
B
THR
58
n
11
THR
58
B
GLY
59
n
12
GLY
59
B
LEU
60
n
13
LEU
60
B
SER
61
n
14
SER
61
B
GLY
62
n
15
GLY
62
B
ALA
63
n
16
ALA
63
B
GLY
64
n
17
GLY
64
B
LYS
65
n
18
LYS
65
B
THR
66
n
19
THR
66
B
THR
67
n
20
THR
67
B
VAL
68
n
21
VAL
68
B
SER
69
n
22
SER
69
B
MET
70
n
23
MET
70
B
ALA
71
n
24
ALA
71
B
LEU
72
n
25
LEU
72
B
GLU
73
n
26
GLU
73
B
GLU
74
n
27
GLU
74
B
TYR
75
n
28
TYR
75
B
LEU
76
n
29
LEU
76
B
VAL
77
n
30
VAL
77
B
CYS
78
n
31
CYS
78
B
HIS
79
n
32
HIS
79
B
GLY
80
n
33
GLY
80
B
ILE
81
n
34
ILE
81
B
PRO
82
n
35
PRO
82
B
CYS
83
n
36
CYS
83
B
TYR
84
n
37
TYR
84
B
THR
85
n
38
THR
85
B
LEU
86
n
39
LEU
86
B
ASP
87
n
40
ASP
87
B
GLY
88
n
41
GLY
88
B
ASP
89
n
42
ASP
89
B
ASN
90
n
43
ASN
90
B
ILE
91
n
44
ILE
91
B
ARG
92
n
45
ARG
92
B
GLN
93
n
46
GLN
93
B
GLY
94
n
47
GLY
94
B
LEU
95
n
48
LEU
95
B
ASN
96
n
49
ASN
96
B
LYS
97
n
50
LYS
97
B
ASN
98
n
51
ASN
98
B
LEU
99
n
52
LEU
99
B
GLY
100
n
53
GLY
100
B
PHE
101
n
54
PHE
101
B
SER
102
n
55
SER
102
B
PRO
103
n
56
PRO
103
B
GLU
104
n
57
GLU
104
B
ASP
105
n
58
ASP
105
B
ARG
106
n
59
ARG
106
B
GLU
107
n
60
GLU
107
B
GLU
108
n
61
GLU
108
B
ASN
109
n
62
ASN
109
B
VAL
110
n
63
VAL
110
B
ARG
111
n
64
ARG
111
B
ARG
112
n
65
ARG
112
B
ILE
113
n
66
ILE
113
B
ALA
114
n
67
ALA
114
B
GLU
115
n
68
GLU
115
B
VAL
116
n
69
VAL
116
B
ALA
117
n
70
ALA
117
B
LYS
118
n
71
LYS
118
B
LEU
119
n
72
LEU
119
B
PHE
120
n
73
PHE
120
B
ALA
121
n
74
ALA
121
B
ASP
122
n
75
ASP
122
B
ALA
123
n
76
ALA
123
B
GLY
124
n
77
GLY
124
B
LEU
125
n
78
LEU
125
B
VAL
126
n
79
VAL
126
B
CYS
127
n
80
CYS
127
B
ILE
128
n
81
ILE
128
B
THR
129
n
82
THR
129
B
SER
130
n
83
SER
130
B
PHE
131
n
84
PHE
131
B
ILE
132
n
85
ILE
132
B
SER
133
n
86
SER
133
B
PRO
134
n
87
PRO
134
B
TYR
135
n
88
TYR
135
B
THR
136
n
89
THR
136
B
GLN
137
n
90
GLN
137
B
ASP
138
n
91
ASP
138
B
ARG
139
n
92
ARG
139
B
ASN
140
n
93
ASN
140
B
ASN
141
n
94
ASN
141
B
ALA
142
n
95
ALA
142
B
ARG
143
n
96
ARG
143
B
GLN
144
n
97
GLN
144
B
ILE
145
n
98
ILE
145
B
HIS
146
n
99
HIS
146
B
GLU
147
n
100
GLU
147
B
GLY
148
n
101
GLY
148
B
ALA
149
n
102
ALA
149
B
SER
150
n
103
SER
150
B
LEU
151
n
104
LEU
151
B
PRO
152
n
105
PRO
152
B
PHE
153
n
106
PHE
153
B
PHE
154
n
107
PHE
154
B
GLU
155
n
108
GLU
155
B
VAL
156
n
109
VAL
156
B
PHE
157
n
110
PHE
157
B
VAL
158
n
111
VAL
158
B
ASP
159
n
112
ASP
159
B
ALA
160
n
113
ALA
160
B
PRO
161
n
114
PRO
161
B
LEU
162
n
115
LEU
162
B
HIS
163
n
116
HIS
163
B
VAL
164
n
117
VAL
164
B
CYS
165
n
118
CYS
165
B
GLU
166
n
119
GLU
166
B
GLN
167
n
120
GLN
167
B
ARG
168
n
121
ARG
168
B
ASP
169
n
122
ASP
169
B
VAL
170
n
123
VAL
170
B
n
124
171
B
n
125
172
B
n
126
173
B
n
127
174
B
n
128
175
B
n
129
176
B
n
130
177
B
n
131
178
B
n
132
179
B
n
133
180
B
n
134
181
B
n
135
182
B
n
136
183
B
n
137
184
B
n
138
185
B
n
139
186
B
n
140
187
B
n
141
188
B
n
142
189
B
n
143
190
B
GLU
191
n
144
GLU
191
B
TYR
192
n
145
TYR
192
B
GLU
193
n
146
GLU
193
B
LYS
194
n
147
LYS
194
B
PRO
195
n
148
PRO
195
B
GLU
196
n
149
GLU
196
B
ALA
197
n
150
ALA
197
B
PRO
198
n
151
PRO
198
B
GLU
199
n
152
GLU
199
B
LEU
200
n
153
LEU
200
B
VAL
201
n
154
VAL
201
B
LEU
202
n
155
LEU
202
B
LYS
203
n
156
LYS
203
B
THR
204
n
157
THR
204
B
ASP
205
n
158
ASP
205
B
SER
206
n
159
SER
206
B
CYS
207
n
160
CYS
207
B
ASP
208
n
161
ASP
208
B
VAL
209
n
162
VAL
209
B
ASN
210
n
163
ASN
210
B
ASP
211
n
164
ASP
211
B
CYS
212
n
165
CYS
212
B
VAL
213
n
166
VAL
213
B
GLN
214
n
167
GLN
214
B
GLN
215
n
168
GLN
215
B
VAL
216
n
169
VAL
216
B
VAL
217
n
170
VAL
217
B
GLU
218
n
171
GLU
218
B
LEU
219
n
172
LEU
219
B
LEU
220
n
173
LEU
220
B
GLN
221
n
174
GLN
221
B
GLU
222
n
175
GLU
222
B
ARG
223
n
176
ARG
223
B
ASP
224
n
177
ASP
224
B
ILE
225
n
178
ILE
225
B
VAL
226
n
179
VAL
226
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
86
A
N
LEU
39
A
O
ILE
128
A
O
ILE
81
A
O
CYS
127
A
O
CYS
80
A
N
CYS
53
A
N
CYS
6
A
N
THR
54
A
N
THR
7
A
O
PHE
154
A
O
PHE
107
A
N
PHE
157
A
N
PHE
110
A
O
LEU
202
A
O
LEU
155
B
N
LEU
86
B
N
LEU
39
B
O
ILE
128
B
O
ILE
81
B
O
CYS
127
B
O
CYS
80
B
N
CYS
53
B
N
CYS
6
B
N
THR
58
B
N
THR
11
B
O
VAL
158
B
O
VAL
111
B
N
PHE
157
B
N
PHE
110
B
O
LEU
202
B
O
LEU
155
1
B
CG
ARG
51
B
CG
ARG
4
1
Y
1
B
CD
ARG
51
B
CD
ARG
4
1
Y
1
B
NE
ARG
51
B
NE
ARG
4
1
Y
1
B
CZ
ARG
51
B
CZ
ARG
4
1
Y
1
B
NH1
ARG
51
B
NH1
ARG
4
1
Y
1
B
NH2
ARG
51
B
NH2
ARG
4
1
Y
1
B
CG
GLU
191
B
CG
GLU
144
1
Y
1
B
CD
GLU
191
B
CD
GLU
144
1
Y
1
B
OE1
GLU
191
B
OE1
GLU
144
1
Y
1
B
OE2
GLU
191
B
OE2
GLU
144
1
Y
1
A
GLY
-2
A
GLY
1
1
Y
1
A
HIS
-1
A
HIS
2
1
Y
1
A
MET
0
A
MET
3
1
Y
1
B
GLY
-2
B
GLY
1
1
Y
1
B
HIS
-1
B
HIS
2
1
Y
1
B
MET
0
B
MET
3
1
Y
1
B
LYS
171
B
LYS
124
1
Y
1
B
GLY
172
B
GLY
125
1
Y
1
B
LEU
173
B
LEU
126
1
Y
1
B
TYR
174
B
TYR
127
1
Y
1
B
LYS
175
B
LYS
128
1
Y
1
B
LYS
176
B
LYS
129
1
Y
1
B
ALA
177
B
ALA
130
1
Y
1
B
ARG
178
B
ARG
131
1
Y
1
B
ALA
179
B
ALA
132
1
Y
1
B
GLY
180
B
GLY
133
1
Y
1
B
GLU
181
B
GLU
134
1
Y
1
B
ILE
182
B
ILE
135
1
Y
1
B
LYS
183
B
LYS
136
1
Y
1
B
GLY
184
B
GLY
137
1
Y
1
B
PHE
185
B
PHE
138
1
Y
1
B
THR
186
B
THR
139
1
Y
1
B
GLY
187
B
GLY
140
1
Y
1
B
ILE
188
B
ILE
141
1
Y
1
B
ASP
189
B
ASP
142
1
Y
1
B
SER
190
B
SER
143
1
Y
1
A
C2'
ADX
400
PLANAR
1
A
C1'
ADX
400
PLANAR
1
A
ASN
98
-96.87
31.56
1
A
SER
133
38.04
66.73
1
A
ASP
169
15.03
70.80
1
A
ALA
197
-143.79
58.99
20.686
3.08
0.00
0.00
-0.78
0.00
-2.29
0.949
0.914
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.25344
0.19869
0.20414
1.88
20.00
2915
26048
10.1
96.56
4.634
0.130
RANDOM
1
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
0.172
0.165
0.80
0.80
1.40
PDB entry 2OFX
MAXIMUM LIKELIHOOD
MASK
1.88
20.00
172
2829
79
0
2578
0.012
0.022
2706
1.487
2.002
3684
5.653
5.000
329
32.917
24.884
129
14.318
15.000
443
16.674
15.000
18
0.091
0.200
413
0.005
0.020
2046
0.201
0.200
1187
0.307
0.200
1835
0.146
0.200
181
0.171
0.200
47
0.155
0.200
10
0.854
1.500
1691
1.418
2.000
2658
2.157
3.000
1147
3.327
4.500
1026
0.389
0.332
1.933
159
1325
20
69.15
24.6
1.88
20
2PEY
30062
29201
0
0
0.086
8.4
1
16.63
6.9
97
0.388
1.88
2.0
4.14
3922
38.7
5.4
82.6
refinement
REFMAC
5.2.0019
data collection
HKL-2000
data reduction
XDS
phasing
MOLREP
Crystal structure of deletion mutant of APS-kinase domain of human PAPS-synthetase 1
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
GLY
64
A
GLY
17
HELX_P
A
HIS
79
A
HIS
32
1
1
16
A
GLY
88
A
GLY
41
HELX_P
A
ARG
92
A
ARG
45
1
2
5
A
SER
102
A
SER
55
HELX_P
A
ALA
123
A
ALA
76
1
3
22
A
TYR
135
A
TYR
88
HELX_P
A
ALA
149
A
ALA
102
1
4
15
A
PRO
161
A
PRO
114
HELX_P
A
ASP
169
A
ASP
122
1
5
9
A
GLY
172
A
GLY
125
HELX_P
A
ALA
179
A
ALA
132
1
6
8
A
ASP
208
A
ASP
161
HELX_P
A
ARG
223
A
ARG
176
1
7
16
B
GLY
64
B
GLY
17
HELX_P
B
HIS
79
B
HIS
32
1
8
16
B
ASP
87
B
ASP
40
HELX_P
B
ARG
92
B
ARG
45
1
9
6
B
SER
102
B
SER
55
HELX_P
B
GLY
124
B
GLY
77
1
10
23
B
TYR
135
B
TYR
88
HELX_P
B
GLY
148
B
GLY
101
1
11
14
B
PRO
161
B
PRO
114
HELX_P
B
ASP
169
B
ASP
122
1
12
9
B
ASP
208
B
ASP
161
HELX_P
B
ARG
223
B
ARG
176
1
13
16
TRANSFERASE
protein-nucleic acid complex, NMP-kinase fold, TRANSFERASE
PAPS1_HUMAN
UNP
1
51
O43252
RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS
FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVN
DCVQQVVELLQERDIV
51
226
2PEY
51
226
O43252
A
1
4
179
51
226
2PEY
51
226
O43252
B
1
4
179
1
cloning artifact
GLY
-2
2PEY
A
O43252
UNP
1
1
cloning artifact
HIS
-1
2PEY
A
O43252
UNP
2
1
cloning artifact
MET
0
2PEY
A
O43252
UNP
3
2
cloning artifact
GLY
-2
2PEY
B
O43252
UNP
1
2
cloning artifact
HIS
-1
2PEY
B
O43252
UNP
2
2
cloning artifact
MET
0
2PEY
B
O43252
UNP
3
5
5
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
CYS
83
A
CYS
36
A
ASP
87
A
ASP
40
A
VAL
126
A
VAL
79
A
SER
130
A
SER
83
A
CYS
53
A
CYS
6
A
THR
58
A
THR
11
A
PHE
153
A
PHE
106
A
VAL
158
A
VAL
111
A
LEU
200
A
LEU
153
A
LEU
202
A
LEU
155
B
CYS
83
B
CYS
36
B
LEU
86
B
LEU
39
B
VAL
126
B
VAL
79
B
SER
130
B
SER
83
B
CYS
53
B
CYS
6
B
THR
58
B
THR
11
B
PHE
153
B
PHE
106
B
ASP
159
B
ASP
112
B
LEU
200
B
LEU
153
B
LYS
203
B
LYS
156
BINDING SITE FOR RESIDUE ADX A 400
A
ADX
400
Software
16
BINDING SITE FOR RESIDUE DAT A 300
A
DAT
300
Software
18
BINDING SITE FOR RESIDUE DAT B 227
B
DAT
227
Software
19
A
ARG
92
A
ARG
45
16
1_555
A
PHE
101
A
PHE
54
16
1_555
A
ARG
106
A
ARG
59
16
1_555
A
ASN
109
A
ASN
62
16
1_555
A
PHE
131
A
PHE
84
16
1_555
A
ILE
132
A
ILE
85
16
1_555
A
SER
133
A
SER
86
16
1_555
A
PRO
134
A
PRO
87
16
1_555
A
LEU
173
A
LEU
126
16
1_555
A
GLY
184
A
GLY
137
16
1_555
A
PHE
185
A
PHE
138
16
1_555
A
THR
186
A
THR
139
16
1_555
A
HOH
414
F
HOH
16
1_555
A
HOH
419
F
HOH
16
1_555
A
HOH
444
F
HOH
16
1_555
A
HOH
459
F
HOH
16
1_555
A
LEU
60
A
LEU
13
18
1_555
A
GLY
62
A
GLY
15
18
1_555
A
ALA
63
A
ALA
16
18
1_555
A
GLY
64
A
GLY
17
18
1_555
A
LYS
65
A
LYS
18
18
1_555
A
THR
66
A
THR
19
18
1_555
A
THR
67
A
THR
20
18
1_555
A
ARG
168
A
ARG
121
18
1_555
A
THR
204
A
THR
157
18
1_555
A
CYS
207
A
CYS
160
18
1_555
A
ASP
208
A
ASP
161
18
1_555
A
VAL
209
A
VAL
162
18
1_555
A
HOH
414
F
HOH
18
1_555
A
HOH
432
F
HOH
18
1_555
A
HOH
443
F
HOH
18
1_555
A
HOH
452
F
HOH
18
1_555
B
HIS
163
B
HIS
116
18
2_555
B
GLN
167
B
GLN
120
18
2_555
A
HIS
163
A
HIS
116
19
2_554
A
GLN
167
A
GLN
120
19
2_554
B
LEU
60
B
LEU
13
19
1_555
B
GLY
62
B
GLY
15
19
1_555
B
ALA
63
B
ALA
16
19
1_555
B
GLY
64
B
GLY
17
19
1_555
B
LYS
65
B
LYS
18
19
1_555
B
THR
66
B
THR
19
19
1_555
B
THR
67
B
THR
20
19
1_555
B
VAL
68
B
VAL
21
19
1_555
B
ARG
168
B
ARG
121
19
1_555
B
VAL
170
B
VAL
123
19
1_555
B
THR
204
B
THR
157
19
1_555
B
CYS
207
B
CYS
160
19
1_555
B
ASP
208
B
ASP
161
19
1_555
B
VAL
209
B
VAL
162
19
1_555
B
HOH
251
G
HOH
19
1_555
B
HOH
263
G
HOH
19
1_555
B
HOH
277
G
HOH
19
1_555
19
P 21 21 21