data_2PL8 # _entry.id 2PL8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PL8 pdb_00002pl8 10.2210/pdb2pl8/pdb NDB AD0069 ? ? RCSB RCSB042501 ? ? WWPDB D_1000042501 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 115D 'D-(GG[Br]UA[Br]UACC), with the two Br replacing THY methyl groups' unspecified PDB 1VJ4 'D-(GGTATACC) initial structure' unspecified PDB 2PKV 'D-(GGTATACC) ambient pressure' unspecified PDB 2PL4 'D-(GGTATACC) under 0.55 GPA hydrostatic pressure' unspecified PDB 2PLB 'D-(GGTATACC) at 1.39 GPA hydrostatic pressure' unspecified PDB 2PLO 'D-(GTATACC) LOW TEMPERATURE (100K)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PL8 _pdbx_database_status.recvd_initial_deposition_date 2007-04-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Prange, T.' 1 'Girard, E.' 2 'Fourme, R.' 3 'Kahn, R.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Adaptation of the base-paired double-helix molecular architecture to extreme pressure.' 'Nucleic Acids Res.' 35 4800 4808 2007 NARHAD UK 0305-1048 0389 ? 17617642 10.1093/nar/gkm511 1 'Coexistence of A-and B-Form DNA in a Single Crystal Lattice' Nature 337 190 193 1989 NATUAS UK 0028-0836 0006 ? 2911354 10.1038/337190a0 2 'High-pressure protein crystallography (HPPX): Instrumentation, methodology and results on lysozyme crystals' 'J.Synchrotron Radia.' 8 1149 1156 2001 JSYRES DK 0909-0495 1210 ? 11524565 10.1107/S0909049501011037 3 ;High pressure macromolecular crystallography: The 140 MPa crystal structure at 2.3 A resolution of urate oxidase, A 135 KD tetrameric assembly ; 'BIOCHEM.BIOPHYS.ACTA PROTEINS & PROTEOMICS' 1764 391 397 2006 ? NE 1570-9639 ? ? 16478683 10.1016/j.bbapap.2006.01.006 4 'Crystal structure of hen egg-white lysozyme at a hydrostatic pressure of 1000 atmospheres.' J.Mol.Biol. 193 157 170 1987 JMOBAK UK 0022-2836 0070 ? 3586017 '10.1016/0022-2836(87)90634-6' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Girard, E.' 1 ? primary 'Prange, T.' 2 ? primary 'Dhaussy, A.C.' 3 ? primary 'Migianu-Griffoni, E.' 4 ? primary 'Lecouvey, M.' 5 ? primary 'Chervin, J.C.' 6 ? primary 'Mezouar, M.' 7 ? primary 'Kahn, R.' 8 ? primary 'Fourme, R.' 9 ? 1 'Doucet, J.' 10 ? 1 'Benoit, J.-P.' 11 ? 1 'Cruse, W.B.T.' 12 ? 1 'Prange, T.' 13 ? 1 'Kennard, O.' 14 ? 2 'Fourme, R.' 15 ? 2 'Kahn, R.' 16 ? 2 'Mezouar, M.' 17 ? 2 'Girard, E.' 18 ? 2 'Horentrup, C.' 19 ? 2 'Prange, T.' 20 ? 2 'Ascone, I.' 21 ? 3 ;Colloc'h, N. ; 22 ? 3 'Girard, E.' 23 ? 3 'Dhaussy, A.C.' 24 ? 3 'Kahn, R.' 25 ? 3 'Ascone, I.' 26 ? 3 'Mezouar, M.' 27 ? 3 'Fourme, R.' 28 ? 4 'Kundrot, C.E.' 29 ? 4 'Richards, F.M.' 30 ? # _cell.entry_id 2PL8 _cell.length_a 43.423 _cell.length_b 43.423 _cell.length_c 40.450 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PL8 _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*DGP*DGP*DTP*DAP*DTP*DAP*DCP*DC)-3'" 2426.617 2 ? ? ? ? 2 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 3 water nat water 18.015 74 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DT)(DA)(DT)(DA)(DC)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GGTATACC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DT n 1 6 DA n 1 7 DC n 1 8 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'synthetic DNA octamer' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2PL8 _struct_ref.pdbx_db_accession 2PL8 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2PL8 A 1 ? 8 ? 2PL8 1 ? 8 ? 1 8 2 1 2PL8 B 1 ? 8 ? 2PL8 11 ? 18 ? 11 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # _exptl.entry_id 2PL8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_percent_sol 43.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details ;20 mg of DNA dissolved in 0.2 ml of 15% MPD solution cacodylate buffer 10-2 M. Additives: 10-5 M sodium azide, 10-2 M MgCl2, 2.10-2 M spermine chloride. Reservoir: same solution but 50 % MPD, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 290K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'cacodylate buffer' ? ? ? 1 3 1 'sodium azide' ? ? ? 1 4 1 MgCl2 ? ? ? 1 5 1 'spermine chloride' ? ? ? 1 6 2 MPD ? ? ? 1 7 2 'cacodylate buffer' ? ? ? 1 8 2 'sodium azide' ? ? ? 1 9 2 MgCl2 ? ? ? 1 10 2 'spermine chloride' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 295 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2006-11-10 _diffrn_detector.details '2 crystals, parallel beam' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.3738 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID27' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID27 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.3738 # _reflns.entry_id 2PL8 _reflns.observed_criterion_sigma_I 4 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 18.0 _reflns.d_resolution_high 1.65 _reflns.number_obs 5018 _reflns.number_all 5079 _reflns.percent_possible_obs 89.4 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.2 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.75 _reflns_shell.percent_possible_all 90.27 _reflns_shell.Rmerge_I_obs 0.251 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.9 _reflns_shell.pdbx_redundancy 3.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 733 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2PL8 _refine.ls_number_reflns_obs 5018 _refine.ls_number_reflns_all 5079 _refine.pdbx_ls_sigma_I 4 _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.65 _refine.ls_percent_reflns_obs 90.5 _refine.ls_R_factor_obs 0.1892 _refine.ls_R_factor_all 0.2061 _refine.ls_R_factor_R_work 0.1801 _refine.ls_R_factor_R_free 0.221 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 377 _refine.ls_number_parameters 1671 _refine.ls_number_restraints 1688 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model 2PL4 _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model 'indiidual atom restrained B factors' _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2PL8 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 184.00 _refine_analyze.occupancy_sum_non_hydrogen 406.80 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 322 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 74 _refine_hist.number_atoms_total 410 _refine_hist.d_res_high 1.65 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d .009 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d .027 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist .000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes .0010 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol .000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol .007 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr .018 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt .000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt .061 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps .000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 2PL8 _pdbx_refine.R_factor_all_no_cutoff 0.2061 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.1933 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1892 _pdbx_refine.free_R_factor_4sig_cutoff 0.221 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 8 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 378 _pdbx_refine.number_reflns_obs_4sig_cutoff 4171 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 2PL8 _struct.title 'D(GTATACC) under hydrostatic pressure of 1.04 GPa' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PL8 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, HIGH-PRESSURE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 1 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 1 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 1 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 2 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 2 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 2 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 3 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 3 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 4 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 4 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 5 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 5 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 6 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 6 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 7 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 7 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 7 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 8 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 8 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 8 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id SPM _struct_site.pdbx_auth_seq_id 20 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE SPM B 20' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 DT B 5 ? DT B 15 . ? 1_555 ? 2 AC1 2 DA B 6 ? DA B 16 . ? 1_555 ? # _database_PDB_matrix.entry_id 2PL8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 2PL8 _atom_sites.fract_transf_matrix[1][1] 0.023029 _atom_sites.fract_transf_matrix[1][2] 0.013296 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026592 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024722 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 22.744 19.993 -9.765 1.00 36.05 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 23.751 19.135 -9.211 1.00 29.57 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 24.982 19.172 -10.090 1.00 26.04 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 25.420 20.545 -10.307 1.00 21.89 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 26.221 18.502 -9.537 1.00 19.41 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 26.202 17.097 -9.692 1.00 23.88 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 27.311 19.174 -10.369 1.00 21.62 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 26.836 20.612 -10.306 1.00 20.59 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 27.323 21.310 -9.092 1.00 21.72 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 26.570 21.697 -8.013 1.00 30.23 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 27.271 22.295 -7.086 1.00 28.90 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 28.565 22.299 -7.590 1.00 22.57 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 29.751 22.814 -7.021 1.00 23.11 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 29.870 23.383 -5.923 1.00 21.10 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 30.849 22.616 -7.854 1.00 16.42 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 30.810 22.000 -9.082 1.00 15.37 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 31.979 21.916 -9.715 1.00 12.51 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 29.702 21.515 -9.618 1.00 16.54 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 28.617 21.691 -8.834 1.00 23.63 ? 1 DG A C4 1 ATOM 20 P P . DG A 1 2 ? 26.934 16.051 -8.735 1.00 31.05 ? 2 DG A P 1 ATOM 21 O OP1 . DG A 1 2 ? 26.595 14.686 -9.224 1.00 38.25 ? 2 DG A OP1 1 ATOM 22 O OP2 . DG A 1 2 ? 26.635 16.410 -7.319 1.00 29.37 ? 2 DG A OP2 1 ATOM 23 O "O5'" . DG A 1 2 ? 28.505 16.256 -8.938 1.00 22.89 ? 2 DG A "O5'" 1 ATOM 24 C "C5'" . DG A 1 2 ? 29.113 16.016 -10.208 1.00 20.80 ? 2 DG A "C5'" 1 ATOM 25 C "C4'" . DG A 1 2 ? 30.502 16.607 -10.242 1.00 17.40 ? 2 DG A "C4'" 1 ATOM 26 O "O4'" . DG A 1 2 ? 30.460 18.010 -9.868 1.00 17.29 ? 2 DG A "O4'" 1 ATOM 27 C "C3'" . DG A 1 2 ? 31.484 15.989 -9.275 1.00 17.86 ? 2 DG A "C3'" 1 ATOM 28 O "O3'" . DG A 1 2 ? 32.081 14.821 -9.837 1.00 20.93 ? 2 DG A "O3'" 1 ATOM 29 C "C2'" . DG A 1 2 ? 32.485 17.093 -9.037 1.00 20.83 ? 2 DG A "C2'" 1 ATOM 30 C "C1'" . DG A 1 2 ? 31.661 18.346 -9.197 1.00 18.29 ? 2 DG A "C1'" 1 ATOM 31 N N9 . DG A 1 2 ? 31.250 18.965 -7.910 1.00 14.97 ? 2 DG A N9 1 ATOM 32 C C8 . DG A 1 2 ? 30.008 19.044 -7.330 1.00 13.45 ? 2 DG A C8 1 ATOM 33 N N7 . DG A 1 2 ? 30.034 19.674 -6.175 1.00 15.47 ? 2 DG A N7 1 ATOM 34 C C5 . DG A 1 2 ? 31.370 20.023 -5.997 1.00 15.73 ? 2 DG A C5 1 ATOM 35 C C6 . DG A 1 2 ? 32.027 20.716 -4.950 1.00 15.14 ? 2 DG A C6 1 ATOM 36 O O6 . DG A 1 2 ? 31.504 21.166 -3.936 1.00 15.89 ? 2 DG A O6 1 ATOM 37 N N1 . DG A 1 2 ? 33.389 20.863 -5.160 1.00 17.18 ? 2 DG A N1 1 ATOM 38 C C2 . DG A 1 2 ? 34.048 20.389 -6.266 1.00 22.02 ? 2 DG A C2 1 ATOM 39 N N2 . DG A 1 2 ? 35.363 20.615 -6.311 1.00 15.73 ? 2 DG A N2 1 ATOM 40 N N3 . DG A 1 2 ? 33.456 19.738 -7.259 1.00 21.09 ? 2 DG A N3 1 ATOM 41 C C4 . DG A 1 2 ? 32.138 19.594 -7.062 1.00 18.60 ? 2 DG A C4 1 ATOM 42 P P . DT A 1 3 ? 32.736 13.751 -8.858 1.00 27.13 ? 3 DT A P 1 ATOM 43 O OP1 . DT A 1 3 ? 33.115 12.554 -9.637 1.00 47.41 ? 3 DT A OP1 1 ATOM 44 O OP2 . DT A 1 3 ? 31.835 13.586 -7.673 1.00 24.56 ? 3 DT A OP2 1 ATOM 45 O "O5'" . DT A 1 3 ? 34.057 14.467 -8.331 1.00 29.81 ? 3 DT A "O5'" 1 ATOM 46 C "C5'" . DT A 1 3 ? 35.301 14.517 -9.032 1.00 30.19 ? 3 DT A "C5'" 1 ATOM 47 C "C4'" . DT A 1 3 ? 36.360 15.073 -8.118 1.00 27.25 ? 3 DT A "C4'" 1 ATOM 48 O "O4'" . DT A 1 3 ? 36.004 16.445 -7.760 1.00 20.78 ? 3 DT A "O4'" 1 ATOM 49 C "C3'" . DT A 1 3 ? 36.542 14.383 -6.781 1.00 31.08 ? 3 DT A "C3'" 1 ATOM 50 O "O3'" . DT A 1 3 ? 37.253 13.153 -6.869 1.00 35.49 ? 3 DT A "O3'" 1 ATOM 51 C "C2'" . DT A 1 3 ? 37.308 15.457 -6.032 1.00 23.88 ? 3 DT A "C2'" 1 ATOM 52 C "C1'" . DT A 1 3 ? 36.531 16.694 -6.453 1.00 22.99 ? 3 DT A "C1'" 1 ATOM 53 N N1 . DT A 1 3 ? 35.381 17.048 -5.580 1.00 16.68 ? 3 DT A N1 1 ATOM 54 C C2 . DT A 1 3 ? 35.672 17.873 -4.501 1.00 15.34 ? 3 DT A C2 1 ATOM 55 O O2 . DT A 1 3 ? 36.797 18.284 -4.273 1.00 17.57 ? 3 DT A O2 1 ATOM 56 N N3 . DT A 1 3 ? 34.579 18.168 -3.740 1.00 13.70 ? 3 DT A N3 1 ATOM 57 C C4 . DT A 1 3 ? 33.278 17.760 -3.905 1.00 17.25 ? 3 DT A C4 1 ATOM 58 O O4 . DT A 1 3 ? 32.412 18.116 -3.122 1.00 18.25 ? 3 DT A O4 1 ATOM 59 C C5 . DT A 1 3 ? 33.036 16.897 -5.059 1.00 15.42 ? 3 DT A C5 1 ATOM 60 C C7 . DT A 1 3 ? 31.638 16.429 -5.283 1.00 19.17 ? 3 DT A C7 1 ATOM 61 C C6 . DT A 1 3 ? 34.098 16.606 -5.805 1.00 14.60 ? 3 DT A C6 1 ATOM 62 P P . DA A 1 4 ? 37.212 12.122 -5.632 1.00 40.73 ? 4 DA A P 1 ATOM 63 O OP1 . DA A 1 4 ? 38.101 10.985 -5.966 1.00 48.07 ? 4 DA A OP1 1 ATOM 64 O OP2 . DA A 1 4 ? 35.786 11.864 -5.289 1.00 35.44 ? 4 DA A OP2 1 ATOM 65 O "O5'" . DA A 1 4 ? 37.859 12.945 -4.422 1.00 33.35 ? 4 DA A "O5'" 1 ATOM 66 C "C5'" . DA A 1 4 ? 39.262 13.190 -4.335 1.00 21.86 ? 4 DA A "C5'" 1 ATOM 67 C "C4'" . DA A 1 4 ? 39.588 14.172 -3.239 1.00 12.56 ? 4 DA A "C4'" 1 ATOM 68 O "O4'" . DA A 1 4 ? 38.755 15.345 -3.278 1.00 14.51 ? 4 DA A "O4'" 1 ATOM 69 C "C3'" . DA A 1 4 ? 39.344 13.644 -1.830 1.00 20.18 ? 4 DA A "C3'" 1 ATOM 70 O "O3'" . DA A 1 4 ? 40.422 12.817 -1.434 1.00 18.81 ? 4 DA A "O3'" 1 ATOM 71 C "C2'" . DA A 1 4 ? 39.209 14.903 -1.005 1.00 19.34 ? 4 DA A "C2'" 1 ATOM 72 C "C1'" . DA A 1 4 ? 38.478 15.824 -1.963 1.00 16.66 ? 4 DA A "C1'" 1 ATOM 73 N N9 . DA A 1 4 ? 37.011 15.856 -1.791 1.00 16.32 ? 4 DA A N9 1 ATOM 74 C C8 . DA A 1 4 ? 36.067 15.236 -2.565 1.00 13.28 ? 4 DA A C8 1 ATOM 75 N N7 . DA A 1 4 ? 34.844 15.455 -2.155 1.00 16.05 ? 4 DA A N7 1 ATOM 76 C C5 . DA A 1 4 ? 34.995 16.268 -1.040 1.00 15.64 ? 4 DA A C5 1 ATOM 77 C C6 . DA A 1 4 ? 34.031 16.830 -0.178 1.00 14.95 ? 4 DA A C6 1 ATOM 78 N N6 . DA A 1 4 ? 32.724 16.628 -0.341 1.00 14.61 ? 4 DA A N6 1 ATOM 79 N N1 . DA A 1 4 ? 34.468 17.594 0.846 1.00 14.43 ? 4 DA A N1 1 ATOM 80 C C2 . DA A 1 4 ? 35.782 17.751 0.948 1.00 15.75 ? 4 DA A C2 1 ATOM 81 N N3 . DA A 1 4 ? 36.800 17.284 0.212 1.00 14.73 ? 4 DA A N3 1 ATOM 82 C C4 . DA A 1 4 ? 36.327 16.527 -0.798 1.00 15.29 ? 4 DA A C4 1 ATOM 83 P P . DT A 1 5 ? 40.242 11.690 -0.301 1.00 21.95 ? 5 DT A P 1 ATOM 84 O OP1 . DT A 1 5 ? 41.562 11.001 -0.240 1.00 21.82 ? 5 DT A OP1 1 ATOM 85 O OP2 . DT A 1 5 ? 38.995 10.934 -0.586 1.00 18.32 ? 5 DT A OP2 1 ATOM 86 O "O5'" . DT A 1 5 ? 39.980 12.535 1.013 1.00 21.16 ? 5 DT A "O5'" 1 ATOM 87 C "C5'" . DT A 1 5 ? 40.964 13.315 1.684 1.00 23.15 ? 5 DT A "C5'" 1 ATOM 88 C "C4'" . DT A 1 5 ? 40.336 14.110 2.801 1.00 19.48 ? 5 DT A "C4'" 1 ATOM 89 O "O4'" . DT A 1 5 ? 39.351 15.036 2.286 1.00 18.67 ? 5 DT A "O4'" 1 ATOM 90 C "C3'" . DT A 1 5 ? 39.552 13.303 3.830 1.00 18.12 ? 5 DT A "C3'" 1 ATOM 91 O "O3'" . DT A 1 5 ? 40.429 12.617 4.714 1.00 19.52 ? 5 DT A "O3'" 1 ATOM 92 C "C2'" . DT A 1 5 ? 38.723 14.401 4.459 1.00 11.60 ? 5 DT A "C2'" 1 ATOM 93 C "C1'" . DT A 1 5 ? 38.329 15.236 3.255 1.00 21.88 ? 5 DT A "C1'" 1 ATOM 94 N N1 . DT A 1 5 ? 37.017 14.849 2.684 1.00 13.92 ? 5 DT A N1 1 ATOM 95 C C2 . DT A 1 5 ? 35.880 15.406 3.222 1.00 17.90 ? 5 DT A C2 1 ATOM 96 O O2 . DT A 1 5 ? 35.841 16.210 4.132 1.00 19.94 ? 5 DT A O2 1 ATOM 97 N N3 . DT A 1 5 ? 34.703 15.003 2.645 1.00 12.75 ? 5 DT A N3 1 ATOM 98 C C4 . DT A 1 5 ? 34.557 14.109 1.605 1.00 10.50 ? 5 DT A C4 1 ATOM 99 O O4 . DT A 1 5 ? 33.398 13.881 1.234 1.00 13.40 ? 5 DT A O4 1 ATOM 100 C C5 . DT A 1 5 ? 35.778 13.570 1.105 1.00 12.18 ? 5 DT A C5 1 ATOM 101 C C7 . DT A 1 5 ? 35.721 12.587 -0.023 1.00 17.84 ? 5 DT A C7 1 ATOM 102 C C6 . DT A 1 5 ? 36.949 13.944 1.648 1.00 16.79 ? 5 DT A C6 1 ATOM 103 P P . DA A 1 6 ? 39.952 11.373 5.594 1.00 23.44 ? 6 DA A P 1 ATOM 104 O OP1 . DA A 1 6 ? 41.135 10.761 6.239 1.00 27.75 ? 6 DA A OP1 1 ATOM 105 O OP2 . DA A 1 6 ? 39.040 10.502 4.805 1.00 21.43 ? 6 DA A OP2 1 ATOM 106 O "O5'" . DA A 1 6 ? 39.037 12.038 6.721 1.00 21.45 ? 6 DA A "O5'" 1 ATOM 107 C "C5'" . DA A 1 6 ? 39.532 13.055 7.609 1.00 19.46 ? 6 DA A "C5'" 1 ATOM 108 C "C4'" . DA A 1 6 ? 38.365 13.479 8.470 1.00 22.80 ? 6 DA A "C4'" 1 ATOM 109 O "O4'" . DA A 1 6 ? 37.436 14.322 7.769 1.00 19.12 ? 6 DA A "O4'" 1 ATOM 110 C "C3'" . DA A 1 6 ? 37.524 12.299 8.923 1.00 30.59 ? 6 DA A "C3'" 1 ATOM 111 O "O3'" . DA A 1 6 ? 38.112 11.630 10.025 1.00 46.69 ? 6 DA A "O3'" 1 ATOM 112 C "C2'" . DA A 1 6 ? 36.220 12.974 9.273 1.00 26.99 ? 6 DA A "C2'" 1 ATOM 113 C "C1'" . DA A 1 6 ? 36.110 14.007 8.190 1.00 19.47 ? 6 DA A "C1'" 1 ATOM 114 N N9 . DA A 1 6 ? 35.383 13.563 6.978 1.00 17.67 ? 6 DA A N9 1 ATOM 115 C C8 . DA A 1 6 ? 35.816 12.881 5.877 1.00 18.36 ? 6 DA A C8 1 ATOM 116 N N7 . DA A 1 6 ? 34.864 12.670 4.999 1.00 14.46 ? 6 DA A N7 1 ATOM 117 C C5 . DA A 1 6 ? 33.734 13.247 5.557 1.00 10.57 ? 6 DA A C5 1 ATOM 118 C C6 . DA A 1 6 ? 32.399 13.382 5.161 1.00 12.31 ? 6 DA A C6 1 ATOM 119 N N6 . DA A 1 6 ? 31.955 12.887 3.990 1.00 16.01 ? 6 DA A N6 1 ATOM 120 N N1 . DA A 1 6 ? 31.541 14.025 5.983 1.00 14.65 ? 6 DA A N1 1 ATOM 121 C C2 . DA A 1 6 ? 31.991 14.517 7.151 1.00 19.75 ? 6 DA A C2 1 ATOM 122 N N3 . DA A 1 6 ? 33.235 14.453 7.637 1.00 16.19 ? 6 DA A N3 1 ATOM 123 C C4 . DA A 1 6 ? 34.043 13.807 6.792 1.00 15.24 ? 6 DA A C4 1 ATOM 124 P P . DC A 1 7 ? 37.419 10.307 10.631 1.00 49.74 ? 7 DC A P 1 ATOM 125 O OP1 . DC A 1 7 ? 38.030 10.108 11.962 1.00 38.10 ? 7 DC A OP1 1 ATOM 126 O OP2 . DC A 1 7 ? 37.467 9.265 9.562 1.00 37.46 ? 7 DC A OP2 1 ATOM 127 O "O5'" . DC A 1 7 ? 35.880 10.679 10.832 1.00 34.54 ? 7 DC A "O5'" 1 ATOM 128 C "C5'" . DC A 1 7 ? 35.321 10.949 12.113 1.00 24.16 ? 7 DC A "C5'" 1 ATOM 129 C "C4'" . DC A 1 7 ? 33.892 11.426 12.016 1.00 18.00 ? 7 DC A "C4'" 1 ATOM 130 O "O4'" . DC A 1 7 ? 33.651 12.079 10.744 1.00 18.61 ? 7 DC A "O4'" 1 ATOM 131 C "C3'" . DC A 1 7 ? 32.838 10.329 12.085 1.00 12.47 ? 7 DC A "C3'" 1 ATOM 132 O "O3'" . DC A 1 7 ? 32.514 10.053 13.451 1.00 19.02 ? 7 DC A "O3'" 1 ATOM 133 C "C2'" . DC A 1 7 ? 31.666 10.869 11.309 1.00 11.19 ? 7 DC A "C2'" 1 ATOM 134 C "C1'" . DC A 1 7 ? 32.310 11.808 10.337 1.00 13.80 ? 7 DC A "C1'" 1 ATOM 135 N N1 . DC A 1 7 ? 32.400 11.238 8.960 1.00 14.08 ? 7 DC A N1 1 ATOM 136 C C2 . DC A 1 7 ? 31.255 11.307 8.171 1.00 15.07 ? 7 DC A C2 1 ATOM 137 O O2 . DC A 1 7 ? 30.244 11.832 8.648 1.00 14.09 ? 7 DC A O2 1 ATOM 138 N N3 . DC A 1 7 ? 31.337 10.788 6.919 1.00 11.48 ? 7 DC A N3 1 ATOM 139 C C4 . DC A 1 7 ? 32.460 10.242 6.490 1.00 14.26 ? 7 DC A C4 1 ATOM 140 N N4 . DC A 1 7 ? 32.499 9.737 5.241 1.00 15.28 ? 7 DC A N4 1 ATOM 141 C C5 . DC A 1 7 ? 33.643 10.159 7.286 1.00 21.34 ? 7 DC A C5 1 ATOM 142 C C6 . DC A 1 7 ? 33.547 10.679 8.525 1.00 11.78 ? 7 DC A C6 1 ATOM 143 P P . DC A 1 8 ? 32.174 8.538 13.870 1.00 18.84 ? 8 DC A P 1 ATOM 144 O OP1 . DC A 1 8 ? 31.975 8.540 15.361 1.00 23.27 ? 8 DC A OP1 1 ATOM 145 O OP2 . DC A 1 8 ? 33.175 7.640 13.287 1.00 17.65 ? 8 DC A OP2 1 ATOM 146 O "O5'" . DC A 1 8 ? 30.757 8.278 13.220 1.00 17.61 ? 8 DC A "O5'" 1 ATOM 147 C "C5'" . DC A 1 8 ? 29.533 8.768 13.775 1.00 16.52 ? 8 DC A "C5'" 1 ATOM 148 C "C4'" . DC A 1 8 ? 28.390 8.353 12.902 1.00 19.76 ? 8 DC A "C4'" 1 ATOM 149 O "O4'" . DC A 1 8 ? 28.555 9.046 11.615 1.00 17.81 ? 8 DC A "O4'" 1 ATOM 150 C "C3'" . DC A 1 8 ? 28.263 6.903 12.492 1.00 23.69 ? 8 DC A "C3'" 1 ATOM 151 O "O3'" . DC A 1 8 ? 27.755 6.073 13.527 1.00 18.02 ? 8 DC A "O3'" 1 ATOM 152 C "C2'" . DC A 1 8 ? 27.305 7.023 11.321 1.00 17.97 ? 8 DC A "C2'" 1 ATOM 153 C "C1'" . DC A 1 8 ? 27.755 8.326 10.689 1.00 15.23 ? 8 DC A "C1'" 1 ATOM 154 N N1 . DC A 1 8 ? 28.583 8.109 9.483 1.00 14.12 ? 8 DC A N1 1 ATOM 155 C C2 . DC A 1 8 ? 27.878 7.897 8.286 1.00 16.91 ? 8 DC A C2 1 ATOM 156 O O2 . DC A 1 8 ? 26.645 7.910 8.335 1.00 16.96 ? 8 DC A O2 1 ATOM 157 N N3 . DC A 1 8 ? 28.602 7.697 7.175 1.00 10.38 ? 8 DC A N3 1 ATOM 158 C C4 . DC A 1 8 ? 29.921 7.701 7.224 1.00 15.28 ? 8 DC A C4 1 ATOM 159 N N4 . DC A 1 8 ? 30.579 7.492 6.079 1.00 13.82 ? 8 DC A N4 1 ATOM 160 C C5 . DC A 1 8 ? 30.669 7.912 8.431 1.00 14.85 ? 8 DC A C5 1 ATOM 161 C C6 . DC A 1 8 ? 29.935 8.112 9.530 1.00 14.47 ? 8 DC A C6 1 ATOM 162 O "O5'" . DG B 1 1 ? 25.594 5.348 -2.216 1.00 40.72 ? 11 DG B "O5'" 1 ATOM 163 C "C5'" . DG B 1 1 ? 24.250 5.780 -2.508 1.00 27.79 ? 11 DG B "C5'" 1 ATOM 164 C "C4'" . DG B 1 1 ? 23.475 6.035 -1.236 1.00 24.09 ? 11 DG B "C4'" 1 ATOM 165 O "O4'" . DG B 1 1 ? 23.909 5.144 -0.173 1.00 20.45 ? 11 DG B "O4'" 1 ATOM 166 C "C3'" . DG B 1 1 ? 23.635 7.418 -0.619 1.00 22.56 ? 11 DG B "C3'" 1 ATOM 167 O "O3'" . DG B 1 1 ? 22.900 8.393 -1.337 1.00 17.74 ? 11 DG B "O3'" 1 ATOM 168 C "C2'" . DG B 1 1 ? 23.136 7.154 0.795 1.00 23.08 ? 11 DG B "C2'" 1 ATOM 169 C "C1'" . DG B 1 1 ? 23.882 5.855 1.054 1.00 19.10 ? 11 DG B "C1'" 1 ATOM 170 N N9 . DG B 1 1 ? 25.261 6.084 1.472 1.00 15.77 ? 11 DG B N9 1 ATOM 171 C C8 . DG B 1 1 ? 26.381 5.931 0.687 1.00 16.66 ? 11 DG B C8 1 ATOM 172 N N7 . DG B 1 1 ? 27.491 6.200 1.303 1.00 16.32 ? 11 DG B N7 1 ATOM 173 C C5 . DG B 1 1 ? 27.064 6.556 2.587 1.00 11.03 ? 11 DG B C5 1 ATOM 174 C C6 . DG B 1 1 ? 27.858 6.948 3.688 1.00 14.60 ? 11 DG B C6 1 ATOM 175 O O6 . DG B 1 1 ? 29.081 7.061 3.761 1.00 17.05 ? 11 DG B O6 1 ATOM 176 N N1 . DG B 1 1 ? 27.030 7.216 4.777 1.00 12.76 ? 11 DG B N1 1 ATOM 177 C C2 . DG B 1 1 ? 25.660 7.123 4.808 1.00 14.18 ? 11 DG B C2 1 ATOM 178 N N2 . DG B 1 1 ? 25.041 7.427 5.966 1.00 18.55 ? 11 DG B N2 1 ATOM 179 N N3 . DG B 1 1 ? 24.912 6.755 3.776 1.00 16.16 ? 11 DG B N3 1 ATOM 180 C C4 . DG B 1 1 ? 25.701 6.490 2.708 1.00 14.67 ? 11 DG B C4 1 ATOM 181 P P . DG B 1 2 ? 23.242 9.961 -1.181 1.00 20.37 ? 12 DG B P 1 ATOM 182 O OP1 . DG B 1 2 ? 22.397 10.715 -2.135 1.00 27.65 ? 12 DG B OP1 1 ATOM 183 O OP2 . DG B 1 2 ? 24.717 10.086 -1.184 1.00 21.91 ? 12 DG B OP2 1 ATOM 184 O "O5'" . DG B 1 2 ? 22.682 10.216 0.284 1.00 22.43 ? 12 DG B "O5'" 1 ATOM 185 C "C5'" . DG B 1 2 ? 22.944 11.385 1.052 1.00 19.26 ? 12 DG B "C5'" 1 ATOM 186 C "C4'" . DG B 1 2 ? 22.542 11.156 2.500 1.00 20.71 ? 12 DG B "C4'" 1 ATOM 187 O "O4'" . DG B 1 2 ? 23.143 9.935 2.993 1.00 18.50 ? 12 DG B "O4'" 1 ATOM 188 C "C3'" . DG B 1 2 ? 22.976 12.267 3.436 1.00 15.92 ? 12 DG B "C3'" 1 ATOM 189 O "O3'" . DG B 1 2 ? 21.879 13.112 3.789 1.00 21.00 ? 12 DG B "O3'" 1 ATOM 190 C "C2'" . DG B 1 2 ? 23.535 11.555 4.647 1.00 21.13 ? 12 DG B "C2'" 1 ATOM 191 C "C1'" . DG B 1 2 ? 23.970 10.208 4.114 1.00 19.51 ? 12 DG B "C1'" 1 ATOM 192 N N9 . DG B 1 2 ? 25.391 10.159 3.678 1.00 18.67 ? 12 DG B N9 1 ATOM 193 C C8 . DG B 1 2 ? 25.906 9.906 2.438 1.00 16.86 ? 12 DG B C8 1 ATOM 194 N N7 . DG B 1 2 ? 27.209 9.936 2.383 1.00 12.62 ? 12 DG B N7 1 ATOM 195 C C5 . DG B 1 2 ? 27.584 10.234 3.697 1.00 11.22 ? 12 DG B C5 1 ATOM 196 C C6 . DG B 1 2 ? 28.893 10.391 4.222 1.00 12.37 ? 12 DG B C6 1 ATOM 197 O O6 . DG B 1 2 ? 30.011 10.309 3.681 1.00 12.61 ? 12 DG B O6 1 ATOM 198 N N1 . DG B 1 2 ? 28.829 10.686 5.582 1.00 10.55 ? 12 DG B N1 1 ATOM 199 C C2 . DG B 1 2 ? 27.653 10.805 6.297 1.00 11.75 ? 12 DG B C2 1 ATOM 200 N N2 . DG B 1 2 ? 27.838 11.095 7.601 1.00 13.20 ? 12 DG B N2 1 ATOM 201 N N3 . DG B 1 2 ? 26.438 10.661 5.825 1.00 12.18 ? 12 DG B N3 1 ATOM 202 C C4 . DG B 1 2 ? 26.476 10.372 4.496 1.00 20.58 ? 12 DG B C4 1 ATOM 203 P P . DT B 1 3 ? 22.095 14.701 3.904 1.00 26.34 ? 13 DT B P 1 ATOM 204 O OP1 . DT B 1 3 ? 20.752 15.316 4.047 1.00 37.23 ? 13 DT B OP1 1 ATOM 205 O OP2 . DT B 1 3 ? 22.966 15.114 2.773 1.00 22.54 ? 13 DT B OP2 1 ATOM 206 O "O5'" . DT B 1 3 ? 22.899 14.919 5.259 1.00 25.65 ? 13 DT B "O5'" 1 ATOM 207 C "C5'" . DT B 1 3 ? 22.445 14.309 6.478 1.00 30.01 ? 13 DT B "C5'" 1 ATOM 208 C "C4'" . DT B 1 3 ? 23.486 14.584 7.537 1.00 28.83 ? 13 DT B "C4'" 1 ATOM 209 O "O4'" . DT B 1 3 ? 24.574 13.641 7.398 1.00 19.76 ? 13 DT B "O4'" 1 ATOM 210 C "C3'" . DT B 1 3 ? 24.110 15.956 7.444 1.00 32.95 ? 13 DT B "C3'" 1 ATOM 211 O "O3'" . DT B 1 3 ? 23.340 16.936 8.144 1.00 28.68 ? 13 DT B "O3'" 1 ATOM 212 C "C2'" . DT B 1 3 ? 25.480 15.755 8.055 1.00 30.46 ? 13 DT B "C2'" 1 ATOM 213 C "C1'" . DT B 1 3 ? 25.794 14.318 7.727 1.00 26.32 ? 13 DT B "C1'" 1 ATOM 214 N N1 . DT B 1 3 ? 26.674 14.122 6.547 1.00 20.24 ? 13 DT B N1 1 ATOM 215 C C2 . DT B 1 3 ? 28.026 14.120 6.772 1.00 15.93 ? 13 DT B C2 1 ATOM 216 O O2 . DT B 1 3 ? 28.473 14.271 7.894 1.00 24.90 ? 13 DT B O2 1 ATOM 217 N N3 . DT B 1 3 ? 28.827 13.934 5.663 1.00 12.90 ? 13 DT B N3 1 ATOM 218 C C4 . DT B 1 3 ? 28.334 13.758 4.377 1.00 16.47 ? 13 DT B C4 1 ATOM 219 O O4 . DT B 1 3 ? 29.108 13.601 3.441 1.00 18.74 ? 13 DT B O4 1 ATOM 220 C C5 . DT B 1 3 ? 26.898 13.777 4.217 1.00 18.90 ? 13 DT B C5 1 ATOM 221 C C7 . DT B 1 3 ? 26.333 13.594 2.842 1.00 21.73 ? 13 DT B C7 1 ATOM 222 C C6 . DT B 1 3 ? 26.120 13.956 5.298 1.00 20.39 ? 13 DT B C6 1 ATOM 223 P P . DA B 1 4 ? 23.520 18.464 7.659 1.00 30.73 ? 14 DA B P 1 ATOM 224 O OP1 . DA B 1 4 ? 22.630 19.309 8.505 1.00 34.86 ? 14 DA B OP1 1 ATOM 225 O OP2 . DA B 1 4 ? 23.354 18.480 6.183 1.00 42.75 ? 14 DA B OP2 1 ATOM 226 O "O5'" . DA B 1 4 ? 25.022 18.826 8.015 1.00 30.08 ? 14 DA B "O5'" 1 ATOM 227 C "C5'" . DA B 1 4 ? 25.856 19.701 7.246 1.00 30.65 ? 14 DA B "C5'" 1 ATOM 228 C "C4'" . DA B 1 4 ? 27.282 19.589 7.741 1.00 22.52 ? 14 DA B "C4'" 1 ATOM 229 O "O4'" . DA B 1 4 ? 27.725 18.231 7.470 1.00 18.50 ? 14 DA B "O4'" 1 ATOM 230 C "C3'" . DA B 1 4 ? 28.345 20.450 7.094 1.00 14.40 ? 14 DA B "C3'" 1 ATOM 231 O "O3'" . DA B 1 4 ? 28.418 21.748 7.679 1.00 21.93 ? 14 DA B "O3'" 1 ATOM 232 C "C2'" . DA B 1 4 ? 29.605 19.650 7.330 1.00 14.93 ? 14 DA B "C2'" 1 ATOM 233 C "C1'" . DA B 1 4 ? 29.121 18.222 7.206 1.00 16.62 ? 14 DA B "C1'" 1 ATOM 234 N N9 . DA B 1 4 ? 29.265 17.590 5.864 1.00 16.99 ? 14 DA B N9 1 ATOM 235 C C8 . DA B 1 4 ? 28.273 17.271 4.984 1.00 16.83 ? 14 DA B C8 1 ATOM 236 N N7 . DA B 1 4 ? 28.702 16.719 3.876 1.00 14.14 ? 14 DA B N7 1 ATOM 237 C C5 . DA B 1 4 ? 30.080 16.674 4.051 1.00 15.93 ? 14 DA B C5 1 ATOM 238 C C6 . DA B 1 4 ? 31.124 16.207 3.248 1.00 15.27 ? 14 DA B C6 1 ATOM 239 N N6 . DA B 1 4 ? 30.939 15.661 2.035 1.00 15.45 ? 14 DA B N6 1 ATOM 240 N N1 . DA B 1 4 ? 32.400 16.294 3.695 1.00 13.74 ? 14 DA B N1 1 ATOM 241 C C2 . DA B 1 4 ? 32.598 16.840 4.909 1.00 17.44 ? 14 DA B C2 1 ATOM 242 N N3 . DA B 1 4 ? 31.689 17.319 5.763 1.00 13.17 ? 14 DA B N3 1 ATOM 243 C C4 . DA B 1 4 ? 30.444 17.210 5.285 1.00 12.95 ? 14 DA B C4 1 ATOM 244 P P . DT B 1 5 ? 28.871 23.010 6.774 1.00 24.32 ? 15 DT B P 1 ATOM 245 O OP1 . DT B 1 5 ? 28.628 24.238 7.579 1.00 32.33 ? 15 DT B OP1 1 ATOM 246 O OP2 . DT B 1 5 ? 28.138 22.868 5.505 1.00 18.45 ? 15 DT B OP2 1 ATOM 247 O "O5'" . DT B 1 5 ? 30.404 22.838 6.560 1.00 22.75 ? 15 DT B "O5'" 1 ATOM 248 C "C5'" . DT B 1 5 ? 31.379 23.026 7.597 1.00 20.72 ? 15 DT B "C5'" 1 ATOM 249 C "C4'" . DT B 1 5 ? 32.712 22.606 7.096 1.00 19.39 ? 15 DT B "C4'" 1 ATOM 250 O "O4'" . DT B 1 5 ? 32.695 21.230 6.656 1.00 24.46 ? 15 DT B "O4'" 1 ATOM 251 C "C3'" . DT B 1 5 ? 33.196 23.339 5.842 1.00 25.89 ? 15 DT B "C3'" 1 ATOM 252 O "O3'" . DT B 1 5 ? 33.507 24.690 6.163 1.00 28.58 ? 15 DT B "O3'" 1 ATOM 253 C "C2'" . DT B 1 5 ? 34.342 22.431 5.449 1.00 26.98 ? 15 DT B "C2'" 1 ATOM 254 C "C1'" . DT B 1 5 ? 33.707 21.069 5.650 1.00 25.08 ? 15 DT B "C1'" 1 ATOM 255 N N1 . DT B 1 5 ? 33.013 20.459 4.479 1.00 12.84 ? 15 DT B N1 1 ATOM 256 C C2 . DT B 1 5 ? 33.752 19.700 3.616 1.00 18.43 ? 15 DT B C2 1 ATOM 257 O O2 . DT B 1 5 ? 34.944 19.494 3.739 1.00 23.34 ? 15 DT B O2 1 ATOM 258 N N3 . DT B 1 5 ? 33.019 19.183 2.573 1.00 16.93 ? 15 DT B N3 1 ATOM 259 C C4 . DT B 1 5 ? 31.679 19.330 2.306 1.00 18.99 ? 15 DT B C4 1 ATOM 260 O O4 . DT B 1 5 ? 31.177 18.796 1.325 1.00 16.26 ? 15 DT B O4 1 ATOM 261 C C5 . DT B 1 5 ? 30.964 20.142 3.265 1.00 16.79 ? 15 DT B C5 1 ATOM 262 C C7 . DT B 1 5 ? 29.499 20.377 3.083 1.00 17.73 ? 15 DT B C7 1 ATOM 263 C C6 . DT B 1 5 ? 31.676 20.650 4.283 1.00 10.88 ? 15 DT B C6 1 ATOM 264 P P . DA B 1 6 ? 33.348 25.781 4.980 1.00 38.76 ? 16 DA B P 1 ATOM 265 O OP1 . DA B 1 6 ? 33.601 27.121 5.556 1.00 54.87 ? 16 DA B OP1 1 ATOM 266 O OP2 . DA B 1 6 ? 32.106 25.489 4.234 1.00 48.51 ? 16 DA B OP2 1 ATOM 267 O "O5'" . DA B 1 6 ? 34.599 25.368 4.084 1.00 29.17 ? 16 DA B "O5'" 1 ATOM 268 C "C5'" . DA B 1 6 ? 35.924 25.462 4.626 1.00 23.18 ? 16 DA B "C5'" 1 ATOM 269 C "C4'" . DA B 1 6 ? 36.879 24.762 3.692 1.00 24.13 ? 16 DA B "C4'" 1 ATOM 270 O "O4'" . DA B 1 6 ? 36.430 23.376 3.600 1.00 29.49 ? 16 DA B "O4'" 1 ATOM 271 C "C3'" . DA B 1 6 ? 36.971 25.201 2.235 1.00 16.40 ? 16 DA B "C3'" 1 ATOM 272 O "O3'" . DA B 1 6 ? 37.815 26.332 2.063 1.00 20.25 ? 16 DA B "O3'" 1 ATOM 273 C "C2'" . DA B 1 6 ? 37.522 23.949 1.612 1.00 20.51 ? 16 DA B "C2'" 1 ATOM 274 C "C1'" . DA B 1 6 ? 36.825 22.829 2.353 1.00 28.23 ? 16 DA B "C1'" 1 ATOM 275 N N9 . DA B 1 6 ? 35.627 22.298 1.647 1.00 19.03 ? 16 DA B N9 1 ATOM 276 C C8 . DA B 1 6 ? 34.305 22.507 1.895 1.00 20.43 ? 16 DA B C8 1 ATOM 277 N N7 . DA B 1 6 ? 33.500 21.878 1.067 1.00 22.09 ? 16 DA B N7 1 ATOM 278 C C5 . DA B 1 6 ? 34.397 21.218 0.225 1.00 20.96 ? 16 DA B C5 1 ATOM 279 C C6 . DA B 1 6 ? 34.192 20.364 -0.886 1.00 15.64 ? 16 DA B C6 1 ATOM 280 N N6 . DA B 1 6 ? 32.942 20.102 -1.244 1.00 15.90 ? 16 DA B N6 1 ATOM 281 N N1 . DA B 1 6 ? 35.270 19.871 -1.513 1.00 16.72 ? 16 DA B N1 1 ATOM 282 C C2 . DA B 1 6 ? 36.500 20.194 -1.078 1.00 22.91 ? 16 DA B C2 1 ATOM 283 N N3 . DA B 1 6 ? 36.811 20.985 -0.045 1.00 22.08 ? 16 DA B N3 1 ATOM 284 C C4 . DA B 1 6 ? 35.701 21.458 0.555 1.00 17.23 ? 16 DA B C4 1 ATOM 285 P P . DC B 1 7 ? 37.606 27.359 0.851 1.00 26.28 ? 17 DC B P 1 ATOM 286 O OP1 . DC B 1 7 ? 38.531 28.498 1.092 1.00 19.38 ? 17 DC B OP1 1 ATOM 287 O OP2 . DC B 1 7 ? 36.148 27.645 0.739 1.00 25.00 ? 17 DC B OP2 1 ATOM 288 O "O5'" . DC B 1 7 ? 38.063 26.565 -0.452 1.00 17.66 ? 17 DC B "O5'" 1 ATOM 289 C "C5'" . DC B 1 7 ? 39.418 26.213 -0.725 1.00 21.01 ? 17 DC B "C5'" 1 ATOM 290 C "C4'" . DC B 1 7 ? 39.549 25.162 -1.792 1.00 23.31 ? 17 DC B "C4'" 1 ATOM 291 O "O4'" . DC B 1 7 ? 38.808 23.958 -1.473 1.00 24.92 ? 17 DC B "O4'" 1 ATOM 292 C "C3'" . DC B 1 7 ? 38.985 25.549 -3.161 1.00 15.24 ? 17 DC B "C3'" 1 ATOM 293 O "O3'" . DC B 1 7 ? 39.890 26.380 -3.863 1.00 17.71 ? 17 DC B "O3'" 1 ATOM 294 C "C2'" . DC B 1 7 ? 38.785 24.215 -3.820 1.00 8.63 ? 17 DC B "C2'" 1 ATOM 295 C "C1'" . DC B 1 7 ? 38.267 23.386 -2.670 1.00 19.53 ? 17 DC B "C1'" 1 ATOM 296 N N1 . DC B 1 7 ? 36.798 23.382 -2.534 1.00 15.35 ? 17 DC B N1 1 ATOM 297 C C2 . DC B 1 7 ? 36.059 22.515 -3.350 1.00 17.93 ? 17 DC B C2 1 ATOM 298 O O2 . DC B 1 7 ? 36.700 21.797 -4.137 1.00 16.58 ? 17 DC B O2 1 ATOM 299 N N3 . DC B 1 7 ? 34.719 22.515 -3.221 1.00 12.56 ? 17 DC B N3 1 ATOM 300 C C4 . DC B 1 7 ? 34.111 23.322 -2.341 1.00 16.89 ? 17 DC B C4 1 ATOM 301 N N4 . DC B 1 7 ? 32.781 23.284 -2.254 1.00 22.20 ? 17 DC B N4 1 ATOM 302 C C5 . DC B 1 7 ? 34.842 24.214 -1.503 1.00 16.12 ? 17 DC B C5 1 ATOM 303 C C6 . DC B 1 7 ? 36.173 24.202 -1.648 1.00 16.59 ? 17 DC B C6 1 ATOM 304 P P . DC B 1 8 ? 39.286 27.390 -4.975 1.00 16.35 ? 18 DC B P 1 ATOM 305 O OP1 . DC B 1 8 ? 40.437 28.203 -5.427 1.00 16.01 ? 18 DC B OP1 1 ATOM 306 O OP2 . DC B 1 8 ? 38.052 28.007 -4.468 1.00 16.46 ? 18 DC B OP2 1 ATOM 307 O "O5'" . DC B 1 8 ? 38.849 26.388 -6.149 1.00 19.58 ? 18 DC B "O5'" 1 ATOM 308 C "C5'" . DC B 1 8 ? 39.732 25.639 -6.980 1.00 18.90 ? 18 DC B "C5'" 1 ATOM 309 C "C4'" . DC B 1 8 ? 38.912 24.858 -7.981 1.00 12.64 ? 18 DC B "C4'" 1 ATOM 310 O "O4'" . DC B 1 8 ? 37.956 24.040 -7.278 1.00 16.04 ? 18 DC B "O4'" 1 ATOM 311 C "C3'" . DC B 1 8 ? 38.067 25.685 -8.936 1.00 13.83 ? 18 DC B "C3'" 1 ATOM 312 O "O3'" . DC B 1 8 ? 38.807 26.041 -10.110 1.00 16.12 ? 18 DC B "O3'" 1 ATOM 313 C "C2'" . DC B 1 8 ? 36.889 24.802 -9.253 1.00 12.43 ? 18 DC B "C2'" 1 ATOM 314 C "C1'" . DC B 1 8 ? 36.793 23.858 -8.075 1.00 19.76 ? 18 DC B "C1'" 1 ATOM 315 N N1 . DC B 1 8 ? 35.608 24.109 -7.212 1.00 16.45 ? 18 DC B N1 1 ATOM 316 C C2 . DC B 1 8 ? 34.397 23.520 -7.560 1.00 16.83 ? 18 DC B C2 1 ATOM 317 O O2 . DC B 1 8 ? 34.356 22.809 -8.589 1.00 15.21 ? 18 DC B O2 1 ATOM 318 N N3 . DC B 1 8 ? 33.300 23.735 -6.786 1.00 13.43 ? 18 DC B N3 1 ATOM 319 C C4 . DC B 1 8 ? 33.432 24.513 -5.699 1.00 16.16 ? 18 DC B C4 1 ATOM 320 N N4 . DC B 1 8 ? 32.366 24.733 -4.929 1.00 14.69 ? 18 DC B N4 1 ATOM 321 C C5 . DC B 1 8 ? 34.673 25.115 -5.342 1.00 14.96 ? 18 DC B C5 1 ATOM 322 C C6 . DC B 1 8 ? 35.751 24.900 -6.106 1.00 18.48 ? 18 DC B C6 1 HETATM 323 N N1 . SPM C 2 . ? 30.359 23.714 3.092 0.70 19.31 ? 20 SPM B N1 1 HETATM 324 C C2 . SPM C 2 . ? 28.996 24.179 3.187 0.70 30.45 ? 20 SPM B C2 1 HETATM 325 C C3 . SPM C 2 . ? 28.135 23.428 2.198 0.70 28.05 ? 20 SPM B C3 1 HETATM 326 C C4 . SPM C 2 . ? 26.672 23.816 2.222 0.70 39.35 ? 20 SPM B C4 1 HETATM 327 N N5 . SPM C 2 . ? 25.736 22.734 1.726 0.70 49.18 ? 20 SPM B N5 1 HETATM 328 C C6 . SPM C 2 . ? 24.552 22.467 2.629 0.70 50.10 ? 20 SPM B C6 1 HETATM 329 C C7 . SPM C 2 . ? 23.249 23.147 2.257 0.70 50.11 ? 20 SPM B C7 1 HETATM 330 C C8 . SPM C 2 . ? 23.312 24.090 1.081 0.70 49.65 ? 20 SPM B C8 1 HETATM 331 C C9 . SPM C 2 . ? 23.981 25.452 1.390 0.70 52.48 ? 20 SPM B C9 1 HETATM 332 N N10 . SPM C 2 . ? 24.061 25.684 2.943 0.70 51.42 ? 20 SPM B N10 1 HETATM 333 C C11 . SPM C 2 . ? 24.243 27.169 3.268 0.70 54.17 ? 20 SPM B C11 1 HETATM 334 C C12 . SPM C 2 . ? 23.982 28.060 2.059 0.70 57.77 ? 20 SPM B C12 1 HETATM 335 C C13 . SPM C 2 . ? 25.247 28.471 1.279 0.70 63.35 ? 20 SPM B C13 1 HETATM 336 N N14 . SPM C 2 . ? 25.051 29.855 0.833 0.70 72.24 ? 20 SPM B N14 1 HETATM 337 O O . HOH D 3 . ? 39.065 18.128 1.678 1.00 23.35 ? 102 HOH A O 1 HETATM 338 O O . HOH D 3 . ? 33.394 6.733 6.572 1.00 20.22 ? 103 HOH A O 1 HETATM 339 O O . HOH D 3 . ? 32.622 13.831 -3.015 1.00 40.07 ? 104 HOH A O 1 HETATM 340 O O . HOH D 3 . ? 32.919 10.555 1.602 1.00 33.42 ? 107 HOH A O 1 HETATM 341 O O . HOH D 3 . ? 27.182 19.977 -5.297 1.00 69.66 ? 111 HOH A O 1 HETATM 342 O O . HOH D 3 . ? 29.467 6.012 15.685 1.00 30.20 ? 112 HOH A O 1 HETATM 343 O O . HOH D 3 . ? 35.094 10.860 2.989 1.00 24.72 ? 113 HOH A O 1 HETATM 344 O O . HOH D 3 . ? 24.310 17.280 -5.980 1.00 49.88 ? 114 HOH A O 1 HETATM 345 O O . HOH D 3 . ? 29.400 18.990 -2.545 1.00 35.02 ? 115 HOH A O 1 HETATM 346 O O . HOH D 3 . ? 30.020 20.220 -12.200 1.00 39.18 ? 116 HOH A O 1 HETATM 347 O O . HOH D 3 . ? 26.810 12.110 -9.180 1.00 39.18 ? 117 HOH A O 1 HETATM 348 O O . HOH D 3 . ? 35.338 8.497 4.820 1.00 27.07 ? 118 HOH A O 1 HETATM 349 O O . HOH D 3 . ? 34.340 7.580 9.480 1.00 33.80 ? 122 HOH A O 1 HETATM 350 O O . HOH D 3 . ? 37.024 9.144 6.499 1.00 28.22 ? 123 HOH A O 1 HETATM 351 O O . HOH D 3 . ? 32.321 6.271 11.013 1.00 21.18 ? 124 HOH A O 1 HETATM 352 O O . HOH D 3 . ? 37.620 10.712 2.440 1.00 27.03 ? 125 HOH A O 1 HETATM 353 O O . HOH D 3 . ? 35.535 10.851 -2.510 1.00 53.63 ? 126 HOH A O 1 HETATM 354 O O . HOH D 3 . ? 29.313 23.202 -2.967 1.00 30.29 ? 129 HOH A O 1 HETATM 355 O O . HOH D 3 . ? 41.480 10.463 9.975 1.00 39.79 ? 136 HOH A O 1 HETATM 356 O O . HOH D 3 . ? 30.757 15.374 -1.842 1.00 46.38 ? 139 HOH A O 1 HETATM 357 O O . HOH D 3 . ? 25.559 5.327 13.651 1.00 36.17 ? 140 HOH A O 1 HETATM 358 O O . HOH D 3 . ? 33.230 13.163 -5.287 1.00 26.71 ? 143 HOH A O 1 HETATM 359 O O . HOH D 3 . ? 35.860 7.150 12.440 1.00 43.87 ? 144 HOH A O 1 HETATM 360 O O . HOH D 3 . ? 32.315 6.228 3.551 1.00 47.26 ? 145 HOH A O 1 HETATM 361 O O . HOH D 3 . ? 35.203 19.218 -9.552 1.00 19.22 ? 146 HOH A O 1 HETATM 362 O O . HOH D 3 . ? 28.616 25.333 -4.888 1.00 38.92 ? 148 HOH A O 1 HETATM 363 O O . HOH D 3 . ? 29.696 27.298 -4.614 1.00 55.78 ? 150 HOH A O 1 HETATM 364 O O . HOH D 3 . ? 40.542 8.955 8.547 1.00 56.64 ? 151 HOH A O 1 HETATM 365 O O . HOH D 3 . ? 29.385 13.781 -6.615 1.00 34.11 ? 152 HOH A O 1 HETATM 366 O O . HOH D 3 . ? 32.724 8.769 -0.330 1.00 65.88 ? 156 HOH A O 1 HETATM 367 O O . HOH D 3 . ? 40.453 9.812 -3.277 1.00 39.85 ? 158 HOH A O 1 HETATM 368 O O . HOH D 3 . ? 26.274 24.165 -4.818 1.00 42.87 ? 159 HOH A O 1 HETATM 369 O O . HOH D 3 . ? 29.113 12.682 -8.616 1.00 30.08 ? 160 HOH A O 1 HETATM 370 O O . HOH D 3 . ? 40.820 9.230 3.010 1.00 47.51 ? 161 HOH A O 1 HETATM 371 O O . HOH D 3 . ? 39.512 12.913 -7.222 1.00 40.96 ? 162 HOH A O 1 HETATM 372 O O . HOH D 3 . ? 26.141 13.590 -11.208 1.00 39.87 ? 163 HOH A O 1 HETATM 373 O O . HOH D 3 . ? 28.896 11.210 -5.911 1.00 48.29 ? 166 HOH A O 1 HETATM 374 O O . HOH D 3 . ? 29.182 12.990 -3.407 1.00 52.45 ? 167 HOH A O 1 HETATM 375 O O . HOH D 3 . ? 41.066 10.589 12.588 1.00 67.67 ? 168 HOH A O 1 HETATM 376 O O . HOH D 3 . ? 34.302 6.793 16.757 1.00 46.90 ? 169 HOH A O 1 HETATM 377 O O . HOH D 3 . ? 37.570 7.000 16.810 1.00 47.33 ? 171 HOH A O 1 HETATM 378 O O . HOH D 3 . ? 33.080 5.460 14.850 1.00 43.63 ? 172 HOH A O 1 HETATM 379 O O . HOH D 3 . ? 40.800 7.240 6.250 1.00 40.60 ? 173 HOH A O 1 HETATM 380 O O . HOH D 3 . ? 38.800 6.560 9.410 1.00 42.21 ? 174 HOH A O 1 HETATM 381 O O . HOH E 3 . ? 27.121 17.194 1.677 1.00 28.91 ? 101 HOH B O 1 HETATM 382 O O . HOH E 3 . ? 22.420 7.570 6.960 1.00 31.72 ? 105 HOH B O 1 HETATM 383 O O . HOH E 3 . ? 29.141 12.425 1.015 1.00 27.70 ? 106 HOH B O 1 HETATM 384 O O . HOH E 3 . ? 29.257 18.499 0.106 1.00 27.51 ? 108 HOH B O 1 HETATM 385 O O . HOH E 3 . ? 32.725 18.021 8.296 1.00 23.89 ? 109 HOH B O 1 HETATM 386 O O . HOH E 3 . ? 35.728 21.476 -10.473 1.00 18.69 ? 110 HOH B O 1 HETATM 387 O O . HOH E 3 . ? 29.581 25.961 9.154 1.00 42.06 ? 119 HOH B O 1 HETATM 388 O O . HOH E 3 . ? 26.764 12.143 -0.584 1.00 28.59 ? 120 HOH B O 1 HETATM 389 O O . HOH E 3 . ? 28.753 14.864 -0.251 1.00 38.73 ? 121 HOH B O 1 HETATM 390 O O . HOH E 3 . ? 26.790 8.720 -2.280 1.00 45.14 ? 127 HOH B O 1 HETATM 391 O O . HOH E 3 . ? 28.085 9.329 0.122 1.00 27.71 ? 128 HOH B O 1 HETATM 392 O O . HOH E 3 . ? 32.757 26.888 -2.856 1.00 23.71 ? 130 HOH B O 1 HETATM 393 O O . HOH E 3 . ? 35.683 27.473 -3.271 1.00 25.05 ? 131 HOH B O 1 HETATM 394 O O . HOH E 3 . ? 33.285 26.482 1.005 1.00 43.46 ? 132 HOH B O 1 HETATM 395 O O . HOH E 3 . ? 31.240 24.979 -0.086 1.00 31.33 ? 133 HOH B O 1 HETATM 396 O O . HOH E 3 . ? 27.944 4.759 -3.072 1.00 41.65 ? 134 HOH B O 1 HETATM 397 O O . HOH E 3 . ? 29.182 4.951 -5.743 1.00 48.64 ? 135 HOH B O 1 HETATM 398 O O . HOH E 3 . ? 37.978 19.173 4.231 1.00 30.44 ? 137 HOH B O 1 HETATM 399 O O . HOH E 3 . ? 24.943 17.042 4.135 1.00 28.41 ? 138 HOH B O 1 HETATM 400 O O . HOH E 3 . ? 21.510 11.420 8.130 1.00 50.20 ? 141 HOH B O 1 HETATM 401 O O . HOH E 3 . ? 24.357 10.362 7.800 1.00 18.20 ? 142 HOH B O 1 HETATM 402 O O . HOH E 3 . ? 41.650 25.740 -10.110 1.00 46.90 ? 147 HOH B O 1 HETATM 403 O O . HOH E 3 . ? 29.726 6.417 0.206 1.00 28.51 ? 149 HOH B O 1 HETATM 404 O O . HOH E 3 . ? 33.820 28.090 -0.840 1.00 57.85 ? 153 HOH B O 1 HETATM 405 O O . HOH E 3 . ? 30.000 20.697 -1.074 1.00 34.11 ? 154 HOH B O 1 HETATM 406 O O . HOH E 3 . ? 36.681 20.852 6.799 1.00 37.50 ? 155 HOH B O 1 HETATM 407 O O . HOH E 3 . ? 26.392 19.036 2.841 1.00 43.72 ? 157 HOH B O 1 HETATM 408 O O . HOH E 3 . ? 27.191 16.350 -2.069 1.00 38.16 ? 164 HOH B O 1 HETATM 409 O O . HOH E 3 . ? 40.890 28.200 -9.130 1.00 61.45 ? 165 HOH B O 1 HETATM 410 O O . HOH E 3 . ? 30.883 8.321 1.845 1.00 32.04 ? 170 HOH B O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DC 8 8 8 DC C A . n B 1 1 DG 1 11 11 DG G B . n B 1 2 DG 2 12 12 DG G B . n B 1 3 DT 3 13 13 DT T B . n B 1 4 DA 4 14 14 DA A B . n B 1 5 DT 5 15 15 DT T B . n B 1 6 DA 6 16 16 DA A B . n B 1 7 DC 7 17 17 DC C B . n B 1 8 DC 8 18 18 DC C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SPM 1 20 20 SPM SPM B . D 3 HOH 1 102 102 HOH HOH A . D 3 HOH 2 103 103 HOH HOH A . D 3 HOH 3 104 104 HOH HOH A . D 3 HOH 4 107 107 HOH HOH A . D 3 HOH 5 111 111 HOH HOH A . D 3 HOH 6 112 112 HOH HOH A . D 3 HOH 7 113 113 HOH HOH A . D 3 HOH 8 114 114 HOH HOH A . D 3 HOH 9 115 115 HOH HOH A . D 3 HOH 10 116 116 HOH HOH A . D 3 HOH 11 117 117 HOH HOH A . D 3 HOH 12 118 118 HOH HOH A . D 3 HOH 13 122 122 HOH HOH A . D 3 HOH 14 123 123 HOH HOH A . D 3 HOH 15 124 124 HOH HOH A . D 3 HOH 16 125 125 HOH HOH A . D 3 HOH 17 126 126 HOH HOH A . D 3 HOH 18 129 129 HOH HOH A . D 3 HOH 19 136 136 HOH HOH A . D 3 HOH 20 139 139 HOH HOH A . D 3 HOH 21 140 140 HOH HOH A . D 3 HOH 22 143 143 HOH HOH A . D 3 HOH 23 144 144 HOH HOH A . D 3 HOH 24 145 145 HOH HOH A . D 3 HOH 25 146 146 HOH HOH A . D 3 HOH 26 148 148 HOH HOH A . D 3 HOH 27 150 150 HOH HOH A . D 3 HOH 28 151 151 HOH HOH A . D 3 HOH 29 152 152 HOH HOH A . D 3 HOH 30 156 156 HOH HOH A . D 3 HOH 31 158 158 HOH HOH A . D 3 HOH 32 159 159 HOH HOH A . D 3 HOH 33 160 160 HOH HOH A . D 3 HOH 34 161 161 HOH HOH A . D 3 HOH 35 162 162 HOH HOH A . D 3 HOH 36 163 163 HOH HOH A . D 3 HOH 37 166 166 HOH HOH A . D 3 HOH 38 167 167 HOH HOH A . D 3 HOH 39 168 168 HOH HOH A . D 3 HOH 40 169 169 HOH HOH A . D 3 HOH 41 171 171 HOH HOH A . D 3 HOH 42 172 172 HOH HOH A . D 3 HOH 43 173 173 HOH HOH A . D 3 HOH 44 174 174 HOH HOH A . E 3 HOH 1 101 101 HOH HOH B . E 3 HOH 2 105 105 HOH HOH B . E 3 HOH 3 106 106 HOH HOH B . E 3 HOH 4 108 108 HOH HOH B . E 3 HOH 5 109 109 HOH HOH B . E 3 HOH 6 110 110 HOH HOH B . E 3 HOH 7 119 119 HOH HOH B . E 3 HOH 8 120 120 HOH HOH B . E 3 HOH 9 121 121 HOH HOH B . E 3 HOH 10 127 127 HOH HOH B . E 3 HOH 11 128 128 HOH HOH B . E 3 HOH 12 130 130 HOH HOH B . E 3 HOH 13 131 131 HOH HOH B . E 3 HOH 14 132 132 HOH HOH B . E 3 HOH 15 133 133 HOH HOH B . E 3 HOH 16 134 134 HOH HOH B . E 3 HOH 17 135 135 HOH HOH B . E 3 HOH 18 137 137 HOH HOH B . E 3 HOH 19 138 138 HOH HOH B . E 3 HOH 20 141 141 HOH HOH B . E 3 HOH 21 142 142 HOH HOH B . E 3 HOH 22 147 147 HOH HOH B . E 3 HOH 23 149 149 HOH HOH B . E 3 HOH 24 153 153 HOH HOH B . E 3 HOH 25 154 154 HOH HOH B . E 3 HOH 26 155 155 HOH HOH B . E 3 HOH 27 157 157 HOH HOH B . E 3 HOH 28 164 164 HOH HOH B . E 3 HOH 29 165 165 HOH HOH B . E 3 HOH 30 170 170 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-07-24 2 'Structure model' 1 1 2008-01-17 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELX 'model building' . ? 1 SHELXL-97 refinement . ? 2 AUTOMAR 'data collection' . ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.54 108.30 2.24 0.30 N 2 1 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 126.56 122.90 3.66 0.60 N 3 1 N1 B DA 16 ? ? C6 B DA 16 ? ? N6 B DA 16 ? ? 123.97 118.60 5.37 0.60 N 4 1 C5 B DA 16 ? ? C6 B DA 16 ? ? N6 B DA 16 ? ? 117.86 123.70 -5.84 0.80 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 SPM N1 N N N 147 SPM C2 C N N 148 SPM C3 C N N 149 SPM C4 C N N 150 SPM N5 N N N 151 SPM C6 C N N 152 SPM C7 C N N 153 SPM C8 C N N 154 SPM C9 C N N 155 SPM N10 N N N 156 SPM C11 C N N 157 SPM C12 C N N 158 SPM C13 C N N 159 SPM N14 N N N 160 SPM HN11 H N N 161 SPM HN12 H N N 162 SPM H21 H N N 163 SPM H22 H N N 164 SPM H31 H N N 165 SPM H32 H N N 166 SPM H41 H N N 167 SPM H42 H N N 168 SPM HN5 H N N 169 SPM H61 H N N 170 SPM H62 H N N 171 SPM H71 H N N 172 SPM H72 H N N 173 SPM H81 H N N 174 SPM H82 H N N 175 SPM H91 H N N 176 SPM H92 H N N 177 SPM HN0 H N N 178 SPM H111 H N N 179 SPM H112 H N N 180 SPM H121 H N N 181 SPM H122 H N N 182 SPM H131 H N N 183 SPM H132 H N N 184 SPM HN41 H N N 185 SPM HN42 H N N 186 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 SPM N1 C2 sing N N 152 SPM N1 HN11 sing N N 153 SPM N1 HN12 sing N N 154 SPM C2 C3 sing N N 155 SPM C2 H21 sing N N 156 SPM C2 H22 sing N N 157 SPM C3 C4 sing N N 158 SPM C3 H31 sing N N 159 SPM C3 H32 sing N N 160 SPM C4 N5 sing N N 161 SPM C4 H41 sing N N 162 SPM C4 H42 sing N N 163 SPM N5 C6 sing N N 164 SPM N5 HN5 sing N N 165 SPM C6 C7 sing N N 166 SPM C6 H61 sing N N 167 SPM C6 H62 sing N N 168 SPM C7 C8 sing N N 169 SPM C7 H71 sing N N 170 SPM C7 H72 sing N N 171 SPM C8 C9 sing N N 172 SPM C8 H81 sing N N 173 SPM C8 H82 sing N N 174 SPM C9 N10 sing N N 175 SPM C9 H91 sing N N 176 SPM C9 H92 sing N N 177 SPM N10 C11 sing N N 178 SPM N10 HN0 sing N N 179 SPM C11 C12 sing N N 180 SPM C11 H111 sing N N 181 SPM C11 H112 sing N N 182 SPM C12 C13 sing N N 183 SPM C12 H121 sing N N 184 SPM C12 H122 sing N N 185 SPM C13 N14 sing N N 186 SPM C13 H131 sing N N 187 SPM C13 H132 sing N N 188 SPM N14 HN41 sing N N 189 SPM N14 HN42 sing N N 190 # _ndb_struct_conf_na.entry_id 2PL8 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 8 1_555 -0.384 -0.142 -0.100 -5.534 -6.384 0.276 1 A_DG1:DC18_B A 1 ? B 18 ? 19 1 1 A DG 2 1_555 B DC 7 1_555 -0.357 -0.167 0.033 -8.401 -14.727 0.490 2 A_DG2:DC17_B A 2 ? B 17 ? 19 1 1 A DT 3 1_555 B DA 6 1_555 0.175 -0.214 0.101 -2.350 -10.786 -7.983 3 A_DT3:DA16_B A 3 ? B 16 ? 20 1 1 A DA 4 1_555 B DT 5 1_555 0.067 -0.155 0.256 -4.910 -13.612 4.490 4 A_DA4:DT15_B A 4 ? B 15 ? 20 1 1 A DT 5 1_555 B DA 4 1_555 -0.015 -0.076 0.368 6.678 -14.812 3.995 5 A_DT5:DA14_B A 5 ? B 14 ? 20 1 1 A DA 6 1_555 B DT 3 1_555 0.115 -0.178 0.006 10.639 -19.188 1.642 6 A_DA6:DT13_B A 6 ? B 13 ? 20 1 1 A DC 7 1_555 B DG 2 1_555 0.361 -0.180 0.003 9.009 -19.184 2.390 7 A_DC7:DG12_B A 7 ? B 12 ? 19 1 1 A DC 8 1_555 B DG 1 1_555 0.312 -0.209 0.046 7.769 -1.798 -2.827 8 A_DC8:DG11_B A 8 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 8 1_555 A DG 2 1_555 B DC 7 1_555 0.247 -1.901 3.209 -0.761 7.838 30.962 -4.752 -0.575 2.654 14.391 1.398 31.924 1 AA_DG1DG2:DC17DC18_BB A 1 ? B 18 ? A 2 ? B 17 ? 1 A DG 2 1_555 B DC 7 1_555 A DT 3 1_555 B DA 6 1_555 -0.779 -1.246 3.008 -0.782 1.684 40.272 -1.982 1.049 2.969 2.444 1.135 40.313 2 AA_DG2DT3:DA16DC17_BB A 2 ? B 17 ? A 3 ? B 16 ? 1 A DT 3 1_555 B DA 6 1_555 A DA 4 1_555 B DT 5 1_555 0.563 -1.299 3.066 0.599 9.244 28.296 -4.232 -0.986 2.536 18.300 -1.186 29.744 3 AA_DT3DA4:DT15DA16_BB A 3 ? B 16 ? A 4 ? B 15 ? 1 A DA 4 1_555 B DT 5 1_555 A DT 5 1_555 B DA 4 1_555 0.190 -1.278 2.894 -1.276 1.240 33.512 -2.393 -0.512 2.838 2.149 2.211 33.558 4 AA_DA4DT5:DA14DT15_BB A 4 ? B 15 ? A 5 ? B 14 ? 1 A DT 5 1_555 B DA 4 1_555 A DA 6 1_555 B DT 3 1_555 -0.968 -1.333 2.900 -0.558 15.452 28.708 -4.521 1.651 1.963 28.687 1.035 32.530 5 AA_DT5DA6:DT13DA14_BB A 5 ? B 14 ? A 6 ? B 13 ? 1 A DA 6 1_555 B DT 3 1_555 A DC 7 1_555 B DG 2 1_555 0.681 -1.228 3.167 0.808 0.695 37.674 -1.987 -0.953 3.158 1.075 -1.251 37.689 6 AA_DA6DC7:DG12DT13_BB A 6 ? B 13 ? A 7 ? B 12 ? 1 A DC 7 1_555 B DG 2 1_555 A DC 8 1_555 B DG 1 1_555 -0.715 -1.829 3.191 -2.855 9.871 30.480 -4.900 0.831 2.545 18.139 5.247 32.127 7 AA_DC7DC8:DG11DG12_BB A 7 ? B 12 ? A 8 ? B 11 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 SPERMINE SPM 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2PL4 _pdbx_initial_refinement_model.details ? #