0.011240 0.000000 0.000000 0.000000 0.024207 0.000000 0.000000 0.000000 0.031557 0.00000 0.00000 0.00000 Lee, H.M. Kim, D.U. Byun, J.S. Cho, H.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 88.967 41.311 31.689 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Crystal Structure Analysis of Hp1043, an Orphan Resonse Regulator of H. Pylori 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 2005-05-15 BRUKER PROTEUM 300 SILICONE MAD M x-ray 1 0.97940 1.0 0.97952 1.0 0.97962 1.0 0.98742 1.0 6B PAL/PLS 0.97940 0.97940, 0.97952, 0.97962, 0.98742 SYNCHROTRON PAL/PLS BEAMLINE 6B 15662.956 Response regulator N-TERMINAL DOMAIN 1 man polymer 18.015 water 78 nat water HP1043 no yes (MSE)RGSHHHHHHGSLVPRGS(MSE)RVLLIEKNSVLGGEIEKGLNVKGF(MSE)ADVTESLEDGEYL(MSE)DIRNYD LV(MSE)VSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSN MRGSHHHHHHGSLVPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVSDKNALSFVSRI KEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Helicobacter Escherichia Escherichia coli sample 210 Helicobacter pylori 469008 Escherichia coli BL21(DE3) BL21(DE3) 1 1.86 34.02 VAPOR DIFFUSION, HANGING DROP 6.50 PEG 8K 3%, 100MM MES, 200MM CA-CACODYLATE, pH 6.50, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 repository Initial release Version format compliance Version format compliance 1 0 2007-05-01 1 1 2008-05-01 1 2 2011-07-13 NMR NMR NMR RCSB Y PDBJ 2007-04-20 REL REL HOH water HOH 1 2 HOH HOH 120 A HOH 2 2 HOH HOH 121 A HOH 3 2 HOH HOH 122 A HOH 4 2 HOH HOH 123 A HOH 5 2 HOH HOH 124 A HOH 6 2 HOH HOH 125 A HOH 7 2 HOH HOH 126 A HOH 8 2 HOH HOH 127 A HOH 9 2 HOH HOH 128 A HOH 10 2 HOH HOH 129 A HOH 11 2 HOH HOH 130 A HOH 12 2 HOH HOH 131 A HOH 13 2 HOH HOH 132 A HOH 14 2 HOH HOH 133 A HOH 15 2 HOH HOH 134 A HOH 16 2 HOH HOH 135 A HOH 17 2 HOH HOH 136 A HOH 18 2 HOH HOH 137 A HOH 19 2 HOH HOH 138 A HOH 20 2 HOH HOH 139 A HOH 21 2 HOH HOH 140 A HOH 22 2 HOH HOH 141 A HOH 23 2 HOH HOH 142 A HOH 24 2 HOH HOH 143 A HOH 25 2 HOH HOH 144 A HOH 26 2 HOH HOH 145 A HOH 27 2 HOH HOH 146 A HOH 28 2 HOH HOH 147 A HOH 29 2 HOH HOH 148 A HOH 30 2 HOH HOH 149 A HOH 31 2 HOH HOH 150 A HOH 32 2 HOH HOH 151 A HOH 33 2 HOH HOH 152 A HOH 34 2 HOH HOH 153 A HOH 35 2 HOH HOH 154 A HOH 36 2 HOH HOH 155 A HOH 37 2 HOH HOH 156 A HOH 38 2 HOH HOH 157 A HOH 39 2 HOH HOH 158 A HOH 40 2 HOH HOH 159 A HOH 41 2 HOH HOH 160 A HOH 42 2 HOH HOH 161 A HOH 43 2 HOH HOH 162 A HOH 44 2 HOH HOH 163 A HOH 45 2 HOH HOH 164 A HOH 46 2 HOH HOH 165 A HOH 48 2 HOH HOH 166 A HOH 49 2 HOH HOH 167 A HOH 50 2 HOH HOH 168 A HOH 51 2 HOH HOH 169 A HOH 52 2 HOH HOH 170 A HOH 53 2 HOH HOH 171 A HOH 54 2 HOH HOH 172 A HOH 55 2 HOH HOH 173 A HOH 56 2 HOH HOH 174 A HOH 57 2 HOH HOH 175 A HOH 58 2 HOH HOH 176 A HOH 59 2 HOH HOH 177 A HOH 60 2 HOH HOH 178 A HOH 61 2 HOH HOH 179 A HOH 62 2 HOH HOH 180 A HOH 63 2 HOH HOH 181 A HOH 64 2 HOH HOH 182 A HOH 65 2 HOH HOH 183 A HOH 66 2 HOH HOH 184 A HOH 67 2 HOH HOH 185 A HOH 68 2 HOH HOH 186 A HOH 69 2 HOH HOH 187 A HOH 70 2 HOH HOH 188 A HOH 71 2 HOH HOH 189 A HOH 72 2 HOH HOH 190 A HOH 74 2 HOH HOH 191 A HOH 75 2 HOH HOH 192 A HOH 76 2 HOH HOH 193 A HOH 77 2 HOH HOH 194 A HOH 78 2 HOH HOH 195 A HOH 79 2 HOH HOH 196 A HOH 80 2 HOH HOH 197 A n 1 -17 A n 2 -16 A n 3 -15 A n 4 -14 A n 5 -13 A n 6 -12 A n 7 -11 A n 8 -10 A n 9 -9 A n 10 -8 A n 11 -7 A n 12 -6 A n 13 -5 A n 14 -4 A PRO -3 n 15 PRO -3 A ARG -2 n 16 ARG -2 A GLY -1 n 17 GLY -1 A SER 0 n 18 SER 0 A MSE 1 n 19 MSE 1 A ARG 2 n 20 ARG 2 A VAL 3 n 21 VAL 3 A LEU 4 n 22 LEU 4 A LEU 5 n 23 LEU 5 A ILE 6 n 24 ILE 6 A GLU 7 n 25 GLU 7 A LYS 8 n 26 LYS 8 A ASN 9 n 27 ASN 9 A SER 10 n 28 SER 10 A VAL 11 n 29 VAL 11 A LEU 12 n 30 LEU 12 A GLY 13 n 31 GLY 13 A GLY 14 n 32 GLY 14 A GLU 15 n 33 GLU 15 A ILE 16 n 34 ILE 16 A GLU 17 n 35 GLU 17 A LYS 18 n 36 LYS 18 A GLY 19 n 37 GLY 19 A LEU 20 n 38 LEU 20 A ASN 21 n 39 ASN 21 A VAL 22 n 40 VAL 22 A LYS 23 n 41 LYS 23 A GLY 24 n 42 GLY 24 A PHE 25 n 43 PHE 25 A MSE 26 n 44 MSE 26 A ALA 27 n 45 ALA 27 A ASP 28 n 46 ASP 28 A VAL 29 n 47 VAL 29 A THR 30 n 48 THR 30 A GLU 31 n 49 GLU 31 A SER 32 n 50 SER 32 A LEU 33 n 51 LEU 33 A GLU 34 n 52 GLU 34 A ASP 35 n 53 ASP 35 A GLY 36 n 54 GLY 36 A GLU 37 n 55 GLU 37 A TYR 38 n 56 TYR 38 A LEU 39 n 57 LEU 39 A MSE 40 n 58 MSE 40 A ASP 41 n 59 ASP 41 A ILE 42 n 60 ILE 42 A ARG 43 n 61 ARG 43 A ASN 44 n 62 ASN 44 A TYR 45 n 63 TYR 45 A ASP 46 n 64 ASP 46 A LEU 47 n 65 LEU 47 A VAL 48 n 66 VAL 48 A MSE 49 n 67 MSE 49 A VAL 50 n 68 VAL 50 A SER 51 n 69 SER 51 A ASP 52 n 70 ASP 52 A LYS 53 n 71 LYS 53 A ASN 54 n 72 ASN 54 A ALA 55 n 73 ALA 55 A LEU 56 n 74 LEU 56 A SER 57 n 75 SER 57 A PHE 58 n 76 PHE 58 A VAL 59 n 77 VAL 59 A SER 60 n 78 SER 60 A ARG 61 n 79 ARG 61 A ILE 62 n 80 ILE 62 A LYS 63 n 81 LYS 63 A GLU 64 n 82 GLU 64 A LYS 65 n 83 LYS 65 A HIS 66 n 84 HIS 66 A SER 67 n 85 SER 67 A SER 68 n 86 SER 68 A ILE 69 n 87 ILE 69 A VAL 70 n 88 VAL 70 A VAL 71 n 89 VAL 71 A LEU 72 n 90 LEU 72 A VAL 73 n 91 VAL 73 A SER 74 n 92 SER 74 A SER 75 n 93 SER 75 A ASP 76 n 94 ASP 76 A ASN 77 n 95 ASN 77 A PRO 78 n 96 PRO 78 A THR 79 n 97 THR 79 A SER 80 n 98 SER 80 A GLU 81 n 99 GLU 81 A GLU 82 n 100 GLU 82 A GLU 83 n 101 GLU 83 A VAL 84 n 102 VAL 84 A HIS 85 n 103 HIS 85 A ALA 86 n 104 ALA 86 A PHE 87 n 105 PHE 87 A GLU 88 n 106 GLU 88 A GLN 89 n 107 GLN 89 A GLY 90 n 108 GLY 90 A ALA 91 n 109 ALA 91 A ASP 92 n 110 ASP 92 A ASP 93 n 111 ASP 93 A TYR 94 n 112 TYR 94 A ILE 95 n 113 ILE 95 A ALA 96 n 114 ALA 96 A LYS 97 n 115 LYS 97 A PRO 98 n 116 PRO 98 A TYR 99 n 117 TYR 99 A ARG 100 n 118 ARG 100 A SER 101 n 119 SER 101 A ILE 102 n 120 ILE 102 A LYS 103 n 121 LYS 103 A ALA 104 n 122 ALA 104 A LEU 105 n 123 LEU 105 A VAL 106 n 124 VAL 106 A ALA 107 n 125 ALA 107 A ARG 108 n 126 ARG 108 A ILE 109 n 127 ILE 109 A GLU 110 n 128 GLU 110 A ALA 111 n 129 ALA 111 A ARG 112 n 130 ARG 112 A LEU 113 n 131 LEU 113 A ARG 114 n 132 ARG 114 A n 133 115 A n 134 116 A n 135 117 A n 136 118 A n 137 119 A author_defined_assembly 2 dimeric A MSE 1 SELENOMETHIONINE A MSE 19 MET A MSE 26 SELENOMETHIONINE A MSE 44 MET A MSE 40 SELENOMETHIONINE A MSE 58 MET A MSE 49 SELENOMETHIONINE A MSE 67 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_665 -x+1,-y+1,z crystal symmetry operation 88.9670000000 41.3110000000 0.0000000000 A O ASP 28 A O ASP 46 A N LEU 5 A N LEU 23 A N ILE 6 A N ILE 24 A O MSE 49 A O MSE 67 A N VAL 48 A N VAL 66 A O LEU 72 A O LEU 90 A N VAL 73 A N VAL 91 A O ILE 95 A O ILE 113 1 A MSE -17 A MSE 1 1 Y 1 A ARG -16 A ARG 2 1 Y 1 A GLY -15 A GLY 3 1 Y 1 A SER -14 A SER 4 1 Y 1 A HIS -13 A HIS 5 1 Y 1 A HIS -12 A HIS 6 1 Y 1 A HIS -11 A HIS 7 1 Y 1 A HIS -10 A HIS 8 1 Y 1 A HIS -9 A HIS 9 1 Y 1 A HIS -8 A HIS 10 1 Y 1 A GLY -7 A GLY 11 1 Y 1 A SER -6 A SER 12 1 Y 1 A LEU -5 A LEU 13 1 Y 1 A VAL -4 A VAL 14 1 Y 1 A PHE 115 A PHE 133 1 Y 1 A TRP 116 A TRP 134 1 Y 1 A GLY 117 A GLY 135 1 Y 1 A SER 118 A SER 136 1 Y 1 A ASN 119 A ASN 137 1 Y 1 3.42 0.50 120.30 123.72 A A A NE CZ NH1 ARG ARG ARG 2 2 2 N 1 -3.86 0.50 120.30 116.44 A A A NE CZ NH2 ARG ARG ARG 2 2 2 N 1 -13.20 2.20 98.90 85.70 A A A CG SE CE MSE MSE MSE 26 26 26 N 1 A ASN 54 -98.33 34.22 21.15 -1.12000 0.00000 0.00000 -0.99000 0.00000 2.11000 0.944 0.936 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.24 0.206 0.208 1.80 44.50 543 10781 4.800 99.6 6.436 0.091 RANDOM 1 THROUGHOUT 0.000 MAD 0.288 0.134 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 1.80 44.50 78 1003 0 0 925 0.015 0.022 937 1.461 1.976 1259 5.433 5.000 117 39.675 24.186 43 14.640 15.000 180 19.062 15.000 8 0.096 0.200 144 0.006 0.020 689 0.218 0.200 402 0.302 0.200 658 0.176 0.200 64 0.314 0.200 27 0.184 0.200 14 1.564 1.500 601 2.189 2.000 944 3.563 3.000 368 4.617 4.500 315 2.657 3.000 969 6.178 3.000 79 3.007 3.000 926 0.35 0.211 1.85 44 749 20 96.35 1.800 50.000 2PLN 11373 0 0.000 0.099 1 7.3 99.9 1.80 1.86 0.368 7.2 100.0 phasing SOLVE refinement REFMAC 5.2.0003 data collection HKL-2000 data reduction DENZO data scaling SCALEPACK Response regulator Crystal structure analysis of HP1043, an orphan resonse regulator of h. pylori 1 N N 2 N N A ASN 9 A ASN 27 HELX_P A LYS 23 A LYS 41 1 1 15 A SER 32 A SER 50 HELX_P A ARG 43 A ARG 61 1 2 12 A ASN 54 A ASN 72 HELX_P A HIS 66 A HIS 84 1 3 13 A THR 79 A THR 97 HELX_P A GLN 89 A GLN 107 1 4 11 A SER 101 A SER 119 HELX_P A LEU 113 A LEU 131 1 5 13 covale 1.330 A SER 0 A C SER 18 1_555 A MSE 1 A N MSE 19 1_555 covale 1.328 A MSE 1 A C MSE 19 1_555 A ARG 2 A N ARG 20 1_555 covale 1.330 A PHE 25 A C PHE 43 1_555 A MSE 26 A N MSE 44 1_555 covale 1.335 A MSE 26 A C MSE 44 1_555 A ALA 27 A N ALA 45 1_555 covale 1.332 A LEU 39 A C LEU 57 1_555 A MSE 40 A N MSE 58 1_555 covale 1.331 A MSE 40 A C MSE 58 1_555 A ASP 41 A N ASP 59 1_555 covale 1.332 A VAL 48 A C VAL 66 1_555 A MSE 49 A N MSE 67 1_555 covale 1.323 A MSE 49 A C MSE 67 1_555 A VAL 50 A N VAL 68 1_555 SIGNALING PROTEIN HP1043, SIGNALING PROTEIN A LYS 97 A LYS 115 1 A PRO 98 A PRO 116 -1.85 O25684_HELPY UNP 1 1 O25684 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVSDKNALSFVSRIKEKHSSIVVLVSSDNPTS EEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSN 1 119 2PLN 1 119 O25684 A 1 19 137 1 EXPRESSION TAG MSE -17 2PLN A O25684 UNP 1 1 EXPRESSION TAG ARG -16 2PLN A O25684 UNP 2 1 EXPRESSION TAG GLY -15 2PLN A O25684 UNP 3 1 EXPRESSION TAG SER -14 2PLN A O25684 UNP 4 1 EXPRESSION TAG HIS -13 2PLN A O25684 UNP 5 1 EXPRESSION TAG HIS -12 2PLN A O25684 UNP 6 1 EXPRESSION TAG HIS -11 2PLN A O25684 UNP 7 1 EXPRESSION TAG HIS -10 2PLN A O25684 UNP 8 1 EXPRESSION TAG HIS -9 2PLN A O25684 UNP 9 1 EXPRESSION TAG HIS -8 2PLN A O25684 UNP 10 1 EXPRESSION TAG GLY -7 2PLN A O25684 UNP 11 1 EXPRESSION TAG SER -6 2PLN A O25684 UNP 12 1 EXPRESSION TAG LEU -5 2PLN A O25684 UNP 13 1 EXPRESSION TAG VAL -4 2PLN A O25684 UNP 14 1 EXPRESSION TAG PRO -3 2PLN A O25684 UNP 15 1 EXPRESSION TAG ARG -2 2PLN A O25684 UNP 16 1 EXPRESSION TAG GLY -1 2PLN A O25684 UNP 17 1 EXPRESSION TAG SER 0 2PLN A O25684 UNP 18 1 MET MODIFIED RESIDUE MSE 1 2PLN A O25684 UNP 1 19 1 MET MODIFIED RESIDUE MSE 26 2PLN A O25684 UNP 26 44 1 MET MODIFIED RESIDUE MSE 40 2PLN A O25684 UNP 40 58 1 MET MODIFIED RESIDUE MSE 49 2PLN A O25684 UNP 49 67 5 parallel parallel parallel parallel A MSE 26 A MSE 44 A THR 30 A THR 48 A ARG 2 A ARG 20 A ILE 6 A ILE 24 A LEU 47 A LEU 65 A VAL 50 A VAL 68 A VAL 70 A VAL 88 A SER 75 A SER 93 A ASP 93 A ASP 111 A ALA 96 A ALA 114 18 P 21 21 2