0.011240
0.000000
0.000000
0.000000
0.024207
0.000000
0.000000
0.000000
0.031557
0.00000
0.00000
0.00000
Lee, H.M.
Kim, D.U.
Byun, J.S.
Cho, H.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
88.967
41.311
31.689
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Crystal Structure Analysis of Hp1043, an Orphan Resonse Regulator of H. Pylori
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2005-05-15
BRUKER PROTEUM 300
SILICONE
MAD
M
x-ray
1
0.97940
1.0
0.97952
1.0
0.97962
1.0
0.98742
1.0
6B
PAL/PLS
0.97940
0.97940, 0.97952, 0.97962, 0.98742
SYNCHROTRON
PAL/PLS BEAMLINE 6B
15662.956
Response regulator
N-TERMINAL DOMAIN
1
man
polymer
18.015
water
78
nat
water
HP1043
no
yes
(MSE)RGSHHHHHHGSLVPRGS(MSE)RVLLIEKNSVLGGEIEKGLNVKGF(MSE)ADVTESLEDGEYL(MSE)DIRNYD
LV(MSE)VSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSN
MRGSHHHHHHGSLVPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVSDKNALSFVSRI
KEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Helicobacter
Escherichia
Escherichia coli
sample
210
Helicobacter pylori
469008
Escherichia coli BL21(DE3)
BL21(DE3)
1
1.86
34.02
VAPOR DIFFUSION, HANGING DROP
6.50
PEG 8K 3%, 100MM MES, 200MM CA-CACODYLATE, pH 6.50, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
repository
Initial release
Version format compliance
Version format compliance
1
0
2007-05-01
1
1
2008-05-01
1
2
2011-07-13
NMR
NMR
NMR
RCSB
Y
PDBJ
2007-04-20
REL
REL
HOH
water
HOH
1
2
HOH
HOH
120
A
HOH
2
2
HOH
HOH
121
A
HOH
3
2
HOH
HOH
122
A
HOH
4
2
HOH
HOH
123
A
HOH
5
2
HOH
HOH
124
A
HOH
6
2
HOH
HOH
125
A
HOH
7
2
HOH
HOH
126
A
HOH
8
2
HOH
HOH
127
A
HOH
9
2
HOH
HOH
128
A
HOH
10
2
HOH
HOH
129
A
HOH
11
2
HOH
HOH
130
A
HOH
12
2
HOH
HOH
131
A
HOH
13
2
HOH
HOH
132
A
HOH
14
2
HOH
HOH
133
A
HOH
15
2
HOH
HOH
134
A
HOH
16
2
HOH
HOH
135
A
HOH
17
2
HOH
HOH
136
A
HOH
18
2
HOH
HOH
137
A
HOH
19
2
HOH
HOH
138
A
HOH
20
2
HOH
HOH
139
A
HOH
21
2
HOH
HOH
140
A
HOH
22
2
HOH
HOH
141
A
HOH
23
2
HOH
HOH
142
A
HOH
24
2
HOH
HOH
143
A
HOH
25
2
HOH
HOH
144
A
HOH
26
2
HOH
HOH
145
A
HOH
27
2
HOH
HOH
146
A
HOH
28
2
HOH
HOH
147
A
HOH
29
2
HOH
HOH
148
A
HOH
30
2
HOH
HOH
149
A
HOH
31
2
HOH
HOH
150
A
HOH
32
2
HOH
HOH
151
A
HOH
33
2
HOH
HOH
152
A
HOH
34
2
HOH
HOH
153
A
HOH
35
2
HOH
HOH
154
A
HOH
36
2
HOH
HOH
155
A
HOH
37
2
HOH
HOH
156
A
HOH
38
2
HOH
HOH
157
A
HOH
39
2
HOH
HOH
158
A
HOH
40
2
HOH
HOH
159
A
HOH
41
2
HOH
HOH
160
A
HOH
42
2
HOH
HOH
161
A
HOH
43
2
HOH
HOH
162
A
HOH
44
2
HOH
HOH
163
A
HOH
45
2
HOH
HOH
164
A
HOH
46
2
HOH
HOH
165
A
HOH
48
2
HOH
HOH
166
A
HOH
49
2
HOH
HOH
167
A
HOH
50
2
HOH
HOH
168
A
HOH
51
2
HOH
HOH
169
A
HOH
52
2
HOH
HOH
170
A
HOH
53
2
HOH
HOH
171
A
HOH
54
2
HOH
HOH
172
A
HOH
55
2
HOH
HOH
173
A
HOH
56
2
HOH
HOH
174
A
HOH
57
2
HOH
HOH
175
A
HOH
58
2
HOH
HOH
176
A
HOH
59
2
HOH
HOH
177
A
HOH
60
2
HOH
HOH
178
A
HOH
61
2
HOH
HOH
179
A
HOH
62
2
HOH
HOH
180
A
HOH
63
2
HOH
HOH
181
A
HOH
64
2
HOH
HOH
182
A
HOH
65
2
HOH
HOH
183
A
HOH
66
2
HOH
HOH
184
A
HOH
67
2
HOH
HOH
185
A
HOH
68
2
HOH
HOH
186
A
HOH
69
2
HOH
HOH
187
A
HOH
70
2
HOH
HOH
188
A
HOH
71
2
HOH
HOH
189
A
HOH
72
2
HOH
HOH
190
A
HOH
74
2
HOH
HOH
191
A
HOH
75
2
HOH
HOH
192
A
HOH
76
2
HOH
HOH
193
A
HOH
77
2
HOH
HOH
194
A
HOH
78
2
HOH
HOH
195
A
HOH
79
2
HOH
HOH
196
A
HOH
80
2
HOH
HOH
197
A
n
1
-17
A
n
2
-16
A
n
3
-15
A
n
4
-14
A
n
5
-13
A
n
6
-12
A
n
7
-11
A
n
8
-10
A
n
9
-9
A
n
10
-8
A
n
11
-7
A
n
12
-6
A
n
13
-5
A
n
14
-4
A
PRO
-3
n
15
PRO
-3
A
ARG
-2
n
16
ARG
-2
A
GLY
-1
n
17
GLY
-1
A
SER
0
n
18
SER
0
A
MSE
1
n
19
MSE
1
A
ARG
2
n
20
ARG
2
A
VAL
3
n
21
VAL
3
A
LEU
4
n
22
LEU
4
A
LEU
5
n
23
LEU
5
A
ILE
6
n
24
ILE
6
A
GLU
7
n
25
GLU
7
A
LYS
8
n
26
LYS
8
A
ASN
9
n
27
ASN
9
A
SER
10
n
28
SER
10
A
VAL
11
n
29
VAL
11
A
LEU
12
n
30
LEU
12
A
GLY
13
n
31
GLY
13
A
GLY
14
n
32
GLY
14
A
GLU
15
n
33
GLU
15
A
ILE
16
n
34
ILE
16
A
GLU
17
n
35
GLU
17
A
LYS
18
n
36
LYS
18
A
GLY
19
n
37
GLY
19
A
LEU
20
n
38
LEU
20
A
ASN
21
n
39
ASN
21
A
VAL
22
n
40
VAL
22
A
LYS
23
n
41
LYS
23
A
GLY
24
n
42
GLY
24
A
PHE
25
n
43
PHE
25
A
MSE
26
n
44
MSE
26
A
ALA
27
n
45
ALA
27
A
ASP
28
n
46
ASP
28
A
VAL
29
n
47
VAL
29
A
THR
30
n
48
THR
30
A
GLU
31
n
49
GLU
31
A
SER
32
n
50
SER
32
A
LEU
33
n
51
LEU
33
A
GLU
34
n
52
GLU
34
A
ASP
35
n
53
ASP
35
A
GLY
36
n
54
GLY
36
A
GLU
37
n
55
GLU
37
A
TYR
38
n
56
TYR
38
A
LEU
39
n
57
LEU
39
A
MSE
40
n
58
MSE
40
A
ASP
41
n
59
ASP
41
A
ILE
42
n
60
ILE
42
A
ARG
43
n
61
ARG
43
A
ASN
44
n
62
ASN
44
A
TYR
45
n
63
TYR
45
A
ASP
46
n
64
ASP
46
A
LEU
47
n
65
LEU
47
A
VAL
48
n
66
VAL
48
A
MSE
49
n
67
MSE
49
A
VAL
50
n
68
VAL
50
A
SER
51
n
69
SER
51
A
ASP
52
n
70
ASP
52
A
LYS
53
n
71
LYS
53
A
ASN
54
n
72
ASN
54
A
ALA
55
n
73
ALA
55
A
LEU
56
n
74
LEU
56
A
SER
57
n
75
SER
57
A
PHE
58
n
76
PHE
58
A
VAL
59
n
77
VAL
59
A
SER
60
n
78
SER
60
A
ARG
61
n
79
ARG
61
A
ILE
62
n
80
ILE
62
A
LYS
63
n
81
LYS
63
A
GLU
64
n
82
GLU
64
A
LYS
65
n
83
LYS
65
A
HIS
66
n
84
HIS
66
A
SER
67
n
85
SER
67
A
SER
68
n
86
SER
68
A
ILE
69
n
87
ILE
69
A
VAL
70
n
88
VAL
70
A
VAL
71
n
89
VAL
71
A
LEU
72
n
90
LEU
72
A
VAL
73
n
91
VAL
73
A
SER
74
n
92
SER
74
A
SER
75
n
93
SER
75
A
ASP
76
n
94
ASP
76
A
ASN
77
n
95
ASN
77
A
PRO
78
n
96
PRO
78
A
THR
79
n
97
THR
79
A
SER
80
n
98
SER
80
A
GLU
81
n
99
GLU
81
A
GLU
82
n
100
GLU
82
A
GLU
83
n
101
GLU
83
A
VAL
84
n
102
VAL
84
A
HIS
85
n
103
HIS
85
A
ALA
86
n
104
ALA
86
A
PHE
87
n
105
PHE
87
A
GLU
88
n
106
GLU
88
A
GLN
89
n
107
GLN
89
A
GLY
90
n
108
GLY
90
A
ALA
91
n
109
ALA
91
A
ASP
92
n
110
ASP
92
A
ASP
93
n
111
ASP
93
A
TYR
94
n
112
TYR
94
A
ILE
95
n
113
ILE
95
A
ALA
96
n
114
ALA
96
A
LYS
97
n
115
LYS
97
A
PRO
98
n
116
PRO
98
A
TYR
99
n
117
TYR
99
A
ARG
100
n
118
ARG
100
A
SER
101
n
119
SER
101
A
ILE
102
n
120
ILE
102
A
LYS
103
n
121
LYS
103
A
ALA
104
n
122
ALA
104
A
LEU
105
n
123
LEU
105
A
VAL
106
n
124
VAL
106
A
ALA
107
n
125
ALA
107
A
ARG
108
n
126
ARG
108
A
ILE
109
n
127
ILE
109
A
GLU
110
n
128
GLU
110
A
ALA
111
n
129
ALA
111
A
ARG
112
n
130
ARG
112
A
LEU
113
n
131
LEU
113
A
ARG
114
n
132
ARG
114
A
n
133
115
A
n
134
116
A
n
135
117
A
n
136
118
A
n
137
119
A
author_defined_assembly
2
dimeric
A
MSE
1
SELENOMETHIONINE
A
MSE
19
MET
A
MSE
26
SELENOMETHIONINE
A
MSE
44
MET
A
MSE
40
SELENOMETHIONINE
A
MSE
58
MET
A
MSE
49
SELENOMETHIONINE
A
MSE
67
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-x+1,-y+1,z
crystal symmetry operation
88.9670000000
41.3110000000
0.0000000000
A
O
ASP
28
A
O
ASP
46
A
N
LEU
5
A
N
LEU
23
A
N
ILE
6
A
N
ILE
24
A
O
MSE
49
A
O
MSE
67
A
N
VAL
48
A
N
VAL
66
A
O
LEU
72
A
O
LEU
90
A
N
VAL
73
A
N
VAL
91
A
O
ILE
95
A
O
ILE
113
1
A
MSE
-17
A
MSE
1
1
Y
1
A
ARG
-16
A
ARG
2
1
Y
1
A
GLY
-15
A
GLY
3
1
Y
1
A
SER
-14
A
SER
4
1
Y
1
A
HIS
-13
A
HIS
5
1
Y
1
A
HIS
-12
A
HIS
6
1
Y
1
A
HIS
-11
A
HIS
7
1
Y
1
A
HIS
-10
A
HIS
8
1
Y
1
A
HIS
-9
A
HIS
9
1
Y
1
A
HIS
-8
A
HIS
10
1
Y
1
A
GLY
-7
A
GLY
11
1
Y
1
A
SER
-6
A
SER
12
1
Y
1
A
LEU
-5
A
LEU
13
1
Y
1
A
VAL
-4
A
VAL
14
1
Y
1
A
PHE
115
A
PHE
133
1
Y
1
A
TRP
116
A
TRP
134
1
Y
1
A
GLY
117
A
GLY
135
1
Y
1
A
SER
118
A
SER
136
1
Y
1
A
ASN
119
A
ASN
137
1
Y
1
3.42
0.50
120.30
123.72
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
2
2
2
N
1
-3.86
0.50
120.30
116.44
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
2
2
2
N
1
-13.20
2.20
98.90
85.70
A
A
A
CG
SE
CE
MSE
MSE
MSE
26
26
26
N
1
A
ASN
54
-98.33
34.22
21.15
-1.12000
0.00000
0.00000
-0.99000
0.00000
2.11000
0.944
0.936
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.24
0.206
0.208
1.80
44.50
543
10781
4.800
99.6
6.436
0.091
RANDOM
1
THROUGHOUT
0.000
MAD
0.288
0.134
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
1.80
44.50
78
1003
0
0
925
0.015
0.022
937
1.461
1.976
1259
5.433
5.000
117
39.675
24.186
43
14.640
15.000
180
19.062
15.000
8
0.096
0.200
144
0.006
0.020
689
0.218
0.200
402
0.302
0.200
658
0.176
0.200
64
0.314
0.200
27
0.184
0.200
14
1.564
1.500
601
2.189
2.000
944
3.563
3.000
368
4.617
4.500
315
2.657
3.000
969
6.178
3.000
79
3.007
3.000
926
0.35
0.211
1.85
44
749
20
96.35
1.800
50.000
2PLN
11373
0
0.000
0.099
1
7.3
99.9
1.80
1.86
0.368
7.2
100.0
phasing
SOLVE
refinement
REFMAC
5.2.0003
data collection
HKL-2000
data reduction
DENZO
data scaling
SCALEPACK
Response regulator
Crystal structure analysis of HP1043, an orphan resonse regulator of h. pylori
1
N
N
2
N
N
A
ASN
9
A
ASN
27
HELX_P
A
LYS
23
A
LYS
41
1
1
15
A
SER
32
A
SER
50
HELX_P
A
ARG
43
A
ARG
61
1
2
12
A
ASN
54
A
ASN
72
HELX_P
A
HIS
66
A
HIS
84
1
3
13
A
THR
79
A
THR
97
HELX_P
A
GLN
89
A
GLN
107
1
4
11
A
SER
101
A
SER
119
HELX_P
A
LEU
113
A
LEU
131
1
5
13
covale
1.330
A
SER
0
A
C
SER
18
1_555
A
MSE
1
A
N
MSE
19
1_555
covale
1.328
A
MSE
1
A
C
MSE
19
1_555
A
ARG
2
A
N
ARG
20
1_555
covale
1.330
A
PHE
25
A
C
PHE
43
1_555
A
MSE
26
A
N
MSE
44
1_555
covale
1.335
A
MSE
26
A
C
MSE
44
1_555
A
ALA
27
A
N
ALA
45
1_555
covale
1.332
A
LEU
39
A
C
LEU
57
1_555
A
MSE
40
A
N
MSE
58
1_555
covale
1.331
A
MSE
40
A
C
MSE
58
1_555
A
ASP
41
A
N
ASP
59
1_555
covale
1.332
A
VAL
48
A
C
VAL
66
1_555
A
MSE
49
A
N
MSE
67
1_555
covale
1.323
A
MSE
49
A
C
MSE
67
1_555
A
VAL
50
A
N
VAL
68
1_555
SIGNALING PROTEIN
HP1043, SIGNALING PROTEIN
A
LYS
97
A
LYS
115
1
A
PRO
98
A
PRO
116
-1.85
O25684_HELPY
UNP
1
1
O25684
MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVSDKNALSFVSRIKEKHSSIVVLVSSDNPTS
EEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSN
1
119
2PLN
1
119
O25684
A
1
19
137
1
EXPRESSION TAG
MSE
-17
2PLN
A
O25684
UNP
1
1
EXPRESSION TAG
ARG
-16
2PLN
A
O25684
UNP
2
1
EXPRESSION TAG
GLY
-15
2PLN
A
O25684
UNP
3
1
EXPRESSION TAG
SER
-14
2PLN
A
O25684
UNP
4
1
EXPRESSION TAG
HIS
-13
2PLN
A
O25684
UNP
5
1
EXPRESSION TAG
HIS
-12
2PLN
A
O25684
UNP
6
1
EXPRESSION TAG
HIS
-11
2PLN
A
O25684
UNP
7
1
EXPRESSION TAG
HIS
-10
2PLN
A
O25684
UNP
8
1
EXPRESSION TAG
HIS
-9
2PLN
A
O25684
UNP
9
1
EXPRESSION TAG
HIS
-8
2PLN
A
O25684
UNP
10
1
EXPRESSION TAG
GLY
-7
2PLN
A
O25684
UNP
11
1
EXPRESSION TAG
SER
-6
2PLN
A
O25684
UNP
12
1
EXPRESSION TAG
LEU
-5
2PLN
A
O25684
UNP
13
1
EXPRESSION TAG
VAL
-4
2PLN
A
O25684
UNP
14
1
EXPRESSION TAG
PRO
-3
2PLN
A
O25684
UNP
15
1
EXPRESSION TAG
ARG
-2
2PLN
A
O25684
UNP
16
1
EXPRESSION TAG
GLY
-1
2PLN
A
O25684
UNP
17
1
EXPRESSION TAG
SER
0
2PLN
A
O25684
UNP
18
1
MET
MODIFIED RESIDUE
MSE
1
2PLN
A
O25684
UNP
1
19
1
MET
MODIFIED RESIDUE
MSE
26
2PLN
A
O25684
UNP
26
44
1
MET
MODIFIED RESIDUE
MSE
40
2PLN
A
O25684
UNP
40
58
1
MET
MODIFIED RESIDUE
MSE
49
2PLN
A
O25684
UNP
49
67
5
parallel
parallel
parallel
parallel
A
MSE
26
A
MSE
44
A
THR
30
A
THR
48
A
ARG
2
A
ARG
20
A
ILE
6
A
ILE
24
A
LEU
47
A
LEU
65
A
VAL
50
A
VAL
68
A
VAL
70
A
VAL
88
A
SER
75
A
SER
93
A
ASP
93
A
ASP
111
A
ALA
96
A
ALA
114
18
P 21 21 2