0.012995 0.007503 0.000000 0.000000 0.015005 0.000000 0.000000 0.000000 0.007334 0.000000 0.000000 0.000000 Paetzel, M. Lee, J. Feldman, A.R. Delmas, B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.000 90.000 120.000 76.953 76.953 136.347 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 282 24928 24937 10.1074/jbc.M701551200 17553791 Crystal structure of the VP4 protease from infectious pancreatic necrosis virus reveals the acyl-enzyme complex for an intermolecular self-cleavage reaction. 2007 DK Acta Crystallogr.,Sect.F 1744-3091 F62 1235 1238 10.1107/S1744309106046070 17142905 Purification, crystallization and preliminary X-ray analysis of truncated and mutant forms of VP4 protease from infectious pancreatic necrosis virus. 2006 10.2210/pdb2pnm/pdb pdb_00002pnm 100 1 mirrors CCD 2006-04-23 ADSC QUANTUM 4 GRAPHITE SINGLE WAVELENGTH M x-ray 1 0.9792 1.0 X8C NSLS 0.9792 SYNCHROTRON NSLS BEAMLINE X8C 20593.791 Protease VP4 3.4.21.- VP4hex (residues 524-716) K674A 1 man polymer 18.015 water 159 nat water no yes LESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDN (MSE)CYTALPLKEIKRNGNIVVEKIFAGPI(MSE)GPSAQLGLSLLVNDIEDGVPR(MSE)VFTGEIADDEETIIPICG VDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA LESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNM CYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIAAIAAHEQGL PLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Aquabirnavirus Infectious pancreatic necrosis virus serotype SP Escherichia Escherichia coli sample 11005 Infectious pancreatic necrosis virus - Sp 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pET24a 1 2.83 56.50 VAPOR DIFFUSION, SITTING DROP 8.5 0.1M Tris-HCl pH 8.5, 22% PEG 2000 MME, 0.45M Calcium acetate, VAPOR DIFFUSION, SITTING DROP, temperature 291K 291 database_2 struct_conn struct_ref_seq_dif repository Initial release Version format compliance Advisory Version format compliance Database references Derived calculations 1 0 2007-06-05 1 1 2007-10-08 1 2 2011-07-13 1 3 2021-10-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details VP4 protease from another birnavirus (blotched snakehead virus, BSNV) VP4 from IPNV in the space group P1 (acyl-enzyme) RCSB Y RCSB 2007-04-24 REL REL HOH water HOH 1 2 HOH HOH 717 A HOH 2 2 HOH HOH 718 A HOH 3 2 HOH HOH 719 A HOH 4 2 HOH HOH 720 A HOH 5 2 HOH HOH 721 A HOH 6 2 HOH HOH 722 A HOH 7 2 HOH HOH 723 A HOH 8 2 HOH HOH 724 A HOH 9 2 HOH HOH 725 A HOH 10 2 HOH HOH 726 A HOH 11 2 HOH HOH 727 A HOH 12 2 HOH HOH 728 A HOH 13 2 HOH HOH 729 A HOH 14 2 HOH HOH 730 A HOH 15 2 HOH HOH 731 A HOH 16 2 HOH HOH 732 A HOH 17 2 HOH HOH 733 A HOH 18 2 HOH HOH 734 A HOH 19 2 HOH HOH 735 A HOH 20 2 HOH HOH 736 A HOH 21 2 HOH HOH 737 A HOH 22 2 HOH HOH 738 A HOH 23 2 HOH HOH 739 A HOH 24 2 HOH HOH 740 A HOH 25 2 HOH HOH 741 A HOH 26 2 HOH HOH 742 A HOH 27 2 HOH HOH 743 A HOH 28 2 HOH HOH 744 A HOH 29 2 HOH HOH 745 A HOH 30 2 HOH HOH 746 A HOH 31 2 HOH HOH 747 A HOH 32 2 HOH HOH 748 A HOH 33 2 HOH HOH 749 A HOH 34 2 HOH HOH 750 A HOH 35 2 HOH HOH 751 A HOH 36 2 HOH HOH 752 A HOH 37 2 HOH HOH 753 A HOH 38 2 HOH HOH 754 A HOH 39 2 HOH HOH 755 A HOH 40 2 HOH HOH 756 A HOH 41 2 HOH HOH 757 A HOH 42 2 HOH HOH 758 A HOH 43 2 HOH HOH 759 A HOH 44 2 HOH HOH 760 A HOH 45 2 HOH HOH 761 A HOH 46 2 HOH HOH 762 A HOH 47 2 HOH HOH 763 A HOH 48 2 HOH HOH 764 A HOH 49 2 HOH HOH 765 A HOH 50 2 HOH HOH 766 A HOH 51 2 HOH HOH 767 A HOH 52 2 HOH HOH 768 A HOH 53 2 HOH HOH 769 A HOH 54 2 HOH HOH 770 A HOH 55 2 HOH HOH 771 A HOH 56 2 HOH HOH 772 A HOH 57 2 HOH HOH 773 A HOH 58 2 HOH HOH 774 A HOH 59 2 HOH HOH 775 A HOH 60 2 HOH HOH 776 A HOH 61 2 HOH HOH 777 A HOH 62 2 HOH HOH 778 A HOH 63 2 HOH HOH 779 A HOH 64 2 HOH HOH 780 A HOH 65 2 HOH HOH 781 A HOH 66 2 HOH HOH 782 A HOH 67 2 HOH HOH 783 A HOH 68 2 HOH HOH 784 A HOH 69 2 HOH HOH 785 A HOH 70 2 HOH HOH 786 A HOH 71 2 HOH HOH 787 A HOH 72 2 HOH HOH 788 A HOH 73 2 HOH HOH 789 A HOH 74 2 HOH HOH 790 A HOH 75 2 HOH HOH 791 A HOH 76 2 HOH HOH 792 A HOH 77 2 HOH HOH 793 A HOH 78 2 HOH HOH 794 A HOH 79 2 HOH HOH 795 A HOH 80 2 HOH HOH 796 A HOH 81 2 HOH HOH 797 A HOH 82 2 HOH HOH 798 A HOH 83 2 HOH HOH 799 A HOH 84 2 HOH HOH 800 A HOH 85 2 HOH HOH 801 A HOH 86 2 HOH HOH 802 A HOH 87 2 HOH HOH 803 A HOH 88 2 HOH HOH 804 A HOH 89 2 HOH HOH 805 A HOH 90 2 HOH HOH 806 A HOH 91 2 HOH HOH 807 A HOH 92 2 HOH HOH 808 A HOH 93 2 HOH HOH 809 A HOH 94 2 HOH HOH 810 A HOH 95 2 HOH HOH 811 A HOH 96 2 HOH HOH 812 A HOH 97 2 HOH HOH 813 A HOH 98 2 HOH HOH 814 A HOH 99 2 HOH HOH 815 A HOH 100 2 HOH HOH 816 A HOH 101 2 HOH HOH 817 A HOH 102 2 HOH HOH 818 A HOH 103 2 HOH HOH 819 A HOH 104 2 HOH HOH 820 A HOH 105 2 HOH HOH 821 A HOH 106 2 HOH HOH 822 A HOH 107 2 HOH HOH 823 A HOH 108 2 HOH HOH 824 A HOH 109 2 HOH HOH 825 A HOH 110 2 HOH HOH 826 A HOH 111 2 HOH HOH 827 A HOH 112 2 HOH HOH 828 A HOH 113 2 HOH HOH 829 A HOH 114 2 HOH HOH 830 A HOH 115 2 HOH HOH 831 A HOH 116 2 HOH HOH 832 A HOH 117 2 HOH HOH 833 A HOH 118 2 HOH HOH 834 A HOH 119 2 HOH HOH 835 A HOH 120 2 HOH HOH 836 A HOH 121 2 HOH HOH 837 A HOH 122 2 HOH HOH 838 A HOH 123 2 HOH HOH 839 A HOH 124 2 HOH HOH 840 A HOH 125 2 HOH HOH 841 A HOH 126 2 HOH HOH 842 A HOH 127 2 HOH HOH 843 A HOH 128 2 HOH HOH 844 A HOH 129 2 HOH HOH 845 A HOH 130 2 HOH HOH 846 A HOH 131 2 HOH HOH 847 A HOH 132 2 HOH HOH 848 A HOH 133 2 HOH HOH 849 A HOH 134 2 HOH HOH 850 A HOH 135 2 HOH HOH 851 A HOH 136 2 HOH HOH 852 A HOH 137 2 HOH HOH 853 A HOH 138 2 HOH HOH 854 A HOH 139 2 HOH HOH 855 A HOH 140 2 HOH HOH 856 A HOH 141 2 HOH HOH 857 A HOH 142 2 HOH HOH 858 A HOH 143 2 HOH HOH 859 A HOH 144 2 HOH HOH 860 A HOH 145 2 HOH HOH 861 A HOH 146 2 HOH HOH 862 A HOH 147 2 HOH HOH 863 A HOH 148 2 HOH HOH 864 A HOH 149 2 HOH HOH 865 A HOH 150 2 HOH HOH 866 A HOH 151 2 HOH HOH 867 A HOH 152 2 HOH HOH 868 A HOH 153 2 HOH HOH 869 A HOH 154 2 HOH HOH 870 A HOH 155 2 HOH HOH 871 A HOH 156 2 HOH HOH 872 A HOH 157 2 HOH HOH 873 A HOH 158 2 HOH HOH 874 A HOH 159 2 HOH HOH 875 A LEU 524 n 1 LEU 524 A GLU 525 n 2 GLU 525 A SER 526 n 3 SER 526 A ALA 527 n 4 ALA 527 A ASN 528 n 5 ASN 528 A TYR 529 n 6 TYR 529 A GLU 530 n 7 GLU 530 A GLU 531 n 8 GLU 531 A VAL 532 n 9 VAL 532 A GLU 533 n 10 GLU 533 A LEU 534 n 11 LEU 534 A PRO 535 n 12 PRO 535 A PRO 536 n 13 PRO 536 A PRO 537 n 14 PRO 537 A SER 538 n 15 SER 538 A LYS 539 n 16 LYS 539 A GLY 540 n 17 GLY 540 A VAL 541 n 18 VAL 541 A ILE 542 n 19 ILE 542 A VAL 543 n 20 VAL 543 A PRO 544 n 21 PRO 544 A VAL 545 n 22 VAL 545 A VAL 546 n 23 VAL 546 A HIS 547 n 24 HIS 547 A n 25 548 A n 26 549 A n 27 550 A n 28 551 A n 29 552 A n 30 553 A n 31 554 A GLU 555 n 32 GLU 555 A ALA 556 n 33 ALA 556 A PHE 557 n 34 PHE 557 A GLY 558 n 35 GLY 558 A SER 559 n 36 SER 559 A LEU 560 n 37 LEU 560 A ALA 561 n 38 ALA 561 A ILE 562 n 39 ILE 562 A ILE 563 n 40 ILE 563 A ILE 564 n 41 ILE 564 A PRO 565 n 42 PRO 565 A GLY 566 n 43 GLY 566 A GLU 567 n 44 GLU 567 A TYR 568 n 45 TYR 568 A PRO 569 n 46 PRO 569 A GLU 570 n 47 GLU 570 A LEU 571 n 48 LEU 571 A LEU 572 n 49 LEU 572 A ASP 573 n 50 ASP 573 A ALA 574 n 51 ALA 574 A ASN 575 n 52 ASN 575 A GLN 576 n 53 GLN 576 A GLN 577 n 54 GLN 577 A VAL 578 n 55 VAL 578 A LEU 579 n 56 LEU 579 A SER 580 n 57 SER 580 A HIS 581 n 58 HIS 581 A PHE 582 n 59 PHE 582 A ALA 583 n 60 ALA 583 A ASN 584 n 61 ASN 584 A ASP 585 n 62 ASP 585 A THR 586 n 63 THR 586 A GLY 587 n 64 GLY 587 A SER 588 n 65 SER 588 A VAL 589 n 66 VAL 589 A TRP 590 n 67 TRP 590 A GLY 591 n 68 GLY 591 A ILE 592 n 69 ILE 592 A GLY 593 n 70 GLY 593 A GLU 594 n 71 GLU 594 A ASP 595 n 72 ASP 595 A ILE 596 n 73 ILE 596 A PRO 597 n 74 PRO 597 A PHE 598 n 75 PHE 598 A GLU 599 n 76 GLU 599 A GLY 600 n 77 GLY 600 A ASP 601 n 78 ASP 601 A ASN 602 n 79 ASN 602 A MSE 603 n 80 MSE 603 A CYS 604 n 81 CYS 604 A TYR 605 n 82 TYR 605 A THR 606 n 83 THR 606 A ALA 607 n 84 ALA 607 A LEU 608 n 85 LEU 608 A PRO 609 n 86 PRO 609 A LEU 610 n 87 LEU 610 A LYS 611 n 88 LYS 611 A GLU 612 n 89 GLU 612 A ILE 613 n 90 ILE 613 A LYS 614 n 91 LYS 614 A ALA 615 n 92 ARG 615 A ASN 616 n 93 ASN 616 A GLY 617 n 94 GLY 617 A ASN 618 n 95 ASN 618 A ILE 619 n 96 ILE 619 A VAL 620 n 97 VAL 620 A VAL 621 n 98 VAL 621 A GLU 622 n 99 GLU 622 A LYS 623 n 100 LYS 623 A ILE 624 n 101 ILE 624 A PHE 625 n 102 PHE 625 A ALA 626 n 103 ALA 626 A GLY 627 n 104 GLY 627 A PRO 628 n 105 PRO 628 A ILE 629 n 106 ILE 629 A MSE 630 n 107 MSE 630 A GLY 631 n 108 GLY 631 A PRO 632 n 109 PRO 632 A SER 633 n 110 SER 633 A ALA 634 n 111 ALA 634 A GLN 635 n 112 GLN 635 A LEU 636 n 113 LEU 636 A GLY 637 n 114 GLY 637 A LEU 638 n 115 LEU 638 A SER 639 n 116 SER 639 A LEU 640 n 117 LEU 640 A LEU 641 n 118 LEU 641 A VAL 642 n 119 VAL 642 A ASN 643 n 120 ASN 643 A ASP 644 n 121 ASP 644 A ILE 645 n 122 ILE 645 A GLU 646 n 123 GLU 646 A ASP 647 n 124 ASP 647 A GLY 648 n 125 GLY 648 A VAL 649 n 126 VAL 649 A PRO 650 n 127 PRO 650 A ARG 651 n 128 ARG 651 A MSE 652 n 129 MSE 652 A VAL 653 n 130 VAL 653 A PHE 654 n 131 PHE 654 A THR 655 n 132 THR 655 A GLY 656 n 133 GLY 656 A GLU 657 n 134 GLU 657 A ILE 658 n 135 ILE 658 A ALA 659 n 136 ALA 659 A ASP 660 n 137 ASP 660 A ASP 661 n 138 ASP 661 A GLU 662 n 139 GLU 662 A GLU 663 n 140 GLU 663 A THR 664 n 141 THR 664 A ILE 665 n 142 ILE 665 A ILE 666 n 143 ILE 666 A PRO 667 n 144 PRO 667 A ILE 668 n 145 ILE 668 A CYS 669 n 146 CYS 669 A GLY 670 n 147 GLY 670 A VAL 671 n 148 VAL 671 A ASP 672 n 149 ASP 672 A ILE 673 n 150 ILE 673 A ALA 674 n 151 ALA 674 A ALA 675 n 152 ALA 675 A ILE 676 n 153 ILE 676 A ALA 677 n 154 ALA 677 A ALA 678 n 155 ALA 678 A HIS 679 n 156 HIS 679 A GLU 680 n 157 GLU 680 A GLN 681 n 158 GLN 681 A GLY 682 n 159 GLY 682 A LEU 683 n 160 LEU 683 A PRO 684 n 161 PRO 684 A LEU 685 n 162 LEU 685 A ILE 686 n 163 ILE 686 A GLY 687 n 164 GLY 687 A ASN 688 n 165 ASN 688 A GLN 689 n 166 GLN 689 A PRO 690 n 167 PRO 690 A GLY 691 n 168 GLY 691 A VAL 692 n 169 VAL 692 A ASP 693 n 170 ASP 693 A GLU 694 n 171 GLU 694 A GLU 695 n 172 GLU 695 A VAL 696 n 173 VAL 696 A ALA 697 n 174 ARG 697 A ASN 698 n 175 ASN 698 A THR 699 n 176 THR 699 A SER 700 n 177 SER 700 A LEU 701 n 178 LEU 701 A ALA 702 n 179 ALA 702 A ALA 703 n 180 ALA 703 A HIS 704 n 181 HIS 704 A LEU 705 n 182 LEU 705 A ILE 706 n 183 ILE 706 A GLN 707 n 184 GLN 707 A THR 708 n 185 THR 708 A GLY 709 n 186 GLY 709 A THR 710 n 187 THR 710 A LEU 711 n 188 LEU 711 A n 189 712 A n 190 713 A n 191 714 A n 192 715 A n 193 716 A 10.4332 -0.9068 19.1667 6.0134 -13.7902 59.9802 0.4810 1.9647 -0.0633 0.2684 -2.5608 -1.8074 0.7832 3.5542 2.0798 0.0335 0.0847 -0.0650 0.1495 0.0495 0.2112 refined 21.1153 -10.9250 -4.3224 X-RAY DIFFRACTION 2.3896 1.7772 0.7575 2.8574 -1.0352 2.4443 0.1001 -0.0105 0.0116 0.1565 0.0027 -0.0275 0.0201 0.0445 -0.1028 0.0508 0.0037 -0.0350 0.0215 -0.0026 0.0490 refined 6.3221 -15.6809 -9.9954 X-RAY DIFFRACTION 21.5356 1.5667 11.7471 10.5080 26.7290 70.8178 0.3417 -1.4330 1.1332 1.1197 -0.9614 0.0476 -3.7158 1.1746 0.6197 0.4876 -0.4497 0.0037 0.2179 0.0425 -0.0821 refined 1.1988 -16.2132 7.9786 X-RAY DIFFRACTION 8.0595 0.9780 -3.3920 1.5605 -0.1851 7.4804 0.2814 -0.2098 -0.3623 -0.0563 0.0966 -0.2622 0.3771 0.2344 -0.3780 0.0806 -0.0323 -0.0750 0.0022 -0.0184 0.0386 refined 8.0194 -20.9752 -7.9427 X-RAY DIFFRACTION 7.9079 3.2007 6.5021 10.1286 6.4649 15.1535 0.0976 0.7854 -0.1886 -0.5469 0.5139 -0.2051 -0.1506 1.1165 -0.6114 0.0233 0.0090 -0.0431 0.0166 -0.0650 0.0163 refined 16.2330 -16.0001 -5.9110 X-RAY DIFFRACTION 2.2408 2.8782 2.1089 4.0574 1.8614 3.9762 0.3713 0.0955 -0.6261 0.3347 0.2165 -0.4004 0.8631 0.5275 -0.5878 0.1384 0.0878 -0.1945 -0.0539 -0.0671 0.1190 refined 15.4114 -27.9351 -2.6099 X-RAY DIFFRACTION 0.2742 -0.2491 1.2726 6.8589 -4.4238 7.5169 0.4205 0.2228 -0.6434 0.2006 0.3691 -0.3180 1.2348 0.1234 -0.7896 0.2533 0.0739 -0.2735 -0.1646 -0.0952 0.1496 refined 11.0429 -35.9201 -6.4777 X-RAY DIFFRACTION 11.5063 -2.8442 5.3630 10.9494 -1.1927 2.5014 0.5030 0.7434 -0.4375 -0.5226 -0.0522 -0.6154 0.2525 0.3035 -0.4508 0.0691 0.0027 -0.0471 0.0218 -0.0114 0.0693 refined 10.2576 -22.1995 -8.4629 X-RAY DIFFRACTION 4.3932 2.1386 7.8081 3.5074 -0.2788 20.6267 -0.1789 0.1087 0.2684 0.0105 0.0876 0.3391 -0.3520 -0.2119 0.0913 -0.0120 0.0025 -0.0213 -0.0281 0.0209 0.0615 refined 0.3128 -10.9620 -13.2234 X-RAY DIFFRACTION 4.2008 -0.0712 8.6935 0.1763 0.5183 20.5215 0.0901 -0.1353 -0.0152 0.1059 0.1242 0.0515 -0.0443 -0.3097 -0.2143 0.0140 -0.0319 -0.0360 -0.0047 0.0013 0.0826 refined 8.7852 -11.5491 -2.9362 X-RAY DIFFRACTION 1.6482 -0.1884 0.4285 2.8418 0.8671 1.2529 0.7128 -0.5875 -0.2482 0.5985 -0.3595 0.0751 1.0652 -0.2901 -0.3533 0.2005 -0.0807 -0.1690 -0.0534 0.0574 0.0098 refined 7.4994 -25.2787 3.6909 X-RAY DIFFRACTION 3.6338 1.1498 1.1961 3.2545 2.8027 7.0625 0.1913 0.2187 -0.7651 0.0102 0.0719 -0.1353 0.8220 -0.0926 -0.2632 0.1879 -0.0532 -0.1793 -0.0902 0.0268 0.1090 refined 2.9733 -32.2240 -9.0907 X-RAY DIFFRACTION 28.9802 -8.1801 -6.4585 9.3094 2.3266 15.2791 -0.0210 1.3867 -0.4489 -0.3337 -0.2044 0.1593 0.9058 -0.3391 0.2254 0.1597 -0.0780 -0.1093 0.0716 0.0298 0.0452 refined -0.7621 -24.1751 -16.0097 X-RAY DIFFRACTION 2.2150 0.2231 0.8787 1.6708 1.9198 2.3832 0.5006 -0.4407 -0.4744 0.5837 -0.1219 0.1565 0.8075 -0.4158 -0.3786 0.2342 -0.1834 -0.1283 -0.0115 0.0802 -0.0231 refined -1.8673 -30.1760 -2.5554 X-RAY DIFFRACTION 7.4756 -7.2353 -3.4130 13.6330 2.6076 9.6195 0.2075 -0.7762 -1.0556 0.8189 0.3894 0.0635 1.5263 0.0577 -0.5968 0.3068 -0.2748 -0.2624 -0.1029 0.1631 0.0433 refined -1.9529 -36.1388 1.2816 X-RAY DIFFRACTION 3.8597 -5.8557 2.3130 13.5516 -4.5968 1.6395 0.5263 -0.6711 -0.0271 1.0681 -0.1090 0.6112 -0.0408 -0.8693 -0.4173 0.0568 -0.1606 0.0442 0.2044 0.0142 -0.0619 refined -6.9860 -18.4331 2.5434 X-RAY DIFFRACTION 14.0194 6.6928 0.5778 10.4409 -4.6187 3.3300 0.0552 -0.1556 0.5542 0.4880 0.0182 0.3365 -0.1288 -0.6572 -0.0734 0.0060 -0.0442 0.0118 0.1162 0.0185 -0.0310 refined -6.8078 -17.3037 -4.3581 X-RAY DIFFRACTION 1.1385 0.8885 1.4605 4.7595 -1.7303 3.8997 0.5289 -0.4723 -0.3559 0.3668 0.0106 0.5677 0.7695 -1.0494 -0.5395 0.1096 -0.2543 -0.0130 0.1527 0.0784 -0.0105 refined -10.0336 -28.5177 0.5611 X-RAY DIFFRACTION 6.1249 -1.7067 3.3257 7.3558 0.5456 6.9028 0.7375 -0.6140 -0.5638 0.0094 -0.1648 0.7543 0.5926 -0.8481 -0.5728 0.1199 -0.2286 -0.1875 -0.0361 0.1034 0.1090 refined -8.8069 -33.8536 -7.9715 X-RAY DIFFRACTION 16.0323 1.0525 12.8750 22.7602 -2.2856 22.8647 0.1082 -0.2069 0.8279 0.2932 -0.1164 0.2992 0.2567 -1.6994 0.0083 0.0727 -0.1911 -0.1038 0.0094 0.0714 -0.0570 refined -10.9331 -26.7777 -14.0120 X-RAY DIFFRACTION A 524 A 1 A 528 A 5 X-RAY DIFFRACTION 1 ALL A 529 A 6 A 545 A 22 X-RAY DIFFRACTION 2 ALL A 546 A 23 A 558 A 35 X-RAY DIFFRACTION 3 ALL A 559 A 36 A 567 A 44 X-RAY DIFFRACTION 4 ALL A 568 A 45 A 573 A 50 X-RAY DIFFRACTION 5 ALL A 574 A 51 A 594 A 71 X-RAY DIFFRACTION 6 ALL A 595 A 72 A 602 A 79 X-RAY DIFFRACTION 7 ALL A 603 A 80 A 610 A 87 X-RAY DIFFRACTION 8 ALL A 611 A 88 A 618 A 95 X-RAY DIFFRACTION 9 ALL A 619 A 96 A 625 A 102 X-RAY DIFFRACTION 10 ALL A 626 A 103 A 634 A 111 X-RAY DIFFRACTION 11 ALL A 635 A 112 A 645 A 122 X-RAY DIFFRACTION 12 ALL A 646 A 123 A 651 A 128 X-RAY DIFFRACTION 13 ALL A 652 A 129 A 659 A 136 X-RAY DIFFRACTION 14 ALL A 660 A 137 A 671 A 148 X-RAY DIFFRACTION 15 ALL A 672 A 149 A 679 A 156 X-RAY DIFFRACTION 16 ALL A 680 A 157 A 685 A 162 X-RAY DIFFRACTION 17 ALL A 686 A 163 A 693 A 170 X-RAY DIFFRACTION 18 ALL A 694 A 171 A 705 A 182 X-RAY DIFFRACTION 19 ALL A 706 A 183 A 711 A 188 X-RAY DIFFRACTION 20 ALL author_defined_assembly 1 monomeric A MSE 603 SELENOMETHIONINE A MSE 80 MET A MSE 630 SELENOMETHIONINE A MSE 107 MET A MSE 652 SELENOMETHIONINE A MSE 129 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 534 A N LEU 11 A O ILE 619 A O ILE 96 A O VAL 620 A O VAL 97 A N GLU 612 A N GLU 89 A O LEU 608 A O LEU 85 A N ILE 562 A N ILE 39 A O PHE 557 A O PHE 34 A N HIS 547 A N HIS 24 A N LEU 534 A N LEU 11 A O ILE 619 A O ILE 96 A O VAL 620 A O VAL 97 A N GLU 612 A N GLU 89 A O ALA 607 A O ALA 84 A N TRP 590 A N TRP 67 A O VAL 589 A O VAL 66 A N SER 580 A N SER 57 A N HIS 581 A N HIS 58 A O ILE 596 A O ILE 73 A N VAL 653 A N VAL 130 A O ILE 686 A O ILE 163 A N GLY 687 A N GLY 164 A O GLU 694 A O GLU 171 A N GLU 657 A N GLU 134 A O ILE 666 A O ILE 143 1 A CG GLU 555 A CG GLU 32 1 Y 1 A CD GLU 555 A CD GLU 32 1 Y 1 A OE1 GLU 555 A OE1 GLU 32 1 Y 1 A OE2 GLU 555 A OE2 GLU 32 1 Y 1 A CG ARG 615 A CG ARG 92 1 Y 1 A CD ARG 615 A CD ARG 92 1 Y 1 A NE ARG 615 A NE ARG 92 1 Y 1 A CZ ARG 615 A CZ ARG 92 1 Y 1 A NH1 ARG 615 A NH1 ARG 92 1 Y 1 A NH2 ARG 615 A NH2 ARG 92 1 Y 1 A CG ARG 697 A CG ARG 174 1 Y 1 A CD ARG 697 A CD ARG 174 1 Y 1 A NE ARG 697 A NE ARG 174 1 Y 1 A CZ ARG 697 A CZ ARG 174 1 Y 1 A NH1 ARG 697 A NH1 ARG 174 1 Y 1 A NH2 ARG 697 A NH2 ARG 174 1 Y 1 A THR 548 A THR 25 1 Y 1 A VAL 549 A VAL 26 1 Y 1 A LYS 550 A LYS 27 1 Y 1 A SER 551 A SER 28 1 Y 1 A ALA 552 A ALA 29 1 Y 1 A PRO 553 A PRO 30 1 Y 1 A GLY 554 A GLY 31 1 Y 1 A PRO 712 A PRO 189 1 Y 1 A VAL 713 A VAL 190 1 Y 1 A GLN 714 A GLN 191 1 Y 1 A ARG 715 A ARG 192 1 Y 1 A ALA 716 A ALA 193 1 Y 1 A A O O HOH HOH 778 820 2.05 1 A ALA 556 -47.64 156.66 1 A GLU 612 -172.83 148.76 1 A GLU 663 -142.67 -43.57 1 A THR 710 -140.31 -152.60 23.945 0.020 0.010 0.000 0.020 0.000 -0.030 0.943 0.912 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.235 0.182 0.200 0.184 2.300 25.52 538 11248 11186 4.800 99.840 9.271 0.123 RANDOM LIKELY RESIDUAL 1 Isotropic THROUGHOUT 0.00 SAD 0.242 0.207 0.800 0.800 1.400 MAXIMUM LIKELIHOOD MASK 2.300 25.52 159 1496 0 0 1337 0.015 0.022 1367 1.476 1.983 1869 5.954 5.000 179 39.848 27.368 57 14.255 15.000 212 5.175 15.000 1 0.100 0.200 221 0.005 0.020 1042 0.214 0.200 606 0.307 0.200 944 0.179 0.200 145 0.220 0.200 25 0.220 0.200 17 0.924 1.500 927 1.434 2.000 1454 2.001 3.000 490 2.910 4.500 415 0.234 0.170 2.360 44 750 794 20 99.750 2.3 47.7 2PNM 11248 11248 2.0 2.0 0.076 0.076 1 23.5 11.5 99.9 0.186 2.30 2.42 9.8 1584 1 11.9 99.8 refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program 5.2.0019 data extraction PDB sw-help@rcsb.rutgers.edu April. 3, 2006 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 2.000 data collection HKL-2000 data reduction HKL-2000 data scaling HKL-2000 phasing SHARP N Crystal Structure of VP4 protease from infectious pancreatic necrosis virus (IPNV) in space group P6122 1 N N 2 N N This enzymes is a monomer in solution during purification. A TYR 568 A TYR 45 HELX_P A LEU 572 A LEU 49 5 1 5 A ASP 573 A ASP 50 HELX_P A GLN 577 A GLN 54 5 2 5 A ALA 634 A ALA 111 HELX_P A ASP 644 A ASP 121 1 3 11 A GLY 670 A GLY 147 HELX_P A GLU 680 A GLU 157 1 4 11 A ASN 698 A ASN 175 HELX_P A GLY 709 A GLY 186 1 5 12 covale 1.328 both A ASN 602 A C ASN 79 1_555 A MSE 603 A N MSE 80 1_555 covale 1.321 both A MSE 603 A C MSE 80 1_555 A CYS 604 A N CYS 81 1_555 covale 1.332 both A ILE 629 A C ILE 106 1_555 A MSE 630 A N MSE 107 1_555 covale 1.328 both A MSE 630 A C MSE 107 1_555 A GLY 631 A N GLY 108 1_555 covale 1.336 both A ARG 651 A C ARG 128 1_555 A MSE 652 A N MSE 129 1_555 covale 1.329 both A MSE 652 A C MSE 129 1_555 A VAL 653 A N VAL 130 1_555 HYDROLASE protease, Ser/Lys dyad, viral protease, hydrolase POLS_IPNVS UNP 1 524 Q703G9 LESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNM CYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGL PLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 524 716 2PNM 524 716 Q703G9 A 1 1 193 1 MET modified residue MSE 603 2PNM A Q703G9 UNP 603 80 1 MET modified residue MSE 630 2PNM A Q703G9 UNP 630 107 1 MET modified residue MSE 652 2PNM A Q703G9 UNP 652 129 1 LYS engineered mutation ALA 674 2PNM A Q703G9 UNP 674 151 5 6 3 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel parallel parallel anti-parallel A VAL 532 A VAL 9 A LEU 534 A LEU 11 A ILE 619 A ILE 96 A VAL 621 A VAL 98 A MSE 603 A MSE 80 A ILE 613 A ILE 90 A PHE 557 A PHE 34 A PRO 565 A PRO 42 A VAL 541 A VAL 18 A HIS 547 A HIS 24 A VAL 532 A VAL 9 A LEU 534 A LEU 11 A ILE 619 A ILE 96 A VAL 621 A VAL 98 A MSE 603 A MSE 80 A ILE 613 A ILE 90 A GLY 587 A GLY 64 A TRP 590 A TRP 67 A LEU 579 A LEU 56 A ALA 583 A ALA 60 A ILE 596 A ILE 73 A GLU 599 A GLU 76 A VAL 653 A VAL 130 A PHE 654 A PHE 131 A LEU 685 A LEU 162 A GLY 687 A GLY 164 A GLU 694 A GLU 171 A GLU 695 A GLU 172 A GLU 657 A GLU 134 A ILE 658 A ILE 135 A ILE 665 A ILE 142 A ILE 666 A ILE 143 178 P 61 2 2