0.015723 0.000000 0.000000 0.000000 0.013089 0.000000 0.000000 0.000000 0.010560 0.00000 0.00000 0.00000 Bryson, S. Julien, J.-P. Pai, E.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 63.600 76.400 94.700 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 384 377 392 10.1016/j.jmb.2008.09.024 18824005 Structural details of HIV-1 recognition by the broadly neutralizing monoclonal antibody 2F5: epitope conformation, antigen-recognition loop mobility, and anion-binding site. 2008 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 105 1 AREA DETECTOR 1998-10-01 SIEMENS NI FILTER SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 23363.844 nmAb 2F5 Fab' Heavy Chain 1 nat polymer 25001.436 nmAb 2F5 Fab' light Chain 1 nat polymer 18.015 water 266 nat water no no ALQLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRP EDFATYYCQQLHFYPHTFGGGTRVDVRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYECEVTHQGLSSPVTKSFNRGEC ALQLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRP EDFATYYCQQLHFYPHTFGGGTRVDVRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYECEVTHQGLSSPVTKSFNRGEC L polypeptide(L) no no RITLKESGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQV VLVMTRVSPVDTATYFCAHRRGPTTLFGVPIARGPVNAMDVWGQGITVTISSTSTKGPSVFPLAPSSKSTSGGTAALGCL VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYTCNVNHKPSNTKVDKRVEPKSC RITLKESGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQV VLVMTRVSPVDTATYFCAHRRGPTTLFGVPIARGPVNAMDVWGQGITVTISSTSTKGPSVFPLAPSSKSTSGGTAALGCL VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYTCNVNHKPSNTKVDKRVEPKSC H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens human Homo sample 9606 Homo sapiens 1 2.38 48.27 VAPOR DIFFUSION, HANGING DROP 6.5 0.5M Li2SO4, 15% PEG 8000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 repository Initial release Version format compliance Version format compliance 1 0 2007-05-15 1 1 2008-05-01 1 2 2011-07-13 RCSB Y RCSB 2007-05-03 REL REL HOH water HOH 1 3 HOH HOH 215 L HOH 2 3 HOH HOH 216 L HOH 3 3 HOH HOH 217 L HOH 4 3 HOH HOH 218 L HOH 5 3 HOH HOH 219 L HOH 6 3 HOH HOH 220 L HOH 7 3 HOH HOH 221 L HOH 8 3 HOH HOH 222 L HOH 10 3 HOH HOH 223 L HOH 11 3 HOH HOH 224 L HOH 12 3 HOH HOH 225 L HOH 13 3 HOH HOH 226 L HOH 15 3 HOH HOH 227 L HOH 17 3 HOH HOH 228 L HOH 18 3 HOH HOH 229 L HOH 20 3 HOH HOH 230 L HOH 23 3 HOH HOH 231 L HOH 24 3 HOH HOH 232 L HOH 26 3 HOH HOH 233 L HOH 27 3 HOH HOH 234 L HOH 28 3 HOH HOH 235 L HOH 29 3 HOH HOH 236 L HOH 30 3 HOH HOH 237 L HOH 33 3 HOH HOH 238 L HOH 38 3 HOH HOH 239 L HOH 39 3 HOH HOH 240 L HOH 41 3 HOH HOH 241 L HOH 42 3 HOH HOH 242 L HOH 43 3 HOH HOH 243 L HOH 45 3 HOH HOH 244 L HOH 47 3 HOH HOH 245 L HOH 51 3 HOH HOH 246 L HOH 52 3 HOH HOH 247 L HOH 53 3 HOH HOH 248 L HOH 54 3 HOH HOH 249 L HOH 58 3 HOH HOH 250 L HOH 59 3 HOH HOH 251 L HOH 60 3 HOH HOH 252 L HOH 61 3 HOH HOH 253 L HOH 62 3 HOH HOH 254 L HOH 64 3 HOH HOH 255 L HOH 66 3 HOH HOH 256 L HOH 67 3 HOH HOH 257 L HOH 68 3 HOH HOH 258 L HOH 71 3 HOH HOH 259 L HOH 75 3 HOH HOH 260 L HOH 76 3 HOH HOH 261 L HOH 78 3 HOH HOH 262 L HOH 79 3 HOH HOH 263 L HOH 80 3 HOH HOH 264 L HOH 83 3 HOH HOH 265 L HOH 89 3 HOH HOH 266 L HOH 90 3 HOH HOH 267 L HOH 91 3 HOH HOH 268 L HOH 93 3 HOH HOH 269 L HOH 95 3 HOH HOH 270 L HOH 99 3 HOH HOH 271 L HOH 101 3 HOH HOH 272 L HOH 102 3 HOH HOH 273 L HOH 104 3 HOH HOH 274 L HOH 108 3 HOH HOH 275 L HOH 110 3 HOH HOH 276 L HOH 111 3 HOH HOH 277 L HOH 112 3 HOH HOH 278 L HOH 113 3 HOH HOH 279 L HOH 118 3 HOH HOH 280 L HOH 119 3 HOH HOH 281 L HOH 120 3 HOH HOH 282 L HOH 121 3 HOH HOH 283 L HOH 122 3 HOH HOH 284 L HOH 123 3 HOH HOH 285 L HOH 124 3 HOH HOH 286 L HOH 126 3 HOH HOH 287 L HOH 128 3 HOH HOH 288 L HOH 129 3 HOH HOH 289 L HOH 131 3 HOH HOH 290 L HOH 132 3 HOH HOH 291 L HOH 134 3 HOH HOH 292 L HOH 137 3 HOH HOH 293 L HOH 138 3 HOH HOH 294 L HOH 139 3 HOH HOH 295 L HOH 142 3 HOH HOH 296 L HOH 143 3 HOH HOH 297 L HOH 144 3 HOH HOH 298 L HOH 147 3 HOH HOH 299 L HOH 148 3 HOH HOH 300 L HOH 149 3 HOH HOH 301 L HOH 151 3 HOH HOH 302 L HOH 152 3 HOH HOH 303 L HOH 153 3 HOH HOH 304 L HOH 154 3 HOH HOH 305 L HOH 155 3 HOH HOH 306 L HOH 156 3 HOH HOH 307 L HOH 157 3 HOH HOH 308 L HOH 158 3 HOH HOH 309 L HOH 162 3 HOH HOH 310 L HOH 163 3 HOH HOH 311 L HOH 166 3 HOH HOH 312 L HOH 171 3 HOH HOH 313 L HOH 172 3 HOH HOH 314 L HOH 174 3 HOH HOH 315 L HOH 175 3 HOH HOH 316 L HOH 177 3 HOH HOH 317 L HOH 180 3 HOH HOH 318 L HOH 181 3 HOH HOH 319 L HOH 182 3 HOH HOH 320 L HOH 183 3 HOH HOH 321 L HOH 185 3 HOH HOH 322 L HOH 186 3 HOH HOH 323 L HOH 187 3 HOH HOH 324 L HOH 189 3 HOH HOH 325 L HOH 193 3 HOH HOH 326 L HOH 194 3 HOH HOH 327 L HOH 196 3 HOH HOH 328 L HOH 199 3 HOH HOH 329 L HOH 201 3 HOH HOH 330 L HOH 202 3 HOH HOH 331 L HOH 204 3 HOH HOH 332 L HOH 205 3 HOH HOH 333 L HOH 208 3 HOH HOH 334 L HOH 209 3 HOH HOH 335 L HOH 211 3 HOH HOH 336 L HOH 213 3 HOH HOH 337 L HOH 214 3 HOH HOH 338 L HOH 215 3 HOH HOH 339 L HOH 217 3 HOH HOH 340 L HOH 220 3 HOH HOH 341 L HOH 221 3 HOH HOH 342 L HOH 222 3 HOH HOH 343 L HOH 223 3 HOH HOH 344 L HOH 224 3 HOH HOH 345 L HOH 231 3 HOH HOH 346 L HOH 232 3 HOH HOH 347 L HOH 233 3 HOH HOH 348 L HOH 237 3 HOH HOH 349 L HOH 238 3 HOH HOH 350 L HOH 239 3 HOH HOH 351 L HOH 240 3 HOH HOH 352 L HOH 242 3 HOH HOH 353 L HOH 243 3 HOH HOH 354 L HOH 245 3 HOH HOH 355 L HOH 246 3 HOH HOH 356 L HOH 247 3 HOH HOH 357 L HOH 248 3 HOH HOH 358 L HOH 251 3 HOH HOH 359 L HOH 253 3 HOH HOH 360 L HOH 254 3 HOH HOH 361 L HOH 255 3 HOH HOH 362 L HOH 256 3 HOH HOH 363 L HOH 257 3 HOH HOH 364 L HOH 259 3 HOH HOH 365 L HOH 260 3 HOH HOH 366 L HOH 261 3 HOH HOH 367 L HOH 262 3 HOH HOH 368 L HOH 266 3 HOH HOH 369 L HOH 267 3 HOH HOH 370 L HOH 14 3 HOH HOH 236 H HOH 16 3 HOH HOH 237 H HOH 21 3 HOH HOH 238 H HOH 22 3 HOH HOH 239 H HOH 25 3 HOH HOH 240 H HOH 31 3 HOH HOH 241 H HOH 32 3 HOH HOH 242 H HOH 34 3 HOH HOH 243 H HOH 35 3 HOH HOH 244 H HOH 36 3 HOH HOH 245 H HOH 37 3 HOH HOH 246 H HOH 40 3 HOH HOH 247 H HOH 44 3 HOH HOH 248 H HOH 46 3 HOH HOH 249 H HOH 48 3 HOH HOH 250 H HOH 49 3 HOH HOH 251 H HOH 50 3 HOH HOH 252 H HOH 55 3 HOH HOH 253 H HOH 56 3 HOH HOH 254 H HOH 57 3 HOH HOH 255 H HOH 63 3 HOH HOH 256 H HOH 65 3 HOH HOH 257 H HOH 69 3 HOH HOH 258 H HOH 70 3 HOH HOH 259 H HOH 72 3 HOH HOH 260 H HOH 73 3 HOH HOH 261 H HOH 74 3 HOH HOH 262 H HOH 77 3 HOH HOH 263 H HOH 81 3 HOH HOH 264 H HOH 82 3 HOH HOH 265 H HOH 84 3 HOH HOH 266 H HOH 85 3 HOH HOH 267 H HOH 86 3 HOH HOH 268 H HOH 87 3 HOH HOH 269 H HOH 88 3 HOH HOH 270 H HOH 92 3 HOH HOH 271 H HOH 94 3 HOH HOH 272 H HOH 96 3 HOH HOH 273 H HOH 97 3 HOH HOH 274 H HOH 98 3 HOH HOH 275 H HOH 100 3 HOH HOH 276 H HOH 103 3 HOH HOH 277 H HOH 105 3 HOH HOH 278 H HOH 106 3 HOH HOH 279 H HOH 107 3 HOH HOH 280 H HOH 109 3 HOH HOH 281 H HOH 114 3 HOH HOH 282 H HOH 115 3 HOH HOH 283 H HOH 116 3 HOH HOH 284 H HOH 117 3 HOH HOH 285 H HOH 125 3 HOH HOH 286 H HOH 127 3 HOH HOH 287 H HOH 130 3 HOH HOH 288 H HOH 133 3 HOH HOH 289 H HOH 135 3 HOH HOH 290 H HOH 136 3 HOH HOH 291 H HOH 140 3 HOH HOH 292 H HOH 141 3 HOH HOH 293 H HOH 145 3 HOH HOH 294 H HOH 146 3 HOH HOH 295 H HOH 150 3 HOH HOH 296 H HOH 159 3 HOH HOH 297 H HOH 160 3 HOH HOH 298 H HOH 161 3 HOH HOH 299 H HOH 164 3 HOH HOH 300 H HOH 165 3 HOH HOH 301 H HOH 167 3 HOH HOH 302 H HOH 168 3 HOH HOH 303 H HOH 169 3 HOH HOH 304 H HOH 170 3 HOH HOH 305 H HOH 173 3 HOH HOH 306 H HOH 176 3 HOH HOH 307 H HOH 178 3 HOH HOH 308 H HOH 179 3 HOH HOH 309 H HOH 184 3 HOH HOH 310 H HOH 188 3 HOH HOH 311 H HOH 190 3 HOH HOH 312 H HOH 191 3 HOH HOH 313 H HOH 192 3 HOH HOH 314 H HOH 195 3 HOH HOH 315 H HOH 197 3 HOH HOH 316 H HOH 198 3 HOH HOH 317 H HOH 200 3 HOH HOH 318 H HOH 203 3 HOH HOH 319 H HOH 206 3 HOH HOH 320 H HOH 207 3 HOH HOH 321 H HOH 210 3 HOH HOH 322 H HOH 212 3 HOH HOH 323 H HOH 216 3 HOH HOH 324 H HOH 218 3 HOH HOH 325 H HOH 219 3 HOH HOH 326 H HOH 225 3 HOH HOH 327 H HOH 226 3 HOH HOH 328 H HOH 227 3 HOH HOH 329 H HOH 228 3 HOH HOH 330 H HOH 229 3 HOH HOH 331 H HOH 230 3 HOH HOH 332 H HOH 234 3 HOH HOH 333 H HOH 235 3 HOH HOH 334 H HOH 236 3 HOH HOH 335 H HOH 241 3 HOH HOH 336 H HOH 244 3 HOH HOH 337 H HOH 249 3 HOH HOH 338 H HOH 250 3 HOH HOH 339 H HOH 252 3 HOH HOH 340 H HOH 258 3 HOH HOH 341 H HOH 263 3 HOH HOH 342 H HOH 264 3 HOH HOH 343 H HOH 265 3 HOH HOH 344 H HOH 268 3 HOH HOH 345 H ALA 1 n 1 ALA 1 L LEU 2 n 2 LEU 2 L GLN 3 n 3 GLN 3 L LEU 4 n 4 LEU 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L SER 7 n 7 SER 7 L PRO 8 n 8 PRO 8 L SER 9 n 9 SER 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L SER 12 n 12 SER 12 L ALA 13 n 13 ALA 13 L SER 14 n 14 SER 14 L VAL 15 n 15 VAL 15 L GLY 16 n 16 GLY 16 L ASP 17 n 17 ASP 17 L ARG 18 n 18 ARG 18 L ILE 19 n 19 ILE 19 L THR 20 n 20 THR 20 L ILE 21 n 21 ILE 21 L THR 22 n 22 THR 22 L CYS 23 n 23 CYS 23 L ARG 24 n 24 ARG 24 L ALA 25 n 25 ALA 25 L SER 26 n 26 SER 26 L GLN 27 n 27 GLN 27 L GLY 28 n 28 GLY 28 L VAL 29 n 29 VAL 29 L THR 30 n 30 THR 30 L SER 31 n 31 SER 31 L ALA 32 n 32 ALA 32 L LEU 33 n 33 LEU 33 L ALA 34 n 34 ALA 34 L TRP 35 n 35 TRP 35 L TYR 36 n 36 TYR 36 L ARG 37 n 37 ARG 37 L GLN 38 n 38 GLN 38 L LYS 39 n 39 LYS 39 L PRO 40 n 40 PRO 40 L GLY 41 n 41 GLY 41 L SER 42 n 42 SER 42 L PRO 43 n 43 PRO 43 L PRO 44 n 44 PRO 44 L GLN 45 n 45 GLN 45 L LEU 46 n 46 LEU 46 L LEU 47 n 47 LEU 47 L ILE 48 n 48 ILE 48 L TYR 49 n 49 TYR 49 L ASP 50 n 50 ASP 50 L ALA 51 n 51 ALA 51 L SER 52 n 52 SER 52 L SER 53 n 53 SER 53 L LEU 54 n 54 LEU 54 L GLU 55 n 55 GLU 55 L SER 56 n 56 SER 56 L GLY 57 n 57 GLY 57 L VAL 58 n 58 VAL 58 L PRO 59 n 59 PRO 59 L SER 60 n 60 SER 60 L ARG 61 n 61 ARG 61 L PHE 62 n 62 PHE 62 L SER 63 n 63 SER 63 L GLY 64 n 64 GLY 64 L SER 65 n 65 SER 65 L GLY 66 n 66 GLY 66 L SER 67 n 67 SER 67 L GLY 68 n 68 GLY 68 L THR 69 n 69 THR 69 L GLU 70 n 70 GLU 70 L PHE 71 n 71 PHE 71 L THR 72 n 72 THR 72 L LEU 73 n 73 LEU 73 L THR 74 n 74 THR 74 L ILE 75 n 75 ILE 75 L SER 76 n 76 SER 76 L THR 77 n 77 THR 77 L LEU 78 n 78 LEU 78 L ARG 79 n 79 ARG 79 L PRO 80 n 80 PRO 80 L GLU 81 n 81 GLU 81 L ASP 82 n 82 ASP 82 L PHE 83 n 83 PHE 83 L ALA 84 n 84 ALA 84 L THR 85 n 85 THR 85 L TYR 86 n 86 TYR 86 L TYR 87 n 87 TYR 87 L CYS 88 n 88 CYS 88 L GLN 89 n 89 GLN 89 L GLN 90 n 90 GLN 90 L LEU 91 n 91 LEU 91 L HIS 92 n 92 HIS 92 L PHE 93 n 93 PHE 93 L TYR 94 n 94 TYR 94 L PRO 95 n 95 PRO 95 L HIS 96 n 96 HIS 96 L THR 97 n 97 THR 97 L PHE 98 n 98 PHE 98 L GLY 99 n 99 GLY 99 L GLY 100 n 100 GLY 100 L GLY 101 n 101 GLY 101 L THR 102 n 102 THR 102 L ARG 103 n 103 ARG 103 L VAL 104 n 104 VAL 104 L ASP 105 n 105 ASP 105 L VAL 106 n 106 VAL 106 L ARG 107 n 107 ARG 107 L ARG 108 n 108 ARG 108 L THR 109 n 109 THR 109 L VAL 110 n 110 VAL 110 L ALA 111 n 111 ALA 111 L ALA 112 n 112 ALA 112 L PRO 113 n 113 PRO 113 L SER 114 n 114 SER 114 L VAL 115 n 115 VAL 115 L PHE 116 n 116 PHE 116 L ILE 117 n 117 ILE 117 L PHE 118 n 118 PHE 118 L PRO 119 n 119 PRO 119 L PRO 120 n 120 PRO 120 L SER 121 n 121 SER 121 L ASP 122 n 122 ASP 122 L GLU 123 n 123 GLU 123 L GLN 124 n 124 GLN 124 L LEU 125 n 125 LEU 125 L LYS 126 n 126 LYS 126 L SER 127 n 127 SER 127 L GLY 128 n 128 GLY 128 L THR 129 n 129 THR 129 L ALA 130 n 130 ALA 130 L SER 131 n 131 SER 131 L VAL 132 n 132 VAL 132 L VAL 133 n 133 VAL 133 L CYS 134 n 134 CYS 134 L LEU 135 n 135 LEU 135 L LEU 136 n 136 LEU 136 L ASN 137 n 137 ASN 137 L ASN 138 n 138 ASN 138 L PHE 139 n 139 PHE 139 L TYR 140 n 140 TYR 140 L PRO 141 n 141 PRO 141 L ARG 142 n 142 ARG 142 L GLU 143 n 143 GLU 143 L ALA 144 n 144 ALA 144 L LYS 145 n 145 LYS 145 L VAL 146 n 146 VAL 146 L GLN 147 n 147 GLN 147 L TRP 148 n 148 TRP 148 L LYS 149 n 149 LYS 149 L VAL 150 n 150 VAL 150 L ASP 151 n 151 ASP 151 L ASN 152 n 152 ASN 152 L ALA 153 n 153 ALA 153 L LEU 154 n 154 LEU 154 L GLN 155 n 155 GLN 155 L SER 156 n 156 SER 156 L GLY 157 n 157 GLY 157 L ASN 158 n 158 ASN 158 L SER 159 n 159 SER 159 L GLN 160 n 160 GLN 160 L GLU 161 n 161 GLU 161 L SER 162 n 162 SER 162 L VAL 163 n 163 VAL 163 L THR 164 n 164 THR 164 L GLU 165 n 165 GLU 165 L GLN 166 n 166 GLN 166 L ASP 167 n 167 ASP 167 L SER 168 n 168 SER 168 L LYS 169 n 169 LYS 169 L ASP 170 n 170 ASP 170 L SER 171 n 171 SER 171 L THR 172 n 172 THR 172 L TYR 173 n 173 TYR 173 L SER 174 n 174 SER 174 L LEU 175 n 175 LEU 175 L SER 176 n 176 SER 176 L SER 177 n 177 SER 177 L THR 178 n 178 THR 178 L LEU 179 n 179 LEU 179 L THR 180 n 180 THR 180 L LEU 181 n 181 LEU 181 L SER 182 n 182 SER 182 L LYS 183 n 183 LYS 183 L ALA 184 n 184 ALA 184 L ASP 185 n 185 ASP 185 L TYR 186 n 186 TYR 186 L GLU 187 n 187 GLU 187 L LYS 188 n 188 LYS 188 L HIS 189 n 189 HIS 189 L LYS 190 n 190 LYS 190 L VAL 191 n 191 VAL 191 L TYR 192 n 192 TYR 192 L GLU 193 n 193 GLU 193 L CYS 194 n 194 CYS 194 L GLU 195 n 195 GLU 195 L VAL 196 n 196 VAL 196 L THR 197 n 197 THR 197 L HIS 198 n 198 HIS 198 L GLN 199 n 199 GLN 199 L GLY 200 n 200 GLY 200 L LEU 201 n 201 LEU 201 L SER 202 n 202 SER 202 L SER 203 n 203 SER 203 L PRO 204 n 204 PRO 204 L VAL 205 n 205 VAL 205 L THR 206 n 206 THR 206 L LYS 207 n 207 LYS 207 L SER 208 n 208 SER 208 L PHE 209 n 209 PHE 209 L ASN 210 n 210 ASN 210 L ARG 211 n 211 ARG 211 L GLY 212 n 212 GLY 212 L GLU 213 n 213 GLU 213 L n 214 214 L ARG 1 n 1 ARG 1 H ILE 2 n 2 ILE 2 H THR 3 n 3 THR 3 H LEU 4 n 4 LEU 4 H LYS 5 n 5 LYS 5 H GLU 6 n 6 GLU 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H PRO 9 n 9 PRO 9 H PRO 10 n 10 PRO 10 H LEU 11 n 11 LEU 11 H VAL 12 n 12 VAL 12 H LYS 13 n 13 LYS 13 H PRO 14 n 14 PRO 14 H THR 15 n 15 THR 15 H GLN 16 n 16 GLN 16 H THR 17 n 17 THR 17 H LEU 18 n 18 LEU 18 H THR 19 n 19 THR 19 H LEU 20 n 20 LEU 20 H THR 21 n 21 THR 21 H CYS 22 n 22 CYS 22 H SER 23 n 23 SER 23 H PHE 24 n 24 PHE 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H PHE 27 n 27 PHE 27 H SER 28 n 28 SER 28 H LEU 29 n 29 LEU 29 H SER 30 n 30 SER 30 H ASP 31 n 31 ASP 31 H PHE 32 n 32 PHE 32 H GLY 33 n 33 GLY 33 H VAL 34 n 34 VAL 34 H GLY 35 n 35 GLY 35 H VAL 36 n 36 VAL 36 H GLY 37 n 37 GLY 37 H TRP 38 n 38 TRP 38 H ILE 39 n 39 ILE 39 H ARG 40 n 40 ARG 40 H GLN 41 n 41 GLN 41 H PRO 42 n 42 PRO 42 H PRO 43 n 43 PRO 43 H GLY 44 n 44 GLY 44 H LYS 45 n 45 LYS 45 H ALA 46 n 46 ALA 46 H LEU 47 n 47 LEU 47 H GLU 48 n 48 GLU 48 H TRP 49 n 49 TRP 49 H LEU 50 n 50 LEU 50 H ALA 51 n 51 ALA 51 H ILE 52 n 52 ILE 52 H ILE 53 n 53 ILE 53 H TYR 54 n 54 TYR 54 H SER 55 n 55 SER 55 H ASP 56 n 56 ASP 56 H ASP 57 n 57 ASP 57 H ASP 58 n 58 ASP 58 H LYS 59 n 59 LYS 59 H ARG 60 n 60 ARG 60 H TYR 61 n 61 TYR 61 H SER 62 n 62 SER 62 H PRO 63 n 63 PRO 63 H SER 64 n 64 SER 64 H LEU 65 n 65 LEU 65 H ASN 66 n 66 ASN 66 H THR 67 n 67 THR 67 H ARG 68 n 68 ARG 68 H LEU 69 n 69 LEU 69 H THR 70 n 70 THR 70 H ILE 71 n 71 ILE 71 H THR 72 n 72 THR 72 H LYS 73 n 73 LYS 73 H ASP 74 n 74 ASP 74 H THR 75 n 75 THR 75 H SER 76 n 76 SER 76 H LYS 77 n 77 LYS 77 H ASN 78 n 78 ASN 78 H GLN 79 n 79 GLN 79 H VAL 80 n 80 VAL 80 H VAL 81 n 81 VAL 81 H LEU 82 n 82 LEU 82 H VAL 83 n 83 VAL 83 H MET 84 n 84 MET 84 H THR 85 n 85 THR 85 H ARG 86 n 86 ARG 86 H VAL 87 n 87 VAL 87 H SER 88 n 88 SER 88 H PRO 89 n 89 PRO 89 H VAL 90 n 90 VAL 90 H ASP 91 n 91 ASP 91 H THR 92 n 92 THR 92 H ALA 93 n 93 ALA 93 H THR 94 n 94 THR 94 H TYR 95 n 95 TYR 95 H PHE 96 n 96 PHE 96 H CYS 97 n 97 CYS 97 H ALA 98 n 98 ALA 98 H HIS 99 n 99 HIS 99 H ARG 100 n 100 ARG 100 H ARG 101 n 101 ARG 101 H GLY 102 n 102 GLY 102 H PRO 103 n 103 PRO 103 H n 104 104 H n 105 105 H n 106 106 H n 107 107 H n 108 108 H n 109 109 H n 110 110 H n 111 111 H n 112 112 H n 113 113 H GLY 114 n 114 GLY 114 H PRO 115 n 115 PRO 115 H VAL 116 n 116 VAL 116 H ASN 117 n 117 ASN 117 H ALA 118 n 118 ALA 118 H MET 119 n 119 MET 119 H ASP 120 n 120 ASP 120 H VAL 121 n 121 VAL 121 H TRP 122 n 122 TRP 122 H GLY 123 n 123 GLY 123 H GLN 124 n 124 GLN 124 H GLY 125 n 125 GLY 125 H ILE 126 n 126 ILE 126 H THR 127 n 127 THR 127 H VAL 128 n 128 VAL 128 H THR 129 n 129 THR 129 H ILE 130 n 130 ILE 130 H SER 131 n 131 SER 131 H SER 132 n 132 SER 132 H THR 133 n 133 THR 133 H SER 134 n 134 SER 134 H THR 135 n 135 THR 135 H LYS 136 n 136 LYS 136 H GLY 137 n 137 GLY 137 H PRO 138 n 138 PRO 138 H SER 139 n 139 SER 139 H VAL 140 n 140 VAL 140 H PHE 141 n 141 PHE 141 H PRO 142 n 142 PRO 142 H LEU 143 n 143 LEU 143 H ALA 144 n 144 ALA 144 H PRO 145 n 145 PRO 145 H SER 146 n 146 SER 146 H n 147 147 H n 148 148 H n 149 149 H n 150 150 H SER 151 n 151 SER 151 H GLY 152 n 152 GLY 152 H GLY 153 n 153 GLY 153 H THR 154 n 154 THR 154 H ALA 155 n 155 ALA 155 H ALA 156 n 156 ALA 156 H LEU 157 n 157 LEU 157 H GLY 158 n 158 GLY 158 H CYS 159 n 159 CYS 159 H LEU 160 n 160 LEU 160 H VAL 161 n 161 VAL 161 H LYS 162 n 162 LYS 162 H ASP 163 n 163 ASP 163 H TYR 164 n 164 TYR 164 H PHE 165 n 165 PHE 165 H PRO 166 n 166 PRO 166 H GLU 167 n 167 GLU 167 H PRO 168 n 168 PRO 168 H VAL 169 n 169 VAL 169 H THR 170 n 170 THR 170 H VAL 171 n 171 VAL 171 H SER 172 n 172 SER 172 H TRP 173 n 173 TRP 173 H ASN 174 n 174 ASN 174 H SER 175 n 175 SER 175 H GLY 176 n 176 GLY 176 H ALA 177 n 177 ALA 177 H LEU 178 n 178 LEU 178 H THR 179 n 179 THR 179 H SER 180 n 180 SER 180 H GLY 181 n 181 GLY 181 H VAL 182 n 182 VAL 182 H HIS 183 n 183 HIS 183 H THR 184 n 184 THR 184 H PHE 185 n 185 PHE 185 H PRO 186 n 186 PRO 186 H ALA 187 n 187 ALA 187 H VAL 188 n 188 VAL 188 H LEU 189 n 189 LEU 189 H GLN 190 n 190 GLN 190 H SER 191 n 191 SER 191 H SER 192 n 192 SER 192 H GLY 193 n 193 GLY 193 H LEU 194 n 194 LEU 194 H TYR 195 n 195 TYR 195 H SER 196 n 196 SER 196 H LEU 197 n 197 LEU 197 H SER 198 n 198 SER 198 H SER 199 n 199 SER 199 H VAL 200 n 200 VAL 200 H VAL 201 n 201 VAL 201 H THR 202 n 202 THR 202 H VAL 203 n 203 VAL 203 H PRO 204 n 204 PRO 204 H SER 205 n 205 SER 205 H SER 206 n 206 SER 206 H SER 207 n 207 SER 207 H LEU 208 n 208 LEU 208 H GLY 209 n 209 GLY 209 H THR 210 n 210 THR 210 H GLN 211 n 211 GLN 211 H THR 212 n 212 THR 212 H TYR 213 n 213 TYR 213 H THR 214 n 214 THR 214 H CYS 215 n 215 CYS 215 H ASN 216 n 216 ASN 216 H VAL 217 n 217 VAL 217 H ASN 218 n 218 ASN 218 H HIS 219 n 219 HIS 219 H LYS 220 n 220 LYS 220 H PRO 221 n 221 PRO 221 H SER 222 n 222 SER 222 H ASN 223 n 223 ASN 223 H THR 224 n 224 THR 224 H LYS 225 n 225 LYS 225 H VAL 226 n 226 VAL 226 H ASP 227 n 227 ASP 227 H LYS 228 n 228 LYS 228 H ARG 229 n 229 ARG 229 H VAL 230 n 230 VAL 230 H GLU 231 n 231 GLU 231 H PRO 232 n 232 PRO 232 H n 233 233 H n 234 234 H n 235 235 H author_and_software_defined_assembly PISA 2 dimeric 3410 -22 19270 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L N THR 5 A N THR 5 L O ARG 24 A O ARG 24 L N ILE 21 A N ILE 21 L O LEU 73 A O LEU 73 L O THR 74 A O THR 74 L N SER 63 A N SER 63 L N LEU 11 A N LEU 11 L O ARG 103 A O ARG 103 L O THR 102 A O THR 102 L N TYR 86 A N TYR 86 L O TYR 87 A O TYR 87 L N TYR 36 A N TYR 36 L N TRP 35 A N TRP 35 L O LEU 47 A O LEU 47 L N TYR 49 A N TYR 49 L O SER 53 A O SER 53 L N PHE 116 A N PHE 116 L O LEU 135 A O LEU 135 L N ALA 130 A N ALA 130 L O LEU 181 A O LEU 181 L O THR 178 A O THR 178 L N GLN 160 A N GLN 160 L O ALA 153 A O ALA 153 L N VAL 150 A N VAL 150 L N LYS 149 A N LYS 149 L O GLU 193 A O GLU 193 L N VAL 196 A N VAL 196 L O VAL 205 A O VAL 205 H N SER 7 B N SER 7 H O THR 21 B O THR 21 H N LEU 18 B N LEU 18 H O MET 84 B O MET 84 H O VAL 83 B O VAL 83 H N THR 70 B N THR 70 H N VAL 12 B N VAL 12 H O THR 129 B O THR 129 H O ILE 126 B O ILE 126 H N TYR 95 B N TYR 95 H O PHE 96 B O PHE 96 H N ILE 39 B N ILE 39 H N TRP 38 B N TRP 38 H O ALA 51 B O ALA 51 H N ILE 52 B N ILE 52 H O ARG 60 B O ARG 60 H N VAL 12 B N VAL 12 H O THR 129 B O THR 129 H O ILE 126 B O ILE 126 H N TYR 95 B N TYR 95 H N HIS 99 B N HIS 99 H O VAL 121 B O VAL 121 H N PHE 141 B N PHE 141 H O LEU 160 B O LEU 160 H N ALA 155 B N ALA 155 H O VAL 203 B O VAL 203 H O VAL 200 B O VAL 200 H N HIS 183 B N HIS 183 H N PHE 141 B N PHE 141 H O LEU 160 B O LEU 160 H N ALA 155 B N ALA 155 H O VAL 203 B O VAL 203 H O SER 196 B O SER 196 H N VAL 188 B N VAL 188 H N SER 172 B N SER 172 H O ASN 216 B O ASN 216 H N TYR 213 B N TYR 213 H O VAL 230 B O VAL 230 1 L CYS 214 A CYS 214 1 Y 1 H THR 104 B THR 104 1 Y 1 H THR 105 B THR 105 1 Y 1 H LEU 106 B LEU 106 1 Y 1 H PHE 107 B PHE 107 1 Y 1 H GLY 108 B GLY 108 1 Y 1 H VAL 109 B VAL 109 1 Y 1 H PRO 110 B PRO 110 1 Y 1 H ILE 111 B ILE 111 1 Y 1 H ALA 112 B ALA 112 1 Y 1 H ARG 113 B ARG 113 1 Y 1 H SER 147 B SER 147 1 Y 1 H LYS 148 B LYS 148 1 Y 1 H SER 149 B SER 149 1 Y 1 H THR 150 B THR 150 1 Y 1 H LYS 233 B LYS 233 1 Y 1 H SER 234 B SER 234 1 Y 1 H CYS 235 B CYS 235 1 Y 1 10.02 1.50 119.30 129.32 H H H C N CA LYS PRO PRO 13 14 14 Y 1 H H CB OG SER SER 146 146 0.400 0.013 1.418 1.818 N 1 L THR 30 53.53 -124.63 1 L ALA 51 67.67 -41.30 1 L THR 77 70.80 98.80 1 L ALA 84 -166.25 -165.11 1 L ASN 138 44.63 70.01 1 L ASN 152 68.49 -0.03 1 H PRO 14 -43.66 -0.79 1 H GLN 16 -63.08 -177.06 1 H ASP 31 -56.06 -167.56 1 H LYS 45 173.74 -179.05 1 H ALA 118 168.60 168.48 1 H THR 154 56.04 100.56 1 H PHE 165 -171.77 136.76 0.27 0.24 2.05 20.00 1282 26304 89.4 1 0.0 MOLECULAR REPLACEMENT 0.35 0.29 5.0 0.24 0.19 2.05 20.00 266 3535 0 0 3269 1.9 0.0090 27.0 4.8 0.302 0.256 2.18 202 94.2 11.7 2.05 20.0 2PR4 26917 1 15.0 3.2 92.0 2.05 2.10 3.8 0.313 3.0 93.0 data reduction DENZO phasing AMoRE refinement CNS 0.4 data scaling SCALEPACK nmAb 2F5 Fab' Crystal Structure of Fab' from the HIV-1 Neutralizing Antibody 2F5 1 N N 2 N N 3 N N 3 N N Light chain interacts with the Heavy chain to form Fab' fragment. L ARG 79 A ARG 79 HELX_P L PHE 83 A PHE 83 5 1 5 L SER 121 A SER 121 HELX_P L LYS 126 A LYS 126 1 2 6 L LYS 183 A LYS 183 HELX_P L HIS 189 A HIS 189 1 3 7 H PRO 63 B PRO 63 HELX_P H ASN 66 B ASN 66 5 4 4 H SER 88 B SER 88 HELX_P H THR 92 B THR 92 5 5 5 H SER 175 B SER 175 HELX_P H ALA 177 B ALA 177 5 6 3 H PRO 204 B PRO 204 HELX_P H LEU 208 B LEU 208 5 7 5 H LYS 220 B LYS 220 HELX_P H ASN 223 B ASN 223 5 8 4 disulf 2.036 L CYS 23 A SG CYS 23 1_555 L CYS 88 A SG CYS 88 1_555 disulf 2.023 L CYS 134 A SG CYS 134 1_555 L CYS 194 A SG CYS 194 1_555 disulf 2.034 H CYS 22 B SG CYS 22 1_555 H CYS 97 B SG CYS 97 1_555 disulf 2.029 H CYS 159 B SG CYS 159 1_555 H CYS 215 B SG CYS 215 1_555 VIRAL PROTEIN nmAb 2F5, gp41, HIV, VIRAL PROTEIN L SER 7 A SER 7 1 L PRO 8 A PRO 8 -0.67 L TYR 94 A TYR 94 1 L PRO 95 A PRO 95 0.24 L TYR 140 A TYR 140 1 L PRO 141 A PRO 141 0.04 H PHE 165 B PHE 165 1 H PRO 166 B PRO 166 -0.23 H GLU 167 B GLU 167 1 H PRO 168 B PRO 168 0.04 2PR4 PDB 1 2PR4 2PR4 PDB 2 2PR4 1 214 2PR4 1 214 2PR4 L 1 1 214 1 235 2PR4 1 235 2PR4 H 2 1 235 4 6 4 4 4 6 4 4 4 3 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L LEU 4 A LEU 4 L SER 7 A SER 7 L ILE 19 A ILE 19 L ALA 25 A ALA 25 L GLU 70 A GLU 70 L ILE 75 A ILE 75 L PHE 62 A PHE 62 L SER 67 A SER 67 L SER 10 A SER 10 L ALA 13 A ALA 13 L THR 102 A THR 102 L VAL 106 A VAL 106 L THR 85 A THR 85 L GLN 90 A GLN 90 L LEU 33 A LEU 33 L GLN 38 A GLN 38 L GLN 45 A GLN 45 L TYR 49 A TYR 49 L SER 53 A SER 53 L LEU 54 A LEU 54 L SER 114 A SER 114 L PHE 118 A PHE 118 L THR 129 A THR 129 L PHE 139 A PHE 139 L TYR 173 A TYR 173 L SER 182 A SER 182 L SER 159 A SER 159 L VAL 163 A VAL 163 L ALA 153 A ALA 153 L LEU 154 A LEU 154 L LYS 145 A LYS 145 L VAL 150 A VAL 150 L VAL 191 A VAL 191 L THR 197 A THR 197 L VAL 205 A VAL 205 L ASN 210 A ASN 210 H THR 3 B THR 3 H SER 7 B SER 7 H LEU 18 B LEU 18 H SER 25 B SER 25 H GLN 79 B GLN 79 H MET 84 B MET 84 H LEU 69 B LEU 69 H ASP 74 B ASP 74 H LEU 11 B LEU 11 H VAL 12 B VAL 12 H ILE 126 B ILE 126 H ILE 130 B ILE 130 H ALA 93 B ALA 93 H ARG 100 B ARG 100 H GLY 35 B GLY 35 H GLN 41 B GLN 41 H GLU 48 B GLU 48 H TYR 54 B TYR 54 H LYS 59 B LYS 59 H TYR 61 B TYR 61 H LEU 11 B LEU 11 H VAL 12 B VAL 12 H ILE 126 B ILE 126 H ILE 130 B ILE 130 H ALA 93 B ALA 93 H ARG 100 B ARG 100 H VAL 121 B VAL 121 H TRP 122 B TRP 122 H SER 139 B SER 139 H LEU 143 B LEU 143 H ALA 155 B ALA 155 H TYR 164 B TYR 164 H TYR 195 B TYR 195 H VAL 203 B VAL 203 H VAL 182 B VAL 182 H THR 184 B THR 184 H SER 139 B SER 139 H LEU 143 B LEU 143 H ALA 155 B ALA 155 H TYR 164 B TYR 164 H TYR 195 B TYR 195 H VAL 203 B VAL 203 H VAL 188 B VAL 188 H LEU 189 B LEU 189 H THR 170 B THR 170 H TRP 173 B TRP 173 H TYR 213 B TYR 213 H HIS 219 B HIS 219 H THR 224 B THR 224 H VAL 230 B VAL 230 19 P 21 21 21