0.011105 0.006411 0.000000 0.000000 0.012823 0.000000 0.000000 0.000000 0.008117 0.00000 0.00000 0.00000 Walse, B. Dufe, V.T. Al-Karadaghi, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.000 90.000 120.000 90.050 90.050 123.200 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C17 H21 N4 O9 P 456.344 FLAVIN MONONUCLEOTIDE RIBOFLAVIN MONOPHOSPHATE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H4 N2 O4 156.096 OROTIC ACID non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 N C N 76 N O N 77 N N N 78 N C N 79 N O N 80 N C N 81 N N Y 82 N C Y 83 N C Y 84 N C N 85 N C Y 86 N C N 87 N C Y 88 N C Y 89 N C N 90 N N N 91 N C N 92 N C N 93 S C N 94 N O N 95 S C N 96 N O N 97 R C N 98 N O N 99 N C N 100 N O N 101 N P N 102 N O N 103 N O N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N N N 127 S C N 128 N C N 129 N O N 130 N C N 131 N C N 132 N C N 133 N O N 134 N N N 135 N O N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 S C N 148 N C N 149 N O N 150 N C N 151 N C N 152 N C N 153 N O N 154 N O N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N N N 166 N C N 167 N C N 168 N O N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N N N 176 S C N 177 N C N 178 N O N 179 N C Y 180 N C Y 181 N N Y 182 N C Y 183 N C Y 184 N N N 185 N O N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N O N 197 N H N 198 N H N 199 N N N 200 S C N 201 N C N 202 N O N 203 S C N 204 N C N 205 N C N 206 N C N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N N N 222 S C N 223 N C N 224 N O N 225 N C N 226 N C N 227 N C N 228 N C N 229 N O N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N N N 244 S C N 245 N C N 246 N O N 247 N C N 248 N C N 249 N C N 250 N C N 251 N N N 252 N O N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 N C N 273 N C N 274 N S N 275 N C N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H Y 288 N N Y 289 N C N 290 N O Y 291 N N Y 292 N C N 293 N O Y 294 N C Y 295 N C N 296 N C N 297 N O N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N N N 304 S C N 305 N C N 306 N O N 307 N C Y 308 N C Y 309 N C Y 310 N C Y 311 N C Y 312 N C Y 313 N C N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C N 348 N O N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 R C N 362 N O N 363 N C N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C Y 379 N C Y 380 N C Y 381 N C Y 382 N N Y 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C N 388 N O N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N N N 402 S C N 403 N C N 404 N O N 405 N C Y 406 N C Y 407 N C Y 408 N C Y 409 N C Y 410 N C Y 411 N C N 412 N O N 413 N O N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N N N 426 S C N 427 N C N 428 N O N 429 N C N 430 N C N 431 N C N 432 N O N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N doub N 79 N sing N 80 N sing Y 81 N doub Y 82 N sing Y 83 N sing N 84 N sing N 85 N sing Y 86 N doub N 87 N sing N 88 N sing N 89 N sing N 90 N sing Y 91 N sing N 92 N sing N 93 N sing N 94 N sing Y 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N doub N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N doub N 177 N sing N 178 N sing N 179 N sing N 180 N sing Y 181 N sing Y 182 N doub Y 183 N doub N 184 N sing Y 185 N sing N 186 N sing Y 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing Y 278 N sing Y 279 N sing N 280 N sing N 281 N doub Y 282 N sing Y 283 N sing N 284 N sing N 285 N doub Y 286 N sing Y 287 N doub N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub N 309 N sing Y 310 N doub N 311 N sing Y 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N doub N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing Y 373 N doub Y 374 N sing Y 375 N sing N 376 N sing Y 377 N doub Y 378 N sing Y 379 N sing N 380 N sing Y 381 N sing Y 382 N doub N 383 N sing Y 384 N doub N 385 N sing Y 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N doub N 397 N sing N 398 N sing N 399 N sing N 400 N sing Y 401 N doub Y 402 N sing Y 403 N sing N 404 N sing Y 405 N doub N 406 N sing Y 407 N doub N 408 N sing Y 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N doub N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing US Biochemistry BICHAW 0033 0006-2960 47 8929 8936 10.1021/bi8003318 18672895 The structures of human dihydroorotate dehydrogenase with and without inhibitor reveal conformational flexibility in the inhibitor and substrate binding sites 2008 10.2210/pdb2prm/pdb pdb_00002prm 100 1 1 mirrors IMAGE PLATE 2004-04-27 MAR scanner 345 mm plate Si(III) SINGLE WAVELENGTH M x-ray 1 SINGLE WAVELENGTH M x-ray 1 1.092 1.0 I711 MAX II 1.092 SYNCHROTRON MAX II BEAMLINE I711 39856.535 Dihydroorotate dehydrogenase, mitochondrial 1.3.99.11 N-terminus truncated 1 man polymer 456.344 FLAVIN MONONUCLEOTIDE 1 syn non-polymer 156.096 OROTIC ACID 1 syn non-polymer 18.015 water 31 nat water Dihydroorotate oxidase; DHOdehase E.C.1.3.3.1 no no MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAAGFDKHGEAVDGLY KMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSV DAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIA SVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAG ASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHRR MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAAGFDKHGEAVDGLY KMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSV DAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIA SVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAG ASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHRR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample mitochondria DHODH 9606 Homo sapiens 562 Escherichia coli BL21(DE3) Plasmid pET-19b 1 3.62 65.99 VAPOR DIFFUSION, HANGING DROP 4.8 DROPS WERE FORMED BY MIXING EQUAL AMOUNTS OF 18-24 MG/ML PROTEIN IN 100 MM HEPES PH 7.0, 400 MM NACL, 30% GLYCEROL, 1 MM EDTA AND 10 MM N,N- DIMETHYLUNDECYLAMIN-N-OXIDE (C11DAO) WITH A PRECIPITANT SOLUTION OF 0.1 M ACETATE PH 4.8 40 MM C11DAO, 20.8 MM N, N-DIMETHYLDECYLAMINE-N-OXIDE (DDAO), 2 MM DIHYDROOROTATE (DHO) THE HANGING DROPS WERE INCUBATED AGAINST 0.5 ML RESERVOIR OF 0.1 M ACETATE PH 4.8, 1.6-2.2 M AMMONIUM SULFATE AND 30% GLYCEROL., VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 diffrn_source chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Version format compliance Data collection Data collection Database references Derived calculations Refinement description 1 0 2008-05-20 1 1 2011-07-13 1 2 2018-03-07 1 3 2023-08-30 _diffrn_source.pdbx_synchrotron_site _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id N RCSB Y RCSB 2007-05-04 REL REL FMN FLAVIN MONONUCLEOTIDE ORO OROTIC ACID HOH water 1D3G PDB experimental model FMN 398 2 FMN FMN 398 A ORO 399 3 ORO ORO 399 A HOH 400 4 HOH HOH 400 A HOH 401 4 HOH HOH 401 A HOH 402 4 HOH HOH 402 A HOH 403 4 HOH HOH 403 A HOH 404 4 HOH HOH 404 A HOH 405 4 HOH HOH 405 A HOH 406 4 HOH HOH 406 A HOH 407 4 HOH HOH 407 A HOH 408 4 HOH HOH 408 A HOH 409 4 HOH HOH 409 A HOH 410 4 HOH HOH 410 A HOH 411 4 HOH HOH 411 A HOH 412 4 HOH HOH 412 A HOH 413 4 HOH HOH 413 A HOH 414 4 HOH HOH 414 A HOH 415 4 HOH HOH 415 A HOH 416 4 HOH HOH 416 A HOH 417 4 HOH HOH 417 A HOH 418 4 HOH HOH 418 A HOH 419 4 HOH HOH 419 A HOH 420 4 HOH HOH 420 A HOH 421 4 HOH HOH 421 A HOH 422 4 HOH HOH 422 A HOH 423 4 HOH HOH 423 A HOH 424 4 HOH HOH 424 A HOH 425 4 HOH HOH 425 A HOH 426 4 HOH HOH 426 A HOH 427 4 HOH HOH 427 A HOH 428 4 HOH HOH 428 A HOH 429 4 HOH HOH 429 A HOH 430 4 HOH HOH 430 A MET 30 n 1 MET 30 A ALA 31 n 2 ALA 31 A THR 32 n 3 THR 32 A GLY 33 n 4 GLY 33 A ASP 34 n 5 ASP 34 A GLU 35 n 6 GLU 35 A ARG 36 n 7 ARG 36 A PHE 37 n 8 PHE 37 A TYR 38 n 9 TYR 38 A ALA 39 n 10 ALA 39 A GLU 40 n 11 GLU 40 A HIS 41 n 12 HIS 41 A LEU 42 n 13 LEU 42 A MET 43 n 14 MET 43 A PRO 44 n 15 PRO 44 A THR 45 n 16 THR 45 A LEU 46 n 17 LEU 46 A GLN 47 n 18 GLN 47 A GLY 48 n 19 GLY 48 A LEU 49 n 20 LEU 49 A LEU 50 n 21 LEU 50 A ASP 51 n 22 ASP 51 A PRO 52 n 23 PRO 52 A GLU 53 n 24 GLU 53 A SER 54 n 25 SER 54 A ALA 55 n 26 ALA 55 A HIS 56 n 27 HIS 56 A ARG 57 n 28 ARG 57 A LEU 58 n 29 LEU 58 A ALA 59 n 30 ALA 59 A VAL 60 n 31 VAL 60 A ARG 61 n 32 ARG 61 A PHE 62 n 33 PHE 62 A THR 63 n 34 THR 63 A SER 64 n 35 SER 64 A LEU 65 n 36 LEU 65 A GLY 66 n 37 GLY 66 A LEU 67 n 38 LEU 67 A LEU 68 n 39 LEU 68 A PRO 69 n 40 PRO 69 A ARG 70 n 41 ARG 70 A ALA 71 n 42 ALA 71 A ARG 72 n 43 ARG 72 A PHE 73 n 44 PHE 73 A GLN 74 n 45 GLN 74 A ASP 75 n 46 ASP 75 A SER 76 n 47 SER 76 A ASP 77 n 48 ASP 77 A MET 78 n 49 MET 78 A LEU 79 n 50 LEU 79 A GLU 80 n 51 GLU 80 A VAL 81 n 52 VAL 81 A ARG 82 n 53 ARG 82 A VAL 83 n 54 VAL 83 A LEU 84 n 55 LEU 84 A GLY 85 n 56 GLY 85 A HIS 86 n 57 HIS 86 A LYS 87 n 58 LYS 87 A PHE 88 n 59 PHE 88 A ARG 89 n 60 ARG 89 A ASN 90 n 61 ASN 90 A PRO 91 n 62 PRO 91 A VAL 92 n 63 VAL 92 A GLY 93 n 64 GLY 93 A ILE 94 n 65 ILE 94 A ALA 95 n 66 ALA 95 A ALA 96 n 67 ALA 96 A GLY 97 n 68 GLY 97 A PHE 98 n 69 PHE 98 A ASP 99 n 70 ASP 99 A LYS 100 n 71 LYS 100 A HIS 101 n 72 HIS 101 A GLY 102 n 73 GLY 102 A GLU 103 n 74 GLU 103 A ALA 104 n 75 ALA 104 A VAL 105 n 76 VAL 105 A ASP 106 n 77 ASP 106 A GLY 107 n 78 GLY 107 A LEU 108 n 79 LEU 108 A TYR 109 n 80 TYR 109 A LYS 110 n 81 LYS 110 A MET 111 n 82 MET 111 A GLY 112 n 83 GLY 112 A PHE 113 n 84 PHE 113 A GLY 114 n 85 GLY 114 A PHE 115 n 86 PHE 115 A VAL 116 n 87 VAL 116 A GLU 117 n 88 GLU 117 A ILE 118 n 89 ILE 118 A GLY 119 n 90 GLY 119 A SER 120 n 91 SER 120 A VAL 121 n 92 VAL 121 A THR 122 n 93 THR 122 A PRO 123 n 94 PRO 123 A LYS 124 n 95 LYS 124 A PRO 125 n 96 PRO 125 A GLN 126 n 97 GLN 126 A GLU 127 n 98 GLU 127 A GLY 128 n 99 GLY 128 A ASN 129 n 100 ASN 129 A PRO 130 n 101 PRO 130 A ARG 131 n 102 ARG 131 A PRO 132 n 103 PRO 132 A ARG 133 n 104 ARG 133 A VAL 134 n 105 VAL 134 A PHE 135 n 106 PHE 135 A ARG 136 n 107 ARG 136 A LEU 137 n 108 LEU 137 A PRO 138 n 109 PRO 138 A GLU 139 n 110 GLU 139 A ASP 140 n 111 ASP 140 A GLN 141 n 112 GLN 141 A ALA 142 n 113 ALA 142 A VAL 143 n 114 VAL 143 A ILE 144 n 115 ILE 144 A ASN 145 n 116 ASN 145 A ARG 146 n 117 ARG 146 A TYR 147 n 118 TYR 147 A GLY 148 n 119 GLY 148 A PHE 149 n 120 PHE 149 A ASN 150 n 121 ASN 150 A SER 151 n 122 SER 151 A HIS 152 n 123 HIS 152 A GLY 153 n 124 GLY 153 A LEU 154 n 125 LEU 154 A SER 155 n 126 SER 155 A VAL 156 n 127 VAL 156 A VAL 157 n 128 VAL 157 A GLU 158 n 129 GLU 158 A HIS 159 n 130 HIS 159 A ARG 160 n 131 ARG 160 A LEU 161 n 132 LEU 161 A ARG 162 n 133 ARG 162 A ALA 163 n 134 ALA 163 A ARG 164 n 135 ARG 164 A GLN 165 n 136 GLN 165 A GLN 166 n 137 GLN 166 A LYS 167 n 138 LYS 167 A GLN 168 n 139 GLN 168 A ALA 169 n 140 ALA 169 A LYS 170 n 141 LYS 170 A LEU 171 n 142 LEU 171 A THR 172 n 143 THR 172 A GLU 173 n 144 GLU 173 A ASP 174 n 145 ASP 174 A GLY 175 n 146 GLY 175 A LEU 176 n 147 LEU 176 A PRO 177 n 148 PRO 177 A LEU 178 n 149 LEU 178 A GLY 179 n 150 GLY 179 A VAL 180 n 151 VAL 180 A ASN 181 n 152 ASN 181 A LEU 182 n 153 LEU 182 A GLY 183 n 154 GLY 183 A LYS 184 n 155 LYS 184 A ASN 185 n 156 ASN 185 A LYS 186 n 157 LYS 186 A THR 187 n 158 THR 187 A SER 188 n 159 SER 188 A VAL 189 n 160 VAL 189 A ASP 190 n 161 ASP 190 A ALA 191 n 162 ALA 191 A ALA 192 n 163 ALA 192 A GLU 193 n 164 GLU 193 A ASP 194 n 165 ASP 194 A TYR 195 n 166 TYR 195 A ALA 196 n 167 ALA 196 A GLU 197 n 168 GLU 197 A GLY 198 n 169 GLY 198 A VAL 199 n 170 VAL 199 A ARG 200 n 171 ARG 200 A VAL 201 n 172 VAL 201 A LEU 202 n 173 LEU 202 A GLY 203 n 174 GLY 203 A PRO 204 n 175 PRO 204 A LEU 205 n 176 LEU 205 A ALA 206 n 177 ALA 206 A ASP 207 n 178 ASP 207 A TYR 208 n 179 TYR 208 A LEU 209 n 180 LEU 209 A VAL 210 n 181 VAL 210 A VAL 211 n 182 VAL 211 A ASN 212 n 183 ASN 212 A VAL 213 n 184 VAL 213 A SER 214 n 185 SER 214 A SER 215 n 186 SER 215 A PRO 216 n 187 PRO 216 A ASN 217 n 188 ASN 217 A THR 218 n 189 THR 218 A ALA 219 n 190 ALA 219 A GLY 220 n 191 GLY 220 A LEU 221 n 192 LEU 221 A ARG 222 n 193 ARG 222 A SER 223 n 194 SER 223 A LEU 224 n 195 LEU 224 A GLN 225 n 196 GLN 225 A GLY 226 n 197 GLY 226 A LYS 227 n 198 LYS 227 A ALA 228 n 199 ALA 228 A GLU 229 n 200 GLU 229 A LEU 230 n 201 LEU 230 A ARG 231 n 202 ARG 231 A ARG 232 n 203 ARG 232 A LEU 233 n 204 LEU 233 A LEU 234 n 205 LEU 234 A THR 235 n 206 THR 235 A LYS 236 n 207 LYS 236 A VAL 237 n 208 VAL 237 A LEU 238 n 209 LEU 238 A GLN 239 n 210 GLN 239 A GLU 240 n 211 GLU 240 A ARG 241 n 212 ARG 241 A ASP 242 n 213 ASP 242 A GLY 243 n 214 GLY 243 A LEU 244 n 215 LEU 244 A ARG 245 n 216 ARG 245 A ARG 246 n 217 ARG 246 A VAL 247 n 218 VAL 247 A HIS 248 n 219 HIS 248 A ARG 249 n 220 ARG 249 A PRO 250 n 221 PRO 250 A ALA 251 n 222 ALA 251 A VAL 252 n 223 VAL 252 A LEU 253 n 224 LEU 253 A VAL 254 n 225 VAL 254 A LYS 255 n 226 LYS 255 A ILE 256 n 227 ILE 256 A ALA 257 n 228 ALA 257 A PRO 258 n 229 PRO 258 A ASP 259 n 230 ASP 259 A LEU 260 n 231 LEU 260 A THR 261 n 232 THR 261 A SER 262 n 233 SER 262 A GLN 263 n 234 GLN 263 A ASP 264 n 235 ASP 264 A LYS 265 n 236 LYS 265 A GLU 266 n 237 GLU 266 A ASP 267 n 238 ASP 267 A ILE 268 n 239 ILE 268 A ALA 269 n 240 ALA 269 A SER 270 n 241 SER 270 A VAL 271 n 242 VAL 271 A VAL 272 n 243 VAL 272 A LYS 273 n 244 LYS 273 A GLU 274 n 245 GLU 274 A LEU 275 n 246 LEU 275 A GLY 276 n 247 GLY 276 A ILE 277 n 248 ILE 277 A ASP 278 n 249 ASP 278 A GLY 279 n 250 GLY 279 A LEU 280 n 251 LEU 280 A ILE 281 n 252 ILE 281 A VAL 282 n 253 VAL 282 A THR 283 n 254 THR 283 A ASN 284 n 255 ASN 284 A THR 285 n 256 THR 285 A THR 286 n 257 THR 286 A VAL 287 n 258 VAL 287 A SER 288 n 259 SER 288 A ARG 289 n 260 ARG 289 A PRO 290 n 261 PRO 290 A ALA 291 n 262 ALA 291 A GLY 292 n 263 GLY 292 A LEU 293 n 264 LEU 293 A GLN 294 n 265 GLN 294 A GLY 295 n 266 GLY 295 A ALA 296 n 267 ALA 296 A LEU 297 n 268 LEU 297 A ARG 298 n 269 ARG 298 A SER 299 n 270 SER 299 A GLU 300 n 271 GLU 300 A THR 301 n 272 THR 301 A GLY 302 n 273 GLY 302 A GLY 303 n 274 GLY 303 A LEU 304 n 275 LEU 304 A SER 305 n 276 SER 305 A GLY 306 n 277 GLY 306 A LYS 307 n 278 LYS 307 A PRO 308 n 279 PRO 308 A LEU 309 n 280 LEU 309 A ARG 310 n 281 ARG 310 A ASP 311 n 282 ASP 311 A LEU 312 n 283 LEU 312 A SER 313 n 284 SER 313 A THR 314 n 285 THR 314 A GLN 315 n 286 GLN 315 A THR 316 n 287 THR 316 A ILE 317 n 288 ILE 317 A ARG 318 n 289 ARG 318 A GLU 319 n 290 GLU 319 A MET 320 n 291 MET 320 A TYR 321 n 292 TYR 321 A ALA 322 n 293 ALA 322 A LEU 323 n 294 LEU 323 A THR 324 n 295 THR 324 A GLN 325 n 296 GLN 325 A GLY 326 n 297 GLY 326 A ARG 327 n 298 ARG 327 A VAL 328 n 299 VAL 328 A PRO 329 n 300 PRO 329 A ILE 330 n 301 ILE 330 A ILE 331 n 302 ILE 331 A GLY 332 n 303 GLY 332 A VAL 333 n 304 VAL 333 A GLY 334 n 305 GLY 334 A GLY 335 n 306 GLY 335 A VAL 336 n 307 VAL 336 A SER 337 n 308 SER 337 A SER 338 n 309 SER 338 A GLY 339 n 310 GLY 339 A GLN 340 n 311 GLN 340 A ASP 341 n 312 ASP 341 A ALA 342 n 313 ALA 342 A LEU 343 n 314 LEU 343 A GLU 344 n 315 GLU 344 A LYS 345 n 316 LYS 345 A ILE 346 n 317 ILE 346 A ARG 347 n 318 ARG 347 A ALA 348 n 319 ALA 348 A GLY 349 n 320 GLY 349 A ALA 350 n 321 ALA 350 A SER 351 n 322 SER 351 A LEU 352 n 323 LEU 352 A VAL 353 n 324 VAL 353 A GLN 354 n 325 GLN 354 A LEU 355 n 326 LEU 355 A TYR 356 n 327 TYR 356 A THR 357 n 328 THR 357 A ALA 358 n 329 ALA 358 A LEU 359 n 330 LEU 359 A THR 360 n 331 THR 360 A PHE 361 n 332 PHE 361 A TRP 362 n 333 TRP 362 A GLY 363 n 334 GLY 363 A PRO 364 n 335 PRO 364 A PRO 365 n 336 PRO 365 A VAL 366 n 337 VAL 366 A VAL 367 n 338 VAL 367 A GLY 368 n 339 GLY 368 A LYS 369 n 340 LYS 369 A VAL 370 n 341 VAL 370 A LYS 371 n 342 LYS 371 A ARG 372 n 343 ARG 372 A GLU 373 n 344 GLU 373 A LEU 374 n 345 LEU 374 A GLU 375 n 346 GLU 375 A ALA 376 n 347 ALA 376 A LEU 377 n 348 LEU 377 A LEU 378 n 349 LEU 378 A LYS 379 n 350 LYS 379 A GLU 380 n 351 GLU 380 A GLN 381 n 352 GLN 381 A GLY 382 n 353 GLY 382 A PHE 383 n 354 PHE 383 A GLY 384 n 355 GLY 384 A GLY 385 n 356 GLY 385 A VAL 386 n 357 VAL 386 A THR 387 n 358 THR 387 A ASP 388 n 359 ASP 388 A ALA 389 n 360 ALA 389 A ILE 390 n 361 ILE 390 A GLY 391 n 362 GLY 391 A ALA 392 n 363 ALA 392 A ASP 393 n 364 ASP 393 A HIS 394 n 365 HIS 394 A ARG 395 n 366 ARG 395 A ARG 396 n 367 ARG 396 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 81 A N VAL 52 A O PHE 88 A O PHE 59 A N ILE 94 A N ILE 65 A O PHE 115 A O PHE 86 A N VAL 116 A N VAL 87 A O GLY 179 A O GLY 150 A N VAL 180 A N VAL 151 A O VAL 210 A O VAL 181 A N LEU 209 A N LEU 180 A O ALA 251 A O ALA 222 A N VAL 254 A N VAL 225 A O ILE 281 A O ILE 252 A N VAL 282 A N VAL 253 A O ILE 331 A O ILE 302 A N GLY 332 A N GLY 303 A O LEU 352 A O LEU 323 A O VAL 353 A O VAL 324 A N GLY 93 A N GLY 64 A N PHE 135 A N PHE 106 A O ILE 144 A O ILE 115 A N VAL 143 A N VAL 114 A O SER 305 A O SER 276 1 9.61 1.50 119.30 128.91 A A A C N CA ALA PRO PRO 257 258 258 Y 1 A A CG CD GLU GLU 319 319 0.113 0.015 1.515 1.628 N 1 A HIS 41 -104.71 -74.27 1 A LEU 68 -47.51 151.72 1 A ALA 71 -38.89 125.24 1 A ASP 99 -108.78 69.44 1 A PHE 149 64.09 61.17 1 A ARG 164 -140.58 17.65 1 A SER 188 -36.58 119.99 1 A ALA 219 -17.48 107.57 1 A THR 283 108.81 115.12 1 A ASN 284 -65.53 -165.04 1 A ARG 310 -39.97 -71.71 1 A TYR 356 -145.64 -63.56 1 A PRO 365 -37.30 -32.93 17.718 0.690 0.340 0.000 0.690 0.000 -1.030 0.905 0.827 0.253 0.190 0.193 3.000 19.500 597 11938 5.000 100.000 14.011 0.266 RANDOM 1 THROUGHOUT 0.00 MOLECULAR REPLACEMENT 0.389 0.800 0.800 1.400 1D3G MAXIMUM LIKELIHOOD MASK 3.000 19.500 31 2878 42 0 2805 0.017 0.022 2895 1.787 2.002 3918 6.748 5.000 366 38.969 22.880 125 19.459 15.000 498 16.759 15.000 31 0.113 0.200 439 0.005 0.020 2186 0.242 0.200 1511 0.319 0.200 1992 0.169 0.200 135 0.249 0.200 39 0.166 0.200 9 0.790 1.500 1854 1.367 2.000 2904 2.065 3.000 1171 3.533 4.500 1014 0.292 0.228 3.076 42 800 842 20 100.000 18.753 3.000 19.50 2PRM 11941 -3.00 0.250 1,2 6.850 99.500 0.346 3.00 4.00 5.0 6817 100.00 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html XSCALE package refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program data extraction PDB sw-help@rcsb.rutgers.edu April. 3, 2006 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 2.000 data collection MAR345dtb data reduction XDS phasing CNS N The structures of apo- and inhibitor bound human dihydroorotate dehydrogenase reveal conformational flexibility within the inhibitor binding site 1 N N 2 N N 3 N N 4 N N biological unit is a monomer A ASP 34 A ASP 5 HELX_P A HIS 41 A HIS 12 1 1 8 A HIS 41 A HIS 12 HELX_P A LEU 50 A LEU 21 1 2 10 A ASP 51 A ASP 22 HELX_P A GLY 66 A GLY 37 1 3 16 A SER 76 A SER 47 HELX_P A GLU 80 A GLU 51 5 4 5 A ALA 104 A ALA 75 HELX_P A MET 111 A MET 82 1 5 8 A PRO 138 A PRO 109 HELX_P A ASP 140 A ASP 111 5 6 3 A HIS 152 A HIS 123 HELX_P A ALA 163 A ALA 134 1 7 12 A ARG 164 A ARG 135 HELX_P A ASP 174 A ASP 145 1 8 11 A ASP 190 A ASP 161 HELX_P A GLY 203 A GLY 174 1 9 14 A PRO 204 A PRO 175 HELX_P A ALA 206 A ALA 177 5 10 3 A GLY 220 A GLY 191 HELX_P A GLN 225 A GLN 196 5 11 6 A GLY 226 A GLY 197 HELX_P A GLY 243 A GLY 214 1 12 18 A LEU 244 A LEU 215 HELX_P A ARG 249 A ARG 220 5 13 6 A THR 261 A THR 232 HELX_P A GLY 276 A GLY 247 1 14 16 A LEU 309 A LEU 280 HELX_P A THR 324 A THR 295 1 15 16 A SER 338 A SER 309 HELX_P A GLY 349 A GLY 320 1 16 12 A TYR 356 A TYR 327 HELX_P A GLY 363 A GLY 334 1 17 8 A PRO 364 A PRO 335 HELX_P A GLN 381 A GLN 352 1 18 18 A GLY 385 A GLY 356 HELX_P A ILE 390 A ILE 361 1 19 6 A GLY 391 A GLY 362 HELX_P A ARG 395 A ARG 366 5 20 5 OXIDOREDUCTASE protein inhibitor complex, OXIDOREDUCTASE A ARG 131 A ARG 102 1 A PRO 132 A PRO 103 4.77 PYRD_HUMAN UNP 1 30 Q02127 MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAAGFDKHGEAVDGLY KMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSV DAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIA SVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAG ASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHRR 29 395 2PRM 30 396 Q02127 A 1 1 367 2 9 3 anti-parallel parallel parallel parallel parallel parallel parallel parallel parallel anti-parallel anti-parallel A VAL 81 A VAL 52 A ARG 82 A ARG 53 A LYS 87 A LYS 58 A PHE 88 A PHE 59 A VAL 92 A VAL 63 A ILE 94 A ILE 65 A PHE 115 A PHE 86 A VAL 121 A VAL 92 A LEU 178 A LEU 149 A LEU 182 A LEU 153 A TYR 208 A TYR 179 A ASN 212 A ASN 183 A ALA 251 A ALA 222 A ILE 256 A ILE 227 A GLY 279 A GLY 250 A VAL 282 A VAL 253 A ILE 330 A ILE 301 A VAL 333 A VAL 304 A LEU 352 A LEU 323 A LEU 355 A LEU 326 A VAL 92 A VAL 63 A ILE 94 A ILE 65 A VAL 134 A VAL 105 A LEU 137 A LEU 108 A ALA 142 A ALA 113 A ASN 145 A ASN 116 A GLY 303 A GLY 274 A GLY 306 A GLY 277 BINDING SITE FOR RESIDUE FMN A 398 A FMN 398 Software 19 BINDING SITE FOR RESIDUE ORO A 399 A ORO 399 Software 10 A ALA 96 A ALA 67 19 1_555 A GLY 97 A GLY 68 19 1_555 A LYS 100 A LYS 71 19 1_555 A SER 120 A SER 91 19 1_555 A ASN 145 A ASN 116 19 1_555 A ASN 181 A ASN 152 19 1_555 A ASN 212 A ASN 183 19 1_555 A LYS 255 A LYS 226 19 1_555 A THR 283 A THR 254 19 1_555 A ASN 284 A ASN 255 19 1_555 A SER 305 A SER 276 19 1_555 A GLY 306 A GLY 277 19 1_555 A LEU 309 A LEU 280 19 1_555 A GLY 334 A GLY 305 19 1_555 A GLY 335 A GLY 306 19 1_555 A LEU 355 A LEU 326 19 1_555 A TYR 356 A TYR 327 19 1_555 A THR 357 A THR 328 19 1_555 A HOH 407 D HOH 19 1_555 A LYS 100 A LYS 71 10 1_555 A ASN 145 A ASN 116 10 1_555 A TYR 147 A TYR 118 10 1_555 A GLY 148 A GLY 119 10 1_555 A PHE 149 A PHE 120 10 1_555 A ASN 212 A ASN 183 10 1_555 A SER 215 A SER 186 10 1_555 A ASN 217 A ASN 188 10 1_555 A ASN 284 A ASN 255 10 1_555 A THR 285 A THR 256 10 1_555 154 P 32 2 1