0.014948
0.008630
0.000000
0.000000
0.017260
0.000000
0.000000
0.000000
0.024510
0.00000
0.00000
0.00000
Genick, U.K.
Borgstahl, G.E.O.
Ng, K.
Ren, Z.
Pradervand, C.
Burke, P.
Srajer, V.
Teng, T.
Schildkamp, W.
Mcree, D.E.
Moffat, K.
Getzoff, E.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
66.900
66.900
40.800
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C9 H8 O3
164.158
4'-HYDROXYCINNAMIC ACID
PARA-COUMARIC ACID
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Science
SCIEAS
0038
0036-8075
275
1471
1475
10.1126/science.275.5305.1471
9045611
Structure of a protein photocycle intermediate by millisecond time-resolved crystallography.
1997
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
261
1
IMAGE PLATE
1993-06
FUJI
ALUMINUM FOIL 150 MICRON
L
x-ray
1
0.7
1.0
2.0
1.0
X26C
NSLS
0.7
0.7, 2.0
SYNCHROTRON
NSLS BEAMLINE X26C
13888.575
PHOTOACTIVE YELLOW PROTEIN
1
nat
polymer
164.158
4'-HYDROXYCINNAMIC ACID
1
syn
non-polymer
18.015
water
56
nat
water
no
no
MEHVAFGSEDIENTLAKMDDGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFK
EGVASGNLNTMFEYTFDYQMTPTKVKVHMKKALSGDSYWVFVKRV
MEHVAFGSEDIENTLAKMDDGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFK
EGVASGNLNTMFEYTFDYQMTPTKVKVHMKKALSGDSYWVFVKRV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Halorhodospira
sample
1053
Halorhodospira halophila
BN9626
1
1.88
35.
THE MODEL OF THE GROUND STATE STRUCTURE WAS USED
4.8
pH 4.8
pdbx_database_status
software
struct_conf
struct_conf_type
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
Refinement description
1
0
1998-04-29
1
1
2008-03-25
1
2
2011-07-13
1
3
2017-11-29
_pdbx_database_status.process_site
_software.name
Y
BNL
1997-02-03
REL
HC4
4'-HYDROXYCINNAMIC ACID
HOH
water
HC4
69
2
HC4
HC4
126
A
HOH
200
3
HOH
HOH
200
A
HOH
201
3
HOH
HOH
201
A
HOH
202
3
HOH
HOH
202
A
HOH
203
3
HOH
HOH
203
A
HOH
204
3
HOH
HOH
204
A
HOH
206
3
HOH
HOH
206
A
HOH
207
3
HOH
HOH
207
A
HOH
208
3
HOH
HOH
208
A
HOH
209
3
HOH
HOH
209
A
HOH
210
3
HOH
HOH
210
A
HOH
211
3
HOH
HOH
211
A
HOH
212
3
HOH
HOH
212
A
HOH
213
3
HOH
HOH
213
A
HOH
214
3
HOH
HOH
214
A
HOH
217
3
HOH
HOH
217
A
HOH
218
3
HOH
HOH
218
A
HOH
220
3
HOH
HOH
220
A
HOH
221
3
HOH
HOH
221
A
HOH
222
3
HOH
HOH
222
A
HOH
223
3
HOH
HOH
223
A
HOH
224
3
HOH
HOH
224
A
HOH
225
3
HOH
HOH
225
A
HOH
226
3
HOH
HOH
226
A
HOH
227
3
HOH
HOH
227
A
HOH
229
3
HOH
HOH
229
A
HOH
231
3
HOH
HOH
231
A
HOH
232
3
HOH
HOH
232
A
HOH
233
3
HOH
HOH
233
A
HOH
234
3
HOH
HOH
234
A
HOH
235
3
HOH
HOH
235
A
HOH
236
3
HOH
HOH
236
A
HOH
237
3
HOH
HOH
237
A
HOH
240
3
HOH
HOH
240
A
HOH
241
3
HOH
HOH
241
A
HOH
244
3
HOH
HOH
244
A
HOH
245
3
HOH
HOH
245
A
HOH
248
3
HOH
HOH
248
A
HOH
249
3
HOH
HOH
249
A
HOH
250
3
HOH
HOH
250
A
HOH
251
3
HOH
HOH
251
A
HOH
253
3
HOH
HOH
253
A
HOH
254
3
HOH
HOH
254
A
HOH
257
3
HOH
HOH
257
A
HOH
258
3
HOH
HOH
258
A
HOH
260
3
HOH
HOH
260
A
HOH
261
3
HOH
HOH
261
A
HOH
262
3
HOH
HOH
262
A
HOH
264
3
HOH
HOH
264
A
HOH
274
3
HOH
HOH
274
A
HOH
277
3
HOH
HOH
277
A
HOH
278
3
HOH
HOH
278
A
HOH
279
3
HOH
HOH
279
A
HOH
282
3
HOH
HOH
282
A
HOH
284
3
HOH
HOH
284
A
HOH
286
3
HOH
HOH
286
A
HOH
290
3
HOH
HOH
290
A
MET
1
n
1
MET
1
A
GLU
2
n
2
GLU
2
A
HIS
3
n
3
HIS
3
A
VAL
4
n
4
VAL
4
A
ALA
5
n
5
ALA
5
A
PHE
6
n
6
PHE
6
A
GLY
7
n
7
GLY
7
A
SER
8
n
8
SER
8
A
GLU
9
n
9
GLU
9
A
ASP
10
n
10
ASP
10
A
ILE
11
n
11
ILE
11
A
GLU
12
n
12
GLU
12
A
ASN
13
n
13
ASN
13
A
THR
14
n
14
THR
14
A
LEU
15
n
15
LEU
15
A
ALA
16
n
16
ALA
16
A
LYS
17
n
17
LYS
17
A
MET
18
n
18
MET
18
A
ASP
19
n
19
ASP
19
A
ASP
20
n
20
ASP
20
A
GLY
21
n
21
GLY
21
A
GLN
22
n
22
GLN
22
A
LEU
23
n
23
LEU
23
A
ASP
24
n
24
ASP
24
A
GLY
25
n
25
GLY
25
A
LEU
26
n
26
LEU
26
A
ALA
27
n
27
ALA
27
A
PHE
28
n
28
PHE
28
A
GLY
29
n
29
GLY
29
A
ALA
30
n
30
ALA
30
A
ILE
31
n
31
ILE
31
A
GLN
32
n
32
GLN
32
A
LEU
33
n
33
LEU
33
A
ASP
34
n
34
ASP
34
A
GLY
35
n
35
GLY
35
A
ASP
36
n
36
ASP
36
A
GLY
37
n
37
GLY
37
A
ASN
38
n
38
ASN
38
A
ILE
39
n
39
ILE
39
A
LEU
40
n
40
LEU
40
A
GLN
41
n
41
GLN
41
A
TYR
42
n
42
TYR
42
A
ASN
43
n
43
ASN
43
A
ALA
44
n
44
ALA
44
A
ALA
45
n
45
ALA
45
A
GLU
46
n
46
GLU
46
A
GLY
47
n
47
GLY
47
A
ASP
48
n
48
ASP
48
A
ILE
49
n
49
ILE
49
A
THR
50
n
50
THR
50
A
GLY
51
n
51
GLY
51
A
ARG
52
n
52
ARG
52
A
ASP
53
n
53
ASP
53
A
PRO
54
n
54
PRO
54
A
LYS
55
n
55
LYS
55
A
GLN
56
n
56
GLN
56
A
VAL
57
n
57
VAL
57
A
ILE
58
n
58
ILE
58
A
GLY
59
n
59
GLY
59
A
LYS
60
n
60
LYS
60
A
ASN
61
n
61
ASN
61
A
PHE
62
n
62
PHE
62
A
PHE
63
n
63
PHE
63
A
LYS
64
n
64
LYS
64
A
ASP
65
n
65
ASP
65
A
VAL
66
n
66
VAL
66
A
ALA
67
n
67
ALA
67
A
PRO
68
n
68
PRO
68
A
CYS
69
n
69
CYS
69
A
THR
70
n
70
THR
70
A
ASP
71
n
71
ASP
71
A
SER
72
n
72
SER
72
A
PRO
73
n
73
PRO
73
A
GLU
74
n
74
GLU
74
A
PHE
75
n
75
PHE
75
A
TYR
76
n
76
TYR
76
A
GLY
77
n
77
GLY
77
A
LYS
78
n
78
LYS
78
A
PHE
79
n
79
PHE
79
A
LYS
80
n
80
LYS
80
A
GLU
81
n
81
GLU
81
A
GLY
82
n
82
GLY
82
A
VAL
83
n
83
VAL
83
A
ALA
84
n
84
ALA
84
A
SER
85
n
85
SER
85
A
GLY
86
n
86
GLY
86
A
ASN
87
n
87
ASN
87
A
LEU
88
n
88
LEU
88
A
ASN
89
n
89
ASN
89
A
THR
90
n
90
THR
90
A
MET
91
n
91
MET
91
A
PHE
92
n
92
PHE
92
A
GLU
93
n
93
GLU
93
A
TYR
94
n
94
TYR
94
A
THR
95
n
95
THR
95
A
PHE
96
n
96
PHE
96
A
ASP
97
n
97
ASP
97
A
TYR
98
n
98
TYR
98
A
GLN
99
n
99
GLN
99
A
MET
100
n
100
MET
100
A
THR
101
n
101
THR
101
A
PRO
102
n
102
PRO
102
A
THR
103
n
103
THR
103
A
LYS
104
n
104
LYS
104
A
VAL
105
n
105
VAL
105
A
LYS
106
n
106
LYS
106
A
VAL
107
n
107
VAL
107
A
HIS
108
n
108
HIS
108
A
MET
109
n
109
MET
109
A
LYS
110
n
110
LYS
110
A
LYS
111
n
111
LYS
111
A
ALA
112
n
112
ALA
112
A
LEU
113
n
113
LEU
113
A
SER
114
n
114
SER
114
A
GLY
115
n
115
GLY
115
A
ASP
116
n
116
ASP
116
A
SER
117
n
117
SER
117
A
TYR
118
n
118
TYR
118
A
TRP
119
n
119
TRP
119
A
VAL
120
n
120
VAL
120
A
PHE
121
n
121
PHE
121
A
VAL
122
n
122
VAL
122
A
LYS
123
n
123
LYS
123
A
ARG
124
n
124
ARG
124
A
VAL
125
n
125
VAL
125
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
62
A
N
PHE
62
A
O
GLY
37
A
O
GLY
37
A
N
LEU
40
A
N
LEU
40
A
O
GLN
32
A
O
GLN
32
A
N
ILE
31
A
N
ILE
31
A
O
VAL
120
A
O
VAL
120
A
N
PHE
121
A
N
PHE
121
A
O
HIS
108
A
O
HIS
108
A
N
MET
109
A
N
MET
109
A
O
THR
90
A
O
THR
90
A
N
PHE
62
A
N
PHE
62
A
O
GLY
37
A
O
GLY
37
A
N
LEU
40
A
N
LEU
40
A
O
GLN
32
A
O
GLN
32
A
N
ILE
31
A
N
ILE
31
A
O
VAL
120
A
O
VAL
120
A
N
PHE
121
A
N
PHE
121
A
O
HIS
108
A
O
HIS
108
A
N
MET
109
A
N
MET
109
A
O
THR
90
A
O
THR
90
1
A
PHE
75
-130.59
-74.27
1
A
ASN
89
-163.00
94.56
1
A
ASP
97
-141.79
18.54
1
A
ASP
116
-107.86
58.81
PARHCSDX.PRO
TOPH19.PEP
0.2040000
0.2040000
1.9
10.0
7392
89.3
1
3.0
1.9
10.0
56
1139
11
0
1072
0.013
1.605
0.2800000
1.99
765
8
74.34
1.9
10.0
2PYP
10354
1
5.5
92.3
1.9
2.1
86.0
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
data reduction
LaueView
data scaling
LaueView
phasing
X-PLOR
3.1
PHOTOACTIVE YELLOW PROTEIN, 4'-HYDROXYCINNAMIC ACID
PHOTOACTIVE YELLOW PROTEIN, PHOTOSTATIONARY STATE, 50% GROUND STATE, 50% BLEACHED
1
N
N
2
N
N
3
N
N
A
ILE
11
A
ILE
11
HELX_P
A
LEU
15
A
LEU
15
1
A-1
5
A
ASP
19
A
ASP
19
HELX_P
A
LEU
23
A
LEU
23
1
A-2
5
A
ASN
43
A
ASN
43
HELX_P
A
THR
50
A
THR
50
1
A-3
8
A
ASP
53
A
ASP
53
HELX_P
A
VAL
57
A
VAL
57
1
A-4
5
A
ASN
61
A
ASN
61
HELX_P
A
ALA
67
A
ALA
67
3
PI
7
A
PHE
75
A
PHE
75
HELX_P
A
GLY
86
A
GLY
86
1
A-5
12
covale
1.750
A
A
A
HC4
126
B
C1
HC4
1_555
A
CYS
69
A
SG
CYS
69
1_555
covale
2.017
A
B
A
HC4
126
B
C1
HC4
1_555
A
CYS
69
A
SG
CYS
69
1_555
covale
1.476
B
A
A
HC4
126
B
C1
HC4
1_555
A
CYS
69
A
SG
CYS
69
1_555
covale
1.744
B
B
A
HC4
126
B
C1
HC4
1_555
A
CYS
69
A
SG
CYS
69
1_555
covale
1.669
B
A
A
HC4
126
B
C3'
HC4
1_555
A
ARG
52
A
NH2
ARG
52
1_555
covale
2.025
B
A
A
HC4
126
B
C4'
HC4
1_555
A
ARG
52
A
NE
ARG
52
1_555
covale
1.459
B
A
A
HC4
126
B
C4'
HC4
1_555
A
ARG
52
A
CZ
ARG
52
1_555
covale
1.571
B
A
A
HC4
126
B
C4'
HC4
1_555
A
ARG
52
A
NH2
ARG
52
1_555
covale
1.026
B
A
A
HC4
126
B
O4'
HC4
1_555
A
ARG
52
A
NE
ARG
52
1_555
covale
0.778
B
A
A
HC4
126
B
O4'
HC4
1_555
A
ARG
52
A
CZ
ARG
52
1_555
covale
2.063
B
A
A
HC4
126
B
O4'
HC4
1_555
A
ARG
52
A
NH1
ARG
52
1_555
covale
1.332
B
A
A
HC4
126
B
O4'
HC4
1_555
A
ARG
52
A
NH2
ARG
52
1_555
PHOTORECEPTOR
PHOTORECEPTOR, CHROMOPHORE, LIGHT SENSOR FOR PHOTOTAXIS
PYP_ECTHA
UNP
1
1
P16113
MEHVAFGSEDIENTLAKMDDGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFK
EGVASGNLNTMFEYTFDYQMTPTKVKVHMKKALSGDSYWVFVKRV
1
125
2PYP
1
125
P16113
A
1
1
125
6
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
60
A
LYS
60
A
PHE
62
A
PHE
62
A
GLY
37
A
GLY
37
A
GLN
41
A
GLN
41
A
GLY
29
A
GLY
29
A
ASP
34
A
ASP
34
A
SER
117
A
SER
117
A
VAL
125
A
VAL
125
A
THR
103
A
THR
103
A
ALA
112
A
ALA
112
A
LEU
88
A
LEU
88
A
PHE
96
A
PHE
96
A
LYS
60
A
LYS
60
A
PHE
62
A
PHE
62
A
GLY
37
A
GLY
37
A
GLN
41
A
GLN
41
A
GLY
29
A
GLY
29
A
ASP
34
A
ASP
34
A
SER
117
A
SER
117
A
VAL
125
A
VAL
125
A
THR
103
A
THR
103
A
ALA
112
A
ALA
112
A
LEU
88
A
LEU
88
A
PHE
96
A
PHE
96
BINDING SITE FOR RESIDUE HC4 A 126
Software
12
A
TYR
42
A
TYR
42
12
1_555
A
GLU
46
A
GLU
46
12
1_555
A
THR
50
A
THR
50
12
1_555
A
ARG
52
A
ARG
52
12
1_555
A
VAL
66
A
VAL
66
12
1_555
A
ALA
67
A
ALA
67
12
1_555
A
PRO
68
A
PRO
68
12
1_555
A
CYS
69
A
CYS
69
12
1_555
A
THR
70
A
THR
70
12
1_555
A
PHE
96
A
PHE
96
12
1_555
A
TYR
98
A
TYR
98
12
1_555
A
MET
100
A
MET
100
12
1_555
173
P 63