0.012404
0.000000
0.000947
0.000000
0.023853
0.000000
0.000000
0.000000
0.009460
0.000000
0.000000
0.000000
Stagno, J.
Luecke, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
94.370
90.000
80.620
41.924
106.017
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
URIDINE-5'-MONOPHOSPHATE
non-polymer
C9 H15 N2 O15 P3
484.141
URIDINE 5'-TRIPHOSPHATE
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
MG
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
N
C
N
375
N
N
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
O
N
381
R
C
N
382
R
C
N
383
N
O
N
384
S
C
N
385
R
C
N
386
N
O
N
387
N
O
N
388
N
C
N
389
N
O
N
390
N
P
N
391
N
O
N
392
N
O
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
R
P
N
408
N
O
N
409
N
O
N
410
N
O
N
411
N
O
N
412
S
P
N
413
N
O
N
414
N
O
N
415
N
O
N
416
N
P
N
417
N
O
N
418
N
O
N
419
N
O
N
420
N
C
N
421
R
C
N
422
N
O
N
423
R
C
N
424
R
C
N
425
N
O
N
426
S
C
N
427
N
O
Y
428
N
N
Y
429
N
C
Y
430
N
C
N
431
N
O
Y
432
N
N
Y
433
N
C
N
434
N
O
Y
435
N
C
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
N
N
452
S
C
N
453
N
C
N
454
N
O
N
455
N
C
N
456
N
C
N
457
N
C
N
458
N
O
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
Y
427
N
sing
Y
428
N
sing
Y
429
N
doub
N
430
N
sing
N
431
N
doub
Y
432
N
sing
Y
433
N
sing
N
434
N
sing
N
435
N
doub
Y
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
doub
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
US
Proc.Natl.Acad.Sci.Usa
PNASA6
0040
0027-8424
104
14634
14639
10.1073/pnas.0704259104
17785418
Dual role of the RNA substrate in selectivity and catalysis by terminal uridylyl transferases.
2007
10.2210/pdb2q0f/pdb
pdb_00002q0f
1
2006-07-19
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
BL1-5
SSRL
0.979
SYNCHROTRON
SSRL BEAMLINE BL1-5
39879.395
RNA uridylyl transferase
2.7.7.52
2
man
polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
484.141
URIDINE 5'-TRIPHOSPHATE
1
syn
non-polymer
324.181
URIDINE-5'-MONOPHOSPHATE
2
syn
non-polymer
18.015
water
184
nat
water
RNA uridylyltransferase 4
no
no
MGSSHHHHHHSSGLVPRGSHMPPSPAVVGRSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGV
HEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKGGGAVDFDITAY
RRNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEP
LPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISLNRPGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYE
LNLNVGRNVTPLKRDFLRRHLEKARDTALLTIV
MGSSHHHHHHSSGLVPRGSHMPPSPAVVGRSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGV
HEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKGGGAVDFDITAY
RRNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEP
LPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISLNRPGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYE
LNLNVGRNVTPLKRDFLRRHLEKARDTALLTIV
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Trypanosoma
Escherichia
Escherichia coli
sample
TUT4
5691
Trypanosoma brucei
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
plasmid
pET15b
1
2.24
45.06
VAPOR DIFFUSION, HANGING DROP
6.5
100 mM sodium cacodylate, 200 mM calcium acetate, 18% PEG-8000, 4 mM MgCl2, 50 uM UTP, crystals soaked in 10 mM UMP for 30 minutes, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2007-08-28
1
1
2011-07-13
1
2
2017-10-18
1
3
2023-08-30
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The same protein with bound UTP substrate.
The same protein with bound dUTP substrate.
RCSB
Y
RCSB
2007-05-21
REL
REL
MG
MAGNESIUM ION
UTP
URIDINE 5'-TRIPHOSPHATE
U5P
URIDINE-5'-MONOPHOSPHATE
HOH
water
2IKF
pdb entry 2IKF
PDB
experimental model
MG
401
2
MG
MG
401
A
MG
402
2
MG
MG
402
A
UTP
501
3
UTP
UTP
501
A
U5P
502
4
U5P
U5P
502
A
U5P
503
4
U5P
U5P
503
B
HOH
1
5
HOH
HOH
503
A
HOH
2
5
HOH
HOH
504
A
HOH
3
5
HOH
HOH
505
A
HOH
4
5
HOH
HOH
506
A
HOH
5
5
HOH
HOH
507
A
HOH
6
5
HOH
HOH
508
A
HOH
7
5
HOH
HOH
509
A
HOH
8
5
HOH
HOH
510
A
HOH
9
5
HOH
HOH
511
A
HOH
11
5
HOH
HOH
512
A
HOH
12
5
HOH
HOH
513
A
HOH
14
5
HOH
HOH
514
A
HOH
15
5
HOH
HOH
515
A
HOH
16
5
HOH
HOH
516
A
HOH
19
5
HOH
HOH
517
A
HOH
21
5
HOH
HOH
518
A
HOH
23
5
HOH
HOH
519
A
HOH
24
5
HOH
HOH
520
A
HOH
26
5
HOH
HOH
521
A
HOH
27
5
HOH
HOH
522
A
HOH
29
5
HOH
HOH
523
A
HOH
30
5
HOH
HOH
524
A
HOH
31
5
HOH
HOH
525
A
HOH
32
5
HOH
HOH
526
A
HOH
34
5
HOH
HOH
527
A
HOH
36
5
HOH
HOH
528
A
HOH
37
5
HOH
HOH
529
A
HOH
38
5
HOH
HOH
530
A
HOH
40
5
HOH
HOH
531
A
HOH
41
5
HOH
HOH
532
A
HOH
42
5
HOH
HOH
533
A
HOH
43
5
HOH
HOH
534
A
HOH
46
5
HOH
HOH
535
A
HOH
47
5
HOH
HOH
536
A
HOH
48
5
HOH
HOH
537
A
HOH
50
5
HOH
HOH
538
A
HOH
51
5
HOH
HOH
539
A
HOH
52
5
HOH
HOH
540
A
HOH
59
5
HOH
HOH
541
A
HOH
62
5
HOH
HOH
542
A
HOH
63
5
HOH
HOH
543
A
HOH
64
5
HOH
HOH
544
A
HOH
67
5
HOH
HOH
545
A
HOH
69
5
HOH
HOH
546
A
HOH
70
5
HOH
HOH
547
A
HOH
73
5
HOH
HOH
548
A
HOH
76
5
HOH
HOH
549
A
HOH
77
5
HOH
HOH
550
A
HOH
79
5
HOH
HOH
551
A
HOH
80
5
HOH
HOH
552
A
HOH
83
5
HOH
HOH
553
A
HOH
85
5
HOH
HOH
554
A
HOH
87
5
HOH
HOH
555
A
HOH
89
5
HOH
HOH
556
A
HOH
91
5
HOH
HOH
557
A
HOH
94
5
HOH
HOH
558
A
HOH
98
5
HOH
HOH
559
A
HOH
99
5
HOH
HOH
560
A
HOH
100
5
HOH
HOH
561
A
HOH
101
5
HOH
HOH
562
A
HOH
103
5
HOH
HOH
563
A
HOH
105
5
HOH
HOH
564
A
HOH
106
5
HOH
HOH
565
A
HOH
107
5
HOH
HOH
566
A
HOH
108
5
HOH
HOH
567
A
HOH
109
5
HOH
HOH
568
A
HOH
112
5
HOH
HOH
569
A
HOH
113
5
HOH
HOH
570
A
HOH
114
5
HOH
HOH
571
A
HOH
115
5
HOH
HOH
572
A
HOH
118
5
HOH
HOH
573
A
HOH
121
5
HOH
HOH
574
A
HOH
125
5
HOH
HOH
575
A
HOH
126
5
HOH
HOH
576
A
HOH
127
5
HOH
HOH
577
A
HOH
128
5
HOH
HOH
578
A
HOH
129
5
HOH
HOH
579
A
HOH
133
5
HOH
HOH
580
A
HOH
134
5
HOH
HOH
581
A
HOH
136
5
HOH
HOH
582
A
HOH
138
5
HOH
HOH
583
A
HOH
139
5
HOH
HOH
584
A
HOH
140
5
HOH
HOH
585
A
HOH
141
5
HOH
HOH
586
A
HOH
144
5
HOH
HOH
587
A
HOH
146
5
HOH
HOH
588
A
HOH
147
5
HOH
HOH
589
A
HOH
148
5
HOH
HOH
590
A
HOH
149
5
HOH
HOH
591
A
HOH
150
5
HOH
HOH
592
A
HOH
151
5
HOH
HOH
593
A
HOH
152
5
HOH
HOH
594
A
HOH
153
5
HOH
HOH
595
A
HOH
157
5
HOH
HOH
596
A
HOH
162
5
HOH
HOH
597
A
HOH
163
5
HOH
HOH
598
A
HOH
164
5
HOH
HOH
599
A
HOH
165
5
HOH
HOH
600
A
HOH
167
5
HOH
HOH
601
A
HOH
168
5
HOH
HOH
602
A
HOH
171
5
HOH
HOH
603
A
HOH
172
5
HOH
HOH
604
A
HOH
173
5
HOH
HOH
605
A
HOH
174
5
HOH
HOH
606
A
HOH
175
5
HOH
HOH
607
A
HOH
176
5
HOH
HOH
608
A
HOH
177
5
HOH
HOH
609
A
HOH
178
5
HOH
HOH
610
A
HOH
179
5
HOH
HOH
611
A
HOH
181
5
HOH
HOH
612
A
HOH
182
5
HOH
HOH
613
A
HOH
10
5
HOH
HOH
504
B
HOH
13
5
HOH
HOH
505
B
HOH
17
5
HOH
HOH
506
B
HOH
18
5
HOH
HOH
507
B
HOH
20
5
HOH
HOH
508
B
HOH
22
5
HOH
HOH
509
B
HOH
25
5
HOH
HOH
510
B
HOH
28
5
HOH
HOH
511
B
HOH
33
5
HOH
HOH
512
B
HOH
35
5
HOH
HOH
513
B
HOH
39
5
HOH
HOH
514
B
HOH
44
5
HOH
HOH
515
B
HOH
45
5
HOH
HOH
516
B
HOH
49
5
HOH
HOH
517
B
HOH
53
5
HOH
HOH
518
B
HOH
54
5
HOH
HOH
519
B
HOH
55
5
HOH
HOH
520
B
HOH
56
5
HOH
HOH
521
B
HOH
57
5
HOH
HOH
522
B
HOH
58
5
HOH
HOH
523
B
HOH
60
5
HOH
HOH
524
B
HOH
61
5
HOH
HOH
525
B
HOH
65
5
HOH
HOH
526
B
HOH
66
5
HOH
HOH
527
B
HOH
68
5
HOH
HOH
528
B
HOH
71
5
HOH
HOH
529
B
HOH
72
5
HOH
HOH
530
B
HOH
74
5
HOH
HOH
531
B
HOH
75
5
HOH
HOH
532
B
HOH
78
5
HOH
HOH
533
B
HOH
81
5
HOH
HOH
534
B
HOH
82
5
HOH
HOH
535
B
HOH
84
5
HOH
HOH
536
B
HOH
86
5
HOH
HOH
537
B
HOH
88
5
HOH
HOH
538
B
HOH
90
5
HOH
HOH
539
B
HOH
92
5
HOH
HOH
540
B
HOH
93
5
HOH
HOH
541
B
HOH
95
5
HOH
HOH
542
B
HOH
96
5
HOH
HOH
543
B
HOH
97
5
HOH
HOH
544
B
HOH
102
5
HOH
HOH
545
B
HOH
104
5
HOH
HOH
546
B
HOH
110
5
HOH
HOH
547
B
HOH
111
5
HOH
HOH
548
B
HOH
116
5
HOH
HOH
549
B
HOH
117
5
HOH
HOH
550
B
HOH
119
5
HOH
HOH
551
B
HOH
120
5
HOH
HOH
552
B
HOH
122
5
HOH
HOH
553
B
HOH
123
5
HOH
HOH
554
B
HOH
124
5
HOH
HOH
555
B
HOH
130
5
HOH
HOH
556
B
HOH
131
5
HOH
HOH
557
B
HOH
132
5
HOH
HOH
558
B
HOH
135
5
HOH
HOH
559
B
HOH
137
5
HOH
HOH
560
B
HOH
142
5
HOH
HOH
561
B
HOH
143
5
HOH
HOH
562
B
HOH
145
5
HOH
HOH
563
B
HOH
154
5
HOH
HOH
564
B
HOH
155
5
HOH
HOH
565
B
HOH
156
5
HOH
HOH
566
B
HOH
158
5
HOH
HOH
567
B
HOH
159
5
HOH
HOH
568
B
HOH
160
5
HOH
HOH
569
B
HOH
161
5
HOH
HOH
570
B
HOH
166
5
HOH
HOH
571
B
HOH
169
5
HOH
HOH
572
B
HOH
170
5
HOH
HOH
573
B
HOH
180
5
HOH
HOH
574
B
HOH
183
5
HOH
HOH
575
B
HOH
184
5
HOH
HOH
576
B
n
1
-19
A
n
2
-18
A
n
3
-17
A
n
4
-16
A
n
5
-15
A
n
6
-14
A
n
7
-13
A
n
8
-12
A
n
9
-11
A
n
10
-10
A
n
11
-9
A
n
12
-8
A
n
13
-7
A
n
14
-6
A
n
15
-5
A
n
16
-4
A
n
17
-3
A
n
18
-2
A
n
19
-1
A
n
20
0
A
n
21
1
A
n
22
2
A
PRO
3
n
23
PRO
3
A
SER
4
n
24
SER
4
A
PRO
5
n
25
PRO
5
A
ALA
6
n
26
ALA
6
A
VAL
7
n
27
VAL
7
A
VAL
8
n
28
VAL
8
A
GLY
9
n
29
GLY
9
A
ARG
10
n
30
ARG
10
A
SER
11
n
31
SER
11
A
LEU
12
n
32
LEU
12
A
VAL
13
n
33
VAL
13
A
ASN
14
n
34
ASN
14
A
SER
15
n
35
SER
15
A
PHE
16
n
36
PHE
16
A
LYS
17
n
37
LYS
17
A
GLN
18
n
38
GLN
18
A
PHE
19
n
39
PHE
19
A
VAL
20
n
40
VAL
20
A
SER
21
n
41
SER
21
A
n
42
22
A
n
43
23
A
n
44
24
A
n
45
25
A
n
46
26
A
n
47
27
A
HIS
28
n
48
HIS
28
A
VAL
29
n
49
VAL
29
A
ASP
30
n
50
ASP
30
A
ALA
31
n
51
ALA
31
A
THR
32
n
52
THR
32
A
TYR
33
n
53
TYR
33
A
ARG
34
n
54
ARG
34
A
LEU
35
n
55
LEU
35
A
VAL
36
n
56
VAL
36
A
LEU
37
n
57
LEU
37
A
ASP
38
n
58
ASP
38
A
CYS
39
n
59
CYS
39
A
VAL
40
n
60
VAL
40
A
ALA
41
n
61
ALA
41
A
ALA
42
n
62
ALA
42
A
VAL
43
n
63
VAL
43
A
ASP
44
n
64
ASP
44
A
PRO
45
n
65
PRO
45
A
LEU
46
n
66
LEU
46
A
MET
47
n
67
MET
47
A
ARG
48
n
68
ARG
48
A
LEU
49
n
69
LEU
49
A
TYR
50
n
70
TYR
50
A
THR
51
n
71
THR
51
A
PHE
52
n
72
PHE
52
A
GLY
53
n
73
GLY
53
A
SER
54
n
74
SER
54
A
THR
55
n
75
THR
55
A
VAL
56
n
76
VAL
56
A
VAL
57
n
77
VAL
57
A
TYR
58
n
78
TYR
58
A
GLY
59
n
79
GLY
59
A
VAL
60
n
80
VAL
60
A
HIS
61
n
81
HIS
61
A
GLU
62
n
82
GLU
62
A
LYS
63
n
83
LYS
63
A
GLY
64
n
84
GLY
64
A
SER
65
n
85
SER
65
A
ASP
66
n
86
ASP
66
A
VAL
67
n
87
VAL
67
A
ASP
68
n
88
ASP
68
A
PHE
69
n
89
PHE
69
A
VAL
70
n
90
VAL
70
A
VAL
71
n
91
VAL
71
A
LEU
72
n
92
LEU
72
A
ASN
73
n
93
ASN
73
A
LYS
74
n
94
LYS
74
A
THR
75
n
95
THR
75
A
ASP
76
n
96
ASP
76
A
VAL
77
n
97
VAL
77
A
GLU
78
n
98
GLU
78
A
ASP
79
n
99
ASP
79
A
GLY
80
n
100
GLY
80
A
LYS
81
n
101
LYS
81
A
GLY
82
n
102
GLY
82
A
GLY
83
n
103
GLY
83
A
ASP
84
n
104
ASP
84
A
ALA
85
n
105
ALA
85
A
ALA
86
n
106
ALA
86
A
THR
87
n
107
THR
87
A
GLN
88
n
108
GLN
88
A
VAL
89
n
109
VAL
89
A
ALA
90
n
110
ALA
90
A
LYS
91
n
111
LYS
91
A
GLY
92
n
112
GLY
92
A
LEU
93
n
113
LEU
93
A
GLN
94
n
114
GLN
94
A
ALA
95
n
115
ALA
95
A
ASP
96
n
116
ASP
96
A
ILE
97
n
117
ILE
97
A
LEU
98
n
118
LEU
98
A
ALA
99
n
119
ALA
99
A
LYS
100
n
120
LYS
100
A
LEU
101
n
121
LEU
101
A
ALA
102
n
122
ALA
102
A
ARG
103
n
123
ARG
103
A
VAL
104
n
124
VAL
104
A
ILE
105
n
125
ILE
105
A
ARG
106
n
126
ARG
106
A
GLN
107
n
127
GLN
107
A
LYS
108
n
128
LYS
108
A
HIS
109
n
129
HIS
109
A
LEU
110
n
130
LEU
110
A
SER
111
n
131
SER
111
A
TRP
112
n
132
TRP
112
A
ASN
113
n
133
ASN
113
A
VAL
114
n
134
VAL
114
A
GLU
115
n
135
GLU
115
A
GLU
116
n
136
GLU
116
A
VAL
117
n
137
VAL
117
A
ARG
118
n
138
ARG
118
A
ARG
119
n
139
ARG
119
A
THR
120
n
140
THR
120
A
ARG
121
n
141
ARG
121
A
VAL
122
n
142
VAL
122
A
PRO
123
n
143
PRO
123
A
VAL
124
n
144
VAL
124
A
VAL
125
n
145
VAL
125
A
ARG
126
n
146
ARG
126
A
VAL
127
n
147
VAL
127
A
LYS
128
n
148
LYS
128
A
GLY
129
n
149
GLY
129
A
GLY
130
n
150
GLY
130
A
GLY
131
n
151
GLY
131
A
ALA
132
n
152
ALA
132
A
VAL
133
n
153
VAL
133
A
ASP
134
n
154
ASP
134
A
PHE
135
n
155
PHE
135
A
ASP
136
n
156
ASP
136
A
ILE
137
n
157
ILE
137
A
THR
138
n
158
THR
138
A
ALA
139
n
159
ALA
139
A
TYR
140
n
160
TYR
140
A
ARG
141
n
161
ARG
141
A
ARG
142
n
162
ARG
142
A
ASN
143
n
163
ASN
143
A
GLY
144
n
164
GLY
144
A
VAL
145
n
165
VAL
145
A
ARG
146
n
166
ARG
146
A
ASN
147
n
167
ASN
147
A
SER
148
n
168
SER
148
A
ALA
149
n
169
ALA
149
A
LEU
150
n
170
LEU
150
A
LEU
151
n
171
LEU
151
A
ARG
152
n
172
ARG
152
A
ALA
153
n
173
ALA
153
A
TYR
154
n
174
TYR
154
A
PHE
155
n
175
PHE
155
A
GLU
156
n
176
GLU
156
A
GLN
157
n
177
GLN
157
A
ASN
158
n
178
ASN
158
A
PRO
159
n
179
PRO
159
A
PRO
160
n
180
PRO
160
A
CYS
161
n
181
CYS
161
A
ARG
162
n
182
ARG
162
A
TRP
163
n
183
TRP
163
A
LEU
164
n
184
LEU
164
A
SER
165
n
185
SER
165
A
MET
166
n
186
MET
166
A
SER
167
n
187
SER
167
A
ILE
168
n
188
ILE
168
A
LYS
169
n
189
LYS
169
A
ARG
170
n
190
ARG
170
A
TRP
171
n
191
TRP
171
A
SER
172
n
192
SER
172
A
LYS
173
n
193
LYS
173
A
GLN
174
n
194
GLN
174
A
THR
175
n
195
THR
175
A
GLY
176
n
196
GLY
176
A
LEU
177
n
197
LEU
177
A
ASN
178
n
198
ASN
178
A
ALA
179
n
199
ALA
179
A
SER
180
n
200
SER
180
A
VAL
181
n
201
VAL
181
A
ILE
182
n
202
ILE
182
A
GLY
183
n
203
GLY
183
A
GLY
184
n
204
GLY
184
A
SER
185
n
205
SER
185
A
ILE
186
n
206
ILE
186
A
THR
187
n
207
THR
187
A
SER
188
n
208
SER
188
A
TYR
189
n
209
TYR
189
A
GLY
190
n
210
GLY
190
A
PHE
191
n
211
PHE
191
A
ASN
192
n
212
ASN
192
A
LEU
193
n
213
LEU
193
A
MET
194
n
214
MET
194
A
VAL
195
n
215
VAL
195
A
VAL
196
n
216
VAL
196
A
TYR
197
n
217
TYR
197
A
TYR
198
n
218
TYR
198
A
LEU
199
n
219
LEU
199
A
LEU
200
n
220
LEU
200
A
GLN
201
n
221
GLN
201
A
ARG
202
n
222
ARG
202
A
ASN
203
n
223
ASN
203
A
HIS
204
n
224
HIS
204
A
LEU
205
n
225
LEU
205
A
GLN
206
n
226
GLN
206
A
PHE
207
n
227
PHE
207
A
VAL
208
n
228
VAL
208
A
PRO
209
n
229
PRO
209
A
PRO
210
n
230
PRO
210
A
SER
211
n
231
SER
211
A
THR
212
n
232
THR
212
A
ILE
213
n
233
ILE
213
A
ASP
214
n
234
ASP
214
A
VAL
215
n
235
VAL
215
A
SER
216
n
236
SER
216
A
ARG
217
n
237
ARG
217
A
VAL
218
n
238
VAL
218
A
GLU
219
n
239
GLU
219
A
PRO
220
n
240
PRO
220
A
LEU
221
n
241
LEU
221
A
PRO
222
n
242
PRO
222
A
PRO
223
n
243
PRO
223
A
HIS
224
n
244
HIS
224
A
LEU
225
n
245
LEU
225
A
PRO
226
n
246
PRO
226
A
LEU
227
n
247
LEU
227
A
GLU
228
n
248
GLU
228
A
GLU
229
n
249
GLU
229
A
PRO
230
n
250
PRO
230
A
ALA
231
n
251
ALA
231
A
ASP
232
n
252
ASP
232
A
GLU
233
n
253
GLU
233
A
GLY
234
n
254
GLY
234
A
LEU
235
n
255
LEU
235
A
GLU
236
n
256
GLU
236
A
LEU
237
n
257
LEU
237
A
GLY
238
n
258
GLY
238
A
THR
239
n
259
THR
239
A
GLN
240
n
260
GLN
240
A
VAL
241
n
261
VAL
241
A
LEU
242
n
262
LEU
242
A
ASP
243
n
263
ASP
243
A
PHE
244
n
264
PHE
244
A
LEU
245
n
265
LEU
245
A
HIS
246
n
266
HIS
246
A
PHE
247
n
267
PHE
247
A
PHE
248
n
268
PHE
248
A
LEU
249
n
269
LEU
249
A
HIS
250
n
270
HIS
250
A
GLU
251
n
271
GLU
251
A
PHE
252
n
272
PHE
252
A
ASP
253
n
273
ASP
253
A
SER
254
n
274
SER
254
A
ASP
255
n
275
ASP
255
A
LYS
256
n
276
LYS
256
A
GLN
257
n
277
GLN
257
A
VAL
258
n
278
VAL
258
A
ILE
259
n
279
ILE
259
A
SER
260
n
280
SER
260
A
LEU
261
n
281
LEU
261
A
ASN
262
n
282
ASN
262
A
ARG
263
n
283
ARG
263
A
PRO
264
n
284
PRO
264
A
GLY
265
n
285
GLY
265
A
ILE
266
n
286
ILE
266
A
THR
267
n
287
THR
267
A
THR
268
n
288
THR
268
A
LYS
269
n
289
LYS
269
A
GLU
270
n
290
GLU
270
A
GLU
271
n
291
GLU
271
A
LEU
272
n
292
LEU
272
A
ASP
273
n
293
ASP
273
A
TRP
274
n
294
TRP
274
A
THR
275
n
295
THR
275
A
LYS
276
n
296
LYS
276
A
SER
277
n
297
SER
277
A
ALA
278
n
298
ALA
278
A
GLU
279
n
299
GLU
279
A
ASP
280
n
300
ASP
280
A
PHE
281
n
301
PHE
281
A
ALA
282
n
302
ALA
282
A
ARG
283
n
303
ARG
283
A
MET
284
n
304
MET
284
A
ASN
285
n
305
ASN
285
A
GLY
286
n
306
GLY
286
A
GLU
287
n
307
GLU
287
A
LYS
288
n
308
LYS
288
A
VAL
289
n
309
VAL
289
A
HIS
290
n
310
HIS
290
A
TYR
291
n
311
TYR
291
A
GLN
292
n
312
GLN
292
A
TRP
293
n
313
TRP
293
A
CYS
294
n
314
CYS
294
A
ILE
295
n
315
ILE
295
A
GLU
296
n
316
GLU
296
A
ASP
297
n
317
ASP
297
A
PRO
298
n
318
PRO
298
A
TYR
299
n
319
TYR
299
A
GLU
300
n
320
GLU
300
A
LEU
301
n
321
LEU
301
A
ASN
302
n
322
ASN
302
A
LEU
303
n
323
LEU
303
A
ASN
304
n
324
ASN
304
A
VAL
305
n
325
VAL
305
A
GLY
306
n
326
GLY
306
A
ARG
307
n
327
ARG
307
A
ASN
308
n
328
ASN
308
A
VAL
309
n
329
VAL
309
A
THR
310
n
330
THR
310
A
PRO
311
n
331
PRO
311
A
LEU
312
n
332
LEU
312
A
LYS
313
n
333
LYS
313
A
ARG
314
n
334
ARG
314
A
ASP
315
n
335
ASP
315
A
PHE
316
n
336
PHE
316
A
LEU
317
n
337
LEU
317
A
ARG
318
n
338
ARG
318
A
ARG
319
n
339
ARG
319
A
HIS
320
n
340
HIS
320
A
LEU
321
n
341
LEU
321
A
GLU
322
n
342
GLU
322
A
LYS
323
n
343
LYS
323
A
ALA
324
n
344
ALA
324
A
ARG
325
n
345
ARG
325
A
ASP
326
n
346
ASP
326
A
THR
327
n
347
THR
327
A
ALA
328
n
348
ALA
328
A
LEU
329
n
349
LEU
329
A
LEU
330
n
350
LEU
330
A
THR
331
n
351
THR
331
A
ILE
332
n
352
ILE
332
A
n
353
333
A
n
1
-19
B
n
2
-18
B
n
3
-17
B
n
4
-16
B
n
5
-15
B
n
6
-14
B
n
7
-13
B
n
8
-12
B
n
9
-11
B
n
10
-10
B
n
11
-9
B
n
12
-8
B
n
13
-7
B
n
14
-6
B
n
15
-5
B
n
16
-4
B
n
17
-3
B
n
18
-2
B
n
19
-1
B
n
20
0
B
n
21
1
B
n
22
2
B
PRO
3
n
23
PRO
3
B
SER
4
n
24
SER
4
B
PRO
5
n
25
PRO
5
B
ALA
6
n
26
ALA
6
B
VAL
7
n
27
VAL
7
B
VAL
8
n
28
VAL
8
B
GLY
9
n
29
GLY
9
B
ARG
10
n
30
ARG
10
B
SER
11
n
31
SER
11
B
LEU
12
n
32
LEU
12
B
VAL
13
n
33
VAL
13
B
ASN
14
n
34
ASN
14
B
SER
15
n
35
SER
15
B
PHE
16
n
36
PHE
16
B
LYS
17
n
37
LYS
17
B
GLN
18
n
38
GLN
18
B
PHE
19
n
39
PHE
19
B
VAL
20
n
40
VAL
20
B
SER
21
n
41
SER
21
B
LYS
22
n
42
LYS
22
B
ASP
23
n
43
ASP
23
B
LEU
24
n
44
LEU
24
B
HIS
25
n
45
HIS
25
B
THR
26
n
46
THR
26
B
ARG
27
n
47
ARG
27
B
HIS
28
n
48
HIS
28
B
VAL
29
n
49
VAL
29
B
ASP
30
n
50
ASP
30
B
ALA
31
n
51
ALA
31
B
THR
32
n
52
THR
32
B
TYR
33
n
53
TYR
33
B
ARG
34
n
54
ARG
34
B
LEU
35
n
55
LEU
35
B
VAL
36
n
56
VAL
36
B
LEU
37
n
57
LEU
37
B
ASP
38
n
58
ASP
38
B
CYS
39
n
59
CYS
39
B
VAL
40
n
60
VAL
40
B
ALA
41
n
61
ALA
41
B
ALA
42
n
62
ALA
42
B
VAL
43
n
63
VAL
43
B
ASP
44
n
64
ASP
44
B
n
65
45
B
n
66
46
B
MET
47
n
67
MET
47
B
ARG
48
n
68
ARG
48
B
LEU
49
n
69
LEU
49
B
TYR
50
n
70
TYR
50
B
THR
51
n
71
THR
51
B
PHE
52
n
72
PHE
52
B
GLY
53
n
73
GLY
53
B
SER
54
n
74
SER
54
B
THR
55
n
75
THR
55
B
VAL
56
n
76
VAL
56
B
VAL
57
n
77
VAL
57
B
TYR
58
n
78
TYR
58
B
GLY
59
n
79
GLY
59
B
VAL
60
n
80
VAL
60
B
HIS
61
n
81
HIS
61
B
GLU
62
n
82
GLU
62
B
LYS
63
n
83
LYS
63
B
GLY
64
n
84
GLY
64
B
SER
65
n
85
SER
65
B
ASP
66
n
86
ASP
66
B
VAL
67
n
87
VAL
67
B
ASP
68
n
88
ASP
68
B
PHE
69
n
89
PHE
69
B
VAL
70
n
90
VAL
70
B
VAL
71
n
91
VAL
71
B
LEU
72
n
92
LEU
72
B
ASN
73
n
93
ASN
73
B
LYS
74
n
94
LYS
74
B
THR
75
n
95
THR
75
B
ASP
76
n
96
ASP
76
B
VAL
77
n
97
VAL
77
B
GLU
78
n
98
GLU
78
B
ASP
79
n
99
ASP
79
B
GLY
80
n
100
GLY
80
B
LYS
81
n
101
LYS
81
B
n
102
82
B
n
103
83
B
n
104
84
B
n
105
85
B
n
106
86
B
n
107
87
B
n
108
88
B
n
109
89
B
ALA
90
n
110
ALA
90
B
LYS
91
n
111
LYS
91
B
GLY
92
n
112
GLY
92
B
LEU
93
n
113
LEU
93
B
GLN
94
n
114
GLN
94
B
ALA
95
n
115
ALA
95
B
ASP
96
n
116
ASP
96
B
ILE
97
n
117
ILE
97
B
LEU
98
n
118
LEU
98
B
ALA
99
n
119
ALA
99
B
LYS
100
n
120
LYS
100
B
LEU
101
n
121
LEU
101
B
ALA
102
n
122
ALA
102
B
ARG
103
n
123
ARG
103
B
VAL
104
n
124
VAL
104
B
ILE
105
n
125
ILE
105
B
ARG
106
n
126
ARG
106
B
GLN
107
n
127
GLN
107
B
LYS
108
n
128
LYS
108
B
HIS
109
n
129
HIS
109
B
LEU
110
n
130
LEU
110
B
SER
111
n
131
SER
111
B
TRP
112
n
132
TRP
112
B
ASN
113
n
133
ASN
113
B
VAL
114
n
134
VAL
114
B
GLU
115
n
135
GLU
115
B
GLU
116
n
136
GLU
116
B
VAL
117
n
137
VAL
117
B
ARG
118
n
138
ARG
118
B
n
139
119
B
n
140
120
B
n
141
121
B
VAL
122
n
142
VAL
122
B
PRO
123
n
143
PRO
123
B
VAL
124
n
144
VAL
124
B
VAL
125
n
145
VAL
125
B
ARG
126
n
146
ARG
126
B
VAL
127
n
147
VAL
127
B
LYS
128
n
148
LYS
128
B
GLY
129
n
149
GLY
129
B
GLY
130
n
150
GLY
130
B
GLY
131
n
151
GLY
131
B
ALA
132
n
152
ALA
132
B
VAL
133
n
153
VAL
133
B
ASP
134
n
154
ASP
134
B
PHE
135
n
155
PHE
135
B
ASP
136
n
156
ASP
136
B
ILE
137
n
157
ILE
137
B
THR
138
n
158
THR
138
B
ALA
139
n
159
ALA
139
B
TYR
140
n
160
TYR
140
B
ARG
141
n
161
ARG
141
B
ARG
142
n
162
ARG
142
B
ASN
143
n
163
ASN
143
B
GLY
144
n
164
GLY
144
B
VAL
145
n
165
VAL
145
B
ARG
146
n
166
ARG
146
B
ASN
147
n
167
ASN
147
B
SER
148
n
168
SER
148
B
ALA
149
n
169
ALA
149
B
LEU
150
n
170
LEU
150
B
LEU
151
n
171
LEU
151
B
ARG
152
n
172
ARG
152
B
ALA
153
n
173
ALA
153
B
TYR
154
n
174
TYR
154
B
PHE
155
n
175
PHE
155
B
GLU
156
n
176
GLU
156
B
GLN
157
n
177
GLN
157
B
ASN
158
n
178
ASN
158
B
PRO
159
n
179
PRO
159
B
PRO
160
n
180
PRO
160
B
CYS
161
n
181
CYS
161
B
ARG
162
n
182
ARG
162
B
TRP
163
n
183
TRP
163
B
LEU
164
n
184
LEU
164
B
SER
165
n
185
SER
165
B
MET
166
n
186
MET
166
B
SER
167
n
187
SER
167
B
ILE
168
n
188
ILE
168
B
LYS
169
n
189
LYS
169
B
ARG
170
n
190
ARG
170
B
TRP
171
n
191
TRP
171
B
SER
172
n
192
SER
172
B
LYS
173
n
193
LYS
173
B
GLN
174
n
194
GLN
174
B
THR
175
n
195
THR
175
B
GLY
176
n
196
GLY
176
B
LEU
177
n
197
LEU
177
B
ASN
178
n
198
ASN
178
B
ALA
179
n
199
ALA
179
B
SER
180
n
200
SER
180
B
VAL
181
n
201
VAL
181
B
ILE
182
n
202
ILE
182
B
GLY
183
n
203
GLY
183
B
GLY
184
n
204
GLY
184
B
SER
185
n
205
SER
185
B
ILE
186
n
206
ILE
186
B
THR
187
n
207
THR
187
B
SER
188
n
208
SER
188
B
TYR
189
n
209
TYR
189
B
GLY
190
n
210
GLY
190
B
PHE
191
n
211
PHE
191
B
ASN
192
n
212
ASN
192
B
LEU
193
n
213
LEU
193
B
MET
194
n
214
MET
194
B
VAL
195
n
215
VAL
195
B
VAL
196
n
216
VAL
196
B
TYR
197
n
217
TYR
197
B
TYR
198
n
218
TYR
198
B
LEU
199
n
219
LEU
199
B
LEU
200
n
220
LEU
200
B
GLN
201
n
221
GLN
201
B
ARG
202
n
222
ARG
202
B
ASN
203
n
223
ASN
203
B
HIS
204
n
224
HIS
204
B
LEU
205
n
225
LEU
205
B
GLN
206
n
226
GLN
206
B
PHE
207
n
227
PHE
207
B
VAL
208
n
228
VAL
208
B
PRO
209
n
229
PRO
209
B
PRO
210
n
230
PRO
210
B
SER
211
n
231
SER
211
B
THR
212
n
232
THR
212
B
ILE
213
n
233
ILE
213
B
ASP
214
n
234
ASP
214
B
VAL
215
n
235
VAL
215
B
SER
216
n
236
SER
216
B
ARG
217
n
237
ARG
217
B
VAL
218
n
238
VAL
218
B
GLU
219
n
239
GLU
219
B
PRO
220
n
240
PRO
220
B
LEU
221
n
241
LEU
221
B
PRO
222
n
242
PRO
222
B
PRO
223
n
243
PRO
223
B
HIS
224
n
244
HIS
224
B
LEU
225
n
245
LEU
225
B
PRO
226
n
246
PRO
226
B
LEU
227
n
247
LEU
227
B
GLU
228
n
248
GLU
228
B
GLU
229
n
249
GLU
229
B
PRO
230
n
250
PRO
230
B
ALA
231
n
251
ALA
231
B
ASP
232
n
252
ASP
232
B
GLU
233
n
253
GLU
233
B
GLY
234
n
254
GLY
234
B
LEU
235
n
255
LEU
235
B
GLU
236
n
256
GLU
236
B
LEU
237
n
257
LEU
237
B
GLY
238
n
258
GLY
238
B
THR
239
n
259
THR
239
B
GLN
240
n
260
GLN
240
B
VAL
241
n
261
VAL
241
B
LEU
242
n
262
LEU
242
B
ASP
243
n
263
ASP
243
B
PHE
244
n
264
PHE
244
B
LEU
245
n
265
LEU
245
B
HIS
246
n
266
HIS
246
B
PHE
247
n
267
PHE
247
B
PHE
248
n
268
PHE
248
B
LEU
249
n
269
LEU
249
B
HIS
250
n
270
HIS
250
B
GLU
251
n
271
GLU
251
B
PHE
252
n
272
PHE
252
B
ASP
253
n
273
ASP
253
B
SER
254
n
274
SER
254
B
ASP
255
n
275
ASP
255
B
LYS
256
n
276
LYS
256
B
GLN
257
n
277
GLN
257
B
VAL
258
n
278
VAL
258
B
ILE
259
n
279
ILE
259
B
SER
260
n
280
SER
260
B
LEU
261
n
281
LEU
261
B
ASN
262
n
282
ASN
262
B
ARG
263
n
283
ARG
263
B
PRO
264
n
284
PRO
264
B
GLY
265
n
285
GLY
265
B
ILE
266
n
286
ILE
266
B
THR
267
n
287
THR
267
B
THR
268
n
288
THR
268
B
LYS
269
n
289
LYS
269
B
GLU
270
n
290
GLU
270
B
GLU
271
n
291
GLU
271
B
LEU
272
n
292
LEU
272
B
ASP
273
n
293
ASP
273
B
TRP
274
n
294
TRP
274
B
THR
275
n
295
THR
275
B
LYS
276
n
296
LYS
276
B
SER
277
n
297
SER
277
B
ALA
278
n
298
ALA
278
B
GLU
279
n
299
GLU
279
B
ASP
280
n
300
ASP
280
B
PHE
281
n
301
PHE
281
B
ALA
282
n
302
ALA
282
B
ARG
283
n
303
ARG
283
B
MET
284
n
304
MET
284
B
ASN
285
n
305
ASN
285
B
GLY
286
n
306
GLY
286
B
GLU
287
n
307
GLU
287
B
LYS
288
n
308
LYS
288
B
VAL
289
n
309
VAL
289
B
HIS
290
n
310
HIS
290
B
TYR
291
n
311
TYR
291
B
GLN
292
n
312
GLN
292
B
TRP
293
n
313
TRP
293
B
CYS
294
n
314
CYS
294
B
ILE
295
n
315
ILE
295
B
GLU
296
n
316
GLU
296
B
ASP
297
n
317
ASP
297
B
PRO
298
n
318
PRO
298
B
TYR
299
n
319
TYR
299
B
GLU
300
n
320
GLU
300
B
LEU
301
n
321
LEU
301
B
ASN
302
n
322
ASN
302
B
LEU
303
n
323
LEU
303
B
ASN
304
n
324
ASN
304
B
VAL
305
n
325
VAL
305
B
GLY
306
n
326
GLY
306
B
ARG
307
n
327
ARG
307
B
ASN
308
n
328
ASN
308
B
VAL
309
n
329
VAL
309
B
THR
310
n
330
THR
310
B
PRO
311
n
331
PRO
311
B
LEU
312
n
332
LEU
312
B
LYS
313
n
333
LYS
313
B
ARG
314
n
334
ARG
314
B
ASP
315
n
335
ASP
315
B
PHE
316
n
336
PHE
316
B
LEU
317
n
337
LEU
317
B
ARG
318
n
338
ARG
318
B
ARG
319
n
339
ARG
319
B
HIS
320
n
340
HIS
320
B
LEU
321
n
341
LEU
321
B
GLU
322
n
342
GLU
322
B
LYS
323
n
343
LYS
323
B
ALA
324
n
344
ALA
324
B
ARG
325
n
345
ARG
325
B
ASP
326
n
346
ASP
326
B
THR
327
n
347
THR
327
B
ALA
328
n
348
ALA
328
B
LEU
329
n
349
LEU
329
B
LEU
330
n
350
LEU
330
B
THR
331
n
351
THR
331
B
ILE
332
n
352
ILE
332
B
VAL
333
n
353
VAL
333
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
A
ASP
66
A
OD2
ASP
86
1_555
A
MG
401
C
MG
MG
1_555
A
ASP
68
A
OD2
ASP
88
1_555
101.1
A
ASP
66
A
OD2
ASP
86
1_555
A
MG
401
C
MG
MG
1_555
A
UTP
501
E
O1B
UTP
1_555
133.1
A
ASP
68
A
OD2
ASP
88
1_555
A
MG
401
C
MG
MG
1_555
A
UTP
501
E
O1B
UTP
1_555
98.1
A
ASP
66
A
OD2
ASP
86
1_555
A
MG
401
C
MG
MG
1_555
A
UTP
501
E
O3G
UTP
1_555
76.4
A
ASP
68
A
OD2
ASP
88
1_555
A
MG
401
C
MG
MG
1_555
A
UTP
501
E
O3G
UTP
1_555
164.7
A
UTP
501
E
O1B
UTP
1_555
A
MG
401
C
MG
MG
1_555
A
UTP
501
E
O3G
UTP
1_555
74.0
A
ASP
66
A
OD2
ASP
86
1_555
A
MG
401
C
MG
MG
1_555
A
UTP
501
E
O1A
UTP
1_555
119.4
A
ASP
68
A
OD2
ASP
88
1_555
A
MG
401
C
MG
MG
1_555
A
UTP
501
E
O1A
UTP
1_555
118.7
A
UTP
501
E
O1B
UTP
1_555
A
MG
401
C
MG
MG
1_555
A
UTP
501
E
O1A
UTP
1_555
86.4
A
UTP
501
E
O3G
UTP
1_555
A
MG
401
C
MG
MG
1_555
A
UTP
501
E
O1A
UTP
1_555
74.6
A
ASP
66
A
OD2
ASP
86
1_555
A
MG
401
C
MG
MG
1_555
A
HOH
503
H
O
HOH
1_555
72.7
A
ASP
68
A
OD2
ASP
88
1_555
A
MG
401
C
MG
MG
1_555
A
HOH
503
H
O
HOH
1_555
90.2
A
UTP
501
E
O1B
UTP
1_555
A
MG
401
C
MG
MG
1_555
A
HOH
503
H
O
HOH
1_555
149.5
A
UTP
501
E
O3G
UTP
1_555
A
MG
401
C
MG
MG
1_555
A
HOH
503
H
O
HOH
1_555
103.2
A
UTP
501
E
O1A
UTP
1_555
A
MG
401
C
MG
MG
1_555
A
HOH
503
H
O
HOH
1_555
64.1
A
ASP
66
A
OD2
ASP
86
1_555
A
MG
401
C
MG
MG
1_555
A
HOH
574
H
O
HOH
1_555
68.4
A
ASP
68
A
OD2
ASP
88
1_555
A
MG
401
C
MG
MG
1_555
A
HOH
574
H
O
HOH
1_555
73.9
A
UTP
501
E
O1B
UTP
1_555
A
MG
401
C
MG
MG
1_555
A
HOH
574
H
O
HOH
1_555
76.8
A
UTP
501
E
O3G
UTP
1_555
A
MG
401
C
MG
MG
1_555
A
HOH
574
H
O
HOH
1_555
91.3
A
UTP
501
E
O1A
UTP
1_555
A
MG
401
C
MG
MG
1_555
A
HOH
574
H
O
HOH
1_555
160.6
A
HOH
503
H
O
HOH
1_555
A
MG
401
C
MG
MG
1_555
A
HOH
574
H
O
HOH
1_555
133.6
A
UTP
501
E
O1A
UTP
1_555
A
MG
402
D
MG
MG
1_555
A
U5P
502
F
O3'
U5P
1_555
101.7
A
UTP
501
E
O1A
UTP
1_555
A
MG
402
D
MG
MG
1_555
A
HOH
503
H
O
HOH
1_555
74.1
A
U5P
502
F
O3'
U5P
1_555
A
MG
402
D
MG
MG
1_555
A
HOH
503
H
O
HOH
1_555
63.7
A
UTP
501
E
O1A
UTP
1_555
A
MG
402
D
MG
MG
1_555
A
HOH
504
H
O
HOH
1_555
62.0
A
U5P
502
F
O3'
U5P
1_555
A
MG
402
D
MG
MG
1_555
A
HOH
504
H
O
HOH
1_555
163.6
A
HOH
503
H
O
HOH
1_555
A
MG
402
D
MG
MG
1_555
A
HOH
504
H
O
HOH
1_555
107.3
A
UTP
501
E
O1A
UTP
1_555
A
MG
402
D
MG
MG
1_555
A
HOH
603
H
O
HOH
1_555
130.0
A
U5P
502
F
O3'
U5P
1_555
A
MG
402
D
MG
MG
1_555
A
HOH
603
H
O
HOH
1_555
119.0
A
HOH
503
H
O
HOH
1_555
A
MG
402
D
MG
MG
1_555
A
HOH
603
H
O
HOH
1_555
148.7
A
HOH
504
H
O
HOH
1_555
A
MG
402
D
MG
MG
1_555
A
HOH
603
H
O
HOH
1_555
76.2
A
UTP
501
E
O1A
UTP
1_555
A
MG
402
D
MG
MG
1_555
A
HOH
604
H
O
HOH
1_555
78.0
A
U5P
502
F
O3'
U5P
1_555
A
MG
402
D
MG
MG
1_555
A
HOH
604
H
O
HOH
1_555
93.3
A
HOH
503
H
O
HOH
1_555
A
MG
402
D
MG
MG
1_555
A
HOH
604
H
O
HOH
1_555
138.5
A
HOH
504
H
O
HOH
1_555
A
MG
402
D
MG
MG
1_555
A
HOH
604
H
O
HOH
1_555
85.3
A
HOH
603
H
O
HOH
1_555
A
MG
402
D
MG
MG
1_555
A
HOH
604
H
O
HOH
1_555
72.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
50
A
N
TYR
70
A
O
VAL
70
A
O
VAL
90
A
N
PHE
69
A
N
PHE
89
A
O
ASP
136
A
O
ASP
156
A
O
PHE
135
A
O
PHE
155
A
N
VAL
127
A
N
VAL
147
A
O
LYS
128
A
O
LYS
148
A
N
ASN
113
A
N
ASN
133
A
O
THR
267
A
O
THR
287
A
N
VAL
258
A
N
VAL
278
A
N
ILE
259
A
N
ILE
279
A
O
GLU
296
A
O
GLU
316
B
N
ARG
48
B
N
ARG
68
B
O
LEU
72
B
O
LEU
92
B
N
VAL
67
B
N
VAL
87
B
O
ASP
136
B
O
ASP
156
B
O
ILE
137
B
O
ILE
157
B
N
VAL
125
B
N
VAL
145
B
O
LYS
128
B
O
LYS
148
B
N
ASN
113
B
N
ASN
133
B
N
VAL
258
B
N
VAL
278
B
O
THR
267
B
O
THR
287
1
A
MET
-19
A
MET
1
1
Y
1
A
GLY
-18
A
GLY
2
1
Y
1
A
SER
-17
A
SER
3
1
Y
1
A
SER
-16
A
SER
4
1
Y
1
A
HIS
-15
A
HIS
5
1
Y
1
A
HIS
-14
A
HIS
6
1
Y
1
A
HIS
-13
A
HIS
7
1
Y
1
A
HIS
-12
A
HIS
8
1
Y
1
A
HIS
-11
A
HIS
9
1
Y
1
A
HIS
-10
A
HIS
10
1
Y
1
A
SER
-9
A
SER
11
1
Y
1
A
SER
-8
A
SER
12
1
Y
1
A
GLY
-7
A
GLY
13
1
Y
1
A
LEU
-6
A
LEU
14
1
Y
1
A
VAL
-5
A
VAL
15
1
Y
1
A
PRO
-4
A
PRO
16
1
Y
1
A
ARG
-3
A
ARG
17
1
Y
1
A
GLY
-2
A
GLY
18
1
Y
1
A
SER
-1
A
SER
19
1
Y
1
A
HIS
0
A
HIS
20
1
Y
1
A
MET
1
A
MET
21
1
Y
1
A
PRO
2
A
PRO
22
1
Y
1
A
LYS
22
A
LYS
42
1
Y
1
A
ASP
23
A
ASP
43
1
Y
1
A
LEU
24
A
LEU
44
1
Y
1
A
HIS
25
A
HIS
45
1
Y
1
A
THR
26
A
THR
46
1
Y
1
A
ARG
27
A
ARG
47
1
Y
1
A
VAL
333
A
VAL
353
1
Y
1
B
MET
-19
B
MET
1
1
Y
1
B
GLY
-18
B
GLY
2
1
Y
1
B
SER
-17
B
SER
3
1
Y
1
B
SER
-16
B
SER
4
1
Y
1
B
HIS
-15
B
HIS
5
1
Y
1
B
HIS
-14
B
HIS
6
1
Y
1
B
HIS
-13
B
HIS
7
1
Y
1
B
HIS
-12
B
HIS
8
1
Y
1
B
HIS
-11
B
HIS
9
1
Y
1
B
HIS
-10
B
HIS
10
1
Y
1
B
SER
-9
B
SER
11
1
Y
1
B
SER
-8
B
SER
12
1
Y
1
B
GLY
-7
B
GLY
13
1
Y
1
B
LEU
-6
B
LEU
14
1
Y
1
B
VAL
-5
B
VAL
15
1
Y
1
B
PRO
-4
B
PRO
16
1
Y
1
B
ARG
-3
B
ARG
17
1
Y
1
B
GLY
-2
B
GLY
18
1
Y
1
B
SER
-1
B
SER
19
1
Y
1
B
HIS
0
B
HIS
20
1
Y
1
B
MET
1
B
MET
21
1
Y
1
B
PRO
2
B
PRO
22
1
Y
1
B
PRO
45
B
PRO
65
1
Y
1
B
LEU
46
B
LEU
66
1
Y
1
B
GLY
82
B
GLY
102
1
Y
1
B
GLY
83
B
GLY
103
1
Y
1
B
ASP
84
B
ASP
104
1
Y
1
B
ALA
85
B
ALA
105
1
Y
1
B
ALA
86
B
ALA
106
1
Y
1
B
THR
87
B
THR
107
1
Y
1
B
GLN
88
B
GLN
108
1
Y
1
B
VAL
89
B
VAL
109
1
Y
1
B
ARG
119
B
ARG
139
1
Y
1
B
THR
120
B
THR
140
1
Y
1
B
ARG
121
B
ARG
141
1
Y
1
A
A
O
O
LEU
HOH
329
553
2.11
1
A
ALA
132
37.15
30.61
1
A
SER
216
-59.59
6.44
1
A
HIS
224
-47.95
150.31
1
A
PRO
226
-35.17
121.05
1
A
TRP
274
-106.25
68.00
1
A
ARG
283
-170.34
136.74
1
B
VAL
36
-150.66
-9.93
1
B
ASP
79
-94.81
53.50
1
B
ASP
134
-69.23
82.13
1
B
ASN
158
-152.28
78.74
1
B
ASN
203
76.49
-0.10
1
B
ASP
232
-76.84
20.47
1
B
TRP
274
-103.10
56.41
1
B
TRP
293
-154.59
83.64
1
B
TYR
299
-130.38
-34.04
1
B
ASN
302
81.00
-3.38
1
B
ALA
328
32.61
64.64
41.465
0.020
0.000
-0.020
0.020
0.000
-0.040
0.934
0.885
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.293
0.223
0.226
2.400
38.980
1364
26486
5.100
93.800
12.733
0.289
test set taken from 2IKF
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.683
0.339
0.800
0.800
1.200
pdb entry 2IKF
MAXIMUM LIKELIHOOD
MASK
2.400
38.980
184
5389
73
0
5132
0.012
0.022
5318
1.553
1.971
7225
6.096
5.000
636
35.658
23.187
251
19.004
15.000
891
19.765
15.000
47
0.096
0.200
811
0.005
0.020
4004
0.224
0.200
2383
0.309
0.200
3555
0.171
0.200
263
0.234
0.200
63
0.133
0.200
9
0.654
1.500
3281
1.151
2.000
5180
1.436
3.000
2300
2.301
4.500
2045
0.362
0.289
2.462
101
1848
1949
20
92.500
2.400
41.920
2Q0F
26495
0.140
0.990
1
6.400
3.380
677
93.800
0.476
2.40
2.49
2.3
9127
2610
1.060
3.48
93.00
0.460
2.49
2.59
2.4
9091
2618
1.070
3.46
93.70
0.434
2.59
2.70
2.5
9005
2600
1.050
3.45
93.60
0.400
2.70
2.85
2.7
9081
2628
1.110
3.43
93.80
0.341
2.85
3.02
3.0
8951
2642
1.020
3.36
94.60
0.272
3.02
3.26
3.5
8879
2660
0.960
3.32
94.40
0.174
3.26
3.58
5.0
8516
2620
0.990
3.23
93.50
0.112
3.58
4.10
7.8
8380
2567
0.950
3.23
90.60
0.067
4.10
5.17
12.6
8741
2655
0.860
3.25
92.80
0.045
5.17
41.92
20.2
10431
2895
0.860
3.57
97.80
data scaling
Pflugrath, J.W.
jwp@RigakuMSC.com
Jun 24 2004
http://www.msc.com/protein/dtrek.html
d*TREK
package
9.2L
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
5.2.0005
data extraction
PDB
sw-help@rcsb.rutgers.edu
April. 3, 2006
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
2.000
data collection
Blu-Ice
Ice
data reduction
d*TREK
phasing
PHASER
Terminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UMP
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
A
SER
4
A
SER
24
HELX_P
A
PHE
16
A
PHE
36
1
1
13
A
VAL
29
A
VAL
49
HELX_P
A
ASP
44
A
ASP
64
1
2
16
A
GLY
53
A
GLY
73
HELX_P
A
GLY
59
A
GLY
79
1
3
7
A
ASN
73
A
ASN
93
HELX_P
A
ASP
79
A
ASP
99
1
4
7
A
THR
87
A
THR
107
HELX_P
A
HIS
109
A
HIS
129
1
5
23
A
ARG
142
A
ARG
162
HELX_P
A
ASN
158
A
ASN
178
1
6
17
A
PRO
160
A
PRO
180
HELX_P
A
THR
175
A
THR
195
1
7
16
A
THR
187
A
THR
207
HELX_P
A
ARG
202
A
ARG
222
1
8
16
A
PRO
209
A
PRO
229
HELX_P
A
ILE
213
A
ILE
233
5
9
5
A
ASP
214
A
ASP
234
HELX_P
A
VAL
218
A
VAL
238
5
10
5
A
GLY
234
A
GLY
254
HELX_P
A
GLU
251
A
GLU
271
1
11
18
A
THR
275
A
THR
295
HELX_P
A
ALA
282
A
ALA
302
1
12
8
A
THR
310
A
THR
330
HELX_P
A
ALA
324
A
ALA
344
1
13
15
B
SER
4
B
SER
24
HELX_P
B
ASN
14
B
ASN
34
1
14
11
B
PHE
16
B
PHE
36
HELX_P
B
LYS
22
B
LYS
42
1
15
7
B
THR
26
B
THR
46
HELX_P
B
ALA
42
B
ALA
62
1
16
17
B
GLY
53
B
GLY
73
HELX_P
B
GLY
59
B
GLY
79
1
17
7
B
ASN
73
B
ASN
93
HELX_P
B
GLU
78
B
GLU
98
1
18
6
B
GLN
94
B
GLN
114
HELX_P
B
LYS
100
B
LYS
120
1
19
7
B
LEU
101
B
LEU
121
HELX_P
B
HIS
109
B
HIS
129
1
20
9
B
ARG
142
B
ARG
162
HELX_P
B
ASN
158
B
ASN
178
1
21
17
B
CYS
161
B
CYS
181
HELX_P
B
GLY
176
B
GLY
196
1
22
16
B
THR
187
B
THR
207
HELX_P
B
ARG
202
B
ARG
222
1
23
16
B
PRO
209
B
PRO
229
HELX_P
B
ILE
213
B
ILE
233
5
24
5
B
GLY
234
B
GLY
254
HELX_P
B
GLU
251
B
GLU
271
1
25
18
B
GLU
270
B
GLU
290
HELX_P
B
ASP
273
B
ASP
293
5
26
4
B
THR
275
B
THR
295
HELX_P
B
ASN
285
B
ASN
305
1
27
11
B
THR
310
B
THR
330
HELX_P
B
THR
327
B
THR
347
1
28
18
metalc
2.549
A
ASP
66
A
OD2
ASP
86
1_555
A
MG
401
C
MG
MG
1_555
metalc
2.182
A
ASP
68
A
OD2
ASP
88
1_555
A
MG
401
C
MG
MG
1_555
metalc
2.106
A
MG
401
C
MG
MG
1_555
A
UTP
501
E
O1B
UTP
1_555
metalc
2.538
A
MG
401
C
MG
MG
1_555
A
UTP
501
E
O3G
UTP
1_555
metalc
2.847
A
MG
401
C
MG
MG
1_555
A
UTP
501
E
O1A
UTP
1_555
metalc
2.520
A
MG
401
C
MG
MG
1_555
A
HOH
503
H
O
HOH
1_555
metalc
2.422
A
MG
401
C
MG
MG
1_555
A
HOH
574
H
O
HOH
1_555
metalc
2.258
A
MG
402
D
MG
MG
1_555
A
UTP
501
E
O1A
UTP
1_555
metalc
2.572
A
MG
402
D
MG
MG
1_555
A
U5P
502
F
O3'
U5P
1_555
metalc
2.478
A
MG
402
D
MG
MG
1_555
A
HOH
503
H
O
HOH
1_555
metalc
2.609
A
MG
402
D
MG
MG
1_555
A
HOH
504
H
O
HOH
1_555
metalc
2.742
A
MG
402
D
MG
MG
1_555
A
HOH
603
H
O
HOH
1_555
metalc
2.285
A
MG
402
D
MG
MG
1_555
A
HOH
604
H
O
HOH
1_555
TRANSFERASE
TUTase, Trypanosoma, nucleotidyltransferase, UTP-binding, RNA-editing, TRANSFERASE
Q381M1_9TRYP
UNP
1
1
Q381M1
MPPSPAVVGRSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDG
KGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKGGGAVDFDITAYRRNGVRNSALLRAYFEQNPP
CRWLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQ
VLDFLHFFLHEFDSDKQVISLNRPGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRH
LEKARDTALLTIV
1
333
2Q0F
1
333
Q381M1
A
1
21
353
1
333
2Q0F
1
333
Q381M1
B
1
21
353
1
cloning artifact
MET
-19
2Q0F
A
Q381M1
UNP
1
1
cloning artifact
GLY
-18
2Q0F
A
Q381M1
UNP
2
1
cloning artifact
SER
-17
2Q0F
A
Q381M1
UNP
3
1
cloning artifact
SER
-16
2Q0F
A
Q381M1
UNP
4
1
expression tag
HIS
-15
2Q0F
A
Q381M1
UNP
5
1
expression tag
HIS
-14
2Q0F
A
Q381M1
UNP
6
1
expression tag
HIS
-13
2Q0F
A
Q381M1
UNP
7
1
expression tag
HIS
-12
2Q0F
A
Q381M1
UNP
8
1
expression tag
HIS
-11
2Q0F
A
Q381M1
UNP
9
1
expression tag
HIS
-10
2Q0F
A
Q381M1
UNP
10
1
cloning artifact
SER
-9
2Q0F
A
Q381M1
UNP
11
1
cloning artifact
SER
-8
2Q0F
A
Q381M1
UNP
12
1
cloning artifact
GLY
-7
2Q0F
A
Q381M1
UNP
13
1
cloning artifact
LEU
-6
2Q0F
A
Q381M1
UNP
14
1
cloning artifact
VAL
-5
2Q0F
A
Q381M1
UNP
15
1
cloning artifact
PRO
-4
2Q0F
A
Q381M1
UNP
16
1
cloning artifact
ARG
-3
2Q0F
A
Q381M1
UNP
17
1
cloning artifact
GLY
-2
2Q0F
A
Q381M1
UNP
18
1
cloning artifact
SER
-1
2Q0F
A
Q381M1
UNP
19
1
cloning artifact
HIS
0
2Q0F
A
Q381M1
UNP
20
2
cloning artifact
MET
-19
2Q0F
B
Q381M1
UNP
1
2
cloning artifact
GLY
-18
2Q0F
B
Q381M1
UNP
2
2
cloning artifact
SER
-17
2Q0F
B
Q381M1
UNP
3
2
cloning artifact
SER
-16
2Q0F
B
Q381M1
UNP
4
2
expression tag
HIS
-15
2Q0F
B
Q381M1
UNP
5
2
expression tag
HIS
-14
2Q0F
B
Q381M1
UNP
6
2
expression tag
HIS
-13
2Q0F
B
Q381M1
UNP
7
2
expression tag
HIS
-12
2Q0F
B
Q381M1
UNP
8
2
expression tag
HIS
-11
2Q0F
B
Q381M1
UNP
9
2
expression tag
HIS
-10
2Q0F
B
Q381M1
UNP
10
2
cloning artifact
SER
-9
2Q0F
B
Q381M1
UNP
11
2
cloning artifact
SER
-8
2Q0F
B
Q381M1
UNP
12
2
cloning artifact
GLY
-7
2Q0F
B
Q381M1
UNP
13
2
cloning artifact
LEU
-6
2Q0F
B
Q381M1
UNP
14
2
cloning artifact
VAL
-5
2Q0F
B
Q381M1
UNP
15
2
cloning artifact
PRO
-4
2Q0F
B
Q381M1
UNP
16
2
cloning artifact
ARG
-3
2Q0F
B
Q381M1
UNP
17
2
cloning artifact
GLY
-2
2Q0F
B
Q381M1
UNP
18
2
cloning artifact
SER
-1
2Q0F
B
Q381M1
UNP
19
2
cloning artifact
HIS
0
2Q0F
B
Q381M1
UNP
20
5
3
5
2
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
48
A
ARG
68
A
PHE
52
A
PHE
72
A
VAL
67
A
VAL
87
A
LEU
72
A
LEU
92
A
ASP
134
A
ASP
154
A
ALA
139
A
ALA
159
A
VAL
124
A
VAL
144
A
LYS
128
A
LYS
148
A
ASN
113
A
ASN
133
A
VAL
117
A
VAL
137
A
THR
267
A
THR
287
A
THR
268
A
THR
288
A
GLN
257
A
GLN
277
A
SER
260
A
SER
280
A
ILE
295
A
ILE
315
A
GLU
296
A
GLU
316
B
ARG
48
B
ARG
68
B
PHE
52
B
PHE
72
B
VAL
67
B
VAL
87
B
LEU
72
B
LEU
92
B
PHE
135
B
PHE
155
B
ALA
139
B
ALA
159
B
VAL
124
B
VAL
144
B
LYS
128
B
LYS
148
B
ASN
113
B
ASN
133
B
GLU
116
B
GLU
136
B
GLN
257
B
GLN
277
B
VAL
258
B
VAL
278
B
THR
267
B
THR
287
B
THR
268
B
THR
288
BINDING SITE FOR RESIDUE MG A 401
A
MG
401
Software
5
BINDING SITE FOR RESIDUE MG A 402
A
MG
402
Software
6
BINDING SITE FOR RESIDUE UTP A 501
A
UTP
501
Software
24
BINDING SITE FOR RESIDUE U5P A 502
A
U5P
502
Software
15
BINDING SITE FOR RESIDUE U5P B 503
B
U5P
503
Software
11
A
ASP
66
A
ASP
86
5
1_555
A
ASP
68
A
ASP
88
5
1_555
A
UTP
501
E
UTP
5
1_555
A
HOH
503
H
HOH
5
1_555
A
HOH
574
H
HOH
5
1_555
A
UTP
501
E
UTP
6
1_555
A
U5P
502
F
U5P
6
1_555
A
HOH
503
H
HOH
6
1_555
A
HOH
504
H
HOH
6
1_555
A
HOH
603
H
HOH
6
1_555
A
HOH
604
H
HOH
6
1_555
A
PHE
52
A
PHE
72
24
1_555
A
GLY
53
A
GLY
73
24
1_555
A
SER
54
A
SER
74
24
1_555
A
SER
65
A
SER
85
24
1_555
A
ASP
66
A
ASP
86
24
1_555
A
ASP
68
A
ASP
88
24
1_555
A
GLY
144
A
GLY
164
24
1_555
A
ASN
147
A
ASN
167
24
1_555
A
SER
148
A
SER
168
24
1_555
A
LYS
169
A
LYS
189
24
1_555
A
LYS
173
A
LYS
193
24
1_555
A
SER
188
A
SER
208
24
1_555
A
TYR
189
A
TYR
209
24
1_555
A
MG
401
C
MG
24
1_555
A
MG
402
D
MG
24
1_555
A
U5P
502
F
U5P
24
1_555
A
HOH
503
H
HOH
24
1_555
A
HOH
504
H
HOH
24
1_555
A
HOH
516
H
HOH
24
1_555
A
HOH
535
H
HOH
24
1_555
A
HOH
574
H
HOH
24
1_555
A
HOH
578
H
HOH
24
1_555
A
HOH
580
H
HOH
24
1_555
A
HOH
604
H
HOH
24
1_555
A
PHE
52
A
PHE
72
15
1_555
A
ASP
68
A
ASP
88
15
1_555
A
ARG
121
A
ARG
141
15
1_555
A
VAL
122
A
VAL
142
15
1_555
A
ARG
126
A
ARG
146
15
1_555
A
ASP
136
A
ASP
156
15
1_555
A
MG
402
D
MG
15
1_555
A
UTP
501
E
UTP
15
1_555
A
HOH
503
H
HOH
15
1_555
A
HOH
508
H
HOH
15
1_555
A
HOH
559
H
HOH
15
1_555
A
HOH
577
H
HOH
15
1_555
A
HOH
578
H
HOH
15
1_555
A
HOH
603
H
HOH
15
1_555
A
HOH
604
H
HOH
15
1_555
B
GLY
53
B
GLY
73
11
1_555
B
SER
54
B
SER
74
11
1_555
B
ASP
68
B
ASP
88
11
1_555
B
LEU
151
B
LEU
171
11
1_555
B
LYS
173
B
LYS
193
11
1_555
B
SER
188
B
SER
208
11
1_555
B
ASN
192
B
ASN
212
11
1_555
B
HOH
504
I
HOH
11
1_555
B
HOH
528
I
HOH
11
1_555
B
HOH
554
I
HOH
11
1_555
B
HOH
565
I
HOH
11
1_555
4
P 1 21 1