0.015741
0.000000
0.000000
0.000000
0.015741
0.000000
0.000000
0.000000
0.006933
0.00000
0.00000
0.00000
Grigg, J.C.
Murphy, M.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
63.527
63.527
144.247
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H32 Fe N4 O4
616.487
PROTOPORPHYRIN IX CONTAINING FE
HEME
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
282
28815
28822
10.1074/jbc.M704602200
17666394
Heme Coordination by Staphylococcus aureus IsdE.
2007
77
1
Flat mirror (vertical focusing), single crystal Si(111) bent monochromator (horizontal focusing)
CCD
2007-02-19
MARMOSAIC 325 mm CCD
Side scattering bent cube-root I-beam single crystal, asymmetric cut 4.965 degs
SINGLE WAVELENGTH
M
x-ray
1
0.978894
1.0
BL11-1
SSRL
0.978894
SYNCHROTRON
SSRL BEAMLINE BL11-1
30112.441
Iron-regulated surface determinant E
1
man
polymer
616.487
PROTOPORPHYRIN IX CONTAINING FE
1
syn
non-polymer
18.015
water
183
nat
water
no
yes
GSGEFRIVPTTVALT(MSE)TLDKLDLPIVGKPTSYKTLPNRYKDVPEIGQP(MSE)EPNVEAVKKLKPTHVLSVSTIKD
E(MSE)QPFYKQLN(MSE)KGYFYDFDSLKG(MSE)QKSITQLGDQFNRKAQAKELNDHLNSVKQKIENKAAKQKKHPKV
LIL(MSE)GVPGSYLVATDKSYIGDLVKIAGGENVIKVKDRQYISSNTENLLNINPDIILRLPHG(MSE)PEEVKK
(MSE)FQKEFKQNDIWKHFKAVKNNHVYDLEEVPFGITANVDADKA(MSE)TQLYDLFYK
GSGEFRIVPTTVALTMTLDKLDLPIVGKPTSYKTLPNRYKDVPEIGQPMEPNVEAVKKLKPTHVLSVSTIKDEMQPFYKQ
LNMKGYFYDFDSLKGMQKSITQLGDQFNRKAQAKELNDHLNSVKQKIENKAAKQKKHPKVLILMGVPGSYLVATDKSYIG
DLVKIAGGENVIKVKDRQYISSNTENLLNINPDIILRLPHGMPEEVKKMFQKEFKQNDIWKHFKAVKNNHVYDLEEVPFG
ITANVDADKAMTQLYDLFYK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Staphylococcus
Staphylococcus aureus
N315
Escherichia
Escherichia coli
sample
isdE
158879
Staphylococcus aureus subsp. aureus
511693
Escherichia coli BL21
BL21
plasmid
pET28a
1
2.42
49.19
VAPOR DIFFUSION, HANGING DROP
5.5
50 mM MES, 0.2 M ammonuim acetate, 28% PEG 4000, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
294
software
repository
Initial release
Advisory
Source and taxonomy
Version format compliance
Refinement description
1
0
2007-07-31
1
1
2011-07-13
1
2
2017-10-18
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
RCSB
Y
RCSB
2007-06-11
REL
REL
HEM
PROTOPORPHYRIN IX CONTAINING FE
HOH
water
HEM
300
2
HEM
HEM
300
A
HOH
1
3
HOH
HOH
301
A
HOH
2
3
HOH
HOH
302
A
HOH
3
3
HOH
HOH
303
A
HOH
4
3
HOH
HOH
304
A
HOH
5
3
HOH
HOH
305
A
HOH
6
3
HOH
HOH
306
A
HOH
7
3
HOH
HOH
307
A
HOH
8
3
HOH
HOH
308
A
HOH
9
3
HOH
HOH
309
A
HOH
10
3
HOH
HOH
310
A
HOH
11
3
HOH
HOH
311
A
HOH
12
3
HOH
HOH
312
A
HOH
13
3
HOH
HOH
313
A
HOH
14
3
HOH
HOH
314
A
HOH
15
3
HOH
HOH
315
A
HOH
16
3
HOH
HOH
316
A
HOH
17
3
HOH
HOH
317
A
HOH
18
3
HOH
HOH
318
A
HOH
19
3
HOH
HOH
319
A
HOH
20
3
HOH
HOH
320
A
HOH
21
3
HOH
HOH
321
A
HOH
22
3
HOH
HOH
322
A
HOH
23
3
HOH
HOH
323
A
HOH
24
3
HOH
HOH
324
A
HOH
25
3
HOH
HOH
325
A
HOH
26
3
HOH
HOH
326
A
HOH
27
3
HOH
HOH
327
A
HOH
28
3
HOH
HOH
328
A
HOH
29
3
HOH
HOH
329
A
HOH
30
3
HOH
HOH
330
A
HOH
31
3
HOH
HOH
331
A
HOH
32
3
HOH
HOH
332
A
HOH
33
3
HOH
HOH
333
A
HOH
34
3
HOH
HOH
334
A
HOH
35
3
HOH
HOH
335
A
HOH
36
3
HOH
HOH
336
A
HOH
37
3
HOH
HOH
337
A
HOH
38
3
HOH
HOH
338
A
HOH
39
3
HOH
HOH
339
A
HOH
40
3
HOH
HOH
340
A
HOH
41
3
HOH
HOH
341
A
HOH
42
3
HOH
HOH
342
A
HOH
43
3
HOH
HOH
343
A
HOH
44
3
HOH
HOH
344
A
HOH
45
3
HOH
HOH
345
A
HOH
46
3
HOH
HOH
346
A
HOH
47
3
HOH
HOH
347
A
HOH
48
3
HOH
HOH
348
A
HOH
49
3
HOH
HOH
349
A
HOH
50
3
HOH
HOH
350
A
HOH
51
3
HOH
HOH
351
A
HOH
52
3
HOH
HOH
352
A
HOH
53
3
HOH
HOH
353
A
HOH
54
3
HOH
HOH
354
A
HOH
55
3
HOH
HOH
355
A
HOH
56
3
HOH
HOH
356
A
HOH
57
3
HOH
HOH
357
A
HOH
58
3
HOH
HOH
358
A
HOH
59
3
HOH
HOH
359
A
HOH
60
3
HOH
HOH
360
A
HOH
61
3
HOH
HOH
361
A
HOH
62
3
HOH
HOH
362
A
HOH
63
3
HOH
HOH
363
A
HOH
64
3
HOH
HOH
364
A
HOH
65
3
HOH
HOH
365
A
HOH
66
3
HOH
HOH
366
A
HOH
67
3
HOH
HOH
367
A
HOH
68
3
HOH
HOH
368
A
HOH
69
3
HOH
HOH
369
A
HOH
70
3
HOH
HOH
370
A
HOH
71
3
HOH
HOH
371
A
HOH
72
3
HOH
HOH
372
A
HOH
73
3
HOH
HOH
373
A
HOH
74
3
HOH
HOH
374
A
HOH
75
3
HOH
HOH
375
A
HOH
76
3
HOH
HOH
376
A
HOH
77
3
HOH
HOH
377
A
HOH
78
3
HOH
HOH
378
A
HOH
79
3
HOH
HOH
379
A
HOH
80
3
HOH
HOH
380
A
HOH
81
3
HOH
HOH
381
A
HOH
82
3
HOH
HOH
382
A
HOH
83
3
HOH
HOH
383
A
HOH
84
3
HOH
HOH
384
A
HOH
85
3
HOH
HOH
385
A
HOH
86
3
HOH
HOH
386
A
HOH
87
3
HOH
HOH
387
A
HOH
88
3
HOH
HOH
388
A
HOH
89
3
HOH
HOH
389
A
HOH
90
3
HOH
HOH
390
A
HOH
91
3
HOH
HOH
391
A
HOH
92
3
HOH
HOH
392
A
HOH
93
3
HOH
HOH
393
A
HOH
94
3
HOH
HOH
394
A
HOH
95
3
HOH
HOH
395
A
HOH
96
3
HOH
HOH
396
A
HOH
97
3
HOH
HOH
397
A
HOH
98
3
HOH
HOH
398
A
HOH
99
3
HOH
HOH
399
A
HOH
100
3
HOH
HOH
400
A
HOH
101
3
HOH
HOH
401
A
HOH
102
3
HOH
HOH
402
A
HOH
103
3
HOH
HOH
403
A
HOH
104
3
HOH
HOH
404
A
HOH
105
3
HOH
HOH
405
A
HOH
106
3
HOH
HOH
406
A
HOH
107
3
HOH
HOH
407
A
HOH
108
3
HOH
HOH
408
A
HOH
109
3
HOH
HOH
409
A
HOH
110
3
HOH
HOH
410
A
HOH
111
3
HOH
HOH
411
A
HOH
112
3
HOH
HOH
412
A
HOH
113
3
HOH
HOH
413
A
HOH
114
3
HOH
HOH
414
A
HOH
115
3
HOH
HOH
415
A
HOH
116
3
HOH
HOH
416
A
HOH
117
3
HOH
HOH
417
A
HOH
118
3
HOH
HOH
418
A
HOH
119
3
HOH
HOH
419
A
HOH
120
3
HOH
HOH
420
A
HOH
121
3
HOH
HOH
421
A
HOH
122
3
HOH
HOH
422
A
HOH
123
3
HOH
HOH
423
A
HOH
124
3
HOH
HOH
424
A
HOH
125
3
HOH
HOH
425
A
HOH
126
3
HOH
HOH
426
A
HOH
127
3
HOH
HOH
427
A
HOH
128
3
HOH
HOH
428
A
HOH
129
3
HOH
HOH
429
A
HOH
130
3
HOH
HOH
430
A
HOH
131
3
HOH
HOH
431
A
HOH
132
3
HOH
HOH
432
A
HOH
133
3
HOH
HOH
433
A
HOH
134
3
HOH
HOH
434
A
HOH
135
3
HOH
HOH
435
A
HOH
136
3
HOH
HOH
436
A
HOH
137
3
HOH
HOH
437
A
HOH
138
3
HOH
HOH
438
A
HOH
139
3
HOH
HOH
439
A
HOH
140
3
HOH
HOH
440
A
HOH
141
3
HOH
HOH
441
A
HOH
142
3
HOH
HOH
442
A
HOH
143
3
HOH
HOH
443
A
HOH
144
3
HOH
HOH
444
A
HOH
145
3
HOH
HOH
445
A
HOH
146
3
HOH
HOH
446
A
HOH
147
3
HOH
HOH
447
A
HOH
148
3
HOH
HOH
448
A
HOH
149
3
HOH
HOH
449
A
HOH
150
3
HOH
HOH
450
A
HOH
151
3
HOH
HOH
451
A
HOH
152
3
HOH
HOH
452
A
HOH
153
3
HOH
HOH
453
A
HOH
154
3
HOH
HOH
454
A
HOH
155
3
HOH
HOH
455
A
HOH
156
3
HOH
HOH
456
A
HOH
157
3
HOH
HOH
457
A
HOH
158
3
HOH
HOH
458
A
HOH
159
3
HOH
HOH
459
A
HOH
160
3
HOH
HOH
460
A
HOH
161
3
HOH
HOH
461
A
HOH
162
3
HOH
HOH
462
A
HOH
163
3
HOH
HOH
463
A
HOH
164
3
HOH
HOH
464
A
HOH
165
3
HOH
HOH
465
A
HOH
166
3
HOH
HOH
466
A
HOH
167
3
HOH
HOH
467
A
HOH
168
3
HOH
HOH
468
A
HOH
169
3
HOH
HOH
469
A
HOH
170
3
HOH
HOH
470
A
HOH
171
3
HOH
HOH
471
A
HOH
172
3
HOH
HOH
472
A
HOH
173
3
HOH
HOH
473
A
HOH
174
3
HOH
HOH
474
A
HOH
175
3
HOH
HOH
475
A
HOH
176
3
HOH
HOH
476
A
HOH
178
3
HOH
HOH
477
A
HOH
179
3
HOH
HOH
478
A
HOH
180
3
HOH
HOH
479
A
HOH
181
3
HOH
HOH
480
A
HOH
182
3
HOH
HOH
481
A
HOH
183
3
HOH
HOH
482
A
HOH
184
3
HOH
HOH
483
A
24.103
4.210
10.179
SE
34.9
0.87
50.495
28.545
8.208
SE
35.6
0.75
26.582
12.408
6.436
SE
36.5
0.88
52.737
19.219
12.642
SE
32.3
0.72
14.488
3.953
11.834
SE
34.3
0.63
53.079
35.809
9.737
SE
38.4
0.58
49.006
13.867
3.957
SE
60.0
0.74
51.979
47.904
14.533
SE
53.1
0.76
41.401
23.386
6.734
SE
53.7
0.51
0.430
1110
0.460
1565
0.440
1891
0.420
2104
0.400
2183
0.370
2170
0.290
2265
0.210
2406
0.620
0.640
0.550
15694
12992
2702
0.910
0.940
0.850
674
437
237
0.920
0.940
0.830
2457
1879
578
0.820
0.860
0.680
2952
2412
540
0.640
0.670
0.480
2735
2309
426
0.460
0.490
0.300
4287
3689
598
0.290
0.300
0.200
2589
2266
323
n
1
30
A
n
2
31
A
GLY
32
n
3
GLY
32
A
GLU
33
n
4
GLU
33
A
PHE
34
n
5
PHE
34
A
ARG
35
n
6
ARG
35
A
ILE
36
n
7
ILE
36
A
VAL
37
n
8
VAL
37
A
PRO
38
n
9
PRO
38
A
THR
39
n
10
THR
39
A
THR
40
n
11
THR
40
A
VAL
41
n
12
VAL
41
A
ALA
42
n
13
ALA
42
A
LEU
43
n
14
LEU
43
A
THR
44
n
15
THR
44
A
MSE
45
n
16
MSE
45
A
THR
46
n
17
THR
46
A
LEU
47
n
18
LEU
47
A
ASP
48
n
19
ASP
48
A
LYS
49
n
20
LYS
49
A
LEU
50
n
21
LEU
50
A
ASP
51
n
22
ASP
51
A
LEU
52
n
23
LEU
52
A
PRO
53
n
24
PRO
53
A
ILE
54
n
25
ILE
54
A
VAL
55
n
26
VAL
55
A
GLY
56
n
27
GLY
56
A
LYS
57
n
28
LYS
57
A
PRO
58
n
29
PRO
58
A
THR
59
n
30
THR
59
A
SER
60
n
31
SER
60
A
TYR
61
n
32
TYR
61
A
LYS
62
n
33
LYS
62
A
THR
63
n
34
THR
63
A
LEU
64
n
35
LEU
64
A
PRO
65
n
36
PRO
65
A
ASN
66
n
37
ASN
66
A
ARG
67
n
38
ARG
67
A
TYR
68
n
39
TYR
68
A
LYS
69
n
40
LYS
69
A
ASP
70
n
41
ASP
70
A
VAL
71
n
42
VAL
71
A
PRO
72
n
43
PRO
72
A
GLU
73
n
44
GLU
73
A
ILE
74
n
45
ILE
74
A
GLY
75
n
46
GLY
75
A
GLN
76
n
47
GLN
76
A
PRO
77
n
48
PRO
77
A
MSE
78
n
49
MSE
78
A
GLU
79
n
50
GLU
79
A
PRO
80
n
51
PRO
80
A
ASN
81
n
52
ASN
81
A
VAL
82
n
53
VAL
82
A
GLU
83
n
54
GLU
83
A
ALA
84
n
55
ALA
84
A
VAL
85
n
56
VAL
85
A
LYS
86
n
57
LYS
86
A
LYS
87
n
58
LYS
87
A
LEU
88
n
59
LEU
88
A
LYS
89
n
60
LYS
89
A
PRO
90
n
61
PRO
90
A
THR
91
n
62
THR
91
A
HIS
92
n
63
HIS
92
A
VAL
93
n
64
VAL
93
A
LEU
94
n
65
LEU
94
A
SER
95
n
66
SER
95
A
VAL
96
n
67
VAL
96
A
SER
97
n
68
SER
97
A
THR
98
n
69
THR
98
A
ILE
99
n
70
ILE
99
A
LYS
100
n
71
LYS
100
A
ASP
101
n
72
ASP
101
A
GLU
102
n
73
GLU
102
A
MSE
103
n
74
MSE
103
A
GLN
104
n
75
GLN
104
A
PRO
105
n
76
PRO
105
A
PHE
106
n
77
PHE
106
A
TYR
107
n
78
TYR
107
A
LYS
108
n
79
LYS
108
A
GLN
109
n
80
GLN
109
A
LEU
110
n
81
LEU
110
A
ASN
111
n
82
ASN
111
A
MSE
112
n
83
MSE
112
A
LYS
113
n
84
LYS
113
A
GLY
114
n
85
GLY
114
A
TYR
115
n
86
TYR
115
A
PHE
116
n
87
PHE
116
A
TYR
117
n
88
TYR
117
A
ASP
118
n
89
ASP
118
A
PHE
119
n
90
PHE
119
A
ASP
120
n
91
ASP
120
A
SER
121
n
92
SER
121
A
LEU
122
n
93
LEU
122
A
LYS
123
n
94
LYS
123
A
GLY
124
n
95
GLY
124
A
MSE
125
n
96
MSE
125
A
GLN
126
n
97
GLN
126
A
LYS
127
n
98
LYS
127
A
SER
128
n
99
SER
128
A
ILE
129
n
100
ILE
129
A
THR
130
n
101
THR
130
A
GLN
131
n
102
GLN
131
A
LEU
132
n
103
LEU
132
A
GLY
133
n
104
GLY
133
A
ASP
134
n
105
ASP
134
A
GLN
135
n
106
GLN
135
A
PHE
136
n
107
PHE
136
A
ASN
137
n
108
ASN
137
A
ARG
138
n
109
ARG
138
A
LYS
139
n
110
LYS
139
A
ALA
140
n
111
ALA
140
A
GLN
141
n
112
GLN
141
A
ALA
142
n
113
ALA
142
A
LYS
143
n
114
LYS
143
A
GLU
144
n
115
GLU
144
A
LEU
145
n
116
LEU
145
A
ASN
146
n
117
ASN
146
A
ASP
147
n
118
ASP
147
A
HIS
148
n
119
HIS
148
A
LEU
149
n
120
LEU
149
A
ASN
150
n
121
ASN
150
A
SER
151
n
122
SER
151
A
VAL
152
n
123
VAL
152
A
LYS
153
n
124
LYS
153
A
GLN
154
n
125
GLN
154
A
LYS
155
n
126
LYS
155
A
ILE
156
n
127
ILE
156
A
GLU
157
n
128
GLU
157
A
ASN
158
n
129
ASN
158
A
LYS
159
n
130
LYS
159
A
ALA
160
n
131
ALA
160
A
ALA
161
n
132
ALA
161
A
LYS
162
n
133
LYS
162
A
GLN
163
n
134
GLN
163
A
LYS
164
n
135
LYS
164
A
LYS
165
n
136
LYS
165
A
HIS
166
n
137
HIS
166
A
PRO
167
n
138
PRO
167
A
LYS
168
n
139
LYS
168
A
VAL
169
n
140
VAL
169
A
LEU
170
n
141
LEU
170
A
ILE
171
n
142
ILE
171
A
LEU
172
n
143
LEU
172
A
MSE
173
n
144
MSE
173
A
GLY
174
n
145
GLY
174
A
VAL
175
n
146
VAL
175
A
PRO
176
n
147
PRO
176
A
GLY
177
n
148
GLY
177
A
SER
178
n
149
SER
178
A
TYR
179
n
150
TYR
179
A
LEU
180
n
151
LEU
180
A
VAL
181
n
152
VAL
181
A
ALA
182
n
153
ALA
182
A
THR
183
n
154
THR
183
A
ASP
184
n
155
ASP
184
A
LYS
185
n
156
LYS
185
A
SER
186
n
157
SER
186
A
TYR
187
n
158
TYR
187
A
ILE
188
n
159
ILE
188
A
GLY
189
n
160
GLY
189
A
ASP
190
n
161
ASP
190
A
LEU
191
n
162
LEU
191
A
VAL
192
n
163
VAL
192
A
LYS
193
n
164
LYS
193
A
ILE
194
n
165
ILE
194
A
ALA
195
n
166
ALA
195
A
GLY
196
n
167
GLY
196
A
GLY
197
n
168
GLY
197
A
GLU
198
n
169
GLU
198
A
ASN
199
n
170
ASN
199
A
VAL
200
n
171
VAL
200
A
ILE
201
n
172
ILE
201
A
LYS
202
n
173
LYS
202
A
VAL
203
n
174
VAL
203
A
LYS
204
n
175
LYS
204
A
ASP
205
n
176
ASP
205
A
ARG
206
n
177
ARG
206
A
GLN
207
n
178
GLN
207
A
TYR
208
n
179
TYR
208
A
ILE
209
n
180
ILE
209
A
SER
210
n
181
SER
210
A
SER
211
n
182
SER
211
A
ASN
212
n
183
ASN
212
A
THR
213
n
184
THR
213
A
GLU
214
n
185
GLU
214
A
ASN
215
n
186
ASN
215
A
LEU
216
n
187
LEU
216
A
LEU
217
n
188
LEU
217
A
ASN
218
n
189
ASN
218
A
ILE
219
n
190
ILE
219
A
ASN
220
n
191
ASN
220
A
PRO
221
n
192
PRO
221
A
ASP
222
n
193
ASP
222
A
ILE
223
n
194
ILE
223
A
ILE
224
n
195
ILE
224
A
LEU
225
n
196
LEU
225
A
ARG
226
n
197
ARG
226
A
LEU
227
n
198
LEU
227
A
PRO
228
n
199
PRO
228
A
HIS
229
n
200
HIS
229
A
GLY
230
n
201
GLY
230
A
MSE
231
n
202
MSE
231
A
PRO
232
n
203
PRO
232
A
GLU
233
n
204
GLU
233
A
GLU
234
n
205
GLU
234
A
VAL
235
n
206
VAL
235
A
LYS
236
n
207
LYS
236
A
LYS
237
n
208
LYS
237
A
MSE
238
n
209
MSE
238
A
PHE
239
n
210
PHE
239
A
GLN
240
n
211
GLN
240
A
LYS
241
n
212
LYS
241
A
GLU
242
n
213
GLU
242
A
PHE
243
n
214
PHE
243
A
LYS
244
n
215
LYS
244
A
GLN
245
n
216
GLN
245
A
ASN
246
n
217
ASN
246
A
ASP
247
n
218
ASP
247
A
ILE
248
n
219
ILE
248
A
TRP
249
n
220
TRP
249
A
LYS
250
n
221
LYS
250
A
HIS
251
n
222
HIS
251
A
PHE
252
n
223
PHE
252
A
LYS
253
n
224
LYS
253
A
ALA
254
n
225
ALA
254
A
VAL
255
n
226
VAL
255
A
LYS
256
n
227
LYS
256
A
ASN
257
n
228
ASN
257
A
ASN
258
n
229
ASN
258
A
HIS
259
n
230
HIS
259
A
VAL
260
n
231
VAL
260
A
TYR
261
n
232
TYR
261
A
ASP
262
n
233
ASP
262
A
LEU
263
n
234
LEU
263
A
GLU
264
n
235
GLU
264
A
GLU
265
n
236
GLU
265
A
VAL
266
n
237
VAL
266
A
PRO
267
n
238
PRO
267
A
PHE
268
n
239
PHE
268
A
GLY
269
n
240
GLY
269
A
ILE
270
n
241
ILE
270
A
THR
271
n
242
THR
271
A
ALA
272
n
243
ALA
272
A
ASN
273
n
244
ASN
273
A
VAL
274
n
245
VAL
274
A
ASP
275
n
246
ASP
275
A
ALA
276
n
247
ALA
276
A
ASP
277
n
248
ASP
277
A
LYS
278
n
249
LYS
278
A
ALA
279
n
250
ALA
279
A
MSE
280
n
251
MSE
280
A
THR
281
n
252
THR
281
A
GLN
282
n
253
GLN
282
A
LEU
283
n
254
LEU
283
A
TYR
284
n
255
TYR
284
A
ASP
285
n
256
ASP
285
A
LEU
286
n
257
LEU
286
A
PHE
287
n
258
PHE
287
A
TYR
288
n
259
TYR
288
A
LYS
289
n
260
LYS
289
A
3.0288
0.0619
1.3196
2.7294
-0.2882
4.1950
-0.3029
0.0386
0.1318
-0.0368
0.0670
-0.2829
-0.2654
0.5306
0.2360
0.1389
-0.0103
-0.0529
0.0756
0.0110
-0.0459
refined
68.2710
49.0430
59.8780
X-RAY DIFFRACTION
2.0160
0.3154
0.4343
2.3589
0.0824
3.0929
-0.1520
0.2207
-0.0982
-0.1756
0.0852
-0.2561
0.2092
0.5478
0.0667
0.1050
0.0616
0.0109
0.0829
-0.0084
-0.0823
refined
69.3630
41.3810
56.0840
X-RAY DIFFRACTION
1.3527
0.4443
0.0495
1.2716
-0.1422
3.3746
-0.1714
-0.0456
-0.1674
0.0793
0.0425
0.1587
0.1211
-0.2656
0.1289
0.1677
0.0299
0.0477
-0.0108
-0.0358
-0.0165
refined
45.2530
34.7860
58.1900
X-RAY DIFFRACTION
3.3365
0.8368
0.6206
0.8296
-1.3246
3.6509
-0.2208
0.1234
-0.3629
0.0112
0.0375
0.0627
0.3194
-0.0902
0.1832
0.2343
-0.0103
0.0361
-0.0479
-0.0731
-0.0041
refined
47.6840
31.4590
51.2130
X-RAY DIFFRACTION
1.9749
1.0062
-1.5932
2.1524
-0.6202
2.0570
-0.3026
0.6881
-0.0526
-0.1003
0.2062
0.3533
-0.0357
-0.4542
0.0964
0.1406
-0.0305
-0.0534
0.1199
-0.0912
0.0102
refined
40.5200
35.8250
46.9780
X-RAY DIFFRACTION
2.1602
0.6919
0.2656
1.7734
0.0772
3.7522
-0.1605
0.1055
0.1970
-0.0172
0.0468
0.3320
-0.3097
-0.3297
0.1137
0.1597
0.0453
-0.0180
-0.0264
-0.0380
-0.0100
refined
41.6740
43.9270
51.6580
X-RAY DIFFRACTION
A
32
A
3
A
67
A
38
X-RAY DIFFRACTION
1
A
68
A
39
A
149
A
120
X-RAY DIFFRACTION
2
A
150
A
121
A
187
A
158
X-RAY DIFFRACTION
3
A
188
A
159
A
212
A
183
X-RAY DIFFRACTION
4
A
213
A
184
A
229
A
200
X-RAY DIFFRACTION
5
A
230
A
201
A
289
A
260
X-RAY DIFFRACTION
6
author_defined_assembly
1
monomeric
A
MSE
78
A
SE
MSE
49
1_555
A
HEM
300
B
FE
HEM
1_555
A
HEM
300
B
NA
HEM
1_555
85.3
A
MSE
78
A
SE
MSE
49
1_555
A
HEM
300
B
FE
HEM
1_555
A
HEM
300
B
NB
HEM
1_555
85.5
A
HEM
300
B
NA
HEM
1_555
A
HEM
300
B
FE
HEM
1_555
A
HEM
300
B
NB
HEM
1_555
90.5
A
MSE
78
A
SE
MSE
49
1_555
A
HEM
300
B
FE
HEM
1_555
A
HEM
300
B
NC
HEM
1_555
88.6
A
HEM
300
B
NA
HEM
1_555
A
HEM
300
B
FE
HEM
1_555
A
HEM
300
B
NC
HEM
1_555
173.9
A
HEM
300
B
NB
HEM
1_555
A
HEM
300
B
FE
HEM
1_555
A
HEM
300
B
NC
HEM
1_555
89.1
A
MSE
78
A
SE
MSE
49
1_555
A
HEM
300
B
FE
HEM
1_555
A
HEM
300
B
ND
HEM
1_555
91.3
A
HEM
300
B
NA
HEM
1_555
A
HEM
300
B
FE
HEM
1_555
A
HEM
300
B
ND
HEM
1_555
89.9
A
HEM
300
B
NB
HEM
1_555
A
HEM
300
B
FE
HEM
1_555
A
HEM
300
B
ND
HEM
1_555
176.7
A
HEM
300
B
NC
HEM
1_555
A
HEM
300
B
FE
HEM
1_555
A
HEM
300
B
ND
HEM
1_555
90.1
A
MSE
78
A
SE
MSE
49
1_555
A
HEM
300
B
FE
HEM
1_555
A
HIS
229
A
NE2
HIS
200
1_555
176.6
A
HEM
300
B
NA
HEM
1_555
A
HEM
300
B
FE
HEM
1_555
A
HIS
229
A
NE2
HIS
200
1_555
97.6
A
HEM
300
B
NB
HEM
1_555
A
HEM
300
B
FE
HEM
1_555
A
HIS
229
A
NE2
HIS
200
1_555
92.8
A
HEM
300
B
NC
HEM
1_555
A
HEM
300
B
FE
HEM
1_555
A
HIS
229
A
NE2
HIS
200
1_555
88.5
A
HEM
300
B
ND
HEM
1_555
A
HEM
300
B
FE
HEM
1_555
A
HIS
229
A
NE2
HIS
200
1_555
90.4
A
MSE
45
SELENOMETHIONINE
A
MSE
16
MET
A
MSE
78
SELENOMETHIONINE
A
MSE
49
MET
A
MSE
103
SELENOMETHIONINE
A
MSE
74
MET
A
MSE
112
SELENOMETHIONINE
A
MSE
83
MET
A
MSE
125
SELENOMETHIONINE
A
MSE
96
MET
A
MSE
173
SELENOMETHIONINE
A
MSE
144
MET
A
MSE
231
SELENOMETHIONINE
A
MSE
202
MET
A
MSE
238
SELENOMETHIONINE
A
MSE
209
MET
A
MSE
280
SELENOMETHIONINE
A
MSE
251
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
37
A
N
VAL
8
A
O
HIS
92
A
O
HIS
63
A
N
SER
95
A
N
SER
66
A
O
TYR
115
A
O
TYR
86
A
O
GLU
198
A
O
GLU
169
A
N
VAL
169
A
N
VAL
140
A
N
VAL
175
A
N
VAL
146
A
O
SER
178
A
O
SER
149
A
N
VAL
181
A
N
VAL
152
A
O
ILE
209
A
O
ILE
180
A
O
GLU
198
A
O
GLU
169
A
N
VAL
169
A
N
VAL
140
A
N
GLY
174
A
N
GLY
145
A
O
LEU
227
A
O
LEU
198
A
N
ARG
226
A
N
ARG
197
A
O
TYR
261
A
O
TYR
232
1
A
GLY
30
A
GLY
1
1
Y
1
A
SER
31
A
SER
2
1
Y
1
A
VAL
266
11.20
1
A
A
VAL
PRO
266
267
57.37
1
A
GLU
79
-150.00
68.30
1
A
LYS
89
39.32
65.49
1
A
ARG
138
-143.08
37.99
2.10
10.00
0.370
15694
32.785
0.43
0.00
0.00
0.43
0.00
-0.85
0.957
0.930
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.26293
0.20105
0.20422
1.95
50.00
963
17938
5.1
84.60
8.493
0.136
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
SAD
0.217
0.198
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
MASK
1.95
50.00
183
2302
43
0
2076
0.013
0.022
2169
1.390
2.041
2939
9.415
5.000
257
38.103
25.914
93
17.497
15.000
414
18.514
15.000
5
0.096
0.200
317
0.007
0.020
1601
0.192
0.200
1035
0.303
0.200
1471
0.151
0.200
167
0.037
0.200
1
0.120
0.200
19
0.206
0.200
16
0.754
1.500
1336
1.072
2.000
2104
1.994
3.000
949
2.772
4.500
833
0.417
0.262
2.02
59
1235
20
80.02
1.950
50.000
2Q8P
19425
0.068
1
30.000
12.100
86.000
0.359
1.95
2.02
1
7.60
79.00
0.268
2.02
2.10
1
7.90
85.60
0.192
2.10
2.20
1
7.90
85.00
0.150
2.20
2.31
1
7.90
86.80
0.167
2.31
2.46
1
15.20
86.70
0.122
2.46
2.65
1
15.00
86.80
0.095
2.65
2.91
1
14.70
87.20
0.069
2.91
3.33
1
14.50
86.30
0.055
3.33
4.20
1
14.40
85.40
0.059
4.20
50.00
1
14.50
90.90
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
phasing
Tom Terwilliger
terwilliger@LANL.gov
http://www.solve.lanl.gov/
SOLVE
package
phasing
Terwilliger, T. C
terwilliger@LANL.gov
24-June-2006
http://www.solve.lanl.gov/
RESOLVE
package
2.11
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
24/04/2001
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
refmac_5.2.0019
data extraction
PDB
sw-help@rcsb.rutgers.edu
April. 3, 2006
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
2.000
data collection
HKL-2000
data reduction
HKL-2000
Iron-regulated surface determinant E
Crystal Structure of selenomethionine labelled S. aureus IsdE complexed with heme
1
N
N
2
N
N
3
N
N
A
THR
40
A
THR
11
HELX_P
A
LEU
50
A
LEU
21
1
1
11
A
PRO
65
A
PRO
36
HELX_P
A
LYS
69
A
LYS
40
5
2
5
A
ASN
81
A
ASN
52
HELX_P
A
LEU
88
A
LEU
59
1
3
8
A
ILE
99
A
ILE
70
HELX_P
A
ASN
111
A
ASN
82
1
4
13
A
SER
121
A
SER
92
HELX_P
A
PHE
136
A
PHE
107
1
5
16
A
ARG
138
A
ARG
109
HELX_P
A
GLN
163
A
GLN
134
1
6
26
A
SER
186
A
SER
157
HELX_P
A
ALA
195
A
ALA
166
1
7
10
A
MSE
231
A
MSE
202
HELX_P
A
ASN
246
A
ASN
217
1
8
16
A
ASP
247
A
ASP
218
HELX_P
A
HIS
251
A
HIS
222
5
9
5
A
PHE
252
A
PHE
223
HELX_P
A
ASN
257
A
ASN
228
1
10
6
A
ASP
275
A
ASP
246
HELX_P
A
TYR
288
A
TYR
259
1
11
14
metalc
2.486
A
MSE
78
A
SE
MSE
49
1_555
A
HEM
300
B
FE
HEM
1_555
metalc
1.963
A
HIS
229
A
NE2
HIS
200
1_555
A
HEM
300
B
FE
HEM
1_555
covale
1.330
A
THR
44
A
C
THR
15
1_555
A
MSE
45
A
N
MSE
16
1_555
covale
1.337
A
MSE
45
A
C
MSE
16
1_555
A
THR
46
A
N
THR
17
1_555
covale
1.322
A
PRO
77
A
C
PRO
48
1_555
A
MSE
78
A
N
MSE
49
1_555
covale
1.329
A
MSE
78
A
C
MSE
49
1_555
A
GLU
79
A
N
GLU
50
1_555
covale
1.327
A
GLU
102
A
C
GLU
73
1_555
A
MSE
103
A
N
MSE
74
1_555
covale
1.338
A
MSE
103
A
C
MSE
74
1_555
A
GLN
104
A
N
GLN
75
1_555
covale
1.333
A
ASN
111
A
C
ASN
82
1_555
A
MSE
112
A
N
MSE
83
1_555
covale
1.329
A
MSE
112
A
C
MSE
83
1_555
A
LYS
113
A
N
LYS
84
1_555
covale
1.331
A
GLY
124
A
C
GLY
95
1_555
A
MSE
125
A
N
MSE
96
1_555
covale
1.334
A
MSE
125
A
C
MSE
96
1_555
A
GLN
126
A
N
GLN
97
1_555
covale
1.329
A
LEU
172
A
C
LEU
143
1_555
A
MSE
173
A
N
MSE
144
1_555
covale
1.327
A
MSE
173
A
C
MSE
144
1_555
A
GLY
174
A
N
GLY
145
1_555
covale
1.331
A
GLY
230
A
C
GLY
201
1_555
A
MSE
231
A
N
MSE
202
1_555
covale
1.345
A
MSE
231
A
C
MSE
202
1_555
A
PRO
232
A
N
PRO
203
1_555
covale
1.330
A
LYS
237
A
C
LYS
208
1_555
A
MSE
238
A
N
MSE
209
1_555
covale
1.340
A
MSE
238
A
C
MSE
209
1_555
A
PHE
239
A
N
PHE
210
1_555
covale
1.339
A
ALA
279
A
C
ALA
250
1_555
A
MSE
280
A
N
MSE
251
1_555
covale
1.323
A
MSE
280
A
C
MSE
251
1_555
A
THR
281
A
N
THR
252
1_555
METAL TRANSPORT
helical backbone metal receptor superfamily, METAL TRANSPORT
Q7A652_STAAN
UNP
1
32
Q7A652
GEFRIVPTTVALTMTLDKLDLPIVGKPTSYKTLPNRYKDVPEIGQPMEPNVEAVKKLKPTHVLSVSTIKDEMQPFYKQLN
MKGYFYDFDSLKGMQKSITQLGDQFNRKAQAKELNDHLNSVKQKIENKAAKQKKHPKVLILMGVPGSYLVATDKSYIGDL
VKIAGGENVIKVKDRQYISSNTENLLNINPDIILRLPHGMPEEVKKMFQKEFKQNDIWKHFKAVKNNHVYDLEEVPFGIT
ANVDADKAMTQLYDLFYK
32
289
2Q8P
32
289
Q7A652
A
1
3
260
1
EXPRESSION TAG
GLY
30
2Q8P
A
Q7A652
UNP
1
1
EXPRESSION TAG
SER
31
2Q8P
A
Q7A652
UNP
2
3
4
4
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
A
ILE
36
A
ILE
7
A
PRO
38
A
PRO
9
A
HIS
92
A
HIS
63
A
VAL
96
A
VAL
67
A
TYR
115
A
TYR
86
A
TYR
117
A
TYR
88
A
GLU
198
A
GLU
169
A
ASN
199
A
ASN
170
A
LYS
168
A
LYS
139
A
VAL
175
A
VAL
146
A
SER
178
A
SER
149
A
ALA
182
A
ALA
153
A
TYR
208
A
TYR
179
A
SER
210
A
SER
181
A
GLU
198
A
GLU
169
A
ASN
199
A
ASN
170
A
LYS
168
A
LYS
139
A
VAL
175
A
VAL
146
A
ILE
223
A
ILE
194
A
PRO
228
A
PRO
199
A
VAL
260
A
VAL
231
A
ASP
262
A
ASP
233
BINDING SITE FOR RESIDUE HEM A 300
Software
21
A
THR
40
A
THR
11
21
1_555
A
VAL
41
A
VAL
12
21
1_555
A
ALA
42
A
ALA
13
21
1_555
A
SER
60
A
SER
31
21
1_555
A
TYR
61
A
TYR
32
21
1_555
A
GLN
76
A
GLN
47
21
1_555
A
PRO
77
A
PRO
48
21
1_555
A
MSE
78
A
MSE
49
21
1_555
A
THR
98
A
THR
69
21
1_555
A
ILE
99
A
ILE
70
21
1_555
A
VAL
175
A
VAL
146
21
1_555
A
PRO
176
A
PRO
147
21
1_555
A
TYR
208
A
TYR
179
21
1_555
A
HIS
229
A
HIS
200
21
1_555
A
GLY
230
A
GLY
201
21
1_555
A
ILE
270
A
ILE
241
21
1_555
A
THR
271
A
THR
242
21
1_555
A
HOH
307
C
HOH
21
1_555
A
HOH
313
C
HOH
21
1_555
A
HOH
316
C
HOH
21
1_555
A
HOH
376
C
HOH
21
1_555
96
P 43 21 2