0.016000 0.009238 0.000000 0.000000 0.018475 0.000000 0.000000 0.000000 0.012186 0.00000 0.00000 0.00000 Rezacova, P. Kozisek, M. Saskova, K. Brynda, J. Konvalinka, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 62.500 62.500 82.060 C32 H45 N3 O4 S 567.782 2-[2-HYDROXY-3-(3-HYDROXY-2-METHYL-BENZOYLAMINO)-4-PHENYL SULFANYL-BUTYL]-DECAHYDRO-ISOQUINOLINE-3-CARBOXYLIC ACID TERT-BUTYLAMIDE NELFINAVIR MESYLATE AG1343 non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 S C N 2 S C N 3 N C N 4 N C N 5 N C N 6 N C N 7 N N N 8 S C N 9 N C N 10 N C N 11 N C N 12 N N N 13 N C N 14 N C N 15 N C N 16 N C N 17 N O N 18 N C N 19 R C N 20 R C N 21 N O N 22 N N N 23 N C N 24 N C N 25 N O Y 26 N C Y 27 N C Y 28 N C Y 29 N C Y 30 N C Y 31 N C N 32 N O N 33 N C N 34 N S Y 35 N C Y 36 N C Y 37 N C Y 38 N C Y 39 N C Y 40 N C N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N N N 87 S C N 88 N C N 89 N O N 90 N C N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N N N 100 S C N 101 N C N 102 N O N 103 N C N 104 N C N 105 N C N 106 N N N 107 N C N 108 N N N 109 N N N 110 N O N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N N N 127 S C N 128 N C N 129 N O N 130 N C N 131 N C N 132 N O N 133 N N N 134 N O N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N N N 144 S C N 145 N C N 146 N O N 147 N C N 148 N C N 149 N O N 150 N O N 151 N O N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N N N 160 R C N 161 N C N 162 N O N 163 N C N 164 N S N 165 N O N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N N N 174 S C N 175 N C N 176 N O N 177 N C N 178 N C N 179 N C N 180 N O N 181 N N N 182 N O N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N N N 194 S C N 195 N C N 196 N O N 197 N C N 198 N C N 199 N C N 200 N O N 201 N O N 202 N O N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N N N 213 N C N 214 N C N 215 N O N 216 N O N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N N N 223 S C N 224 N C N 225 N O N 226 N C Y 227 N C Y 228 N N Y 229 N C Y 230 N C Y 231 N N N 232 N O N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N O N 244 N H N 245 N H N 246 N N N 247 S C N 248 N C N 249 N O N 250 S C N 251 N C N 252 N C N 253 N C N 254 N O N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 N C N 273 N C N 274 N C N 275 N C N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N C N 297 N C N 298 N N N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 N C N 320 N C N 321 N S N 322 N C N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C Y 345 N C N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C N 363 N C N 364 N C N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N N N 376 S C N 377 N C N 378 N O N 379 N C N 380 N O N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N N N 390 S C N 391 N C N 392 N O N 393 R C N 394 N O N 395 N C N 396 N O N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N N N 407 S C N 408 N C N 409 N O N 410 N C Y 411 N C Y 412 N C Y 413 N C Y 414 N N Y 415 N C Y 416 N C Y 417 N C Y 418 N C Y 419 N C N 420 N O N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N C Y 443 N C N 444 N O N 445 N O N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N N N 458 S C N 459 N C N 460 N O N 461 N C N 462 N C N 463 N C N 464 N O N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N doub N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N doub N 61 N sing Y 62 N doub Y 63 N sing Y 64 N sing N 65 N sing Y 66 N doub N 67 N sing Y 68 N sing N 69 N sing Y 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing Y 78 N doub Y 79 N sing Y 80 N sing N 81 N sing Y 82 N doub N 83 N sing Y 84 N sing N 85 N sing Y 86 N doub N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N sing N 226 N sing N 227 N sing Y 228 N sing Y 229 N doub Y 230 N doub N 231 N sing Y 232 N sing N 233 N sing Y 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N doub N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N doub N 332 N sing N 333 N sing N 334 N sing N 335 N sing Y 336 N doub Y 337 N sing Y 338 N sing N 339 N sing Y 340 N doub N 341 N sing Y 342 N doub N 343 N sing Y 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N doub N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N doub N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N doub N 401 N sing N 402 N sing N 403 N sing N 404 N sing Y 405 N doub Y 406 N sing Y 407 N sing N 408 N sing Y 409 N doub Y 410 N sing Y 411 N sing N 412 N sing Y 413 N sing Y 414 N doub N 415 N sing Y 416 N doub N 417 N sing Y 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N doub N 429 N sing N 430 N sing N 431 N sing N 432 N sing Y 433 N doub Y 434 N sing Y 435 N sing N 436 N sing Y 437 N doub N 438 N sing Y 439 N doub N 440 N sing Y 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N doub N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing To be Published 0353 Evolutionary pathway of HIV resistance analyzed on molecular level: Enzymatic activities, 3-D structures and thermodynamics of HIV proteases resistant to nelfinavir 10.2210/pdb2qak/pdb pdb_00002qak 120 1 IMAGE PLATE 2005-03-03 MAR scanner 345 mm plate mirrors SINGLE WAVELENGTH M x-ray 1 1.54179 1.0 1.54179 ROTATING ANODE ENRAF-NONIUS FR591 10762.707 PROTEASE RETROPEPSIN 3.4.23.16 D30N, L90M 2 man polymer 567.782 2-[2-HYDROXY-3-(3-HYDROXY-2-METHYL-BENZOYLAMINO)-4-PHENYL SULFANYL-BUTYL]-DECAHYDRO-ISOQUINOLINE-3-CARBOXYLIC ACID TERT-BUTYLAMIDE 1 syn non-polymer 18.015 water 100 nat water HIV-1 PROTEASE E.C.3.4.23.16 no no PQITLWQRPLVTIKIGGQLKEALLDTGADNTVLEEMSLPGRWKPKMIGGIGGFIAVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLMTQIGCTLNF PQITLWQRPLVTIKIGGQLKEALLDTGADNTVLEEMSLPGRWKPKMIGGIGGFIAVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLMTQIGCTLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HIV-1 type B sample gag-pol human immunodeficiency virus 1 Escherichia coli BL21 (DE3) PLASMID pET like, T7 promotor driven 1 2.15 42.74 VAPOR DIFFUSION, HANGING DROP 5.4 reservoir solution: 0.5M (NH4)2SO4, 0.1M MES pH 5.4 or pH 5.5; drops: 2+1ul (protein+reservoir}; protein: 3-5mg/ml 5-fold molar excess of inhibitor, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model struct_ncs_dom_lim repository Initial release Version format compliance Database references Derived calculations Data collection Refinement description 1 0 2008-07-01 1 1 2011-07-13 1 2 2021-10-20 1 3 2023-08-30 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_label_seq_id N RCSB Y RCSB 2007-06-16 REL REL 1UN 2-[2-HYDROXY-3-(3-HYDROXY-2-METHYL-BENZOYLAMINO)-4-PHENYL SULFANYL-BUTYL]-DECAHYDRO-ISOQUINOLINE-3-CARBOXYLIC ACID TERT-BUTYLAMIDE HOH water 1NH0 PDB experimental model 1UN 1001 2 1UN 1UN 1001 A HOH 1 3 HOH HOH 1002 A HOH 2 3 HOH HOH 1003 A HOH 3 3 HOH HOH 1004 A HOH 4 3 HOH HOH 1005 A HOH 5 3 HOH HOH 1006 A HOH 7 3 HOH HOH 1007 A HOH 8 3 HOH HOH 1008 A HOH 11 3 HOH HOH 1009 A HOH 14 3 HOH HOH 1010 A HOH 15 3 HOH HOH 1011 A HOH 17 3 HOH HOH 1012 A HOH 20 3 HOH HOH 1013 A HOH 24 3 HOH HOH 1014 A HOH 25 3 HOH HOH 1015 A HOH 30 3 HOH HOH 1016 A HOH 31 3 HOH HOH 1017 A HOH 33 3 HOH HOH 1018 A HOH 38 3 HOH HOH 1019 A HOH 41 3 HOH HOH 1020 A HOH 42 3 HOH HOH 1021 A HOH 45 3 HOH HOH 1022 A HOH 51 3 HOH HOH 1023 A HOH 53 3 HOH HOH 1024 A HOH 54 3 HOH HOH 1025 A HOH 55 3 HOH HOH 1026 A HOH 56 3 HOH HOH 1027 A HOH 57 3 HOH HOH 1028 A HOH 58 3 HOH HOH 1029 A HOH 59 3 HOH HOH 1030 A HOH 61 3 HOH HOH 1031 A HOH 63 3 HOH HOH 1032 A HOH 66 3 HOH HOH 1033 A HOH 67 3 HOH HOH 1034 A HOH 73 3 HOH HOH 1035 A HOH 75 3 HOH HOH 1036 A HOH 76 3 HOH HOH 1037 A HOH 78 3 HOH HOH 1038 A HOH 85 3 HOH HOH 1039 A HOH 86 3 HOH HOH 1040 A HOH 87 3 HOH HOH 1041 A HOH 89 3 HOH HOH 1042 A HOH 93 3 HOH HOH 1043 A HOH 95 3 HOH HOH 1044 A HOH 96 3 HOH HOH 1045 A HOH 99 3 HOH HOH 1046 A HOH 101 3 HOH HOH 1047 A HOH 102 3 HOH HOH 1048 A HOH 103 3 HOH HOH 1049 A HOH 104 3 HOH HOH 1050 A HOH 110 3 HOH HOH 1051 A HOH 111 3 HOH HOH 1052 A HOH 112 3 HOH HOH 1053 A HOH 6 3 HOH HOH 100 B HOH 9 3 HOH HOH 101 B HOH 10 3 HOH HOH 102 B HOH 13 3 HOH HOH 103 B HOH 16 3 HOH HOH 104 B HOH 18 3 HOH HOH 105 B HOH 19 3 HOH HOH 106 B HOH 21 3 HOH HOH 107 B HOH 22 3 HOH HOH 108 B HOH 23 3 HOH HOH 109 B HOH 26 3 HOH HOH 110 B HOH 27 3 HOH HOH 111 B HOH 28 3 HOH HOH 112 B HOH 29 3 HOH HOH 113 B HOH 34 3 HOH HOH 114 B HOH 35 3 HOH HOH 115 B HOH 37 3 HOH HOH 116 B HOH 39 3 HOH HOH 117 B HOH 40 3 HOH HOH 118 B HOH 43 3 HOH HOH 119 B HOH 44 3 HOH HOH 120 B HOH 46 3 HOH HOH 121 B HOH 47 3 HOH HOH 122 B HOH 48 3 HOH HOH 123 B HOH 50 3 HOH HOH 124 B HOH 52 3 HOH HOH 125 B HOH 60 3 HOH HOH 126 B HOH 64 3 HOH HOH 127 B HOH 65 3 HOH HOH 128 B HOH 68 3 HOH HOH 129 B HOH 69 3 HOH HOH 130 B HOH 70 3 HOH HOH 131 B HOH 72 3 HOH HOH 132 B HOH 77 3 HOH HOH 133 B HOH 79 3 HOH HOH 134 B HOH 81 3 HOH HOH 135 B HOH 83 3 HOH HOH 136 B HOH 84 3 HOH HOH 137 B HOH 88 3 HOH HOH 138 B HOH 91 3 HOH HOH 139 B HOH 92 3 HOH HOH 140 B HOH 98 3 HOH HOH 141 B HOH 100 3 HOH HOH 142 B HOH 105 3 HOH HOH 143 B HOH 106 3 HOH HOH 144 B HOH 107 3 HOH HOH 145 B HOH 108 3 HOH HOH 146 B HOH 109 3 HOH HOH 147 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A GLN 7 n 7 GLN 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASN 30 n 30 ASN 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A ALA 55 n 55 ALA 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A LEU 63 n 63 LEU 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A MET 90 n 90 MET 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B GLN 7 n 7 GLN 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B LEU 10 n 10 LEU 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B LYS 14 n 14 LYS 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASP 25 n 25 ASP 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASN 30 n 30 ASN 30 B THR 31 n 31 THR 31 B VAL 32 n 32 VAL 32 B LEU 33 n 33 LEU 33 B GLU 34 n 34 GLU 34 B GLU 35 n 35 GLU 35 B MET 36 n 36 MET 36 B SER 37 n 37 SER 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B ARG 41 n 41 ARG 41 B TRP 42 n 42 TRP 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B MET 46 n 46 MET 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B ILE 54 n 54 ILE 54 B ALA 55 n 55 ALA 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B ILE 62 n 62 ILE 62 B LEU 63 n 63 LEU 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B CYS 67 n 67 CYS 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B LYS 70 n 70 LYS 70 B ALA 71 n 71 ALA 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B VAL 82 n 82 VAL 82 B ASN 83 n 83 ASN 83 B ILE 84 n 84 ILE 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B LEU 89 n 89 LEU 89 B MET 90 n 90 MET 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B CYS 95 n 95 CYS 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B 0.3404 0.9086 0.9211 3.9875 -0.2822 7.2966 0.1799 0.1634 0.0709 -0.0157 -0.1978 -0.7298 -0.4371 0.7125 0.0180 -0.0935 -0.0049 0.0111 -0.0722 0.0210 -0.0175 refined 1.2750 56.9340 2.6410 X-RAY DIFFRACTION 0.7775 -0.5347 1.0995 8.6863 -3.0775 3.4263 -0.0302 0.1088 0.1527 -0.2076 0.0267 -0.1326 -0.0301 0.1386 0.0035 -0.1275 0.0065 0.0083 -0.1685 0.0052 -0.1438 refined -6.7350 63.4380 -4.9730 X-RAY DIFFRACTION 9.0144 2.4739 -4.4811 7.4171 -2.5623 8.8296 -0.1951 0.8111 0.1281 -1.0300 0.5161 0.6624 0.7158 -1.0304 -0.3210 0.0120 -0.0685 -0.1382 0.0269 0.0594 0.0020 refined -17.0190 59.4820 -10.1350 X-RAY DIFFRACTION 0.0519 0.2060 -0.6117 5.3182 -0.1353 8.3806 0.0708 -0.0911 -0.1930 0.0217 -0.1558 -0.7947 0.1938 0.7193 0.0850 -0.1259 0.0227 0.0041 -0.0799 -0.0072 -0.0231 refined 1.3500 51.3540 5.5670 X-RAY DIFFRACTION 0.2135 -0.0794 -0.7196 10.2240 -3.9632 4.1817 0.0169 -0.1075 -0.1370 0.3205 -0.0165 -0.1897 -0.0364 0.1158 -0.0004 -0.1397 -0.0027 -0.0123 -0.1692 0.0027 -0.1500 refined -6.7480 44.8380 12.9770 X-RAY DIFFRACTION 7.0818 -2.3310 1.5776 7.1560 -3.2607 8.5336 -0.2538 -0.6895 -0.2286 0.8961 0.5496 0.7041 -0.6045 -1.0448 -0.2958 0.0170 0.0800 0.1155 0.0672 0.0304 0.0266 refined -17.1240 48.7760 18.4380 X-RAY DIFFRACTION A 1 A 1 A 9 A 9 X-RAY DIFFRACTION 1 A 86 A 86 A 99 A 99 X-RAY DIFFRACTION 1 A 10 A 10 A 32 A 32 X-RAY DIFFRACTION 2 A 63 A 63 A 85 A 85 X-RAY DIFFRACTION 2 A 33 A 33 A 62 A 62 X-RAY DIFFRACTION 3 B 1 B 1 B 9 B 9 X-RAY DIFFRACTION 4 B 86 B 86 B 99 B 99 X-RAY DIFFRACTION 4 B 10 B 10 B 32 B 32 X-RAY DIFFRACTION 5 B 63 B 63 B 85 B 85 X-RAY DIFFRACTION 5 B 33 B 33 B 62 B 62 X-RAY DIFFRACTION 6 author_and_software_defined_assembly PISA 2 dimeric 4850 -30 8920 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 97 B O LEU 97 B O ASN 98 B O ASN 98 A N THR 96 A N THR 96 A N LEU 97 A N LEU 97 B O ILE 3 B O ILE 3 A N LYS 45 A N LYS 45 A O VAL 56 A O VAL 56 A N ILE 66 A N ILE 66 A O HIS 69 A O HIS 69 A O LEU 76 A O LEU 76 A N LEU 33 A N LEU 33 A N VAL 32 A N VAL 32 A O ILE 84 A O ILE 84 A O ILE 85 A O ILE 85 A N LEU 23 A N LEU 23 A O LYS 20 A O LYS 20 A N ILE 13 A N ILE 13 A N LYS 14 A N LYS 14 A O GLU 65 A O GLU 65 B N LYS 45 B N LYS 45 B O VAL 56 B O VAL 56 B N ILE 64 B N ILE 64 B O ALA 71 B O ALA 71 B O LEU 76 B O LEU 76 B N LEU 33 B N LEU 33 B N VAL 32 B N VAL 32 B O ILE 84 B O ILE 84 B O ILE 85 B O ILE 85 B N LEU 23 B N LEU 23 B O LYS 20 B O LYS 20 B N ILE 13 B N ILE 13 B N LYS 14 B N LYS 14 B O GLU 65 B O GLU 65 1 A CG ARG 41 A CG ARG 41 1 Y 1 A CD ARG 41 A CD ARG 41 1 Y 1 A NE ARG 41 A NE ARG 41 1 Y 1 A CZ ARG 41 A CZ ARG 41 1 Y 1 A NH1 ARG 41 A NH1 ARG 41 1 Y 1 A NH2 ARG 41 A NH2 ARG 41 1 Y 1 B CG ARG 41 B CG ARG 41 1 Y 1 B CD ARG 41 B CD ARG 41 1 Y 1 B NE ARG 41 B NE ARG 41 1 Y 1 B CZ ARG 41 B CZ ARG 41 1 Y 1 B NH1 ARG 41 B NH1 ARG 41 1 Y 1 B NH2 ARG 41 B NH2 ARG 41 1 Y 1 B B O O HOH HOH 109 137 1.71 26.877 0.27 0.13 0.00 0.27 0.00 -0.40 0.937 0.921 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.23603 0.2033 0.20491 2.20 54.23 430 8471 4.8 95.93 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.462 0.240 0.80 0.80 1.40 1NH0 MAXIMUM LIKELIHOOD MASK 2.20 54.23 100 1696 80 0 1516 0.015 0.022 1631 1.578 2.036 2221 6.964 5.000 198 42.495 25.273 55 14.782 15.000 276 14.464 15.000 6 0.094 0.200 263 0.006 0.020 1164 0.210 0.200 758 0.312 0.200 1086 0.197 0.200 87 0.219 0.200 37 0.167 0.200 5 0.667 1.500 981 1.131 2.000 1594 1.787 3.000 650 2.593 4.500 626 1 A 1 749 X-RAY DIFFRACTION medium positional 0.24 0.50 1 A 2 40 X-RAY DIFFRACTION medium positional 0.07 0.50 1 A 1 749 X-RAY DIFFRACTION medium thermal 0.54 2.00 1 A 2 40 X-RAY DIFFRACTION medium thermal 0.26 2.00 0.458 0.297 2.258 21 505 20 78.04 32.6 2.20 54.23 2QAK 8471 8471 0.079 0.079 1 6.7 7.1 95.93 0.377 2.20 2.32 1.9 1177 0.377 6.5 87.8 data collection MAR345dtb phasing MOLREP refinement REFMAC 5.2 data reduction MOSFLM data scaling SCALA N HIV-1 PR mutant in complex with nelfinavir 1 N N 1 N N 2 N N 3 N N 3 N N the biological assembly is dimer A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 1 6 A GLN 92 A GLN 92 HELX_P A GLY 94 A GLY 94 5 2 3 B GLY 86 B GLY 86 HELX_P B THR 91 B THR 91 1 3 6 B GLN 92 B GLN 92 HELX_P B GLY 94 B GLY 94 5 4 3 HYDROLASE HIV protease inhibitors; protease-inhibitor structure; isothermal calorimetry; antiviral resistance development, HYDROLASE A B A A PRO 1 A PRO 1 A PHE 99 A PHE 99 4 B PRO 1 B PRO 1 B PHE 99 B PHE 99 4 A 1UN 1001 C 1UN A 1UN 1001 C 1UN 4 POL_HV1BR UNP 1 69 P03367 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 69 167 2QAK 1 99 P03367 A 1 1 99 69 167 2QAK 1 99 P03367 B 1 1 99 1 ASP engineered mutation ASN 30 2QAK A P03367 UNP 98 30 1 LYS engineered mutation ALA 55 2QAK A P03367 UNP 123 55 1 LEU engineered mutation MET 90 2QAK A P03367 UNP 158 90 2 ASP engineered mutation ASN 30 2QAK B P03367 UNP 98 30 2 LYS engineered mutation ALA 55 2QAK B P03367 UNP 123 55 2 LEU engineered mutation MET 90 2QAK B P03367 UNP 158 90 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A GLN 2 A GLN 2 A ILE 3 A ILE 3 B THR 96 B THR 96 B ASN 98 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 2 B GLN 2 B ILE 3 B ILE 3 A LYS 43 A LYS 43 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A THR 31 A THR 31 A LEU 33 A LEU 33 A ILE 84 A ILE 84 A ILE 85 A ILE 85 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A GLY 52 A GLY 52 A ILE 66 A ILE 66 B LYS 43 B LYS 43 B GLY 48 B GLY 48 B PHE 53 B PHE 53 B ILE 66 B ILE 66 B HIS 69 B HIS 69 B VAL 77 B VAL 77 B VAL 32 B VAL 32 B LEU 33 B LEU 33 B ILE 84 B ILE 84 B ILE 85 B ILE 85 B GLN 18 B GLN 18 B LEU 24 B LEU 24 B LEU 10 B LEU 10 B ILE 15 B ILE 15 B PHE 53 B PHE 53 B ILE 66 B ILE 66 BINDING SITE FOR RESIDUE 1UN A 1001 A 1UN 1001 Software 24 A ASP 25 A ASP 25 24 1_555 A GLY 27 A GLY 27 24 1_555 A ASP 29 A ASP 29 24 1_555 A ASN 30 A ASN 30 24 1_555 A ILE 47 A ILE 47 24 1_555 A GLY 48 A GLY 48 24 1_555 A GLY 49 A GLY 49 24 1_555 A ILE 50 A ILE 50 24 1_555 A THR 80 A THR 80 24 1_555 A PRO 81 A PRO 81 24 1_555 A ILE 84 A ILE 84 24 1_555 A HOH 1002 D HOH 24 1_555 A HOH 1047 D HOH 24 1_555 A HOH 1048 D HOH 24 1_555 B ASP 25 B ASP 25 24 1_555 B GLY 27 B GLY 27 24 1_555 B ASP 29 B ASP 29 24 1_555 B ASN 30 B ASN 30 24 1_555 B GLY 48 B GLY 48 24 1_555 B GLY 49 B GLY 49 24 1_555 B ILE 50 B ILE 50 24 1_555 B THR 80 B THR 80 24 1_555 B PRO 81 B PRO 81 24 1_555 B ILE 84 B ILE 84 24 1_555 169 P 61