0.019653
0.000000
0.000000
0.000000
0.017197
0.000000
0.000000
0.000000
0.016102
0.000000
0.000000
0.000000
Wang, Y.F.
Tie, Y.
Boross, P.I.
Tozser, J.
Ghosh, A.K.
Harrison, R.W.
Weber, I.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
50.884
58.149
62.106
C28 H36 N2 O9 S
576.658
(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(2S,3R)-3-HYDROXY-4-(N-ISOBUTYLBENZO[D][1,3]DIOXOLE-5-SULFONAMIDO)-1-PHENYLBUTAN-2-YLCARBAMATE
RL-98065; [(1R,5S,6R)-2,8-DIOXABICYCLO[3.3.0]OCT-6-YL]N-[(2S,3R)-4-[(3,4-METHYLENEDIOXYPHENYL)SULFONYL-(2-METHYLPROPYL)AMINO]-3-HYDROXY-1-PHENYL-BUTAN-2-YL] CARBAMATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O S
78.133
DIMETHYL SULFOXIDE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
C
N
2
N
O
N
3
N
C
N
4
N
O
Y
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
N
10
N
S
N
11
N
O
N
12
N
O
N
13
N
N
N
14
N
C
N
15
N
C
N
16
N
C
N
17
N
C
N
18
N
C
N
19
R
C
N
20
N
O
N
21
S
C
N
22
N
N
N
23
N
C
N
24
N
O
N
25
N
O
N
26
R
C
N
27
N
C
N
28
N
O
N
29
R
C
N
30
N
O
N
31
N
C
N
32
N
C
N
33
S
C
N
34
N
C
Y
35
N
C
Y
36
N
C
Y
37
N
C
Y
38
N
C
Y
39
N
C
Y
40
N
C
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
N
N
78
S
C
N
79
N
C
N
80
N
O
N
81
N
C
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
C
N
97
N
N
N
98
N
C
N
99
N
N
N
100
N
N
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
S
C
N
119
N
C
N
120
N
O
N
121
N
C
N
122
N
C
N
123
N
O
N
124
N
N
N
125
N
O
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
R
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
S
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
S
N
165
N
O
N
166
N
C
N
167
N
C
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
N
N
175
S
C
N
176
N
C
N
177
N
O
N
178
N
C
N
179
N
C
N
180
N
C
N
181
N
O
N
182
N
N
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
O
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
N
C
N
215
N
C
N
216
N
O
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
C
N
224
N
O
N
225
N
C
N
226
N
O
N
227
N
C
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
Y
242
N
C
Y
243
N
N
Y
244
N
C
Y
245
N
C
Y
246
N
N
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
S
C
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
O
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
C
N
313
N
N
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
N
335
N
C
N
336
N
S
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
P
N
374
N
O
N
375
N
O
N
376
N
O
N
377
N
O
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
N
383
N
C
N
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
N
400
N
O
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
N
N
410
S
C
N
411
N
C
N
412
N
O
N
413
R
C
N
414
N
O
N
415
N
C
N
416
N
O
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
N
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
N
N
454
S
C
N
455
N
C
N
456
N
O
N
457
N
C
Y
458
N
C
Y
459
N
C
Y
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
N
464
N
O
N
465
N
O
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
N
N
478
S
C
N
479
N
C
N
480
N
O
N
481
N
C
N
482
N
C
N
483
N
C
N
484
N
O
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
Y
1
N
sing
N
2
N
sing
Y
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
Y
9
N
sing
Y
10
N
doub
N
11
N
sing
N
12
N
sing
Y
13
N
sing
Y
14
N
doub
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
doub
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
Y
70
N
sing
Y
71
N
doub
N
72
N
sing
Y
73
N
sing
N
74
N
sing
Y
75
N
doub
N
76
N
sing
Y
77
N
sing
N
78
N
sing
Y
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
Y
242
N
sing
Y
243
N
doub
Y
244
N
doub
N
245
N
sing
Y
246
N
sing
N
247
N
sing
Y
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
doub
N
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
Y
423
N
doub
Y
424
N
sing
Y
425
N
sing
N
426
N
sing
Y
427
N
doub
Y
428
N
sing
Y
429
N
sing
N
430
N
sing
Y
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
doub
N
435
N
sing
Y
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
Y
451
N
doub
Y
452
N
sing
Y
453
N
sing
N
454
N
sing
Y
455
N
doub
N
456
N
sing
Y
457
N
doub
N
458
N
sing
Y
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
doub
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
50
4509
4515
10.1021/jm070482q
17696515
Potent new antiviral compound shows similar inhibition and structural interactions with drug resistant mutants and wild type HIV-1 protease.
2007
10.2210/pdb2qd7/pdb
pdb_00002qd7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
CCD
2003-07-16
MAR CCD 165 mm
SI 220 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.99997
1.0
1.000
1.0
22-ID
APS
0.99997
1.000
SYNCHROTRON
APS BEAMLINE 22-ID
10712.623
Protease
3.4.23.16
Q7K, L33I, L63I, C67A, C95A, V82A
2
man
polymer
94.971
PHOSPHATE ION
2
syn
non-polymer
78.133
DIMETHYL SULFOXIDE
2
syn
non-polymer
92.094
GLYCEROL
2
syn
non-polymer
576.658
(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(2S,3R)-3-HYDROXY-4-(N-ISOBUTYLBENZO[D][1,3]DIOXOLE-5-SULFONAMIDO)-1-PHENYLBUTAN-2-YLCARBAMATE
1
syn
non-polymer
18.015
water
222
nat
water
no
no
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT
PANIIGRNLLTQIGATLNF
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT
PANIIGRNLLTQIGATLNF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Escherichia
Escherichia coli
sample
11676
Human immunodeficiency virus 1
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
plasmid
pET11a
1
2.14
42.60
VAPOR DIFFUSION, HANGING DROP
5.0
25mM citrate phosphate, 10% (w/v) sodium chloride, 6-7% (v/v) dimethylsulfoxide (DMSO), pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
chem_comp
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Non-polymer description
Version format compliance
Refinement description
Database references
Derived calculations
Structure summary
Data collection
Refinement description
1
0
2008-04-22
1
1
2011-07-13
1
2
2017-10-18
1
3
2021-11-10
1
4
2023-10-25
_software.name
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Wide Type with the same inhibitor
Mutant D30N with the same inhibitor
Mutant I50V with the same inhibitor
Mutant I84V with the same inhibitor
RCSB
Y
PDBJ
2007-06-20
REL
REL
PO4
PHOSPHATE ION
DMS
DIMETHYL SULFOXIDE
GOL
GLYCEROL
065
(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(2S,3R)-3-HYDROXY-4-(N-ISOBUTYLBENZO[D][1,3]DIOXOLE-5-SULFONAMIDO)-1-PHENYLBUTAN-2-YLCARBAMATE
HOH
water
2IDW
PDB
experimental model
PO4
701
2
PO4
PO4
701
A
DMS
901
3
DMS
DMS
901
A
DMS
902
3
DMS
DMS
902
A
GOL
802
4
GOL
GOL
802
A
PO4
703
2
PO4
PO4
703
B
065
404
5
065
065
404
B
GOL
801
4
GOL
GOL
801
B
HOH
1001
6
HOH
HOH
903
A
HOH
1002
6
HOH
HOH
904
A
HOH
1003
6
HOH
HOH
905
A
HOH
1005
6
HOH
HOH
906
A
HOH
1008
6
HOH
HOH
907
A
HOH
1009
6
HOH
HOH
908
A
HOH
1012
6
HOH
HOH
909
A
HOH
1016
6
HOH
HOH
910
A
HOH
1017
6
HOH
HOH
911
A
HOH
1018
6
HOH
HOH
912
A
HOH
1019
6
HOH
HOH
913
A
HOH
1021
6
HOH
HOH
914
A
HOH
1023
6
HOH
HOH
915
A
HOH
1025
6
HOH
HOH
916
A
HOH
1027
6
HOH
HOH
917
A
HOH
1028
6
HOH
HOH
918
A
HOH
1029
6
HOH
HOH
919
A
HOH
1031
6
HOH
HOH
920
A
HOH
1032
6
HOH
HOH
921
A
HOH
1033
6
HOH
HOH
922
A
HOH
1035
6
HOH
HOH
923
A
HOH
1036
6
HOH
HOH
924
A
HOH
1037
6
HOH
HOH
925
A
HOH
1038
6
HOH
HOH
926
A
HOH
1042
6
HOH
HOH
927
A
HOH
1043
6
HOH
HOH
928
A
HOH
1044
6
HOH
HOH
929
A
HOH
1045
6
HOH
HOH
930
A
HOH
1047
6
HOH
HOH
931
A
HOH
1048
6
HOH
HOH
932
A
HOH
1058
6
HOH
HOH
933
A
HOH
1061
6
HOH
HOH
934
A
HOH
1062
6
HOH
HOH
935
A
HOH
1068
6
HOH
HOH
936
A
HOH
1069
6
HOH
HOH
937
A
HOH
1071
6
HOH
HOH
938
A
HOH
1075
6
HOH
HOH
939
A
HOH
1077
6
HOH
HOH
940
A
HOH
1078
6
HOH
HOH
941
A
HOH
1079
6
HOH
HOH
942
A
HOH
1081
6
HOH
HOH
943
A
HOH
1083
6
HOH
HOH
944
A
HOH
1087
6
HOH
HOH
945
A
HOH
1090
6
HOH
HOH
946
A
HOH
1092
6
HOH
HOH
947
A
HOH
1093
6
HOH
HOH
948
A
HOH
1094
6
HOH
HOH
949
A
HOH
1095
6
HOH
HOH
950
A
HOH
1096
6
HOH
HOH
951
A
HOH
1097
6
HOH
HOH
952
A
HOH
1102
6
HOH
HOH
953
A
HOH
1106
6
HOH
HOH
954
A
HOH
1107
6
HOH
HOH
955
A
HOH
1108
6
HOH
HOH
956
A
HOH
1109
6
HOH
HOH
957
A
HOH
1111
6
HOH
HOH
958
A
HOH
1112
6
HOH
HOH
959
A
HOH
1113
6
HOH
HOH
960
A
HOH
1114
6
HOH
HOH
961
A
HOH
1116
6
HOH
HOH
962
A
HOH
1117
6
HOH
HOH
963
A
HOH
1119
6
HOH
HOH
964
A
HOH
1120
6
HOH
HOH
965
A
HOH
1122
6
HOH
HOH
966
A
HOH
1123
6
HOH
HOH
967
A
HOH
1124
6
HOH
HOH
968
A
HOH
1125
6
HOH
HOH
969
A
HOH
1127
6
HOH
HOH
970
A
HOH
1128
6
HOH
HOH
971
A
HOH
1129
6
HOH
HOH
972
A
HOH
1130
6
HOH
HOH
973
A
HOH
1132
6
HOH
HOH
974
A
HOH
1133
6
HOH
HOH
975
A
HOH
1135
6
HOH
HOH
976
A
HOH
1142
6
HOH
HOH
977
A
HOH
1147
6
HOH
HOH
978
A
HOH
1149
6
HOH
HOH
979
A
HOH
1150
6
HOH
HOH
980
A
HOH
1151
6
HOH
HOH
981
A
HOH
1154
6
HOH
HOH
982
A
HOH
1156
6
HOH
HOH
983
A
HOH
1160
6
HOH
HOH
984
A
HOH
1161
6
HOH
HOH
985
A
HOH
1165
6
HOH
HOH
986
A
HOH
1167
6
HOH
HOH
987
A
HOH
1168
6
HOH
HOH
988
A
HOH
1169
6
HOH
HOH
989
A
HOH
1170
6
HOH
HOH
990
A
HOH
1171
6
HOH
HOH
991
A
HOH
1172
6
HOH
HOH
992
A
HOH
1173
6
HOH
HOH
993
A
HOH
1174
6
HOH
HOH
994
A
HOH
1175
6
HOH
HOH
995
A
HOH
1176
6
HOH
HOH
996
A
HOH
1177
6
HOH
HOH
997
A
HOH
1181
6
HOH
HOH
998
A
HOH
1182
6
HOH
HOH
999
A
HOH
1183
6
HOH
HOH
1000
A
HOH
1184
6
HOH
HOH
1001
A
HOH
1185
6
HOH
HOH
1002
A
HOH
1186
6
HOH
HOH
1003
A
HOH
1187
6
HOH
HOH
1004
A
HOH
1189
6
HOH
HOH
1005
A
HOH
1190
6
HOH
HOH
1006
A
HOH
1191
6
HOH
HOH
1007
A
HOH
1192
6
HOH
HOH
1008
A
HOH
1193
6
HOH
HOH
1009
A
HOH
1194
6
HOH
HOH
1010
A
HOH
1197
6
HOH
HOH
1011
A
HOH
1201
6
HOH
HOH
1012
A
HOH
1202
6
HOH
HOH
1013
A
HOH
1203
6
HOH
HOH
1014
A
HOH
1205
6
HOH
HOH
1015
A
HOH
1208
6
HOH
HOH
1016
A
HOH
1210
6
HOH
HOH
1017
A
HOH
1214
6
HOH
HOH
1018
A
HOH
1217
6
HOH
HOH
1019
A
HOH
1220
6
HOH
HOH
1020
A
HOH
1221
6
HOH
HOH
1021
A
HOH
1004
6
HOH
HOH
802
B
HOH
1006
6
HOH
HOH
803
B
HOH
1007
6
HOH
HOH
804
B
HOH
1010
6
HOH
HOH
805
B
HOH
1011
6
HOH
HOH
806
B
HOH
1013
6
HOH
HOH
807
B
HOH
1014
6
HOH
HOH
808
B
HOH
1015
6
HOH
HOH
809
B
HOH
1020
6
HOH
HOH
810
B
HOH
1022
6
HOH
HOH
811
B
HOH
1024
6
HOH
HOH
812
B
HOH
1026
6
HOH
HOH
813
B
HOH
1030
6
HOH
HOH
814
B
HOH
1034
6
HOH
HOH
815
B
HOH
1039
6
HOH
HOH
816
B
HOH
1040
6
HOH
HOH
817
B
HOH
1041
6
HOH
HOH
818
B
HOH
1046
6
HOH
HOH
819
B
HOH
1049
6
HOH
HOH
820
B
HOH
1050
6
HOH
HOH
821
B
HOH
1051
6
HOH
HOH
822
B
HOH
1052
6
HOH
HOH
823
B
HOH
1053
6
HOH
HOH
824
B
HOH
1054
6
HOH
HOH
825
B
HOH
1055
6
HOH
HOH
826
B
HOH
1056
6
HOH
HOH
827
B
HOH
1057
6
HOH
HOH
828
B
HOH
1059
6
HOH
HOH
829
B
HOH
1060
6
HOH
HOH
830
B
HOH
1063
6
HOH
HOH
831
B
HOH
1064
6
HOH
HOH
832
B
HOH
1065
6
HOH
HOH
833
B
HOH
1066
6
HOH
HOH
834
B
HOH
1067
6
HOH
HOH
835
B
HOH
1070
6
HOH
HOH
836
B
HOH
1072
6
HOH
HOH
837
B
HOH
1073
6
HOH
HOH
838
B
HOH
1074
6
HOH
HOH
839
B
HOH
1076
6
HOH
HOH
840
B
HOH
1080
6
HOH
HOH
841
B
HOH
1082
6
HOH
HOH
842
B
HOH
1084
6
HOH
HOH
843
B
HOH
1085
6
HOH
HOH
844
B
HOH
1086
6
HOH
HOH
845
B
HOH
1088
6
HOH
HOH
846
B
HOH
1089
6
HOH
HOH
847
B
HOH
1091
6
HOH
HOH
848
B
HOH
1098
6
HOH
HOH
849
B
HOH
1099
6
HOH
HOH
850
B
HOH
1100
6
HOH
HOH
851
B
HOH
1101
6
HOH
HOH
852
B
HOH
1103
6
HOH
HOH
853
B
HOH
1104
6
HOH
HOH
854
B
HOH
1105
6
HOH
HOH
855
B
HOH
1110
6
HOH
HOH
856
B
HOH
1115
6
HOH
HOH
857
B
HOH
1118
6
HOH
HOH
858
B
HOH
1121
6
HOH
HOH
859
B
HOH
1126
6
HOH
HOH
860
B
HOH
1131
6
HOH
HOH
861
B
HOH
1134
6
HOH
HOH
862
B
HOH
1136
6
HOH
HOH
863
B
HOH
1137
6
HOH
HOH
864
B
HOH
1138
6
HOH
HOH
865
B
HOH
1139
6
HOH
HOH
866
B
HOH
1140
6
HOH
HOH
867
B
HOH
1141
6
HOH
HOH
868
B
HOH
1143
6
HOH
HOH
869
B
HOH
1144
6
HOH
HOH
870
B
HOH
1145
6
HOH
HOH
871
B
HOH
1146
6
HOH
HOH
872
B
HOH
1148
6
HOH
HOH
873
B
HOH
1152
6
HOH
HOH
874
B
HOH
1153
6
HOH
HOH
875
B
HOH
1155
6
HOH
HOH
876
B
HOH
1157
6
HOH
HOH
877
B
HOH
1158
6
HOH
HOH
878
B
HOH
1159
6
HOH
HOH
879
B
HOH
1162
6
HOH
HOH
880
B
HOH
1163
6
HOH
HOH
881
B
HOH
1164
6
HOH
HOH
882
B
HOH
1166
6
HOH
HOH
883
B
HOH
1178
6
HOH
HOH
884
B
HOH
1179
6
HOH
HOH
885
B
HOH
1180
6
HOH
HOH
886
B
HOH
1188
6
HOH
HOH
887
B
HOH
1195
6
HOH
HOH
888
B
HOH
1196
6
HOH
HOH
889
B
HOH
1198
6
HOH
HOH
890
B
HOH
1199
6
HOH
HOH
891
B
HOH
1200
6
HOH
HOH
892
B
HOH
1204
6
HOH
HOH
893
B
HOH
1206
6
HOH
HOH
894
B
HOH
1207
6
HOH
HOH
895
B
HOH
1209
6
HOH
HOH
896
B
HOH
1211
6
HOH
HOH
897
B
HOH
1212
6
HOH
HOH
898
B
HOH
1213
6
HOH
HOH
899
B
HOH
1215
6
HOH
HOH
900
B
HOH
1216
6
HOH
HOH
901
B
HOH
1218
6
HOH
HOH
902
B
HOH
1219
6
HOH
HOH
903
B
HOH
1222
6
HOH
HOH
904
B
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
LYS
7
n
7
LYS
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
VAL
32
n
32
VAL
32
A
ILE
33
n
33
ILE
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
SER
37
n
37
SER
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ARG
41
n
41
ARG
41
A
TRP
42
n
42
TRP
42
A
LYS
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
ILE
63
n
63
ILE
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
ALA
67
n
67
ALA
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
ALA
82
n
82
ALA
82
A
ASN
83
n
83
ASN
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
ALA
95
n
95
ALA
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
PRO
101
n
1
PRO
101
B
GLN
102
n
2
GLN
102
B
ILE
103
n
3
ILE
103
B
THR
104
n
4
THR
104
B
LEU
105
n
5
LEU
105
B
TRP
106
n
6
TRP
106
B
LYS
107
n
7
LYS
107
B
ARG
108
n
8
ARG
108
B
PRO
109
n
9
PRO
109
B
LEU
110
n
10
LEU
110
B
VAL
111
n
11
VAL
111
B
THR
112
n
12
THR
112
B
ILE
113
n
13
ILE
113
B
LYS
114
n
14
LYS
114
B
ILE
115
n
15
ILE
115
B
GLY
116
n
16
GLY
116
B
GLY
117
n
17
GLY
117
B
GLN
118
n
18
GLN
118
B
LEU
119
n
19
LEU
119
B
LYS
120
n
20
LYS
120
B
GLU
121
n
21
GLU
121
B
ALA
122
n
22
ALA
122
B
LEU
123
n
23
LEU
123
B
LEU
124
n
24
LEU
124
B
ASP
125
n
25
ASP
125
B
THR
126
n
26
THR
126
B
GLY
127
n
27
GLY
127
B
ALA
128
n
28
ALA
128
B
ASP
129
n
29
ASP
129
B
ASP
130
n
30
ASP
130
B
THR
131
n
31
THR
131
B
VAL
132
n
32
VAL
132
B
ILE
133
n
33
ILE
133
B
GLU
134
n
34
GLU
134
B
GLU
135
n
35
GLU
135
B
MET
136
n
36
MET
136
B
SER
137
n
37
SER
137
B
LEU
138
n
38
LEU
138
B
PRO
139
n
39
PRO
139
B
GLY
140
n
40
GLY
140
B
ARG
141
n
41
ARG
141
B
TRP
142
n
42
TRP
142
B
LYS
143
n
43
LYS
143
B
PRO
144
n
44
PRO
144
B
LYS
145
n
45
LYS
145
B
MET
146
n
46
MET
146
B
ILE
147
n
47
ILE
147
B
GLY
148
n
48
GLY
148
B
GLY
149
n
49
GLY
149
B
ILE
150
n
50
ILE
150
B
GLY
151
n
51
GLY
151
B
GLY
152
n
52
GLY
152
B
PHE
153
n
53
PHE
153
B
ILE
154
n
54
ILE
154
B
LYS
155
n
55
LYS
155
B
VAL
156
n
56
VAL
156
B
ARG
157
n
57
ARG
157
B
GLN
158
n
58
GLN
158
B
TYR
159
n
59
TYR
159
B
ASP
160
n
60
ASP
160
B
GLN
161
n
61
GLN
161
B
ILE
162
n
62
ILE
162
B
ILE
163
n
63
ILE
163
B
ILE
164
n
64
ILE
164
B
GLU
165
n
65
GLU
165
B
ILE
166
n
66
ILE
166
B
ALA
167
n
67
ALA
167
B
GLY
168
n
68
GLY
168
B
HIS
169
n
69
HIS
169
B
LYS
170
n
70
LYS
170
B
ALA
171
n
71
ALA
171
B
ILE
172
n
72
ILE
172
B
GLY
173
n
73
GLY
173
B
THR
174
n
74
THR
174
B
VAL
175
n
75
VAL
175
B
LEU
176
n
76
LEU
176
B
VAL
177
n
77
VAL
177
B
GLY
178
n
78
GLY
178
B
PRO
179
n
79
PRO
179
B
THR
180
n
80
THR
180
B
PRO
181
n
81
PRO
181
B
ALA
182
n
82
ALA
182
B
ASN
183
n
83
ASN
183
B
ILE
184
n
84
ILE
184
B
ILE
185
n
85
ILE
185
B
GLY
186
n
86
GLY
186
B
ARG
187
n
87
ARG
187
B
ASN
188
n
88
ASN
188
B
LEU
189
n
89
LEU
189
B
LEU
190
n
90
LEU
190
B
THR
191
n
91
THR
191
B
GLN
192
n
92
GLN
192
B
ILE
193
n
93
ILE
193
B
GLY
194
n
94
GLY
194
B
ALA
195
n
95
ALA
195
B
THR
196
n
96
THR
196
B
LEU
197
n
97
LEU
197
B
ASN
198
n
98
ASN
198
B
PHE
199
n
99
PHE
199
B
0.1182
0.1307
0.1164
0.1288
0.1514
0.1639
3044
3550
5.0
5.0
60872
author_and_software_defined_assembly
PISA
2
dimeric
5070
-32.9
9830
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
3
A
N
ILE
3
B
O
LEU
197
B
O
LEU
97
B
O
THR
196
B
O
THR
96
A
N
ASN
98
A
N
ASN
98
A
N
LEU
97
A
N
LEU
97
B
O
ILE
103
B
O
ILE
3
A
N
LYS
43
A
N
LYS
43
A
O
GLN
58
A
O
GLN
58
A
N
ILE
66
A
N
ILE
66
A
O
HIS
69
A
O
HIS
69
A
O
LEU
76
A
O
LEU
76
A
N
ILE
33
A
N
ILE
33
A
N
VAL
32
A
N
VAL
32
A
O
ILE
84
A
O
ILE
84
A
O
ILE
85
A
O
ILE
85
A
N
LEU
23
A
N
LEU
23
A
O
LYS
20
A
O
LYS
20
A
N
ILE
13
A
N
ILE
13
A
N
LYS
14
A
N
LYS
14
A
O
GLU
65
A
O
GLU
65
B
N
LYS
143
B
N
LYS
43
B
O
GLN
158
B
O
GLN
58
B
N
ILE
166
B
N
ILE
66
B
O
HIS
169
B
O
HIS
69
B
O
LEU
176
B
O
LEU
76
B
N
ILE
133
B
N
ILE
33
B
N
VAL
132
B
N
VAL
32
B
O
ILE
184
B
O
ILE
84
B
O
ILE
185
B
O
ILE
85
B
N
LEU
123
B
N
LEU
23
B
O
LYS
120
B
O
LYS
20
B
N
ILE
113
B
N
ILE
13
B
N
LYS
114
B
N
LYS
14
B
O
GLU
165
B
O
GLU
65
1
18.36
2.70
111.60
129.96
A
A
A
CB
CA
C
THR
THR
THR
4
4
4
B
B
B
N
1
15.89
2.10
109.00
124.89
A
A
A
CA
CB
OG1
THR
THR
THR
4
4
4
B
B
B
N
1
-15.61
1.40
112.40
96.79
A
A
A
CA
CB
CG2
THR
THR
THR
4
4
4
B
B
B
N
1
3.50
0.50
120.30
123.80
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
8
8
8
A
A
A
N
1
-3.84
0.50
120.30
116.46
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
8
8
8
A
A
A
N
1
11.98
1.40
123.60
135.58
B
B
B
CD
NE
CZ
ARG
ARG
ARG
108
108
108
B
B
B
N
1
7.93
0.50
120.30
128.23
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
108
108
108
B
B
B
N
1
-3.41
0.50
120.30
116.89
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
108
108
108
B
B
B
N
1
10.92
1.40
123.60
134.52
B
B
B
CD
NE
CZ
ARG
ARG
ARG
141
141
141
B
B
B
N
1
5.48
0.50
120.30
125.78
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
141
141
141
B
B
B
N
1
-3.61
0.50
120.30
116.69
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
141
141
141
B
B
B
N
1
5.71
0.90
118.30
124.01
B
B
B
CB
CG
OD1
ASP
ASP
ASP
160
160
160
N
1
3.46
0.50
120.30
123.76
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
187
187
187
N
0.1639
0.1288
0.1307
1.11
10.00
17283
3550
71010
70950
22172
5.0
97.1
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
2IDW
ENGH & HUBER
22
1623.07
1736.58
1.11
10.00
222
1800
70
0
1508
0.015
0.034
0.000
0.0300
0.042
0.042
0.030
0.005
0.033
0.076
6.1
1.11
50
2QD7
76186
73051
0.086
1
18.2
6.8
97.4
0.23
1.11
1.15
4.0
5816
1
2.1
80.3
model building
SHELX
refinement
SHELXL-97
data collection
MAR345
data reduction
HKL-2000
data scaling
HKL-2000
phasing
AMoRE
HIV-1 Protease Mutant V82A with potent Antiviral inhibitor GRL-98065
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
2
N
N
5
N
N
4
N
N
6
N
N
6
N
N
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
1
6
A
GLN
92
A
GLN
92
HELX_P
A
GLY
94
A
GLY
94
5
2
3
B
GLY
186
B
GLY
86
HELX_P
B
THR
191
B
THR
91
1
3
6
HYDROLASE
HIV-1 protease mutant V82A, protease inhibitor, HYDROLASE
POL_HV1BR
UNP
1
501
P03367
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
501
599
2QD7
1
99
P03367
A
1
1
99
501
599
2QD7
101
199
P03367
B
1
1
99
1
GLN
engineered mutation
LYS
7
2QD7
A
P03367
UNP
507
7
1
LEU
engineered mutation
ILE
33
2QD7
A
P03367
UNP
533
33
1
LEU
engineered mutation
ILE
63
2QD7
A
P03367
UNP
563
63
1
CYS
engineered mutation
ALA
67
2QD7
A
P03367
UNP
567
67
1
VAL
engineered mutation
ALA
82
2QD7
A
P03367
UNP
582
82
1
CYS
engineered mutation
ALA
95
2QD7
A
P03367
UNP
595
95
2
GLN
engineered mutation
LYS
107
2QD7
B
P03367
UNP
507
7
2
LEU
engineered mutation
ILE
133
2QD7
B
P03367
UNP
533
33
2
LEU
engineered mutation
ILE
163
2QD7
B
P03367
UNP
563
63
2
CYS
engineered mutation
ALA
167
2QD7
B
P03367
UNP
567
67
2
VAL
engineered mutation
ALA
182
2QD7
B
P03367
UNP
582
82
2
CYS
engineered mutation
ALA
195
2QD7
B
P03367
UNP
595
95
4
8
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
2
A
GLN
2
A
ILE
3
A
ILE
3
B
THR
196
B
THR
96
B
ASN
198
B
ASN
98
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
B
GLN
102
B
GLN
2
B
ILE
103
B
ILE
3
A
LYS
43
A
LYS
43
A
GLY
49
A
GLY
49
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
HIS
69
A
HIS
69
A
GLY
78
A
GLY
78
A
THR
31
A
THR
31
A
GLU
34
A
GLU
34
A
ILE
84
A
ILE
84
A
ILE
85
A
ILE
85
A
GLN
18
A
GLN
18
A
LEU
24
A
LEU
24
A
LEU
10
A
LEU
10
A
ILE
15
A
ILE
15
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
B
TRP
142
B
TRP
42
B
GLY
149
B
GLY
49
B
GLY
152
B
GLY
52
B
ILE
166
B
ILE
66
B
HIS
169
B
HIS
69
B
VAL
177
B
VAL
77
B
VAL
132
B
VAL
32
B
ILE
133
B
ILE
33
B
ILE
184
B
ILE
84
B
ILE
185
B
ILE
85
B
GLN
118
B
GLN
18
B
LEU
124
B
LEU
24
B
LEU
110
B
LEU
10
B
ILE
115
B
ILE
15
B
GLY
152
B
GLY
52
B
ILE
166
B
ILE
66
BINDING SITE FOR RESIDUE PO4 A 701
A
PO4
701
Software
9
BINDING SITE FOR RESIDUE PO4 B 703
B
PO4
703
Software
6
BINDING SITE FOR RESIDUE 065 B 404
B
065
404
Software
17
BINDING SITE FOR RESIDUE DMS A 901
A
DMS
901
Software
5
BINDING SITE FOR RESIDUE DMS A 902
A
DMS
902
Software
5
BINDING SITE FOR RESIDUE GOL B 801
B
GOL
801
Software
6
BINDING SITE FOR RESIDUE GOL A 802
A
GOL
802
Software
7
A
LYS
14
A
LYS
14
9
1_555
A
ILE
15
A
ILE
15
9
1_555
A
GLY
16
A
GLY
16
9
1_555
A
GLY
17
A
GLY
17
9
1_555
A
HOH
904
J
HOH
9
1_555
A
HOH
905
J
HOH
9
1_555
A
HOH
934
J
HOH
9
1_555
B
LYS
114
B
LYS
14
9
1_455
B
GLY
117
B
GLY
17
9
1_455
A
HOH
972
J
HOH
6
1_555
B
PRO
101
B
PRO
1
6
1_555
B
ARG
157
B
ARG
57
6
2_665
B
HIS
169
B
HIS
69
6
1_555
B
HOH
824
K
HOH
6
1_555
B
HOH
883
K
HOH
6
1_555
A
ASP
25
A
ASP
25
17
1_555
A
GLY
27
A
GLY
27
17
1_555
A
ALA
28
A
ALA
28
17
1_555
A
ASP
30
A
ASP
30
17
1_555
A
GLY
48
A
GLY
48
17
1_555
A
GLY
49
A
GLY
49
17
1_555
A
ILE
84
A
ILE
84
17
1_555
B
ASP
125
B
ASP
25
17
1_555
B
GLY
127
B
GLY
27
17
1_555
B
ALA
128
B
ALA
28
17
1_555
B
ASP
129
B
ASP
29
17
1_555
B
ASP
130
B
ASP
30
17
1_555
B
ILE
147
B
ILE
47
17
1_555
B
GLY
148
B
GLY
48
17
1_555
B
GLY
149
B
GLY
49
17
1_555
B
ILE
150
B
ILE
50
17
1_555
B
HOH
803
K
HOH
17
1_555
A
PRO
1
A
PRO
1
5
1_555
A
LYS
55
A
LYS
55
5
2_565
B
HIS
169
B
HIS
69
5
4_456
B
LYS
170
B
LYS
70
5
4_456
B
HOH
859
K
HOH
5
4_456
A
PRO
39
A
PRO
39
5
1_555
A
GLY
40
A
GLY
40
5
1_555
A
HOH
962
J
HOH
5
1_555
A
HOH
1001
J
HOH
5
1_555
B
SER
137
B
SER
37
5
1_455
B
LEU
110
B
LEU
10
6
1_555
B
THR
112
B
THR
12
6
1_555
B
ARG
141
B
ARG
41
6
2_665
B
TRP
142
B
TRP
42
6
2_665
B
HOH
802
K
HOH
6
1_555
B
HOH
823
K
HOH
6
1_555
A
THR
4
A
THR
4
7
1_555
A
LEU
5
A
LEU
5
7
1_555
A
TRP
6
A
TRP
6
7
1_555
A
HOH
903
J
HOH
7
1_555
B
THR
191
B
THR
91
7
1_555
B
ALA
195
B
ALA
95
7
1_555
B
THR
196
B
THR
96
7
1_555
19
P 21 21 21