0.01265
0.00730
0.00000
0.00000
0.01460
0.00000
0.00000
0.00000
0.00552
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.000
90.000
120.000
79.070
79.070
181.260
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of histone acetyltransferase HPA2 and related acetyltransferase (NP_600742.1) from Corynebacterium glutamicum ATCC 13032 at 1.90 A resolution
10.2210/pdb2qec/pdb
pdb_00002qec
100
1
100
2
Flat mirror (vertical focusing)
CCD
2007-01-18
MARMOSAIC 325 mm CCD
Flat mirror (vertical focusing)
CCD
2007-01-07
MARMOSAIC 325 mm CCD
Single crystal Si(111) bent (horizontal focusing)
SINGLE WAVELENGTH
M
x-ray
1
Single crystal Si(111) bent (horizontal focusing)
MAD
M
x-ray
1
0.91162
1.0
0.97917
1.0
0.91837
1.0
0.97886
1.0
BL11-1
SSRL
0.91162
SYNCHROTRON
SSRL BEAMLINE BL11-1
BL11-1
SSRL
0.97917, 0.91837, 0.97886
SYNCHROTRON
SSRL BEAMLINE BL11-1
22255.531
Histone acetyltransferase HPA2 and related acetyltransferases
A29T
1
man
polymer
62.068
1,2-ETHANEDIOL
9
syn
non-polymer
18.015
water
151
nat
water
GCN5-related N-acetyltransferase
no
yes
G(MSE)SPTVLPATQADFPKIVDVLVEAFANDPTFLRWIPQPDPGSAKLRALFELQIEKQYAVAGNIDVARDSEGEIVGV
ALWDRPDGNHSAKDQAA(MSE)LPRLVSIFGIKAAQVAWTDLSSARFHPKFPHWYLYTVATSSSARGTGVGSALLNHGIA
RAGDEAIYLEATSTRAAQLYNRLGFVPLGYIPSDDDGTPELA(MSE)WKPPA(MSE)PTV
GMSPTVLPATQADFPKIVDVLVEAFANDPTFLRWIPQPDPGSAKLRALFELQIEKQYAVAGNIDVARDSEGEIVGVALWD
RPDGNHSAKDQAAMLPRLVSIFGIKAAQVAWTDLSSARFHPKFPHWYLYTVATSSSARGTGVGSALLNHGIARAGDEAIY
LEATSTRAAQLYNRLGFVPLGYIPSDDDGTPELAMWKPPAMPTV
A
373193
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Corynebacterium
Corynebacterium glutamicum
DSM 20300, JCM 1318, LMG 3730, NCIMB 10025
Escherichia
sample
NP_600742.1, Cgl1527, cg1722
196627
Corynebacterium glutamicum ATCC 13032
562
Escherichia coli
HK100
Plasmid
speedET
2
3.67
66.50
DATA FROM A SE-MET CONTAINING CRYSTAL IN SPACEGROUP P6(2)22 WAS USED FOR THE MAD PHASING EXPERIMENTS AT 2.30 ANGSTROM RESOLUTION. THIS MAD STRUCTURE WAS USED AS A MOLECULAR REPLACEMENT MODEL TO PHASE THIS STRUCTURE AT 1.90 ANGSTROM RESOLUTION IN THE P6(5)22 SPACEGROUP.
VAPOR DIFFUSION, SITTING DROP
4.6
NANODROP, 8.0% PEG 4000, 0.1M Acetate pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
VAPOR DIFFUSION, SITTING DROP
8.5
NANODROP, 0.2M Li2SO4, 40.0% PEG 400, 0.1M Tris-HCl pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
software
pdbx_struct_assembly_auth_evidence
database_2
struct_conn
struct_ref_seq_dif
struct_site
struct_ref_seq_dif
repository
Initial release
Version format compliance
Advisory
Derived calculations
Version format compliance
Refinement description
Author supporting evidence
Database references
Derived calculations
Database references
1
0
2007-07-10
1
1
2008-05-01
1
2
2011-07-13
1
3
2017-10-18
1
4
2017-10-25
1
5
2021-10-20
1
6
2023-01-25
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_ref_seq_dif.details
Y
RCSB
Y
RCSB
2007-06-25
REL
REL
EDO
1,2-ETHANEDIOL
HOH
water
1. THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG
MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE
LEAVING ONLY A GLYCINE, FOLLOWED BY THE TARGET SEQUENCE.
2. THE CONSTRUCT WAS ENGINEERED WITH THE FOLLOWING MUTATION:
A29T.
EDO
1
2
EDO
EDO
204
A
EDO
2
2
EDO
EDO
205
A
EDO
3
2
EDO
EDO
206
A
EDO
4
2
EDO
EDO
207
A
EDO
5
2
EDO
EDO
208
A
EDO
6
2
EDO
EDO
209
A
EDO
7
2
EDO
EDO
210
A
EDO
8
2
EDO
EDO
211
A
EDO
9
2
EDO
EDO
212
A
HOH
10
3
HOH
HOH
213
A
HOH
11
3
HOH
HOH
214
A
HOH
12
3
HOH
HOH
215
A
HOH
13
3
HOH
HOH
216
A
HOH
14
3
HOH
HOH
217
A
HOH
15
3
HOH
HOH
218
A
HOH
16
3
HOH
HOH
219
A
HOH
17
3
HOH
HOH
220
A
HOH
18
3
HOH
HOH
221
A
HOH
19
3
HOH
HOH
222
A
HOH
20
3
HOH
HOH
223
A
HOH
21
3
HOH
HOH
224
A
HOH
22
3
HOH
HOH
225
A
HOH
23
3
HOH
HOH
226
A
HOH
24
3
HOH
HOH
227
A
HOH
25
3
HOH
HOH
228
A
HOH
26
3
HOH
HOH
229
A
HOH
27
3
HOH
HOH
230
A
HOH
28
3
HOH
HOH
231
A
HOH
29
3
HOH
HOH
232
A
HOH
30
3
HOH
HOH
233
A
HOH
31
3
HOH
HOH
234
A
HOH
32
3
HOH
HOH
235
A
HOH
33
3
HOH
HOH
236
A
HOH
34
3
HOH
HOH
237
A
HOH
35
3
HOH
HOH
238
A
HOH
36
3
HOH
HOH
239
A
HOH
37
3
HOH
HOH
240
A
HOH
38
3
HOH
HOH
241
A
HOH
39
3
HOH
HOH
242
A
HOH
40
3
HOH
HOH
243
A
HOH
41
3
HOH
HOH
244
A
HOH
42
3
HOH
HOH
245
A
HOH
43
3
HOH
HOH
246
A
HOH
44
3
HOH
HOH
247
A
HOH
45
3
HOH
HOH
248
A
HOH
46
3
HOH
HOH
249
A
HOH
47
3
HOH
HOH
250
A
HOH
48
3
HOH
HOH
251
A
HOH
49
3
HOH
HOH
252
A
HOH
50
3
HOH
HOH
253
A
HOH
51
3
HOH
HOH
254
A
HOH
52
3
HOH
HOH
255
A
HOH
53
3
HOH
HOH
256
A
HOH
54
3
HOH
HOH
257
A
HOH
55
3
HOH
HOH
258
A
HOH
56
3
HOH
HOH
259
A
HOH
57
3
HOH
HOH
260
A
HOH
58
3
HOH
HOH
261
A
HOH
59
3
HOH
HOH
262
A
HOH
60
3
HOH
HOH
263
A
HOH
61
3
HOH
HOH
264
A
HOH
62
3
HOH
HOH
265
A
HOH
63
3
HOH
HOH
266
A
HOH
64
3
HOH
HOH
267
A
HOH
65
3
HOH
HOH
268
A
HOH
66
3
HOH
HOH
269
A
HOH
67
3
HOH
HOH
270
A
HOH
68
3
HOH
HOH
271
A
HOH
69
3
HOH
HOH
272
A
HOH
70
3
HOH
HOH
273
A
HOH
71
3
HOH
HOH
274
A
HOH
72
3
HOH
HOH
275
A
HOH
73
3
HOH
HOH
276
A
HOH
74
3
HOH
HOH
277
A
HOH
75
3
HOH
HOH
278
A
HOH
76
3
HOH
HOH
279
A
HOH
77
3
HOH
HOH
280
A
HOH
78
3
HOH
HOH
281
A
HOH
79
3
HOH
HOH
282
A
HOH
80
3
HOH
HOH
283
A
HOH
81
3
HOH
HOH
284
A
HOH
82
3
HOH
HOH
285
A
HOH
83
3
HOH
HOH
286
A
HOH
84
3
HOH
HOH
287
A
HOH
85
3
HOH
HOH
288
A
HOH
86
3
HOH
HOH
289
A
HOH
87
3
HOH
HOH
290
A
HOH
88
3
HOH
HOH
291
A
HOH
89
3
HOH
HOH
292
A
HOH
90
3
HOH
HOH
293
A
HOH
91
3
HOH
HOH
294
A
HOH
92
3
HOH
HOH
295
A
HOH
93
3
HOH
HOH
296
A
HOH
94
3
HOH
HOH
297
A
HOH
95
3
HOH
HOH
298
A
HOH
96
3
HOH
HOH
299
A
HOH
97
3
HOH
HOH
300
A
HOH
98
3
HOH
HOH
301
A
HOH
99
3
HOH
HOH
302
A
HOH
100
3
HOH
HOH
303
A
HOH
101
3
HOH
HOH
304
A
HOH
102
3
HOH
HOH
305
A
HOH
103
3
HOH
HOH
306
A
HOH
104
3
HOH
HOH
307
A
HOH
105
3
HOH
HOH
308
A
HOH
106
3
HOH
HOH
309
A
HOH
107
3
HOH
HOH
310
A
HOH
108
3
HOH
HOH
311
A
HOH
109
3
HOH
HOH
312
A
HOH
110
3
HOH
HOH
313
A
HOH
111
3
HOH
HOH
314
A
HOH
112
3
HOH
HOH
315
A
HOH
113
3
HOH
HOH
316
A
HOH
114
3
HOH
HOH
317
A
HOH
115
3
HOH
HOH
318
A
HOH
116
3
HOH
HOH
319
A
HOH
117
3
HOH
HOH
320
A
HOH
118
3
HOH
HOH
321
A
HOH
119
3
HOH
HOH
322
A
HOH
120
3
HOH
HOH
323
A
HOH
121
3
HOH
HOH
324
A
HOH
122
3
HOH
HOH
325
A
HOH
123
3
HOH
HOH
326
A
HOH
124
3
HOH
HOH
327
A
HOH
125
3
HOH
HOH
328
A
HOH
126
3
HOH
HOH
329
A
HOH
127
3
HOH
HOH
330
A
HOH
128
3
HOH
HOH
331
A
HOH
129
3
HOH
HOH
332
A
HOH
130
3
HOH
HOH
333
A
HOH
131
3
HOH
HOH
334
A
HOH
132
3
HOH
HOH
335
A
HOH
133
3
HOH
HOH
336
A
HOH
134
3
HOH
HOH
337
A
HOH
135
3
HOH
HOH
338
A
HOH
136
3
HOH
HOH
339
A
HOH
137
3
HOH
HOH
340
A
HOH
138
3
HOH
HOH
341
A
HOH
139
3
HOH
HOH
342
A
HOH
140
3
HOH
HOH
343
A
HOH
141
3
HOH
HOH
344
A
HOH
142
3
HOH
HOH
345
A
HOH
143
3
HOH
HOH
346
A
HOH
144
3
HOH
HOH
347
A
HOH
145
3
HOH
HOH
348
A
HOH
146
3
HOH
HOH
349
A
HOH
147
3
HOH
HOH
350
A
HOH
148
3
HOH
HOH
351
A
HOH
149
3
HOH
HOH
352
A
HOH
150
3
HOH
HOH
353
A
HOH
151
3
HOH
HOH
354
A
HOH
152
3
HOH
HOH
355
A
HOH
153
3
HOH
HOH
356
A
HOH
154
3
HOH
HOH
357
A
HOH
155
3
HOH
HOH
358
A
HOH
156
3
HOH
HOH
359
A
HOH
157
3
HOH
HOH
360
A
HOH
158
3
HOH
HOH
361
A
HOH
159
3
HOH
HOH
362
A
HOH
160
3
HOH
HOH
363
A
n
1
0
A
MSE
1
n
2
MSE
1
A
SER
2
n
3
SER
2
A
PRO
3
n
4
PRO
3
A
THR
4
n
5
THR
4
A
VAL
5
n
6
VAL
5
A
LEU
6
n
7
LEU
6
A
PRO
7
n
8
PRO
7
A
ALA
8
n
9
ALA
8
A
THR
9
n
10
THR
9
A
GLN
10
n
11
GLN
10
A
ALA
11
n
12
ALA
11
A
ASP
12
n
13
ASP
12
A
PHE
13
n
14
PHE
13
A
PRO
14
n
15
PRO
14
A
LYS
15
n
16
LYS
15
A
ILE
16
n
17
ILE
16
A
VAL
17
n
18
VAL
17
A
ASP
18
n
19
ASP
18
A
VAL
19
n
20
VAL
19
A
LEU
20
n
21
LEU
20
A
VAL
21
n
22
VAL
21
A
GLU
22
n
23
GLU
22
A
ALA
23
n
24
ALA
23
A
PHE
24
n
25
PHE
24
A
ALA
25
n
26
ALA
25
A
ASN
26
n
27
ASN
26
A
ASP
27
n
28
ASP
27
A
PRO
28
n
29
PRO
28
A
THR
29
n
30
THR
29
A
PHE
30
n
31
PHE
30
A
LEU
31
n
32
LEU
31
A
ARG
32
n
33
ARG
32
A
TRP
33
n
34
TRP
33
A
ILE
34
n
35
ILE
34
A
PRO
35
n
36
PRO
35
A
GLN
36
n
37
GLN
36
A
PRO
37
n
38
PRO
37
A
ASP
38
n
39
ASP
38
A
PRO
39
n
40
PRO
39
A
GLY
40
n
41
GLY
40
A
SER
41
n
42
SER
41
A
ALA
42
n
43
ALA
42
A
LYS
43
n
44
LYS
43
A
LEU
44
n
45
LEU
44
A
ARG
45
n
46
ARG
45
A
ALA
46
n
47
ALA
46
A
LEU
47
n
48
LEU
47
A
PHE
48
n
49
PHE
48
A
GLU
49
n
50
GLU
49
A
LEU
50
n
51
LEU
50
A
GLN
51
n
52
GLN
51
A
ILE
52
n
53
ILE
52
A
GLU
53
n
54
GLU
53
A
LYS
54
n
55
LYS
54
A
GLN
55
n
56
GLN
55
A
TYR
56
n
57
TYR
56
A
ALA
57
n
58
ALA
57
A
VAL
58
n
59
VAL
58
A
ALA
59
n
60
ALA
59
A
GLY
60
n
61
GLY
60
A
ASN
61
n
62
ASN
61
A
ILE
62
n
63
ILE
62
A
ASP
63
n
64
ASP
63
A
VAL
64
n
65
VAL
64
A
ALA
65
n
66
ALA
65
A
ARG
66
n
67
ARG
66
A
ASP
67
n
68
ASP
67
A
SER
68
n
69
SER
68
A
GLU
69
n
70
GLU
69
A
GLY
70
n
71
GLY
70
A
GLU
71
n
72
GLU
71
A
ILE
72
n
73
ILE
72
A
VAL
73
n
74
VAL
73
A
GLY
74
n
75
GLY
74
A
VAL
75
n
76
VAL
75
A
ALA
76
n
77
ALA
76
A
LEU
77
n
78
LEU
77
A
TRP
78
n
79
TRP
78
A
ASP
79
n
80
ASP
79
A
ARG
80
n
81
ARG
80
A
PRO
81
n
82
PRO
81
A
ASP
82
n
83
ASP
82
A
n
84
83
A
n
85
84
A
n
86
85
A
n
87
86
A
n
88
87
A
n
89
88
A
n
90
89
A
n
91
90
A
n
92
91
A
n
93
92
A
n
94
93
A
n
95
94
A
PRO
95
n
96
PRO
95
A
ARG
96
n
97
ARG
96
A
LEU
97
n
98
LEU
97
A
VAL
98
n
99
VAL
98
A
SER
99
n
100
SER
99
A
ILE
100
n
101
ILE
100
A
PHE
101
n
102
PHE
101
A
GLY
102
n
103
GLY
102
A
n
104
103
A
LYS
104
n
105
LYS
104
A
ALA
105
n
106
ALA
105
A
ALA
106
n
107
ALA
106
A
n
108
107
A
n
109
108
A
n
110
109
A
n
111
110
A
n
112
111
A
n
113
112
A
n
114
113
A
n
115
114
A
n
116
115
A
ALA
116
n
117
ALA
116
A
ARG
117
n
118
ARG
117
A
PHE
118
n
119
PHE
118
A
HIS
119
n
120
HIS
119
A
PRO
120
n
121
PRO
120
A
LYS
121
n
122
LYS
121
A
PHE
122
n
123
PHE
122
A
PRO
123
n
124
PRO
123
A
HIS
124
n
125
HIS
124
A
TRP
125
n
126
TRP
125
A
TYR
126
n
127
TYR
126
A
LEU
127
n
128
LEU
127
A
TYR
128
n
129
TYR
128
A
THR
129
n
130
THR
129
A
VAL
130
n
131
VAL
130
A
ALA
131
n
132
ALA
131
A
THR
132
n
133
THR
132
A
SER
133
n
134
SER
133
A
SER
134
n
135
SER
134
A
SER
135
n
136
SER
135
A
ALA
136
n
137
ALA
136
A
ARG
137
n
138
ARG
137
A
GLY
138
n
139
GLY
138
A
THR
139
n
140
THR
139
A
GLY
140
n
141
GLY
140
A
VAL
141
n
142
VAL
141
A
GLY
142
n
143
GLY
142
A
SER
143
n
144
SER
143
A
ALA
144
n
145
ALA
144
A
LEU
145
n
146
LEU
145
A
LEU
146
n
147
LEU
146
A
ASN
147
n
148
ASN
147
A
HIS
148
n
149
HIS
148
A
GLY
149
n
150
GLY
149
A
ILE
150
n
151
ILE
150
A
ALA
151
n
152
ALA
151
A
ARG
152
n
153
ARG
152
A
ALA
153
n
154
ALA
153
A
GLY
154
n
155
GLY
154
A
ASP
155
n
156
ASP
155
A
GLU
156
n
157
GLU
156
A
ALA
157
n
158
ALA
157
A
ILE
158
n
159
ILE
158
A
TYR
159
n
160
TYR
159
A
LEU
160
n
161
LEU
160
A
GLU
161
n
162
GLU
161
A
ALA
162
n
163
ALA
162
A
THR
163
n
164
THR
163
A
SER
164
n
165
SER
164
A
THR
165
n
166
THR
165
A
ARG
166
n
167
ARG
166
A
ALA
167
n
168
ALA
167
A
ALA
168
n
169
ALA
168
A
GLN
169
n
170
GLN
169
A
LEU
170
n
171
LEU
170
A
TYR
171
n
172
TYR
171
A
ASN
172
n
173
ASN
172
A
ARG
173
n
174
ARG
173
A
LEU
174
n
175
LEU
174
A
GLY
175
n
176
GLY
175
A
PHE
176
n
177
PHE
176
A
VAL
177
n
178
VAL
177
A
PRO
178
n
179
PRO
178
A
LEU
179
n
180
LEU
179
A
GLY
180
n
181
GLY
180
A
TYR
181
n
182
TYR
181
A
ILE
182
n
183
ILE
182
A
PRO
183
n
184
PRO
183
A
SER
184
n
185
SER
184
A
ASP
185
n
186
ASP
185
A
ASP
186
n
187
ASP
186
A
ASP
187
n
188
ASP
187
A
GLY
188
n
189
GLY
188
A
THR
189
n
190
THR
189
A
PRO
190
n
191
PRO
190
A
GLU
191
n
192
GLU
191
A
LEU
192
n
193
LEU
192
A
ALA
193
n
194
ALA
193
A
MSE
194
n
195
MSE
194
A
TRP
195
n
196
TRP
195
A
LYS
196
n
197
LYS
196
A
PRO
197
n
198
PRO
197
A
PRO
198
n
199
PRO
198
A
ALA
199
n
200
ALA
199
A
MSE
200
n
201
MSE
200
A
PRO
201
n
202
PRO
201
A
THR
202
n
203
THR
202
A
VAL
203
n
204
VAL
203
A
1.5341
-0.1742
1.0368
0.5747
0.6867
3.9742
0.0749
-0.0492
0.0814
-0.2093
-0.2460
0.2036
-0.1457
-0.3169
0.1711
-0.0148
0.0085
-0.0784
-0.2175
-0.0622
-0.1478
refined
14.8510
26.0130
4.5030
X-RAY DIFFRACTION
0.6385
0.4625
-0.0444
4.1358
1.7665
1.7819
0.0320
0.1007
-0.0192
-0.3209
-0.0852
-0.0303
-0.2008
-0.1311
0.0532
0.0135
-0.0208
-0.0382
-0.2329
0.0157
-0.1767
refined
21.7540
11.2450
0.6380
X-RAY DIFFRACTION
20.1585
20.5462
7.4903
49.7283
24.3809
49.3682
-0.0307
-0.9469
-0.8857
2.8940
-0.8503
1.7972
1.8854
-2.7126
0.8810
0.6811
0.0576
-0.0052
0.8726
-0.0930
0.7619
refined
-1.6160
22.7640
2.0370
X-RAY DIFFRACTION
A
1
A
2
A
82
A
83
X-RAY DIFFRACTION
1
ALL
A
117
A
118
A
203
A
204
X-RAY DIFFRACTION
2
ALL
A
95
A
96
A
106
A
107
X-RAY DIFFRACTION
3
ALL
author_and_software_defined_assembly
PISA,PQS
2
dimeric
gel filtration
5330
27
18650
A
MSE
1
SELENOMETHIONINE
A
MSE
2
MET
A
MSE
194
SELENOMETHIONINE
A
MSE
195
MET
A
MSE
200
SELENOMETHIONINE
A
MSE
201
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_555
x-y,-y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
6
A
N
LEU
7
A
O
VAL
64
A
O
VAL
65
A
N
ALA
65
A
N
ALA
66
A
O
VAL
73
A
O
VAL
74
A
N
VAL
75
A
N
VAL
76
A
O
ALA
131
A
O
ALA
132
A
N
TRP
125
A
N
TRP
126
A
O
TYR
159
A
O
TYR
160
A
N
ALA
162
A
N
ALA
163
A
O
LEU
192
A
O
LEU
193
A
O
TRP
195
A
O
TRP
196
A
N
VAL
177
A
N
VAL
178
1
A
CG
ASP
82
A
CG
ASP
83
1
Y
1
A
OD1
ASP
82
A
OD1
ASP
83
1
Y
1
A
OD2
ASP
82
A
OD2
ASP
83
1
Y
1
A
CG1
VAL
98
A
CG1
VAL
99
1
Y
1
A
CG2
VAL
98
A
CG2
VAL
99
1
Y
1
A
CG
ARG
117
A
CG
ARG
118
1
Y
1
A
CD
ARG
117
A
CD
ARG
118
1
Y
1
A
NE
ARG
117
A
NE
ARG
118
1
Y
1
A
CZ
ARG
117
A
CZ
ARG
118
1
Y
1
A
NH1
ARG
117
A
NH1
ARG
118
1
Y
1
A
NH2
ARG
117
A
NH2
ARG
118
1
Y
1
A
CG
ASP
186
A
CG
ASP
187
1
Y
1
A
OD1
ASP
186
A
OD1
ASP
187
1
Y
1
A
OD2
ASP
186
A
OD2
ASP
187
1
Y
1
A
CG
ASP
187
A
CG
ASP
188
1
Y
1
A
OD1
ASP
187
A
OD1
ASP
188
1
Y
1
A
OD2
ASP
187
A
OD2
ASP
188
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
A
GLY
83
A
GLY
84
1
Y
1
A
ASN
84
A
ASN
85
1
Y
1
A
HIS
85
A
HIS
86
1
Y
1
A
SER
86
A
SER
87
1
Y
1
A
ALA
87
A
ALA
88
1
Y
1
A
LYS
88
A
LYS
89
1
Y
1
A
ASP
89
A
ASP
90
1
Y
1
A
GLN
90
A
GLN
91
1
Y
1
A
ALA
91
A
ALA
92
1
Y
1
A
ALA
92
A
ALA
93
1
Y
1
A
MSE
93
A
MSE
94
1
Y
1
A
LEU
94
A
LEU
95
1
Y
1
A
ILE
103
A
ILE
104
1
Y
1
A
GLN
107
A
GLN
108
1
Y
1
A
VAL
108
A
VAL
109
1
Y
1
A
ALA
109
A
ALA
110
1
Y
1
A
TRP
110
A
TRP
111
1
Y
1
A
THR
111
A
THR
112
1
Y
1
A
ASP
112
A
ASP
113
1
Y
1
A
LEU
113
A
LEU
114
1
Y
1
A
SER
114
A
SER
115
1
Y
1
A
SER
115
A
SER
116
1
Y
1
A
CA
ALA
105
PLANAR
1
A
GLN
55
-125.07
-57.97
1
A
ALA
105
-131.83
-109.01
1
A
ASP
186
50.67
-28.61
41.353
1.770
0.890
0.000
1.770
0.000
-2.660
0.960
0.940
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE
INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY
OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75
FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION.
3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY.
4. ETHYLENE GLYCOL WAS MODELED BASED ON CRYO CONDITIONS.
5. RESIDUES 83-94, 103, 107-115 ARE DISORDERED AND WERE NOT
MODELED.
6. ASP 186 IS A RAMACHANDRAN OUTLIER AND IS LOCATED IN POOR DENSITY.
0.242
0.193
0.195
0.195
1.900
27.640
1363
27120
5.000
99.480
6.388
0.096
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
MAD, MOLECULAR REPLACEMENT
0.106
0.116
0.800
0.800
1.200
MAXIMUM LIKELIHOOD
MASK
1.900
27.640
151
1562
36
0
1375
0.016
0.022
1457
0.001
0.020
1357
1.609
1.975
1977
1.095
3.000
3139
6.529
5.000
183
37.366
23.158
57
12.391
15.000
206
15.970
15.000
9
0.149
0.200
220
0.006
0.020
1595
0.001
0.020
290
0.225
0.200
286
0.187
0.200
1311
0.181
0.200
691
0.086
0.200
834
0.205
0.200
105
0.037
0.200
6
0.195
0.200
73
0.200
0.200
13
2.370
3.000
942
0.603
3.000
363
3.613
5.000
1471
5.400
8.000
601
7.142
11.000
503
0.377
0.285
1.949
87
1843
1930
20
99.130
32.59
1.900
27.640
2QEC
27197
0.071
1,2
17.36
17.62
99.5
0.905
1.90
1.97
2.0
29060
1,2
99.3
0.624
1.97
2.05
2.8
29134
1,2
99.0
0.422
2.05
2.14
4.0
27573
1,2
99.3
0.411
2.14
2.25
5.9
47227
1,2
99.5
0.333
2.25
2.39
8.3
57039
1,2
99.4
0.226
2.39
2.58
11.7
59495
1,2
99.6
0.144
2.58
2.84
17.3
57836
1,2
99.8
0.086
2.84
3.25
27.1
57913
1,2
99.8
0.051
3.25
4.08
42.0
56376
1,2
99.9
0.036
4.08
27.64
51.7
57459
1,2
99.5
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
5.2.0005
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html
XSCALE
package
data extraction
PDB
sw-help@rcsb.rutgers.edu
April. 3, 2006
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
2.000
data collection
Blu-Ice
v 5.0
data reduction
XDS
data reduction
MOSFLM
data scaling
SCALA
phasing
SHELXD
phasing
autoSHARP
phasing
PHASER
Crystal structure of histone acetyltransferase HPA2 and related acetyltransferase (NP_600742.1) from Corynebacterium glutamicum ATCC 13032 at 1.90 A resolution
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF
A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION
A
THR
9
A
THR
10
HELX_P
A
ALA
11
A
ALA
12
5
1
3
A
ASP
12
A
ASP
13
HELX_P
A
ALA
25
A
ALA
26
1
2
14
A
ASP
27
A
ASP
28
HELX_P
A
ARG
32
A
ARG
33
1
3
6
A
ASP
38
A
ASP
39
HELX_P
A
GLY
40
A
GLY
41
5
4
3
A
SER
41
A
SER
42
HELX_P
A
GLN
55
A
GLN
56
1
5
15
A
GLN
55
A
GLN
56
HELX_P
A
ALA
59
A
ALA
60
1
6
5
A
ARG
96
A
ARG
97
HELX_P
A
GLY
102
A
GLY
103
1
7
7
A
SER
134
A
SER
135
HELX_P
A
ARG
137
A
ARG
138
5
8
4
A
GLY
140
A
GLY
141
HELX_P
A
GLY
154
A
GLY
155
1
9
15
A
SER
164
A
SER
165
HELX_P
A
LEU
174
A
LEU
175
1
10
11
covale
1.323
both
A
MSE
1
A
C
MSE
2
1_555
A
SER
2
A
N
SER
3
1_555
covale
1.331
both
A
ALA
193
A
C
ALA
194
1_555
A
MSE
194
A
N
MSE
195
1_555
covale
1.338
both
A
MSE
194
A
C
MSE
195
1_555
A
TRP
195
A
N
TRP
196
1_555
covale
1.329
both
A
ALA
199
A
C
ALA
200
1_555
A
MSE
200
A
N
MSE
201
1_555
covale
1.351
both
A
MSE
200
A
C
MSE
201
1_555
A
PRO
201
A
N
PRO
202
1_555
TRANSFERASE
NP_600742.1, histone acetyltransferase HPA2 and related acetyltransferase, Acetyltransferase (GNAT) family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, TRANSFERASE
A
GLN
36
A
GLN
37
1
A
PRO
37
A
PRO
38
-7.52
Q8NQB1_CORGL
UNP
1
1
Q8NQB1
MSPTVLPATQADFPKIVDVLVEAFANDPAFLRWIPQPDPGSAKLRALFELQIEKQYAVAGNIDVARDSEGEIVGVALWDR
PDGNHSAKDQAAMLPRLVSIFGIKAAQVAWTDLSSARFHPKFPHWYLYTVATSSSARGTGVGSALLNHGIARAGDEAIYL
EATSTRAAQLYNRLGFVPLGYIPSDDDGTPELAMWKPPAMPTV
1
203
2QEC
1
203
Q8NQB1
A
1
2
204
1
expression tag
GLY
0
2QEC
A
Q8NQB1
UNP
1
1
MET
modified residue
MSE
1
2QEC
A
Q8NQB1
UNP
1
2
1
ALA
engineered mutation
THR
29
2QEC
A
Q8NQB1
UNP
29
30
1
MET
modified residue
MSE
93
2QEC
A
Q8NQB1
UNP
93
94
1
MET
modified residue
MSE
194
2QEC
A
Q8NQB1
UNP
194
195
1
MET
modified residue
MSE
200
2QEC
A
Q8NQB1
UNP
200
201
7
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
THR
4
A
THR
5
A
PRO
7
A
PRO
8
A
GLY
60
A
GLY
61
A
ARG
66
A
ARG
67
A
ILE
72
A
ILE
73
A
ASP
79
A
ASP
80
A
TRP
125
A
TRP
126
A
THR
132
A
THR
133
A
ILE
158
A
ILE
159
A
ALA
162
A
ALA
163
A
GLU
191
A
GLU
192
A
LYS
196
A
LYS
197
A
VAL
177
A
VAL
178
A
ILE
182
A
ILE
183
BINDING SITE FOR RESIDUE EDO A 204
A
EDO
204
Software
7
BINDING SITE FOR RESIDUE EDO A 205
A
EDO
205
Software
3
BINDING SITE FOR RESIDUE EDO A 206
A
EDO
206
Software
6
BINDING SITE FOR RESIDUE EDO A 207
A
EDO
207
Software
7
BINDING SITE FOR RESIDUE EDO A 208
A
EDO
208
Software
8
BINDING SITE FOR RESIDUE EDO A 209
A
EDO
209
Software
4
BINDING SITE FOR RESIDUE EDO A 210
A
EDO
210
Software
8
BINDING SITE FOR RESIDUE EDO A 211
A
EDO
211
Software
6
BINDING SITE FOR RESIDUE EDO A 212
A
EDO
212
Software
8
A
ASP
155
A
ASP
156
7
1_555
A
GLU
156
A
GLU
157
7
1_555
A
ASP
186
A
ASP
187
7
5_555
A
ASP
187
A
ASP
188
7
5_555
A
GLY
188
A
GLY
189
7
5_555
A
ALA
199
A
ALA
200
7
1_555
A
HOH
344
K
HOH
7
1_555
A
ALA
8
A
ALA
9
3
1_555
A
ALA
57
A
ALA
58
3
1_555
A
EDO
210
H
EDO
3
1_555
A
TYR
128
A
TYR
129
6
1_555
A
THR
129
A
THR
130
6
1_555
A
VAL
130
A
VAL
131
6
1_555
A
GLU
161
A
GLU
162
6
1_555
A
TYR
171
A
TYR
172
6
1_555
A
HOH
227
K
HOH
6
1_555
A
PRO
178
A
PRO
179
7
8_555
A
ASP
187
A
ASP
188
7
5_555
A
GLY
188
A
GLY
189
7
5_555
A
LEU
192
A
LEU
193
7
8_555
A
ALA
199
A
ALA
200
7
1_555
A
MSE
200
A
MSE
201
7
1_555
A
PRO
201
A
PRO
202
7
1_555
A
ILE
150
A
ILE
151
8
1_555
A
ALA
153
A
ALA
154
8
1_555
A
GLY
154
A
GLY
155
8
1_555
A
GLU
156
A
GLU
157
8
1_555
A
ILE
158
A
ILE
159
8
1_555
A
LYS
196
A
LYS
197
8
1_555
A
HOH
248
K
HOH
8
1_555
A
HOH
271
K
HOH
8
1_555
A
VAL
130
A
VAL
131
4
1_555
A
THR
132
A
THR
133
4
1_555
A
GLY
142
A
GLY
143
4
1_555
A
EDO
211
I
EDO
4
1_555
A
PRO
7
A
PRO
8
8
1_555
A
ASN
61
A
ASN
62
8
1_555
A
ILE
62
A
ILE
63
8
1_555
A
ASP
63
A
ASP
64
8
1_555
A
ARG
152
A
ARG
153
8
1_555
A
EDO
205
C
EDO
8
1_555
A
HOH
316
K
HOH
8
1_555
A
HOH
322
K
HOH
8
1_555
A
THR
132
A
THR
133
6
1_555
A
ARG
137
A
ARG
138
6
1_555
A
GLY
138
A
GLY
139
6
1_555
A
EDO
209
G
EDO
6
1_555
A
HOH
240
K
HOH
6
1_555
A
HOH
329
K
HOH
6
1_555
A
LEU
31
A
LEU
32
8
5_555
A
GLN
36
A
GLN
37
8
5_555
A
ARG
152
A
ARG
153
8
1_555
A
ALA
153
A
ALA
154
8
1_555
A
GLY
154
A
GLY
155
8
1_555
A
ASP
155
A
ASP
156
8
1_555
A
GLU
156
A
GLU
157
8
1_555
A
HOH
334
K
HOH
8
5_555
179
P 65 2 2