0.019848 0.000000 0.000000 0.000000 0.015871 0.000000 0.000000 0.000000 0.034610 0.00000 0.00000 0.00000 Yu, J. Zhou, C.Z. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 50.384 63.009 28.893 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N O N 76 N C N 77 N O N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N N N 85 S C N 86 N C N 87 N O N 88 N C N 89 N C N 90 N C N 91 N O N 92 N N N 93 N O N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N N N 105 S C N 106 N C N 107 N O N 108 N C N 109 N C N 110 N C N 111 N O N 112 N O N 113 N O N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 N C N 125 N C N 126 N O N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N N N 134 S C N 135 N C N 136 N O N 137 N C Y 138 N C Y 139 N N Y 140 N C Y 141 N C Y 142 N N N 143 N O N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N O N 155 N H N 156 N H N 157 N N N 158 S C N 159 N C N 160 N O N 161 S C N 162 N C N 163 N C N 164 N C N 165 N O N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N N N 180 S C N 181 N C N 182 N O N 183 N C N 184 N C N 185 N C N 186 N C N 187 N O N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N N N 202 S C N 203 N C N 204 N O N 205 N C N 206 N C N 207 N C N 208 N C N 209 N N N 210 N O N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C N 231 N C N 232 N S N 233 N C N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N MG N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 R C N 306 N O N 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N N Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C N 356 N O N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C N 374 N C N 375 N C N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N doub N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing Y 136 N sing Y 137 N doub Y 138 N doub N 139 N sing Y 140 N sing N 141 N sing Y 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing Y 244 N doub Y 245 N sing Y 246 N sing N 247 N sing Y 248 N doub N 249 N sing Y 250 N doub N 251 N sing Y 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing Y 313 N doub Y 314 N sing Y 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N sing Y 322 N doub N 323 N sing Y 324 N doub N 325 N sing Y 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing Y 341 N doub Y 342 N sing Y 343 N sing N 344 N sing Y 345 N doub N 346 N sing Y 347 N doub N 348 N sing Y 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing US Proteins PSFGEY 0867 0887-3585 71 1050 1055 10.1002/prot.21975 18260097 Crystal structure of the dimeric Urm1 from the yeast Saccharomyces cerevisiae. 2008 10.2210/pdb2qjl/pdb pdb_00002qjl 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrors IMAGE PLATE MAR scanner 345 mm plate YALE MIRRORS SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 11039.428 Ubiquitin-related modifier 1 1 man polymer 24.305 MAGNESIUM ION 2 syn non-polymer 62.068 1,2-ETHANEDIOL 1 syn non-polymer 18.015 water 248 nat water Urm1 no no MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEK DYILEDGDIISFTSTLHGG MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEK DYILEDGDIISFTSTLHGG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces S288c Escherichia sample Urm1 4932 Saccharomyces cerevisiae 562 Escherichia coli Rosetta(DE3) plasmid pET29a-derived 1 2.08 40.77 VAPOR DIFFUSION, HANGING DROP 8.5 0.2M MgCl2, 0.1M Tris, 30% PEG4000, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K 289 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2007-07-17 1 1 2008-05-01 1 2 2011-07-13 1 3 2023-10-25 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id solution structure RCSB Y PDBJ 2007-07-07 REL REL MG MAGNESIUM ION EDO 1,2-ETHANEDIOL HOH water 2AX5 PDB ENTRY 2AX5 PDB experimental model MG 1 2 MG MG 1001 A MG 2 2 MG MG 1002 A EDO 1 3 EDO EDO 2001 A HOH 1 4 HOH HOH 2002 A HOH 2 4 HOH HOH 2003 A HOH 3 4 HOH HOH 2004 A HOH 4 4 HOH HOH 2005 A HOH 5 4 HOH HOH 2006 A HOH 6 4 HOH HOH 2007 A HOH 7 4 HOH HOH 2008 A HOH 8 4 HOH HOH 2009 A HOH 9 4 HOH HOH 2010 A HOH 10 4 HOH HOH 2011 A HOH 11 4 HOH HOH 2012 A HOH 12 4 HOH HOH 2013 A HOH 13 4 HOH HOH 2014 A HOH 14 4 HOH HOH 2015 A HOH 15 4 HOH HOH 2016 A HOH 16 4 HOH HOH 2017 A HOH 17 4 HOH HOH 2018 A HOH 18 4 HOH HOH 2019 A HOH 19 4 HOH HOH 2020 A HOH 20 4 HOH HOH 2021 A HOH 21 4 HOH HOH 2022 A HOH 22 4 HOH HOH 2023 A HOH 23 4 HOH HOH 2024 A HOH 24 4 HOH HOH 2025 A HOH 25 4 HOH HOH 2026 A HOH 26 4 HOH HOH 2027 A HOH 27 4 HOH HOH 2028 A HOH 28 4 HOH HOH 2029 A HOH 29 4 HOH HOH 2030 A HOH 30 4 HOH HOH 2031 A HOH 31 4 HOH HOH 2032 A HOH 32 4 HOH HOH 2033 A HOH 33 4 HOH HOH 2034 A HOH 34 4 HOH HOH 2035 A HOH 35 4 HOH HOH 2036 A HOH 36 4 HOH HOH 2037 A HOH 37 4 HOH HOH 2038 A HOH 38 4 HOH HOH 2039 A HOH 39 4 HOH HOH 2040 A HOH 40 4 HOH HOH 2041 A HOH 41 4 HOH HOH 2042 A HOH 42 4 HOH HOH 2043 A HOH 43 4 HOH HOH 2044 A HOH 44 4 HOH HOH 2045 A HOH 45 4 HOH HOH 2046 A HOH 46 4 HOH HOH 2047 A HOH 47 4 HOH HOH 2048 A HOH 48 4 HOH HOH 2049 A HOH 49 4 HOH HOH 2050 A HOH 50 4 HOH HOH 2051 A HOH 51 4 HOH HOH 2052 A HOH 52 4 HOH HOH 2053 A HOH 53 4 HOH HOH 2054 A HOH 54 4 HOH HOH 2055 A HOH 55 4 HOH HOH 2056 A HOH 56 4 HOH HOH 2057 A HOH 57 4 HOH HOH 2058 A HOH 58 4 HOH HOH 2059 A HOH 59 4 HOH HOH 2060 A HOH 60 4 HOH HOH 2061 A HOH 61 4 HOH HOH 2062 A HOH 62 4 HOH HOH 2063 A HOH 63 4 HOH HOH 2064 A HOH 64 4 HOH HOH 2065 A HOH 65 4 HOH HOH 2066 A HOH 66 4 HOH HOH 2067 A HOH 67 4 HOH HOH 2068 A HOH 68 4 HOH HOH 2069 A HOH 69 4 HOH HOH 2070 A HOH 70 4 HOH HOH 2071 A HOH 71 4 HOH HOH 2072 A HOH 72 4 HOH HOH 2073 A HOH 73 4 HOH HOH 2074 A HOH 74 4 HOH HOH 2075 A HOH 75 4 HOH HOH 2076 A HOH 76 4 HOH HOH 2077 A HOH 77 4 HOH HOH 2078 A HOH 78 4 HOH HOH 2079 A HOH 79 4 HOH HOH 2080 A HOH 80 4 HOH HOH 2081 A HOH 81 4 HOH HOH 2082 A HOH 82 4 HOH HOH 2083 A HOH 83 4 HOH HOH 2084 A HOH 84 4 HOH HOH 2085 A HOH 85 4 HOH HOH 2086 A HOH 86 4 HOH HOH 2087 A HOH 87 4 HOH HOH 2088 A HOH 88 4 HOH HOH 2089 A HOH 89 4 HOH HOH 2090 A HOH 90 4 HOH HOH 2091 A HOH 91 4 HOH HOH 2092 A HOH 92 4 HOH HOH 2093 A HOH 93 4 HOH HOH 2094 A HOH 94 4 HOH HOH 2095 A HOH 95 4 HOH HOH 2096 A HOH 96 4 HOH HOH 2097 A HOH 97 4 HOH HOH 2098 A HOH 98 4 HOH HOH 2099 A HOH 99 4 HOH HOH 2100 A HOH 100 4 HOH HOH 2101 A HOH 101 4 HOH HOH 2102 A HOH 102 4 HOH HOH 2103 A HOH 103 4 HOH HOH 2104 A HOH 104 4 HOH HOH 2105 A HOH 105 4 HOH HOH 2106 A HOH 106 4 HOH HOH 2107 A HOH 107 4 HOH HOH 2108 A HOH 108 4 HOH HOH 2109 A HOH 109 4 HOH HOH 2110 A HOH 110 4 HOH HOH 2111 A HOH 111 4 HOH HOH 2112 A HOH 112 4 HOH HOH 2113 A HOH 113 4 HOH HOH 2114 A HOH 114 4 HOH HOH 2115 A HOH 115 4 HOH HOH 2116 A HOH 116 4 HOH HOH 2117 A HOH 117 4 HOH HOH 2118 A HOH 118 4 HOH HOH 2119 A HOH 119 4 HOH HOH 2120 A HOH 120 4 HOH HOH 2121 A HOH 121 4 HOH HOH 2122 A HOH 122 4 HOH HOH 2123 A HOH 123 4 HOH HOH 2124 A HOH 124 4 HOH HOH 2125 A HOH 125 4 HOH HOH 2126 A HOH 126 4 HOH HOH 2127 A HOH 127 4 HOH HOH 2128 A HOH 128 4 HOH HOH 2129 A HOH 129 4 HOH HOH 2130 A HOH 130 4 HOH HOH 2131 A HOH 131 4 HOH HOH 2132 A HOH 132 4 HOH HOH 2133 A HOH 133 4 HOH HOH 2134 A HOH 134 4 HOH HOH 2135 A HOH 135 4 HOH HOH 2136 A HOH 136 4 HOH HOH 2137 A HOH 137 4 HOH HOH 2138 A HOH 138 4 HOH HOH 2139 A HOH 139 4 HOH HOH 2140 A HOH 140 4 HOH HOH 2141 A HOH 141 4 HOH HOH 2142 A HOH 142 4 HOH HOH 2143 A HOH 143 4 HOH HOH 2144 A HOH 144 4 HOH HOH 2145 A HOH 145 4 HOH HOH 2146 A HOH 146 4 HOH HOH 2147 A HOH 147 4 HOH HOH 2148 A HOH 148 4 HOH HOH 2149 A HOH 149 4 HOH HOH 2150 A HOH 150 4 HOH HOH 2151 A HOH 151 4 HOH HOH 2152 A HOH 152 4 HOH HOH 2153 A HOH 153 4 HOH HOH 2154 A HOH 154 4 HOH HOH 2155 A HOH 155 4 HOH HOH 2156 A HOH 156 4 HOH HOH 2157 A HOH 157 4 HOH HOH 2158 A HOH 158 4 HOH HOH 2159 A HOH 159 4 HOH HOH 2160 A HOH 160 4 HOH HOH 2161 A HOH 161 4 HOH HOH 2162 A HOH 162 4 HOH HOH 2163 A HOH 163 4 HOH HOH 2164 A HOH 164 4 HOH HOH 2165 A HOH 165 4 HOH HOH 2166 A HOH 166 4 HOH HOH 2167 A HOH 167 4 HOH HOH 2168 A HOH 168 4 HOH HOH 2169 A HOH 169 4 HOH HOH 2170 A HOH 170 4 HOH HOH 2171 A HOH 171 4 HOH HOH 2172 A HOH 172 4 HOH HOH 2173 A HOH 173 4 HOH HOH 2174 A HOH 174 4 HOH HOH 2175 A HOH 175 4 HOH HOH 2176 A HOH 176 4 HOH HOH 2177 A HOH 177 4 HOH HOH 2178 A HOH 178 4 HOH HOH 2179 A HOH 179 4 HOH HOH 2180 A HOH 180 4 HOH HOH 2181 A HOH 181 4 HOH HOH 2182 A HOH 182 4 HOH HOH 2183 A HOH 183 4 HOH HOH 2184 A HOH 184 4 HOH HOH 2185 A HOH 185 4 HOH HOH 2186 A HOH 186 4 HOH HOH 2187 A HOH 187 4 HOH HOH 2188 A HOH 188 4 HOH HOH 2189 A HOH 189 4 HOH HOH 2190 A HOH 190 4 HOH HOH 2191 A HOH 191 4 HOH HOH 2192 A HOH 192 4 HOH HOH 2193 A HOH 193 4 HOH HOH 2194 A HOH 194 4 HOH HOH 2195 A HOH 195 4 HOH HOH 2196 A HOH 196 4 HOH HOH 2197 A HOH 197 4 HOH HOH 2198 A HOH 198 4 HOH HOH 2199 A HOH 199 4 HOH HOH 2200 A HOH 200 4 HOH HOH 2201 A HOH 201 4 HOH HOH 2202 A HOH 202 4 HOH HOH 2203 A HOH 203 4 HOH HOH 2204 A HOH 204 4 HOH HOH 2205 A HOH 205 4 HOH HOH 2206 A HOH 206 4 HOH HOH 2207 A HOH 207 4 HOH HOH 2208 A HOH 208 4 HOH HOH 2209 A HOH 209 4 HOH HOH 2210 A HOH 210 4 HOH HOH 2211 A HOH 211 4 HOH HOH 2212 A HOH 212 4 HOH HOH 2213 A HOH 213 4 HOH HOH 2214 A HOH 214 4 HOH HOH 2215 A HOH 215 4 HOH HOH 2216 A HOH 216 4 HOH HOH 2217 A HOH 217 4 HOH HOH 2218 A HOH 218 4 HOH HOH 2219 A HOH 219 4 HOH HOH 2220 A HOH 220 4 HOH HOH 2221 A HOH 221 4 HOH HOH 2222 A HOH 222 4 HOH HOH 2223 A HOH 223 4 HOH HOH 2224 A HOH 224 4 HOH HOH 2225 A HOH 225 4 HOH HOH 2226 A HOH 226 4 HOH HOH 2227 A HOH 227 4 HOH HOH 2228 A HOH 228 4 HOH HOH 2229 A HOH 229 4 HOH HOH 2230 A HOH 230 4 HOH HOH 2231 A HOH 231 4 HOH HOH 2232 A HOH 232 4 HOH HOH 2233 A HOH 233 4 HOH HOH 2234 A HOH 234 4 HOH HOH 2235 A HOH 235 4 HOH HOH 2236 A HOH 236 4 HOH HOH 2237 A HOH 237 4 HOH HOH 2238 A HOH 238 4 HOH HOH 2239 A HOH 239 4 HOH HOH 2240 A HOH 240 4 HOH HOH 2241 A HOH 241 4 HOH HOH 2242 A HOH 242 4 HOH HOH 2243 A HOH 243 4 HOH HOH 2244 A HOH 244 4 HOH HOH 2245 A HOH 245 4 HOH HOH 2246 A HOH 246 4 HOH HOH 2247 A HOH 247 4 HOH HOH 2248 A HOH 248 4 HOH HOH 2249 A MET 1 n 1 MET 1 A VAL 2 n 2 VAL 2 A ASN 3 n 3 ASN 3 A VAL 4 n 4 VAL 4 A LYS 5 n 5 LYS 5 A VAL 6 n 6 VAL 6 A GLU 7 n 7 GLU 7 A PHE 8 n 8 PHE 8 A LEU 9 n 9 LEU 9 A GLY 10 n 10 GLY 10 A GLY 11 n 11 GLY 11 A LEU 12 n 12 LEU 12 A ASP 13 n 13 ASP 13 A ALA 14 n 14 ALA 14 A ILE 15 n 15 ILE 15 A PHE 16 n 16 PHE 16 A GLY 17 n 17 GLY 17 A LYS 18 n 18 LYS 18 A GLN 19 n 19 GLN 19 A ARG 20 n 20 ARG 20 A VAL 21 n 21 VAL 21 A HIS 22 n 22 HIS 22 A LYS 23 n 23 LYS 23 A ILE 24 n 24 ILE 24 A LYS 25 n 25 LYS 25 A MET 26 n 26 MET 26 A ASP 27 n 27 ASP 27 A LYS 28 n 28 LYS 28 A GLU 29 n 29 GLU 29 A ASP 30 n 30 ASP 30 A PRO 31 n 31 PRO 31 A VAL 32 n 32 VAL 32 A THR 33 n 33 THR 33 A VAL 34 n 34 VAL 34 A GLY 35 n 35 GLY 35 A ASP 36 n 36 ASP 36 A LEU 37 n 37 LEU 37 A ILE 38 n 38 ILE 38 A ASP 39 n 39 ASP 39 A HIS 40 n 40 HIS 40 A ILE 41 n 41 ILE 41 A VAL 42 n 42 VAL 42 A SER 43 n 43 SER 43 A THR 44 n 44 THR 44 A MET 45 n 45 MET 45 A ILE 46 n 46 ILE 46 A ASN 47 n 47 ASN 47 A ASN 48 n 48 ASN 48 A PRO 49 n 49 PRO 49 A ASN 50 n 50 ASN 50 A ASP 51 n 51 ASP 51 A VAL 52 n 52 VAL 52 A SER 53 n 53 SER 53 A ILE 54 n 54 ILE 54 A PHE 55 n 55 PHE 55 A ILE 56 n 56 ILE 56 A GLU 57 n 57 GLU 57 A ASP 58 n 58 ASP 58 A ASP 59 n 59 ASP 59 A SER 60 n 60 SER 60 A ILE 61 n 61 ILE 61 A ARG 62 n 62 ARG 62 A PRO 63 n 63 PRO 63 A GLY 64 n 64 GLY 64 A ILE 65 n 65 ILE 65 A ILE 66 n 66 ILE 66 A THR 67 n 67 THR 67 A LEU 68 n 68 LEU 68 A ILE 69 n 69 ILE 69 A ASN 70 n 70 ASN 70 A ASP 71 n 71 ASP 71 A THR 72 n 72 THR 72 A ASP 73 n 73 ASP 73 A TRP 74 n 74 TRP 74 A GLU 75 n 75 GLU 75 A LEU 76 n 76 LEU 76 A GLU 77 n 77 GLU 77 A GLY 78 n 78 GLY 78 A GLU 79 n 79 GLU 79 A LYS 80 n 80 LYS 80 A ASP 81 n 81 ASP 81 A TYR 82 n 82 TYR 82 A ILE 83 n 83 ILE 83 A LEU 84 n 84 LEU 84 A GLU 85 n 85 GLU 85 A ASP 86 n 86 ASP 86 A GLY 87 n 87 GLY 87 A ASP 88 n 88 ASP 88 A ILE 89 n 89 ILE 89 A ILE 90 n 90 ILE 90 A SER 91 n 91 SER 91 A PHE 92 n 92 PHE 92 A THR 93 n 93 THR 93 A SER 94 n 94 SER 94 A THR 95 n 95 THR 95 A LEU 96 n 96 LEU 96 A HIS 97 n 97 HIS 97 A GLY 98 n 98 GLY 98 A GLY 99 n 99 GLY 99 A author_defined_assembly 1 monomeric A HOH 2058 E O HOH 1_555 A MG 1001 B MG MG 1_555 A HOH 2079 E O HOH 1_555 93.3 A HOH 2058 E O HOH 1_555 A MG 1001 B MG MG 1_555 A HOH 2085 E O HOH 1_555 94.7 A HOH 2079 E O HOH 1_555 A MG 1001 B MG MG 1_555 A HOH 2085 E O HOH 1_555 170.9 A HOH 2058 E O HOH 1_555 A MG 1001 B MG MG 1_555 A HOH 2102 E O HOH 1_555 87.4 A HOH 2079 E O HOH 1_555 A MG 1001 B MG MG 1_555 A HOH 2102 E O HOH 1_555 87.4 A HOH 2085 E O HOH 1_555 A MG 1001 B MG MG 1_555 A HOH 2102 E O HOH 1_555 88.5 A HOH 2058 E O HOH 1_555 A MG 1001 B MG MG 1_555 A HOH 2114 E O HOH 1_555 178.8 A HOH 2079 E O HOH 1_555 A MG 1001 B MG MG 1_555 A HOH 2114 E O HOH 1_555 85.9 A HOH 2085 E O HOH 1_555 A MG 1001 B MG MG 1_555 A HOH 2114 E O HOH 1_555 86.2 A HOH 2102 E O HOH 1_555 A MG 1001 B MG MG 1_555 A HOH 2114 E O HOH 1_555 93.4 A HOH 2058 E O HOH 1_555 A MG 1001 B MG MG 1_555 A HOH 2158 E O HOH 1_555 88.1 A HOH 2079 E O HOH 1_555 A MG 1001 B MG MG 1_555 A HOH 2158 E O HOH 1_555 89.6 A HOH 2085 E O HOH 1_555 A MG 1001 B MG MG 1_555 A HOH 2158 E O HOH 1_555 95.2 A HOH 2102 E O HOH 1_555 A MG 1001 B MG MG 1_555 A HOH 2158 E O HOH 1_555 174.4 A HOH 2114 E O HOH 1_555 A MG 1001 B MG MG 1_555 A HOH 2158 E O HOH 1_555 91.0 A HOH 2109 E O HOH 1_555 A MG 1002 C MG MG 1_555 A HOH 2154 E O HOH 1_555 171.1 A HOH 2109 E O HOH 1_555 A MG 1002 C MG MG 1_555 A HOH 2162 E O HOH 1_555 87.8 A HOH 2154 E O HOH 1_555 A MG 1002 C MG MG 1_555 A HOH 2162 E O HOH 1_555 88.0 A HOH 2109 E O HOH 1_555 A MG 1002 C MG MG 1_555 A HOH 2165 E O HOH 1_555 88.4 A HOH 2154 E O HOH 1_555 A MG 1002 C MG MG 1_555 A HOH 2165 E O HOH 1_555 99.1 A HOH 2162 E O HOH 1_555 A MG 1002 C MG MG 1_555 A HOH 2165 E O HOH 1_555 85.7 A HOH 2109 E O HOH 1_555 A MG 1002 C MG MG 1_555 A HOH 2170 E O HOH 1_555 93.1 A HOH 2154 E O HOH 1_555 A MG 1002 C MG MG 1_555 A HOH 2170 E O HOH 1_555 91.0 A HOH 2162 E O HOH 1_555 A MG 1002 C MG MG 1_555 A HOH 2170 E O HOH 1_555 179.1 A HOH 2165 E O HOH 1_555 A MG 1002 C MG MG 1_555 A HOH 2170 E O HOH 1_555 94.6 A HOH 2109 E O HOH 1_555 A MG 1002 C MG MG 1_555 A HOH 2221 E O HOH 1_555 80.0 A HOH 2154 E O HOH 1_555 A MG 1002 C MG MG 1_555 A HOH 2221 E O HOH 1_555 92.0 A HOH 2162 E O HOH 1_555 A MG 1002 C MG MG 1_555 A HOH 2221 E O HOH 1_555 89.2 A HOH 2165 E O HOH 1_555 A MG 1002 C MG MG 1_555 A HOH 2221 E O HOH 1_555 167.6 A HOH 2170 E O HOH 1_555 A MG 1002 C MG MG 1_555 A HOH 2221 E O HOH 1_555 90.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O MET 26 A O MET 26 A N VAL 2 A N VAL 2 A N LEU 9 A N LEU 9 A O PHE 92 A O PHE 92 A O THR 93 A O THR 93 A N ILE 66 A N ILE 66 A N ILE 69 A N ILE 69 A O THR 72 A O THR 72 A N GLU 57 A N GLU 57 A O SER 60 A O SER 60 1 A HOH 2112 E HOH 1 A HOH 2118 E HOH 1 A HOH 2197 E HOH 1 A HOH 2239 E HOH 1 A HOH 2240 E HOH 1 A GLU 79 52.09 -124.48 12.866 -0.15 0.00 0.00 -0.30 0.00 0.45 0.963 0.957 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.19752 0.16614 0.16771 1.44 30.00 859 15800 5.2 96.21 2.352 0.043 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.102 0.076 0.80 0.80 1.40 PDB ENTRY 2AX5 MAXIMUM LIKELIHOOD MASK 1.44 30.00 248 1070 6 0 816 0.008 0.022 839 1.200 1.972 1147 5.236 5.000 114 39.512 26.250 40 12.252 15.000 158 17.238 15.000 3 0.079 0.200 136 0.004 0.020 631 0.220 0.200 443 0.307 0.200 587 0.127 0.200 209 0.182 0.200 38 0.121 0.200 60 0.961 1.500 532 1.261 2.000 851 1.754 3.000 333 2.545 4.500 288 1.174 3.000 855 2.851 3.000 250 1.695 3.000 812 0.346 0.276 1.477 50 1094 20 91.89 18.0 1.44 30 2QJL 16525 15800 0.0283 1 13.3 8.51 96.3 0.1536 1.44 1.47 4.2 7.08 91.4 refinement REFMAC 5.2.0019 data collection MAR345dtb data reduction AUTOMAR phasing PHASES Crystal structure of Urm1 1 N N 2 N N 2 N N 3 N N 4 N N The biological assembly is a monomer. A GLY 11 A GLY 11 HELX_P A PHE 16 A PHE 16 5 1 6 A THR 33 A THR 33 HELX_P A MET 45 A MET 45 1 2 13 A ASN 48 A ASN 48 HELX_P A ASN 50 A ASN 50 5 3 3 A ASP 51 A ASP 51 HELX_P A PHE 55 A PHE 55 1 4 5 A GLU 75 A GLU 75 HELX_P A TYR 82 A TYR 82 5 5 8 metalc 2.087 A MG 1001 B MG MG 1_555 A HOH 2058 E O HOH 1_555 metalc 2.118 A MG 1001 B MG MG 1_555 A HOH 2079 E O HOH 1_555 metalc 2.190 A MG 1001 B MG MG 1_555 A HOH 2085 E O HOH 1_555 metalc 2.082 A MG 1001 B MG MG 1_555 A HOH 2102 E O HOH 1_555 metalc 2.052 A MG 1001 B MG MG 1_555 A HOH 2114 E O HOH 1_555 metalc 2.037 A MG 1001 B MG MG 1_555 A HOH 2158 E O HOH 1_555 metalc 2.062 A MG 1002 C MG MG 1_555 A HOH 2109 E O HOH 1_555 metalc 2.095 A MG 1002 C MG MG 1_555 A HOH 2154 E O HOH 1_555 metalc 2.091 A MG 1002 C MG MG 1_555 A HOH 2162 E O HOH 1_555 metalc 1.996 A MG 1002 C MG MG 1_555 A HOH 2165 E O HOH 1_555 metalc 2.246 A MG 1002 C MG MG 1_555 A HOH 2170 E O HOH 1_555 metalc 2.110 A MG 1002 C MG MG 1_555 A HOH 2221 E O HOH 1_555 SIGNALING PROTEIN Ubiquitin-like protein, SIGNALING PROTEIN A ASP 30 A ASP 30 1 A PRO 31 A PRO 31 -0.98 URM1_YEAST UNP 1 1 P40554 MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEK DYILEDGDIISFTSTLHGG 1 99 2QJL 1 99 P40554 A 1 1 99 5 2 anti-parallel parallel anti-parallel anti-parallel anti-parallel A VAL 21 A VAL 21 A MET 26 A MET 26 A VAL 2 A VAL 2 A LEU 9 A LEU 9 A ILE 89 A ILE 89 A SER 94 A SER 94 A ILE 65 A ILE 65 A ILE 69 A ILE 69 A THR 72 A THR 72 A ASP 73 A ASP 73 A ILE 56 A ILE 56 A GLU 57 A GLU 57 A SER 60 A SER 60 A ILE 61 A ILE 61 BINDING SITE FOR RESIDUE MG A 1001 A MG 1001 Software 6 BINDING SITE FOR RESIDUE MG A 1002 A MG 1002 Software 6 BINDING SITE FOR RESIDUE EDO A 2001 A EDO 2001 Software 8 A HOH 2058 E HOH 6 1_555 A HOH 2079 E HOH 6 1_555 A HOH 2085 E HOH 6 1_555 A HOH 2102 E HOH 6 1_555 A HOH 2114 E HOH 6 1_555 A HOH 2158 E HOH 6 1_555 A HOH 2109 E HOH 6 1_555 A HOH 2154 E HOH 6 1_555 A HOH 2162 E HOH 6 1_555 A HOH 2165 E HOH 6 1_555 A HOH 2170 E HOH 6 1_555 A HOH 2221 E HOH 6 1_555 A ILE 38 A ILE 38 8 1_555 A SER 60 A SER 60 8 1_555 A ILE 61 A ILE 61 8 1_555 A TRP 74 A TRP 74 8 1_555 A LYS 80 A LYS 80 8 1_555 A HOH 2067 E HOH 8 1_555 A HOH 2179 E HOH 8 1_555 A HOH 2185 E HOH 8 1_555 18 P 21 21 2