0.012180 0.000000 0.002470 0.000000 0.026700 0.000000 0.000000 0.000000 0.014650 0.00000 0.00000 0.00000 Chruszcz, M. Xu, X. Cuff, M. Cymborowski, M. Zheng, H. Savchenko, A. Edwards, A. Joachimiak, A. 0000-0001-7075-7090 Minor, W. Midwest Center for Structural Genomics (MCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 101.48 90.00 82.095 37.454 69.636 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Febs J. 1742-464X 279 1093 1105 10.1111/j.1742-4658.2012.08506.x 22284390 Structural characterization of Helicobacter pylori dethiobiotin synthetase reveals differences between family members. 2012 0000-0001-7075-7090 10.2210/pdb2qmo/pdb pdb_00002qmo 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 MIRROR CCD 2007-04-15 ADSC QUANTUM 315 SI-111 CHANNEL SINGLE WAVELENGTH M x-ray 1 0.97918 1.0 19-ID APS 0.97918 SYNCHROTRON APS BEAMLINE 19-ID 24817.002 Dethiobiotin synthetase 6.3.3.3 1 man polymer 35.453 CHLORIDE ION 2 syn non-polymer 18.015 water 326 nat water Dethiobiotin synthase, DTB synthetase, DTBS no yes GH(MSE)LFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYR YHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEEN(MSE)LDFALKLKAK(MSE)LLIS HDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVL(MSE)SFALK GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKV SAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLL NDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK A APC5858 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Helicobacter Helicobacter pylori 26695 Escherichia sample 700392 bioD, HP_0029 85962 Helicobacter pylori 562 Escherichia coli BL21-Gold (DE3) Plasmid p11 1 2.11 41.81 VAPOR DIFFUSION VAPOR DIFFUSION, temperature 273K 273 Midwest Center for Structural Genomics MCSG PSI, Protein Structure Initiative audit_author citation_author database_2 pdbx_struct_special_symmetry struct_conn struct_ref_seq_dif struct_site repository Initial release Advisory Source and taxonomy Version format compliance Database references Database references Database references Derived calculations Structure summary 1 0 2007-07-31 1 1 2011-07-13 1 2 2012-03-28 1 3 2013-03-27 1 4 2022-04-13 _audit_author.identifier_ORCID _citation_author.identifier_ORCID _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2007-07-16 REL REL CL CHLORIDE ION HOH water CL 1 2 CL CL 301 A CL 1 2 CL CL 302 A HOH 2 3 HOH HOH 303 A HOH 2 3 HOH HOH 304 A HOH 3 3 HOH HOH 305 A HOH 3 3 HOH HOH 306 A HOH 4 3 HOH HOH 307 A HOH 4 3 HOH HOH 308 A HOH 5 3 HOH HOH 309 A HOH 5 3 HOH HOH 310 A HOH 6 3 HOH HOH 311 A HOH 6 3 HOH HOH 312 A HOH 7 3 HOH HOH 313 A HOH 8 3 HOH HOH 314 A HOH 8 3 HOH HOH 315 A HOH 9 3 HOH HOH 316 A HOH 9 3 HOH HOH 317 A HOH 10 3 HOH HOH 318 A HOH 10 3 HOH HOH 319 A HOH 12 3 HOH HOH 320 A HOH 12 3 HOH HOH 321 A HOH 13 3 HOH HOH 322 A HOH 13 3 HOH HOH 323 A HOH 15 3 HOH HOH 324 A HOH 15 3 HOH HOH 325 A HOH 16 3 HOH HOH 326 A HOH 16 3 HOH HOH 327 A HOH 17 3 HOH HOH 328 A HOH 18 3 HOH HOH 329 A HOH 18 3 HOH HOH 330 A HOH 19 3 HOH HOH 331 A HOH 19 3 HOH HOH 332 A HOH 20 3 HOH HOH 333 A HOH 21 3 HOH HOH 334 A HOH 21 3 HOH HOH 335 A HOH 23 3 HOH HOH 336 A HOH 23 3 HOH HOH 337 A HOH 24 3 HOH HOH 338 A HOH 24 3 HOH HOH 339 A HOH 25 3 HOH HOH 340 A HOH 25 3 HOH HOH 341 A HOH 26 3 HOH HOH 342 A HOH 26 3 HOH HOH 343 A HOH 27 3 HOH HOH 344 A HOH 27 3 HOH HOH 345 A HOH 28 3 HOH HOH 346 A HOH 28 3 HOH HOH 347 A HOH 30 3 HOH HOH 348 A HOH 30 3 HOH HOH 349 A HOH 31 3 HOH HOH 350 A HOH 31 3 HOH HOH 351 A HOH 32 3 HOH HOH 352 A HOH 32 3 HOH HOH 353 A HOH 33 3 HOH HOH 354 A HOH 33 3 HOH HOH 355 A HOH 34 3 HOH HOH 356 A HOH 34 3 HOH HOH 357 A HOH 35 3 HOH HOH 358 A HOH 35 3 HOH HOH 359 A HOH 36 3 HOH HOH 360 A HOH 36 3 HOH HOH 361 A HOH 37 3 HOH HOH 362 A HOH 37 3 HOH HOH 363 A HOH 38 3 HOH HOH 364 A HOH 38 3 HOH HOH 365 A HOH 39 3 HOH HOH 366 A HOH 40 3 HOH HOH 367 A HOH 41 3 HOH HOH 368 A HOH 41 3 HOH HOH 369 A HOH 42 3 HOH HOH 370 A HOH 42 3 HOH HOH 371 A HOH 43 3 HOH HOH 372 A HOH 43 3 HOH HOH 373 A HOH 44 3 HOH HOH 374 A HOH 44 3 HOH HOH 375 A HOH 45 3 HOH HOH 376 A HOH 45 3 HOH HOH 377 A HOH 47 3 HOH HOH 378 A HOH 47 3 HOH HOH 379 A HOH 48 3 HOH HOH 380 A HOH 48 3 HOH HOH 381 A HOH 49 3 HOH HOH 382 A HOH 49 3 HOH HOH 383 A HOH 50 3 HOH HOH 384 A HOH 51 3 HOH HOH 385 A HOH 52 3 HOH HOH 386 A HOH 53 3 HOH HOH 387 A HOH 54 3 HOH HOH 388 A HOH 55 3 HOH HOH 389 A HOH 56 3 HOH HOH 390 A HOH 57 3 HOH HOH 391 A HOH 58 3 HOH HOH 392 A HOH 60 3 HOH HOH 393 A HOH 61 3 HOH HOH 394 A HOH 62 3 HOH HOH 395 A HOH 63 3 HOH HOH 396 A HOH 64 3 HOH HOH 397 A HOH 65 3 HOH HOH 398 A HOH 66 3 HOH HOH 399 A HOH 67 3 HOH HOH 400 A HOH 68 3 HOH HOH 401 A HOH 69 3 HOH HOH 402 A HOH 70 3 HOH HOH 403 A HOH 71 3 HOH HOH 404 A HOH 72 3 HOH HOH 405 A HOH 73 3 HOH HOH 406 A HOH 74 3 HOH HOH 407 A HOH 75 3 HOH HOH 408 A HOH 76 3 HOH HOH 409 A HOH 77 3 HOH HOH 410 A HOH 78 3 HOH HOH 411 A HOH 79 3 HOH HOH 412 A HOH 81 3 HOH HOH 413 A HOH 83 3 HOH HOH 414 A HOH 85 3 HOH HOH 415 A HOH 86 3 HOH HOH 416 A HOH 87 3 HOH HOH 417 A HOH 88 3 HOH HOH 418 A HOH 89 3 HOH HOH 419 A HOH 90 3 HOH HOH 420 A HOH 91 3 HOH HOH 421 A HOH 92 3 HOH HOH 422 A HOH 93 3 HOH HOH 423 A HOH 94 3 HOH HOH 424 A HOH 95 3 HOH HOH 425 A HOH 96 3 HOH HOH 426 A HOH 97 3 HOH HOH 427 A HOH 98 3 HOH HOH 428 A HOH 99 3 HOH HOH 429 A HOH 100 3 HOH HOH 430 A HOH 101 3 HOH HOH 431 A HOH 102 3 HOH HOH 432 A HOH 103 3 HOH HOH 433 A HOH 104 3 HOH HOH 434 A HOH 105 3 HOH HOH 435 A HOH 106 3 HOH HOH 436 A HOH 107 3 HOH HOH 437 A HOH 108 3 HOH HOH 438 A HOH 109 3 HOH HOH 439 A HOH 110 3 HOH HOH 440 A HOH 111 3 HOH HOH 441 A HOH 112 3 HOH HOH 442 A HOH 113 3 HOH HOH 443 A HOH 114 3 HOH HOH 444 A HOH 116 3 HOH HOH 445 A HOH 118 3 HOH HOH 446 A HOH 119 3 HOH HOH 447 A HOH 120 3 HOH HOH 448 A HOH 121 3 HOH HOH 449 A HOH 122 3 HOH HOH 450 A HOH 124 3 HOH HOH 451 A HOH 125 3 HOH HOH 452 A HOH 126 3 HOH HOH 453 A HOH 127 3 HOH HOH 454 A HOH 128 3 HOH HOH 455 A HOH 129 3 HOH HOH 456 A HOH 130 3 HOH HOH 457 A HOH 131 3 HOH HOH 458 A HOH 132 3 HOH HOH 459 A HOH 133 3 HOH HOH 460 A HOH 134 3 HOH HOH 461 A HOH 135 3 HOH HOH 462 A HOH 137 3 HOH HOH 463 A HOH 138 3 HOH HOH 464 A HOH 139 3 HOH HOH 465 A HOH 140 3 HOH HOH 466 A HOH 141 3 HOH HOH 467 A HOH 142 3 HOH HOH 468 A HOH 143 3 HOH HOH 469 A HOH 144 3 HOH HOH 470 A HOH 145 3 HOH HOH 471 A HOH 146 3 HOH HOH 472 A HOH 147 3 HOH HOH 473 A HOH 148 3 HOH HOH 474 A HOH 150 3 HOH HOH 475 A HOH 151 3 HOH HOH 476 A HOH 152 3 HOH HOH 477 A HOH 153 3 HOH HOH 478 A HOH 154 3 HOH HOH 479 A HOH 155 3 HOH HOH 480 A HOH 157 3 HOH HOH 481 A HOH 158 3 HOH HOH 482 A HOH 159 3 HOH HOH 483 A HOH 160 3 HOH HOH 484 A HOH 161 3 HOH HOH 485 A HOH 163 3 HOH HOH 486 A HOH 164 3 HOH HOH 487 A HOH 165 3 HOH HOH 488 A HOH 166 3 HOH HOH 489 A HOH 167 3 HOH HOH 490 A HOH 168 3 HOH HOH 491 A HOH 169 3 HOH HOH 492 A HOH 170 3 HOH HOH 493 A HOH 171 3 HOH HOH 494 A HOH 172 3 HOH HOH 495 A HOH 173 3 HOH HOH 496 A HOH 175 3 HOH HOH 497 A HOH 178 3 HOH HOH 498 A HOH 179 3 HOH HOH 499 A HOH 180 3 HOH HOH 500 A HOH 182 3 HOH HOH 501 A HOH 183 3 HOH HOH 502 A HOH 184 3 HOH HOH 503 A HOH 187 3 HOH HOH 504 A HOH 189 3 HOH HOH 505 A HOH 190 3 HOH HOH 506 A HOH 191 3 HOH HOH 507 A HOH 192 3 HOH HOH 508 A HOH 193 3 HOH HOH 509 A HOH 194 3 HOH HOH 510 A HOH 195 3 HOH HOH 511 A HOH 196 3 HOH HOH 512 A HOH 198 3 HOH HOH 513 A HOH 199 3 HOH HOH 514 A HOH 200 3 HOH HOH 515 A HOH 201 3 HOH HOH 516 A HOH 202 3 HOH HOH 517 A HOH 203 3 HOH HOH 518 A HOH 204 3 HOH HOH 519 A HOH 206 3 HOH HOH 520 A HOH 207 3 HOH HOH 521 A HOH 208 3 HOH HOH 522 A HOH 210 3 HOH HOH 523 A HOH 211 3 HOH HOH 524 A HOH 212 3 HOH HOH 525 A HOH 213 3 HOH HOH 526 A HOH 214 3 HOH HOH 527 A HOH 215 3 HOH HOH 528 A HOH 216 3 HOH HOH 529 A HOH 217 3 HOH HOH 530 A HOH 218 3 HOH HOH 531 A HOH 219 3 HOH HOH 532 A HOH 220 3 HOH HOH 533 A HOH 221 3 HOH HOH 534 A HOH 222 3 HOH HOH 535 A HOH 223 3 HOH HOH 536 A HOH 224 3 HOH HOH 537 A HOH 225 3 HOH HOH 538 A HOH 226 3 HOH HOH 539 A HOH 227 3 HOH HOH 540 A HOH 228 3 HOH HOH 541 A HOH 229 3 HOH HOH 542 A HOH 230 3 HOH HOH 543 A HOH 231 3 HOH HOH 544 A HOH 232 3 HOH HOH 545 A HOH 233 3 HOH HOH 546 A HOH 234 3 HOH HOH 547 A HOH 235 3 HOH HOH 548 A HOH 236 3 HOH HOH 549 A HOH 237 3 HOH HOH 550 A HOH 238 3 HOH HOH 551 A HOH 239 3 HOH HOH 552 A HOH 240 3 HOH HOH 553 A HOH 241 3 HOH HOH 554 A HOH 242 3 HOH HOH 555 A HOH 243 3 HOH HOH 556 A HOH 244 3 HOH HOH 557 A HOH 245 3 HOH HOH 558 A HOH 246 3 HOH HOH 559 A HOH 247 3 HOH HOH 560 A HOH 248 3 HOH HOH 561 A HOH 249 3 HOH HOH 562 A HOH 250 3 HOH HOH 563 A HOH 251 3 HOH HOH 564 A HOH 253 3 HOH HOH 565 A HOH 254 3 HOH HOH 566 A HOH 256 3 HOH HOH 567 A HOH 257 3 HOH HOH 568 A HOH 258 3 HOH HOH 569 A HOH 259 3 HOH HOH 570 A HOH 260 3 HOH HOH 571 A HOH 261 3 HOH HOH 572 A HOH 262 3 HOH HOH 573 A HOH 263 3 HOH HOH 574 A HOH 264 3 HOH HOH 575 A HOH 265 3 HOH HOH 576 A HOH 266 3 HOH HOH 577 A HOH 267 3 HOH HOH 578 A HOH 268 3 HOH HOH 579 A HOH 269 3 HOH HOH 580 A HOH 270 3 HOH HOH 581 A HOH 271 3 HOH HOH 582 A HOH 272 3 HOH HOH 583 A HOH 273 3 HOH HOH 584 A HOH 274 3 HOH HOH 585 A HOH 275 3 HOH HOH 586 A HOH 276 3 HOH HOH 587 A HOH 277 3 HOH HOH 588 A HOH 278 3 HOH HOH 589 A HOH 280 3 HOH HOH 590 A HOH 281 3 HOH HOH 591 A HOH 282 3 HOH HOH 592 A HOH 283 3 HOH HOH 593 A HOH 284 3 HOH HOH 594 A HOH 285 3 HOH HOH 595 A HOH 286 3 HOH HOH 596 A HOH 287 3 HOH HOH 597 A HOH 288 3 HOH HOH 598 A HOH 289 3 HOH HOH 599 A HOH 290 3 HOH HOH 600 A HOH 291 3 HOH HOH 601 A HOH 292 3 HOH HOH 602 A HOH 293 3 HOH HOH 603 A HOH 294 3 HOH HOH 604 A HOH 295 3 HOH HOH 605 A HOH 296 3 HOH HOH 606 A HOH 297 3 HOH HOH 607 A HOH 298 3 HOH HOH 608 A HOH 299 3 HOH HOH 609 A HOH 300 3 HOH HOH 610 A HOH 301 3 HOH HOH 611 A HOH 302 3 HOH HOH 612 A HOH 304 3 HOH HOH 613 A HOH 305 3 HOH HOH 614 A HOH 306 3 HOH HOH 615 A HOH 307 3 HOH HOH 616 A HOH 308 3 HOH HOH 617 A HOH 309 3 HOH HOH 618 A HOH 310 3 HOH HOH 619 A HOH 312 3 HOH HOH 620 A HOH 313 3 HOH HOH 621 A HOH 315 3 HOH HOH 622 A HOH 316 3 HOH HOH 623 A HOH 1 3 HOH HOH 624 A HOH 11 3 HOH HOH 625 A HOH 14 3 HOH HOH 626 A HOH 22 3 HOH HOH 627 A HOH 29 3 HOH HOH 628 A GLY -1 n 1 GLY -1 A HIS 0 n 2 HIS 0 A MSE 1 n 3 MSE 1 A LEU 2 n 4 LEU 2 A PHE 3 n 5 PHE 3 A ILE 4 n 6 ILE 4 A SER 5 n 7 SER 5 A ALA 6 n 8 ALA 6 A THR 7 n 9 THR 7 A ASN 8 n 10 ASN 8 A THR 9 n 11 THR 9 A ASN 10 n 12 ASN 10 A ALA 11 n 13 ALA 11 A GLY 12 n 14 GLY 12 A LYS 13 n 15 LYS 13 A THR 14 n 16 THR 14 A THR 15 n 17 THR 15 A CYS 16 n 18 CYS 16 A ALA 17 n 19 ALA 17 A ARG 18 n 20 ARG 18 A LEU 19 n 21 LEU 19 A LEU 20 n 22 LEU 20 A ALA 21 n 23 ALA 21 A GLN 22 n 24 GLN 22 A TYR 23 n 25 TYR 23 A CYS 24 n 26 CYS 24 A ASN 25 n 27 ASN 25 A ALA 26 n 28 ALA 26 A CYS 27 n 29 CYS 27 A GLY 28 n 30 GLY 28 A VAL 29 n 31 VAL 29 A LYS 30 n 32 LYS 30 A THR 31 n 33 THR 31 A ILE 32 n 34 ILE 32 A LEU 33 n 35 LEU 33 A LEU 34 n 36 LEU 34 A LYS 35 n 37 LYS 35 A PRO 36 n 38 PRO 36 A ILE 37 n 39 ILE 37 A GLU 38 n 40 GLU 38 A THR 39 n 41 THR 39 A GLY 40 n 42 GLY 40 A VAL 41 n 43 VAL 41 A ASN 42 n 44 ASN 42 A ASP 43 n 45 ASP 43 A ALA 44 n 46 ALA 44 A ILE 45 n 47 ILE 45 A ASN 46 n 48 ASN 46 A HIS 47 n 49 HIS 47 A SER 48 n 50 SER 48 A SER 49 n 51 SER 49 A ASP 50 n 52 ASP 50 A ALA 51 n 53 ALA 51 A HIS 52 n 54 HIS 52 A LEU 53 n 55 LEU 53 A PHE 54 n 56 PHE 54 A LEU 55 n 57 LEU 55 A GLN 56 n 58 GLN 56 A ASP 57 n 59 ASP 57 A ASN 58 n 60 ASN 58 A ARG 59 n 61 ARG 59 A LEU 60 n 62 LEU 60 A LEU 61 n 63 LEU 61 A ASP 62 n 64 ASP 62 A ARG 63 n 65 ARG 63 A SER 64 n 66 SER 64 A LEU 65 n 67 LEU 65 A THR 66 n 68 THR 66 A LEU 67 n 69 LEU 67 A LYS 68 n 70 LYS 68 A ASP 69 n 71 ASP 69 A ILE 70 n 72 ILE 70 A SER 71 n 73 SER 71 A PHE 72 n 74 PHE 72 A TYR 73 n 75 TYR 73 A ARG 74 n 76 ARG 74 A TYR 75 n 77 TYR 75 A HIS 76 n 78 HIS 76 A LYS 77 n 79 LYS 77 A VAL 78 n 80 VAL 78 A SER 79 n 81 SER 79 A ALA 80 n 82 ALA 80 A PRO 81 n 83 PRO 81 A LEU 82 n 84 LEU 82 A ILE 83 n 85 ILE 83 A ALA 84 n 86 ALA 84 A GLN 85 n 87 GLN 85 A GLN 86 n 88 GLN 86 A GLU 87 n 89 GLU 87 A GLU 88 n 90 GLU 88 A ASP 89 n 91 ASP 89 A PRO 90 n 92 PRO 90 A ASN 91 n 93 ASN 91 A ALA 92 n 94 ALA 92 A PRO 93 n 95 PRO 93 A ILE 94 n 96 ILE 94 A ASP 95 n 97 ASP 95 A THR 96 n 98 THR 96 A ASP 97 n 99 ASP 97 A ASN 98 n 100 ASN 98 A LEU 99 n 101 LEU 99 A THR 100 n 102 THR 100 A GLN 101 n 103 GLN 101 A ARG 102 n 104 ARG 102 A LEU 103 n 105 LEU 103 A HIS 104 n 106 HIS 104 A ASN 105 n 107 ASN 105 A PHE 106 n 108 PHE 106 A THR 107 n 109 THR 107 A LYS 108 n 110 LYS 108 A THR 109 n 111 THR 109 A TYR 110 n 112 TYR 110 A ASP 111 n 113 ASP 111 A LEU 112 n 114 LEU 112 A VAL 113 n 115 VAL 113 A ILE 114 n 116 ILE 114 A VAL 115 n 117 VAL 115 A GLU 116 n 118 GLU 116 A GLY 117 n 119 GLY 117 A ALA 118 n 120 ALA 118 A GLY 119 n 121 GLY 119 A GLY 120 n 122 GLY 120 A LEU 121 n 123 LEU 121 A CYS 122 n 124 CYS 122 A VAL 123 n 125 VAL 123 A PRO 124 n 126 PRO 124 A ILE 125 n 127 ILE 125 A THR 126 n 128 THR 126 A LEU 127 n 129 LEU 127 A GLU 128 n 130 GLU 128 A GLU 129 n 131 GLU 129 A ASN 130 n 132 ASN 130 A MSE 131 n 133 MSE 131 A LEU 132 n 134 LEU 132 A ASP 133 n 135 ASP 133 A PHE 134 n 136 PHE 134 A ALA 135 n 137 ALA 135 A LEU 136 n 138 LEU 136 A LYS 137 n 139 LYS 137 A LEU 138 n 140 LEU 138 A LYS 139 n 141 LYS 139 A ALA 140 n 142 ALA 140 A LYS 141 n 143 LYS 141 A MSE 142 n 144 MSE 142 A LEU 143 n 145 LEU 143 A LEU 144 n 146 LEU 144 A ILE 145 n 147 ILE 145 A SER 146 n 148 SER 146 A HIS 147 n 149 HIS 147 A ASP 148 n 150 ASP 148 A ASN 149 n 151 ASN 149 A LEU 150 n 152 LEU 150 A GLY 151 n 153 GLY 151 A LEU 152 n 154 LEU 152 A ILE 153 n 155 ILE 153 A ASN 154 n 156 ASN 154 A ASP 155 n 157 ASP 155 A CYS 156 n 158 CYS 156 A LEU 157 n 159 LEU 157 A LEU 158 n 160 LEU 158 A ASN 159 n 161 ASN 159 A ASP 160 n 162 ASP 160 A PHE 161 n 163 PHE 161 A LEU 162 n 164 LEU 162 A LEU 163 n 165 LEU 163 A LYS 164 n 166 LYS 164 A SER 165 n 167 SER 165 A HIS 166 n 168 HIS 166 A GLN 167 n 169 GLN 167 A LEU 168 n 170 LEU 168 A ASP 169 n 171 ASP 169 A TYR 170 n 172 TYR 170 A LYS 171 n 173 LYS 171 A ILE 172 n 174 ILE 172 A ALA 173 n 175 ALA 173 A ILE 174 n 176 ILE 174 A ASN 175 n 177 ASN 175 A LEU 176 n 178 LEU 176 A LYS 177 n 179 LYS 177 A GLY 178 n 180 GLY 178 A ASN 179 n 181 ASN 179 A ASN 180 n 182 ASN 180 A THR 181 n 183 THR 181 A ALA 182 n 184 ALA 182 A PHE 183 n 185 PHE 183 A HIS 184 n 186 HIS 184 A SER 185 n 187 SER 185 A ILE 186 n 188 ILE 186 A SER 187 n 189 SER 187 A LEU 188 n 190 LEU 188 A PRO 189 n 191 PRO 189 A TYR 190 n 192 TYR 190 A ILE 191 n 193 ILE 191 A GLU 192 n 194 GLU 192 A LEU 193 n 195 LEU 193 A PHE 194 n 196 PHE 194 A ASN 195 n 197 ASN 195 A THR 196 n 198 THR 196 A ARG 197 n 199 ARG 197 A SER 198 n 200 SER 198 A ASN 199 n 201 ASN 199 A ASN 200 n 202 ASN 200 A PRO 201 n 203 PRO 201 A ILE 202 n 204 ILE 202 A VAL 203 n 205 VAL 203 A ILE 204 n 206 ILE 204 A PHE 205 n 207 PHE 205 A GLN 206 n 208 GLN 206 A GLN 207 n 209 GLN 207 A SER 208 n 210 SER 208 A LEU 209 n 211 LEU 209 A LYS 210 n 212 LYS 210 A VAL 211 n 213 VAL 211 A LEU 212 n 214 LEU 212 A MSE 213 n 215 MSE 213 A SER 214 n 216 SER 214 A PHE 215 n 217 PHE 215 A ALA 216 n 218 ALA 216 A LEU 217 n 219 LEU 217 A LYS 218 n 220 LYS 218 A 2.1913 0.0637 0.2132 0.2299 -0.1989 1.3927 0.0578 0.0404 -0.1815 -0.0768 0.0010 0.0380 0.1709 -0.0127 -0.0588 -0.0095 0.0035 -0.0148 -0.0372 0.0026 -0.0020 refined 26.6160 9.5830 15.1480 X-RAY DIFFRACTION 3.1778 0.3137 1.2460 0.5989 0.2891 2.4612 0.1613 0.2623 -0.3739 -0.1068 -0.0484 0.0294 0.2864 0.1082 -0.1129 -0.0031 0.0362 -0.0244 -0.0446 -0.0391 -0.0257 refined 32.5960 5.4910 7.4730 X-RAY DIFFRACTION 4.9923 -2.5904 -0.7114 4.3767 0.7719 0.2843 0.1872 0.2620 0.0753 -0.2477 -0.2695 -0.2831 0.0542 0.2197 0.0822 -0.0335 0.0477 -0.0037 0.0200 0.0304 -0.0246 refined 49.0620 12.4710 15.2500 X-RAY DIFFRACTION 14.0341 0.4352 7.4310 3.1263 -0.0497 5.0128 0.0319 0.4957 0.1761 -0.0524 -0.0682 -0.1106 0.0412 0.1172 0.0363 -0.0273 -0.0029 0.0177 0.0124 0.0439 -0.0378 refined 35.6970 21.5490 7.2280 X-RAY DIFFRACTION 1.7296 -0.2496 0.8431 0.8111 -0.2328 0.9701 -0.0176 0.1019 0.1084 -0.0185 -0.0040 -0.0213 -0.0471 0.0480 0.0217 -0.0329 0.0060 0.0058 -0.0334 0.0170 -0.0141 refined 32.6780 19.5630 15.5570 X-RAY DIFFRACTION 0.9718 0.1537 0.2767 0.0383 -0.0997 1.5518 0.0044 -0.0180 0.0013 0.0505 -0.0060 -0.0468 -0.0793 -0.0404 0.0016 -0.0209 0.0115 0.0017 -0.0284 0.0007 0.0044 refined 25.6270 14.4810 30.7540 X-RAY DIFFRACTION 0.4622 0.3319 -0.0215 2.4960 0.1369 1.6210 0.0487 -0.0182 0.0629 0.0850 -0.0671 -0.0736 -0.0811 -0.0908 0.0185 -0.0527 0.0040 0.0028 -0.0276 -0.0071 -0.0029 refined 17.5090 14.8960 37.6540 X-RAY DIFFRACTION 1.0240 -0.1837 0.1237 4.9151 -3.0266 3.0065 0.0886 0.1171 0.0474 -0.0684 0.0599 0.1763 0.0283 -0.1245 -0.1485 -0.0573 0.0005 0.0051 -0.0029 0.0119 -0.0036 refined 15.1030 15.3550 21.2560 X-RAY DIFFRACTION A -1 A 1 A 45 A 47 X-RAY DIFFRACTION 1 A 46 A 48 A 78 A 80 X-RAY DIFFRACTION 2 A 79 A 81 A 94 A 96 X-RAY DIFFRACTION 3 A 95 A 97 A 105 A 107 X-RAY DIFFRACTION 4 A 106 A 108 A 141 A 143 X-RAY DIFFRACTION 5 A 142 A 144 A 181 A 183 X-RAY DIFFRACTION 6 A 182 A 184 A 203 A 205 X-RAY DIFFRACTION 7 A 204 A 206 A 218 A 220 X-RAY DIFFRACTION 8 author_and_software_defined_assembly PISA 2 dimeric 3540 A MSE 1 SELENOMETHIONINE A MSE 3 MET A MSE 131 SELENOMETHIONINE A MSE 133 MET A MSE 142 SELENOMETHIONINE A MSE 144 MET A MSE 213 SELENOMETHIONINE A MSE 215 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_656 -x+1,y,-z+1 crystal symmetry operation 68.2356349326 0.0000000000 68.2428787195 A N LEU 34 A N LEU 36 A O GLU 116 A O GLU 118 A O VAL 115 A O VAL 117 A N LEU 2 A N LEU 4 A N PHE 3 A N PHE 5 A O LYS 141 A O LYS 143 A N LEU 144 A N LEU 146 A O LYS 171 A O LYS 173 A N ILE 174 A N ILE 176 A O VAL 203 A O VAL 205 A N GLU 38 A N GLU 40 A O TYR 73 A O TYR 75 1 A HOH 313 D HOH 1 A ASP 62 -161.69 105.11 1 A SER 79 A -65.19 -173.72 16.37 -0.71000 0.00000 -0.58000 -0.16000 0.00000 0.64000 0.975 0.967 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. COOT program has also been used in refinement. 0.179 0.148 0.150 0.150 1.47 50.00 1769 35272 35272 5.000 99.030 2.190 0.043 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.000 0 SAD 0.065 0.068 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 1.47 50.00 326 2057 2 0 1729 0.018 0.022 1849 0.005 0.020 1701 1.715 1.974 2528 0.876 3.000 3980 5.866 5.000 241 35.920 25.443 79 11.294 15.000 332 23.228 15.000 6 0.118 0.200 303 0.008 0.020 2091 0.003 0.020 347 0.231 0.200 383 0.200 0.200 1693 0.184 0.200 937 0.088 0.200 960 0.163 0.200 201 0.105 0.200 6 0.241 0.200 56 0.162 0.200 31 1.537 1.500 1400 0.356 1.500 466 1.655 2.000 1902 2.896 3.000 742 4.139 4.500 626 0.288 0.211 1.51 119 2298 20 91.35 19.80 1.470 50.000 2QMO 35286 35286 -3.000 0.069 0.069 1 48.7540 7.700 99.0 0.444 1.47 1.52 3.10 0.444 1 5.20 91.3 phasing HKL-3000 phasing MLPHARE model building DM phasing SHELXD model building ARP/wARP refinement REFMAC 5.2.0005 data collection HKL-3000 data reduction HKL-2000 data scaling HKL-2000 phasing DM model building SHELXE phasing RESOLVE model building O model building Coot phasing CCP4 Crystal structure of dethiobiotin synthetase (bioD) from Helicobacter pylori 1 N N 2 N N 2 N N 3 N N A GLY 12 A GLY 14 HELX_P A CYS 27 A CYS 29 1 1 16 A SER 49 A SER 51 HELX_P A ARG 59 A ARG 61 1 2 11 A THR 66 A THR 68 HELX_P A SER 71 A SER 73 1 3 6 A ALA 80 A ALA 82 HELX_P A ASP 89 A ASP 91 1 4 10 A ASP 95 A ASP 97 HELX_P A PHE 106 A PHE 108 1 5 12 A THR 107 A THR 109 HELX_P A THR 109 A THR 111 5 6 3 A ASN 130 A ASN 132 HELX_P A LYS 139 A LYS 141 1 7 10 A GLY 151 A GLY 153 HELX_P A SER 165 A SER 167 1 8 15 A ALA 182 A ALA 184 HELX_P A SER 187 A SER 189 1 9 6 A SER 187 A SER 189 HELX_P A SER 198 A SER 200 1 10 12 A SER 208 A SER 210 HELX_P A LYS 218 A LYS 220 1 11 11 covale 1.315 both A HIS 0 A C HIS 2 1_555 A MSE 1 A N MSE 3 1_555 covale 1.329 both A MSE 1 A C MSE 3 1_555 A LEU 2 A N LEU 4 1_555 covale 1.338 both A ASN 130 A C ASN 132 1_555 A MSE 131 A N MSE 133 1_555 covale 1.322 both A MSE 131 A C MSE 133 1_555 A LEU 132 A N LEU 134 1_555 covale 1.325 both A LYS 141 A C LYS 143 1_555 A MSE 142 A N MSE 144 1_555 covale 1.342 both A MSE 142 A C MSE 144 1_555 A LEU 143 A N LEU 145 1_555 covale 1.338 both A LEU 212 A C LEU 214 1_555 A MSE 213 A N MSE 215 1_555 covale 1.353 both A MSE 213 A C MSE 215 1_555 A SER 214 A N SER 216 1_555 LIGASE dethiobiotin synthetase, structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, ATP-binding, Biotin biosynthesis, Ligase, Magnesium, Nucleotide-binding A GLY -1 A GLY 1 1 A HIS 0 A HIS 2 -3.27 BIOD_HELPY UNP 1 1 O24872 MLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSA PLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLND FLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK 1 218 2QMO 1 218 O24872 A 1 3 220 1 expression tag GLY -1 2QMO A O24872 UNP 1 1 expression tag HIS 0 2QMO A O24872 UNP 2 1 MET modified residue MSE 1 2QMO A O24872 UNP 1 3 1 MET modified residue MSE 131 2QMO A O24872 UNP 131 133 1 MET modified residue MSE 142 2QMO A O24872 UNP 142 144 1 MET modified residue MSE 213 2QMO A O24872 UNP 213 215 6 2 parallel parallel parallel parallel parallel parallel A THR 31 A THR 33 A LEU 34 A LEU 36 A LEU 112 A LEU 114 A GLU 116 A GLU 118 A MSE 1 A MSE 3 A ALA 6 A ALA 8 A LYS 141 A LYS 143 A SER 146 A SER 148 A TYR 170 A TYR 172 A ILE 174 A ILE 176 A VAL 203 A VAL 205 A ILE 204 A ILE 206 A ILE 37 A ILE 39 A GLU 38 A GLU 40 A TYR 73 A TYR 75 A ARG 74 A ARG 76 BINDING SITE FOR RESIDUE CL A 301 A CL 301 Software 4 BINDING SITE FOR RESIDUE CL A 302 A CL 302 Software 3 A GLY 151 A GLY 153 4 1_555 A LEU 152 A LEU 154 4 1_555 A ILE 153 A ILE 155 4 1_555 A SER 187 A SER 189 4 1_555 A LYS 13 A LYS 15 3 1_555 A THR 14 A THR 16 3 1_555 A HOH 517 D HOH 3 1_555 5 C 1 2 1