0.018660
0.000000
0.003870
0.000000
0.026248
0.000000
0.000000
0.000000
0.013432
0.000000
0.000000
0.000000
Davis, T.
Walker, J.R.
Newman, E.M.
Mackenzie, F.
Butler-Cole, C.
Weigelt, J.
Sundstrom, M.
Arrowsmith, C.H.
Edwards, A.M.
Bochkarev, A.
Dhe-Paganon, S.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.000
101.720
90.000
53.590
38.098
76.031
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O S
78.133
BETA-MERCAPTOETHANOL
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C9 H12 N O6 P
261.168
n
O-PHOSPHOTYROSINE
PHOSPHONOTYROSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
C
N
76
N
O
N
77
N
S
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
N
N
85
R
C
N
86
N
C
N
87
N
O
N
88
N
C
N
89
N
S
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
S
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
N
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
N
N
119
S
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
O
N
126
N
O
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
N
C
Y
152
N
C
Y
153
N
N
Y
154
N
C
Y
155
N
C
Y
156
N
N
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
N
N
172
S
C
N
173
N
C
N
174
N
O
N
175
S
C
N
176
N
C
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
N
N
194
S
C
N
195
N
C
N
196
N
O
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
N
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
N
245
N
C
N
246
N
S
N
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
O
N
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
N
312
N
O
N
313
N
P
N
314
N
O
N
315
N
O
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
N
C
N
334
N
O
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
R
C
N
348
N
O
N
349
N
C
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
N
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
N
N
388
S
C
N
389
N
C
N
390
N
O
N
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
N
398
N
O
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
N
416
N
C
N
417
N
C
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
Y
149
N
sing
Y
150
N
doub
Y
151
N
doub
N
152
N
sing
Y
153
N
sing
N
154
N
sing
Y
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
Y
257
N
doub
Y
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
doub
N
262
N
sing
Y
263
N
doub
N
264
N
sing
Y
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
Y
355
N
doub
Y
356
N
sing
Y
357
N
sing
N
358
N
sing
Y
359
N
doub
Y
360
N
sing
Y
361
N
sing
N
362
N
sing
Y
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
doub
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
Y
383
N
doub
Y
384
N
sing
Y
385
N
sing
N
386
N
sing
Y
387
N
doub
N
388
N
sing
Y
389
N
doub
N
390
N
sing
Y
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
UK
Structure
STRUE6
2005
0969-2126
16
873
884
10.1016/j.str.2008.03.008
18547520
Autoregulation by the Juxtamembrane Region of the Human Ephrin Receptor Tyrosine Kinase A3 (EphA3).
2008
10.2210/pdb2qob/pdb
pdb_00002qob
200
1
IMAGE PLATE
2006-06-15
RIGAKU RAXIS IV
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
21.90
120710
0.040
1.15
1.650
30.000
35397
96.70
3.40
1.5418
ROTATING ANODE
RIGAKU FR-E+ SUPERBRIGHT
38649.078
Ephrin receptor
2.7.10.1
Kinase domain: Residues 606-947
1
man
polymer
78.133
BETA-MERCAPTOETHANOL
1
syn
non-polymer
18.015
water
304
nat
water
no
yes
GSTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNII
RLEGVVTKSKPVMIVTE(PTR)MENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLV
CKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDE
GYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLLDQSNVDITTFRTTGDW
LNGVWTAHCKEIFTGVEYSSCDTIAKIS
GSTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNII
RLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVS
DFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRL
PPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLLDQSNVDITTFRTTGDWLNGV
WTAHCKEIFTGVEYSSCDTIAKIS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Placenta
Escherichia
Escherichia coli
sample
EPHA3
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
Plasmid
pET28a-LIC
1
1.97
37.45
VAPOR DIFFUSION, SITTING DROP
7.5
20 mg/mL Protein, 25% PEG 3350, 0.2M Ammonium sulfate, 0.1M Hepes, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
Structural Genomics Consortium
SGC
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
Data collection
1
0
2007-08-21
1
1
2011-07-13
1
2
2017-10-25
1
3
2023-08-30
1
4
2023-11-15
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
The Human Epha3 Receptor Tyrosine Kinase and Juxtamembrane Region
Human EphA3 kinase and juxtamembrane region, dephosphorylated, apo structure
Human EphA3 kinase and juxtamembrane region, dephosphorylated, AMP-PNP bound
Human EphA3 kinase and juxtamembrane region, phosphorylated, AMP-PNP bound
Human EphA3 kinase domain, phosphorylated, AMP-PNP bound structure
Human EphA3 kinase and juxtamembrane region, Y602F mutant
Human EphA3 kinase and juxtamembrane region, Y596F mutant
Human EphA3 kinase and juxtamembrane region, Y596F:Y602F double mutant
Human EphA3 kinase and juxtamembrane region, Y596F:Y602F:S768A triple mutant
Human EphA3 kinase and juxtamembrane region, Y596:Y602:S768G triple mutant
Human EphA3 kinase and juxtamembrane region, Y596F:Y602F:Y742A triple mutant
Human EphA3 kinase and juxtamembrane region, Y596F:Y602F:Y742F triple mutant
Human EphA3 kinase and juxtamembrane region, base, AMP-PNP bound structure
Y
RCSB
Y
RCSB
2007-07-20
REL
REL
0.028
1.139
99.60
3.50
0.033
1.300
99.50
3.60
0.034
1.055
99.70
3.60
0.038
1.101
99.60
3.60
0.042
1.138
99.30
3.60
0.046
1.208
99.60
3.60
0.049
1.211
99.70
3.60
0.052
1.250
99.60
3.50
0.055
1.229
99.70
3.50
0.060
1.249
99.40
3.50
0.068
1.234
99.20
3.50
0.077
1.203
98.60
3.50
0.091
1.089
99.40
3.50
0.099
1.138
98.00
3.50
0.117
1.031
99.60
3.50
0.133
1.117
97.10
3.50
0.144
1.067
99.30
3.40
0.159
1.149
92.50
2.90
0.172
1.007
83.90
2.40
0.181
0.996
69.90
2.30
BME
BETA-MERCAPTOETHANOL
HOH
water
2GSF
PDB entry 2GSF
PDB
experimental model
BME
1
2
BME
BME
1
A
HOH
1
3
HOH
HOH
948
A
HOH
2
3
HOH
HOH
949
A
HOH
3
3
HOH
HOH
950
A
HOH
4
3
HOH
HOH
951
A
HOH
5
3
HOH
HOH
952
A
HOH
6
3
HOH
HOH
953
A
HOH
7
3
HOH
HOH
954
A
HOH
8
3
HOH
HOH
955
A
HOH
9
3
HOH
HOH
956
A
HOH
10
3
HOH
HOH
957
A
HOH
11
3
HOH
HOH
958
A
HOH
12
3
HOH
HOH
959
A
HOH
13
3
HOH
HOH
960
A
HOH
14
3
HOH
HOH
961
A
HOH
15
3
HOH
HOH
962
A
HOH
16
3
HOH
HOH
963
A
HOH
17
3
HOH
HOH
964
A
HOH
18
3
HOH
HOH
965
A
HOH
19
3
HOH
HOH
966
A
HOH
20
3
HOH
HOH
967
A
HOH
21
3
HOH
HOH
968
A
HOH
22
3
HOH
HOH
969
A
HOH
23
3
HOH
HOH
970
A
HOH
24
3
HOH
HOH
971
A
HOH
25
3
HOH
HOH
972
A
HOH
26
3
HOH
HOH
973
A
HOH
27
3
HOH
HOH
974
A
HOH
28
3
HOH
HOH
975
A
HOH
29
3
HOH
HOH
976
A
HOH
30
3
HOH
HOH
977
A
HOH
31
3
HOH
HOH
978
A
HOH
32
3
HOH
HOH
979
A
HOH
33
3
HOH
HOH
980
A
HOH
34
3
HOH
HOH
981
A
HOH
35
3
HOH
HOH
982
A
HOH
36
3
HOH
HOH
983
A
HOH
37
3
HOH
HOH
984
A
HOH
38
3
HOH
HOH
985
A
HOH
39
3
HOH
HOH
986
A
HOH
40
3
HOH
HOH
987
A
HOH
41
3
HOH
HOH
988
A
HOH
42
3
HOH
HOH
989
A
HOH
43
3
HOH
HOH
990
A
HOH
44
3
HOH
HOH
991
A
HOH
45
3
HOH
HOH
992
A
HOH
46
3
HOH
HOH
993
A
HOH
47
3
HOH
HOH
994
A
HOH
48
3
HOH
HOH
995
A
HOH
49
3
HOH
HOH
996
A
HOH
50
3
HOH
HOH
997
A
HOH
51
3
HOH
HOH
998
A
HOH
52
3
HOH
HOH
999
A
HOH
53
3
HOH
HOH
1000
A
HOH
54
3
HOH
HOH
1001
A
HOH
55
3
HOH
HOH
1002
A
HOH
56
3
HOH
HOH
1003
A
HOH
57
3
HOH
HOH
1004
A
HOH
58
3
HOH
HOH
1005
A
HOH
59
3
HOH
HOH
1006
A
HOH
60
3
HOH
HOH
1007
A
HOH
61
3
HOH
HOH
1008
A
HOH
62
3
HOH
HOH
1009
A
HOH
63
3
HOH
HOH
1010
A
HOH
64
3
HOH
HOH
1011
A
HOH
65
3
HOH
HOH
1012
A
HOH
66
3
HOH
HOH
1013
A
HOH
67
3
HOH
HOH
1014
A
HOH
68
3
HOH
HOH
1015
A
HOH
69
3
HOH
HOH
1016
A
HOH
70
3
HOH
HOH
1017
A
HOH
71
3
HOH
HOH
1018
A
HOH
72
3
HOH
HOH
1019
A
HOH
73
3
HOH
HOH
1020
A
HOH
74
3
HOH
HOH
1021
A
HOH
75
3
HOH
HOH
1022
A
HOH
76
3
HOH
HOH
1023
A
HOH
77
3
HOH
HOH
1024
A
HOH
78
3
HOH
HOH
1025
A
HOH
79
3
HOH
HOH
1026
A
HOH
80
3
HOH
HOH
1027
A
HOH
81
3
HOH
HOH
1028
A
HOH
82
3
HOH
HOH
1029
A
HOH
83
3
HOH
HOH
1030
A
HOH
84
3
HOH
HOH
1031
A
HOH
85
3
HOH
HOH
1032
A
HOH
86
3
HOH
HOH
1033
A
HOH
87
3
HOH
HOH
1034
A
HOH
88
3
HOH
HOH
1035
A
HOH
89
3
HOH
HOH
1036
A
HOH
90
3
HOH
HOH
1037
A
HOH
91
3
HOH
HOH
1038
A
HOH
92
3
HOH
HOH
1039
A
HOH
93
3
HOH
HOH
1040
A
HOH
94
3
HOH
HOH
1041
A
HOH
95
3
HOH
HOH
1042
A
HOH
96
3
HOH
HOH
1043
A
HOH
97
3
HOH
HOH
1044
A
HOH
98
3
HOH
HOH
1045
A
HOH
99
3
HOH
HOH
1046
A
HOH
100
3
HOH
HOH
1047
A
HOH
101
3
HOH
HOH
1048
A
HOH
102
3
HOH
HOH
1049
A
HOH
103
3
HOH
HOH
1050
A
HOH
104
3
HOH
HOH
1051
A
HOH
105
3
HOH
HOH
1052
A
HOH
106
3
HOH
HOH
1053
A
HOH
107
3
HOH
HOH
1054
A
HOH
108
3
HOH
HOH
1055
A
HOH
109
3
HOH
HOH
1056
A
HOH
110
3
HOH
HOH
1057
A
HOH
111
3
HOH
HOH
1058
A
HOH
112
3
HOH
HOH
1059
A
HOH
113
3
HOH
HOH
1060
A
HOH
114
3
HOH
HOH
1061
A
HOH
115
3
HOH
HOH
1062
A
HOH
116
3
HOH
HOH
1063
A
HOH
117
3
HOH
HOH
1064
A
HOH
118
3
HOH
HOH
1065
A
HOH
119
3
HOH
HOH
1066
A
HOH
120
3
HOH
HOH
1067
A
HOH
121
3
HOH
HOH
1068
A
HOH
122
3
HOH
HOH
1069
A
HOH
123
3
HOH
HOH
1070
A
HOH
124
3
HOH
HOH
1071
A
HOH
125
3
HOH
HOH
1072
A
HOH
126
3
HOH
HOH
1073
A
HOH
127
3
HOH
HOH
1074
A
HOH
128
3
HOH
HOH
1075
A
HOH
129
3
HOH
HOH
1076
A
HOH
130
3
HOH
HOH
1077
A
HOH
131
3
HOH
HOH
1078
A
HOH
132
3
HOH
HOH
1079
A
HOH
133
3
HOH
HOH
1080
A
HOH
134
3
HOH
HOH
1081
A
HOH
135
3
HOH
HOH
1082
A
HOH
136
3
HOH
HOH
1083
A
HOH
137
3
HOH
HOH
1084
A
HOH
138
3
HOH
HOH
1085
A
HOH
139
3
HOH
HOH
1086
A
HOH
140
3
HOH
HOH
1087
A
HOH
141
3
HOH
HOH
1088
A
HOH
142
3
HOH
HOH
1089
A
HOH
143
3
HOH
HOH
1090
A
HOH
144
3
HOH
HOH
1091
A
HOH
145
3
HOH
HOH
1092
A
HOH
146
3
HOH
HOH
1093
A
HOH
147
3
HOH
HOH
1094
A
HOH
148
3
HOH
HOH
1095
A
HOH
149
3
HOH
HOH
1096
A
HOH
150
3
HOH
HOH
1097
A
HOH
151
3
HOH
HOH
1098
A
HOH
152
3
HOH
HOH
1099
A
HOH
153
3
HOH
HOH
1100
A
HOH
154
3
HOH
HOH
1101
A
HOH
155
3
HOH
HOH
1102
A
HOH
156
3
HOH
HOH
1103
A
HOH
157
3
HOH
HOH
1104
A
HOH
158
3
HOH
HOH
1105
A
HOH
159
3
HOH
HOH
1106
A
HOH
160
3
HOH
HOH
1107
A
HOH
161
3
HOH
HOH
1108
A
HOH
162
3
HOH
HOH
1109
A
HOH
163
3
HOH
HOH
1110
A
HOH
164
3
HOH
HOH
1111
A
HOH
165
3
HOH
HOH
1112
A
HOH
166
3
HOH
HOH
1113
A
HOH
167
3
HOH
HOH
1114
A
HOH
168
3
HOH
HOH
1115
A
HOH
169
3
HOH
HOH
1116
A
HOH
170
3
HOH
HOH
1117
A
HOH
171
3
HOH
HOH
1118
A
HOH
172
3
HOH
HOH
1119
A
HOH
173
3
HOH
HOH
1120
A
HOH
174
3
HOH
HOH
1121
A
HOH
175
3
HOH
HOH
1122
A
HOH
176
3
HOH
HOH
1123
A
HOH
177
3
HOH
HOH
1124
A
HOH
178
3
HOH
HOH
1125
A
HOH
179
3
HOH
HOH
1126
A
HOH
180
3
HOH
HOH
1127
A
HOH
181
3
HOH
HOH
1128
A
HOH
182
3
HOH
HOH
1129
A
HOH
183
3
HOH
HOH
1130
A
HOH
184
3
HOH
HOH
1131
A
HOH
185
3
HOH
HOH
1132
A
HOH
186
3
HOH
HOH
1133
A
HOH
187
3
HOH
HOH
1134
A
HOH
188
3
HOH
HOH
1135
A
HOH
189
3
HOH
HOH
1136
A
HOH
190
3
HOH
HOH
1137
A
HOH
191
3
HOH
HOH
1138
A
HOH
192
3
HOH
HOH
1139
A
HOH
193
3
HOH
HOH
1140
A
HOH
194
3
HOH
HOH
1141
A
HOH
195
3
HOH
HOH
1142
A
HOH
196
3
HOH
HOH
1143
A
HOH
197
3
HOH
HOH
1144
A
HOH
198
3
HOH
HOH
1145
A
HOH
199
3
HOH
HOH
1146
A
HOH
200
3
HOH
HOH
1147
A
HOH
201
3
HOH
HOH
1148
A
HOH
202
3
HOH
HOH
1149
A
HOH
203
3
HOH
HOH
1150
A
HOH
204
3
HOH
HOH
1151
A
HOH
205
3
HOH
HOH
1152
A
HOH
206
3
HOH
HOH
1153
A
HOH
207
3
HOH
HOH
1154
A
HOH
208
3
HOH
HOH
1155
A
HOH
209
3
HOH
HOH
1156
A
HOH
210
3
HOH
HOH
1157
A
HOH
211
3
HOH
HOH
1158
A
HOH
212
3
HOH
HOH
1159
A
HOH
213
3
HOH
HOH
1160
A
HOH
214
3
HOH
HOH
1161
A
HOH
215
3
HOH
HOH
1162
A
HOH
216
3
HOH
HOH
1163
A
HOH
217
3
HOH
HOH
1164
A
HOH
218
3
HOH
HOH
1165
A
HOH
219
3
HOH
HOH
1166
A
HOH
220
3
HOH
HOH
1167
A
HOH
221
3
HOH
HOH
1168
A
HOH
222
3
HOH
HOH
1169
A
HOH
223
3
HOH
HOH
1170
A
HOH
224
3
HOH
HOH
1171
A
HOH
225
3
HOH
HOH
1172
A
HOH
226
3
HOH
HOH
1173
A
HOH
227
3
HOH
HOH
1174
A
HOH
228
3
HOH
HOH
1175
A
HOH
229
3
HOH
HOH
1176
A
HOH
230
3
HOH
HOH
1177
A
HOH
231
3
HOH
HOH
1178
A
HOH
232
3
HOH
HOH
1179
A
HOH
233
3
HOH
HOH
1180
A
HOH
234
3
HOH
HOH
1181
A
HOH
235
3
HOH
HOH
1182
A
HOH
236
3
HOH
HOH
1183
A
HOH
237
3
HOH
HOH
1184
A
HOH
238
3
HOH
HOH
1185
A
HOH
239
3
HOH
HOH
1186
A
HOH
240
3
HOH
HOH
1187
A
HOH
241
3
HOH
HOH
1188
A
HOH
242
3
HOH
HOH
1189
A
HOH
243
3
HOH
HOH
1190
A
HOH
244
3
HOH
HOH
1191
A
HOH
245
3
HOH
HOH
1192
A
HOH
246
3
HOH
HOH
1193
A
HOH
247
3
HOH
HOH
1194
A
HOH
248
3
HOH
HOH
1195
A
HOH
249
3
HOH
HOH
1196
A
HOH
250
3
HOH
HOH
1197
A
HOH
251
3
HOH
HOH
1198
A
HOH
252
3
HOH
HOH
1199
A
HOH
253
3
HOH
HOH
1200
A
HOH
254
3
HOH
HOH
1201
A
HOH
255
3
HOH
HOH
1202
A
HOH
256
3
HOH
HOH
1203
A
HOH
257
3
HOH
HOH
1204
A
HOH
258
3
HOH
HOH
1205
A
HOH
259
3
HOH
HOH
1206
A
HOH
260
3
HOH
HOH
1207
A
HOH
261
3
HOH
HOH
1208
A
HOH
262
3
HOH
HOH
1209
A
HOH
263
3
HOH
HOH
1210
A
HOH
264
3
HOH
HOH
1211
A
HOH
265
3
HOH
HOH
1212
A
HOH
266
3
HOH
HOH
1213
A
HOH
267
3
HOH
HOH
1214
A
HOH
268
3
HOH
HOH
1215
A
HOH
269
3
HOH
HOH
1216
A
HOH
270
3
HOH
HOH
1217
A
HOH
271
3
HOH
HOH
1218
A
HOH
272
3
HOH
HOH
1219
A
HOH
273
3
HOH
HOH
1220
A
HOH
274
3
HOH
HOH
1221
A
HOH
275
3
HOH
HOH
1222
A
HOH
276
3
HOH
HOH
1223
A
HOH
277
3
HOH
HOH
1224
A
HOH
278
3
HOH
HOH
1225
A
HOH
279
3
HOH
HOH
1226
A
HOH
280
3
HOH
HOH
1227
A
HOH
281
3
HOH
HOH
1228
A
HOH
282
3
HOH
HOH
1229
A
HOH
283
3
HOH
HOH
1230
A
HOH
284
3
HOH
HOH
1231
A
HOH
285
3
HOH
HOH
1232
A
HOH
286
3
HOH
HOH
1233
A
HOH
287
3
HOH
HOH
1234
A
HOH
288
3
HOH
HOH
1235
A
HOH
289
3
HOH
HOH
1236
A
HOH
290
3
HOH
HOH
1237
A
HOH
291
3
HOH
HOH
1238
A
HOH
292
3
HOH
HOH
1239
A
HOH
293
3
HOH
HOH
1240
A
HOH
294
3
HOH
HOH
1241
A
HOH
295
3
HOH
HOH
1242
A
HOH
296
3
HOH
HOH
1243
A
HOH
297
3
HOH
HOH
1244
A
HOH
298
3
HOH
HOH
1245
A
HOH
299
3
HOH
HOH
1246
A
HOH
300
3
HOH
HOH
1247
A
HOH
301
3
HOH
HOH
1248
A
HOH
302
3
HOH
HOH
1249
A
HOH
303
3
HOH
HOH
1250
A
HOH
304
3
HOH
HOH
1251
A
n
1
604
A
n
2
605
A
n
3
606
A
n
4
607
A
n
5
608
A
VAL
609
n
6
VAL
609
A
HIS
610
n
7
HIS
610
A
GLU
611
n
8
GLU
611
A
PHE
612
n
9
PHE
612
A
ALA
613
n
10
ALA
613
A
LYS
614
n
11
LYS
614
A
GLU
615
n
12
GLU
615
A
LEU
616
n
13
LEU
616
A
ASP
617
n
14
ASP
617
A
ALA
618
n
15
ALA
618
A
THR
619
n
16
THR
619
A
ASN
620
n
17
ASN
620
A
ILE
621
n
18
ILE
621
A
SER
622
n
19
SER
622
A
ILE
623
n
20
ILE
623
A
ASP
624
n
21
ASP
624
A
LYS
625
n
22
LYS
625
A
VAL
626
n
23
VAL
626
A
VAL
627
n
24
VAL
627
A
GLY
628
n
25
GLY
628
A
ALA
629
n
26
ALA
629
A
GLY
630
n
27
GLY
630
A
GLU
631
n
28
GLU
631
A
PHE
632
n
29
PHE
632
A
GLY
633
n
30
GLY
633
A
GLU
634
n
31
GLU
634
A
VAL
635
n
32
VAL
635
A
CYS
636
n
33
CYS
636
A
SER
637
n
34
SER
637
A
GLY
638
n
35
GLY
638
A
ARG
639
n
36
ARG
639
A
LEU
640
n
37
LEU
640
A
LYS
641
n
38
LYS
641
A
LEU
642
n
39
LEU
642
A
PRO
643
n
40
PRO
643
A
SER
644
n
41
SER
644
A
LYS
645
n
42
LYS
645
A
LYS
646
n
43
LYS
646
A
GLU
647
n
44
GLU
647
A
ILE
648
n
45
ILE
648
A
SER
649
n
46
SER
649
A
VAL
650
n
47
VAL
650
A
ALA
651
n
48
ALA
651
A
ILE
652
n
49
ILE
652
A
LYS
653
n
50
LYS
653
A
THR
654
n
51
THR
654
A
LEU
655
n
52
LEU
655
A
LYS
656
n
53
LYS
656
A
VAL
657
n
54
VAL
657
A
GLY
658
n
55
GLY
658
A
TYR
659
n
56
TYR
659
A
THR
660
n
57
THR
660
A
GLU
661
n
58
GLU
661
A
LYS
662
n
59
LYS
662
A
GLN
663
n
60
GLN
663
A
ARG
664
n
61
ARG
664
A
ARG
665
n
62
ARG
665
A
ASP
666
n
63
ASP
666
A
PHE
667
n
64
PHE
667
A
LEU
668
n
65
LEU
668
A
GLY
669
n
66
GLY
669
A
GLU
670
n
67
GLU
670
A
ALA
671
n
68
ALA
671
A
SER
672
n
69
SER
672
A
ILE
673
n
70
ILE
673
A
MET
674
n
71
MET
674
A
GLY
675
n
72
GLY
675
A
GLN
676
n
73
GLN
676
A
PHE
677
n
74
PHE
677
A
ASP
678
n
75
ASP
678
A
HIS
679
n
76
HIS
679
A
PRO
680
n
77
PRO
680
A
ASN
681
n
78
ASN
681
A
ILE
682
n
79
ILE
682
A
ILE
683
n
80
ILE
683
A
ARG
684
n
81
ARG
684
A
LEU
685
n
82
LEU
685
A
GLU
686
n
83
GLU
686
A
GLY
687
n
84
GLY
687
A
VAL
688
n
85
VAL
688
A
VAL
689
n
86
VAL
689
A
THR
690
n
87
THR
690
A
LYS
691
n
88
LYS
691
A
SER
692
n
89
SER
692
A
LYS
693
n
90
LYS
693
A
PRO
694
n
91
PRO
694
A
VAL
695
n
92
VAL
695
A
MET
696
n
93
MET
696
A
ILE
697
n
94
ILE
697
A
VAL
698
n
95
VAL
698
A
THR
699
n
96
THR
699
A
GLU
700
n
97
GLU
700
A
PTR
701
n
98
PTR
701
A
MET
702
n
99
MET
702
A
GLU
703
n
100
GLU
703
A
ASN
704
n
101
ASN
704
A
GLY
705
n
102
GLY
705
A
SER
706
n
103
SER
706
A
LEU
707
n
104
LEU
707
A
ASP
708
n
105
ASP
708
A
SER
709
n
106
SER
709
A
PHE
710
n
107
PHE
710
A
LEU
711
n
108
LEU
711
A
ARG
712
n
109
ARG
712
A
LYS
713
n
110
LYS
713
A
HIS
714
n
111
HIS
714
A
ASP
715
n
112
ASP
715
A
ALA
716
n
113
ALA
716
A
GLN
717
n
114
GLN
717
A
PHE
718
n
115
PHE
718
A
THR
719
n
116
THR
719
A
VAL
720
n
117
VAL
720
A
ILE
721
n
118
ILE
721
A
GLN
722
n
119
GLN
722
A
LEU
723
n
120
LEU
723
A
VAL
724
n
121
VAL
724
A
GLY
725
n
122
GLY
725
A
MET
726
n
123
MET
726
A
LEU
727
n
124
LEU
727
A
ARG
728
n
125
ARG
728
A
GLY
729
n
126
GLY
729
A
ILE
730
n
127
ILE
730
A
ALA
731
n
128
ALA
731
A
SER
732
n
129
SER
732
A
GLY
733
n
130
GLY
733
A
MET
734
n
131
MET
734
A
LYS
735
n
132
LYS
735
A
TYR
736
n
133
TYR
736
A
LEU
737
n
134
LEU
737
A
SER
738
n
135
SER
738
A
ASP
739
n
136
ASP
739
A
MET
740
n
137
MET
740
A
GLY
741
n
138
GLY
741
A
TYR
742
n
139
TYR
742
A
VAL
743
n
140
VAL
743
A
HIS
744
n
141
HIS
744
A
ARG
745
n
142
ARG
745
A
ASP
746
n
143
ASP
746
A
LEU
747
n
144
LEU
747
A
ALA
748
n
145
ALA
748
A
ALA
749
n
146
ALA
749
A
ARG
750
n
147
ARG
750
A
ASN
751
n
148
ASN
751
A
ILE
752
n
149
ILE
752
A
LEU
753
n
150
LEU
753
A
ILE
754
n
151
ILE
754
A
ASN
755
n
152
ASN
755
A
SER
756
n
153
SER
756
A
ASN
757
n
154
ASN
757
A
LEU
758
n
155
LEU
758
A
VAL
759
n
156
VAL
759
A
CYS
760
n
157
CYS
760
A
LYS
761
n
158
LYS
761
A
VAL
762
n
159
VAL
762
A
SER
763
n
160
SER
763
A
ASP
764
n
161
ASP
764
A
PHE
765
n
162
PHE
765
A
GLY
766
n
163
GLY
766
A
LEU
767
n
164
LEU
767
A
SER
768
n
165
SER
768
A
ARG
769
n
166
ARG
769
A
VAL
770
n
167
VAL
770
A
LEU
771
n
168
LEU
771
A
n
169
772
A
n
170
773
A
n
171
774
A
n
172
775
A
n
173
776
A
n
174
777
A
n
175
778
A
n
176
779
A
n
177
780
A
n
178
781
A
n
179
782
A
n
180
783
A
n
181
784
A
LYS
785
n
182
LYS
785
A
ILE
786
n
183
ILE
786
A
PRO
787
n
184
PRO
787
A
ILE
788
n
185
ILE
788
A
ARG
789
n
186
ARG
789
A
TRP
790
n
187
TRP
790
A
THR
791
n
188
THR
791
A
SER
792
n
189
SER
792
A
PRO
793
n
190
PRO
793
A
GLU
794
n
191
GLU
794
A
ALA
795
n
192
ALA
795
A
ILE
796
n
193
ILE
796
A
ALA
797
n
194
ALA
797
A
TYR
798
n
195
TYR
798
A
ARG
799
n
196
ARG
799
A
LYS
800
n
197
LYS
800
A
PHE
801
n
198
PHE
801
A
THR
802
n
199
THR
802
A
SER
803
n
200
SER
803
A
ALA
804
n
201
ALA
804
A
SER
805
n
202
SER
805
A
ASP
806
n
203
ASP
806
A
VAL
807
n
204
VAL
807
A
TRP
808
n
205
TRP
808
A
SER
809
n
206
SER
809
A
TYR
810
n
207
TYR
810
A
GLY
811
n
208
GLY
811
A
ILE
812
n
209
ILE
812
A
VAL
813
n
210
VAL
813
A
LEU
814
n
211
LEU
814
A
TRP
815
n
212
TRP
815
A
GLU
816
n
213
GLU
816
A
VAL
817
n
214
VAL
817
A
MET
818
n
215
MET
818
A
SER
819
n
216
SER
819
A
TYR
820
n
217
TYR
820
A
GLY
821
n
218
GLY
821
A
GLU
822
n
219
GLU
822
A
ARG
823
n
220
ARG
823
A
PRO
824
n
221
PRO
824
A
TYR
825
n
222
TYR
825
A
TRP
826
n
223
TRP
826
A
GLU
827
n
224
GLU
827
A
MET
828
n
225
MET
828
A
SER
829
n
226
SER
829
A
ASN
830
n
227
ASN
830
A
GLN
831
n
228
GLN
831
A
ASP
832
n
229
ASP
832
A
VAL
833
n
230
VAL
833
A
ILE
834
n
231
ILE
834
A
LYS
835
n
232
LYS
835
A
ALA
836
n
233
ALA
836
A
VAL
837
n
234
VAL
837
A
ASP
838
n
235
ASP
838
A
GLU
839
n
236
GLU
839
A
GLY
840
n
237
GLY
840
A
TYR
841
n
238
TYR
841
A
ARG
842
n
239
ARG
842
A
LEU
843
n
240
LEU
843
A
PRO
844
n
241
PRO
844
A
PRO
845
n
242
PRO
845
A
PRO
846
n
243
PRO
846
A
MET
847
n
244
MET
847
A
ASP
848
n
245
ASP
848
A
CYS
849
n
246
CYS
849
A
PRO
850
n
247
PRO
850
A
ALA
851
n
248
ALA
851
A
ALA
852
n
249
ALA
852
A
LEU
853
n
250
LEU
853
A
TYR
854
n
251
TYR
854
A
GLN
855
n
252
GLN
855
A
LEU
856
n
253
LEU
856
A
MET
857
n
254
MET
857
A
LEU
858
n
255
LEU
858
A
ASP
859
n
256
ASP
859
A
CYS
860
n
257
CYS
860
A
TRP
861
n
258
TRP
861
A
GLN
862
n
259
GLN
862
A
LYS
863
n
260
LYS
863
A
ASP
864
n
261
ASP
864
A
ARG
865
n
262
ARG
865
A
ASN
866
n
263
ASN
866
A
ASN
867
n
264
ASN
867
A
ARG
868
n
265
ARG
868
A
PRO
869
n
266
PRO
869
A
LYS
870
n
267
LYS
870
A
PHE
871
n
268
PHE
871
A
GLU
872
n
269
GLU
872
A
GLN
873
n
270
GLN
873
A
ILE
874
n
271
ILE
874
A
VAL
875
n
272
VAL
875
A
SER
876
n
273
SER
876
A
ILE
877
n
274
ILE
877
A
LEU
878
n
275
LEU
878
A
ASP
879
n
276
ASP
879
A
LYS
880
n
277
LYS
880
A
LEU
881
n
278
LEU
881
A
ILE
882
n
279
ILE
882
A
ARG
883
n
280
ARG
883
A
ASN
884
n
281
ASN
884
A
PRO
885
n
282
PRO
885
A
GLY
886
n
283
GLY
886
A
SER
887
n
284
SER
887
A
LEU
888
n
285
LEU
888
A
LYS
889
n
286
LYS
889
A
ILE
890
n
287
ILE
890
A
ILE
891
n
288
ILE
891
A
THR
892
n
289
THR
892
A
n
290
893
A
n
291
894
A
n
292
895
A
n
293
896
A
ARG
897
n
294
ARG
897
A
PRO
898
n
295
PRO
898
A
SER
899
n
296
SER
899
A
ASN
900
n
297
ASN
900
A
LEU
901
n
298
LEU
901
A
LEU
902
n
299
LEU
902
A
LEU
903
n
300
LEU
903
A
ASP
904
n
301
ASP
904
A
GLN
905
n
302
GLN
905
A
SER
906
n
303
SER
906
A
n
304
907
A
n
305
908
A
n
306
909
A
n
307
910
A
n
308
911
A
n
309
912
A
n
310
913
A
n
311
914
A
n
312
915
A
n
313
916
A
n
314
917
A
n
315
918
A
n
316
919
A
n
317
920
A
n
318
921
A
n
319
922
A
n
320
923
A
n
321
924
A
n
322
925
A
n
323
926
A
n
324
927
A
n
325
928
A
n
326
929
A
n
327
930
A
n
328
931
A
n
329
932
A
n
330
933
A
n
331
934
A
n
332
935
A
n
333
936
A
n
334
937
A
n
335
938
A
n
336
939
A
n
337
940
A
n
338
941
A
n
339
942
A
n
340
943
A
n
341
944
A
n
342
945
A
n
343
946
A
n
344
947
A
author_and_software_defined_assembly
PISA
1
monomeric
A
PTR
701
O-PHOSPHOTYROSINE
A
PTR
98
TYR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
628
A
N
GLY
25
A
O
VAL
635
A
O
VAL
32
A
N
CYS
636
A
N
CYS
33
A
O
ILE
652
A
O
ILE
49
A
N
LYS
653
A
N
LYS
50
A
O
ILE
697
A
O
ILE
94
A
O
VAL
698
A
O
VAL
95
A
N
GLY
687
A
N
GLY
84
A
N
VAL
743
A
N
VAL
140
A
O
ARG
769
A
O
ARG
166
A
N
LEU
753
A
N
LEU
150
A
O
LYS
761
A
O
LYS
158
A
N
ARG
842
A
N
ARG
239
A
O
LEU
902
A
O
LEU
299
1
A
GLY
604
A
GLY
1
1
Y
1
A
SER
605
A
SER
2
1
Y
1
A
THR
606
A
THR
3
1
Y
1
A
GLN
607
A
GLN
4
1
Y
1
A
THR
608
A
THR
5
1
Y
1
A
GLU
772
A
GLU
169
1
Y
1
A
ASP
773
A
ASP
170
1
Y
1
A
ASP
774
A
ASP
171
1
Y
1
A
PRO
775
A
PRO
172
1
Y
1
A
GLU
776
A
GLU
173
1
Y
1
A
ALA
777
A
ALA
174
1
Y
1
A
ALA
778
A
ALA
175
1
Y
1
A
TYR
779
A
TYR
176
1
Y
1
A
THR
780
A
THR
177
1
Y
1
A
THR
781
A
THR
178
1
Y
1
A
ARG
782
A
ARG
179
1
Y
1
A
GLY
783
A
GLY
180
1
Y
1
A
GLY
784
A
GLY
181
1
Y
1
A
SER
893
A
SER
290
1
Y
1
A
ALA
894
A
ALA
291
1
Y
1
A
ALA
895
A
ALA
292
1
Y
1
A
ALA
896
A
ALA
293
1
Y
1
A
ASN
907
A
ASN
304
1
Y
1
A
VAL
908
A
VAL
305
1
Y
1
A
ASP
909
A
ASP
306
1
Y
1
A
ILE
910
A
ILE
307
1
Y
1
A
THR
911
A
THR
308
1
Y
1
A
THR
912
A
THR
309
1
Y
1
A
PHE
913
A
PHE
310
1
Y
1
A
ARG
914
A
ARG
311
1
Y
1
A
THR
915
A
THR
312
1
Y
1
A
THR
916
A
THR
313
1
Y
1
A
GLY
917
A
GLY
314
1
Y
1
A
ASP
918
A
ASP
315
1
Y
1
A
TRP
919
A
TRP
316
1
Y
1
A
LEU
920
A
LEU
317
1
Y
1
A
ASN
921
A
ASN
318
1
Y
1
A
GLY
922
A
GLY
319
1
Y
1
A
VAL
923
A
VAL
320
1
Y
1
A
TRP
924
A
TRP
321
1
Y
1
A
THR
925
A
THR
322
1
Y
1
A
ALA
926
A
ALA
323
1
Y
1
A
HIS
927
A
HIS
324
1
Y
1
A
CYS
928
A
CYS
325
1
Y
1
A
LYS
929
A
LYS
326
1
Y
1
A
GLU
930
A
GLU
327
1
Y
1
A
ILE
931
A
ILE
328
1
Y
1
A
PHE
932
A
PHE
329
1
Y
1
A
THR
933
A
THR
330
1
Y
1
A
GLY
934
A
GLY
331
1
Y
1
A
VAL
935
A
VAL
332
1
Y
1
A
GLU
936
A
GLU
333
1
Y
1
A
TYR
937
A
TYR
334
1
Y
1
A
SER
938
A
SER
335
1
Y
1
A
SER
939
A
SER
336
1
Y
1
A
CYS
940
A
CYS
337
1
Y
1
A
ASP
941
A
ASP
338
1
Y
1
A
THR
942
A
THR
339
1
Y
1
A
ILE
943
A
ILE
340
1
Y
1
A
ALA
944
A
ALA
341
1
Y
1
A
LYS
945
A
LYS
342
1
Y
1
A
ILE
946
A
ILE
343
1
Y
1
A
SER
947
A
SER
344
1
Y
1
A
A
SG
S2
CYS
BME
636
1
0.34
1
A
A
O
O
HOH
HOH
1172
1175
1.56
1
A
A
O
O
HOH
HOH
1185
1187
1.58
1
A
A
O
O
HOH
HOH
1122
1167
1.73
1
A
A
O
O
HOH
HOH
1171
1176
1.84
1
A
A
O
O
HOH
HOH
1162
1168
2.02
1
A
A
O
O
HOH
HOH
1173
1175
2.09
1
A
A
SG
C2
CYS
BME
636
1
2.14
1
A
A
O
O
HOH
HOH
1171
1182
1.59
1_555
2_647
1
A
A
O
O
HOH
HOH
952
1181
1.74
1_555
1_545
1
A
LYS
645
84.45
-8.79
1
A
ARG
745
A
72.91
-7.69
1
A
ARG
745
B
74.15
-7.16
1
A
ASP
746
-141.74
40.37
1
A
ASP
764
58.85
83.97
1
A
ASP
764
61.44
83.97
1
A
TYR
798
-150.72
31.33
1
A
TYR
798
-150.72
30.65
1
A
TRP
826
50.23
-130.43
16.354
0.000
0.000
0.000
0.000
0.000
0.000
0.964
0.953
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.196
0.169
0.170
1.650
26.490
1801
35314
5.100
96.640
1.483
0.053
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.099
0.095
0.800
0.800
1.200
PDB entry 2GSF
MAXIMUM LIKELIHOOD WITH PHASES
MASK
1.650
26.490
304
2695
4
0
2387
0.008
0.022
2456
0.001
0.020
1749
1.134
1.974
3338
0.838
3.000
4260
5.144
5.000
316
30.383
23.028
109
11.640
15.000
461
14.398
15.000
23
0.071
0.200
363
0.004
0.020
2754
0.002
0.020
516
0.213
0.200
559
0.180
0.200
1948
0.172
0.200
1279
0.080
0.200
1230
0.229
0.200
203
0.172
0.200
19
0.231
0.200
59
0.294
0.200
29
0.890
1.500
1966
0.148
1.500
598
1.010
2.000
2442
1.641
3.000
1133
2.380
4.500
890
0.259
0.279
1.693
94
1853
1947
20
73.530
1.65
26.490
2QOB
35314
0.031
1
48.8
6.8
95.8
0.134
1.65
1.70
12.5
6.4
64.5
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
phasing
R. J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
other
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
data extraction
PDB
sw-help@rcsb.rutgers.edu
July 2, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.000
data collection
SBC-Collect
data reduction
HKL-2000
data scaling
HKL-2000
Human EphA3 kinase domain, base structure
1
N
N
2
N
N
3
N
N
A
ASP
617
A
ASP
14
HELX_P
A
THR
619
A
THR
16
5
1
3
A
THR
660
A
THR
57
HELX_P
A
GLY
675
A
GLY
72
1
2
16
A
SER
706
A
SER
103
HELX_P
A
LYS
713
A
LYS
110
1
3
8
A
THR
719
A
THR
116
HELX_P
A
MET
740
A
MET
137
1
4
22
A
ALA
748
A
ALA
145
HELX_P
A
ARG
750
A
ARG
147
5
5
3
A
PRO
787
A
PRO
184
HELX_P
A
THR
791
A
THR
188
5
6
5
A
SER
792
A
SER
189
HELX_P
A
ARG
799
A
ARG
196
1
7
8
A
THR
802
A
THR
199
HELX_P
A
SER
819
A
SER
216
1
8
18
A
SER
829
A
SER
226
HELX_P
A
GLY
840
A
GLY
237
1
9
12
A
PRO
850
A
PRO
247
HELX_P
A
TRP
861
A
TRP
258
1
10
12
A
ASP
864
A
ASP
261
HELX_P
A
ARG
868
A
ARG
265
5
11
5
A
LYS
870
A
LYS
267
HELX_P
A
ASN
884
A
ASN
281
1
12
15
A
PRO
885
A
PRO
282
HELX_P
A
ILE
890
A
ILE
287
5
13
6
covale
1.780
none
A
BME
1
B
S2
BME
1_555
A
CYS
636
A
CB
CYS
33
1_555
covale
1.328
both
A
GLU
700
A
C
GLU
97
1_555
A
PTR
701
A
N
PTR
98
1_555
covale
1.328
both
A
PTR
701
A
C
PTR
98
1_555
A
MET
702
A
N
MET
99
1_555
TRANSFERASE
receptor tyrosine kinase, structural genomics, Structural Genomics Consortium, SGC, ATP-binding, Membrane, Nucleotide-binding, Phosphorylation, Transferase, Transmembrane, Tyrosine-protein kinase
A
LYS
693
A
LYS
90
1
A
PRO
694
A
PRO
91
2.51
Q6P4R6_HUMAN
UNP
1
606
Q6P4R6
TQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRL
EGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDF
GLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPP
PMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLLDQSNVDITTFRTTGDWLNGVWT
AHCKEIFTGVEYSSCDTIAKIS
606
947
2QOB
606
947
Q6P4R6
A
1
3
344
1
expression tag
GLY
604
2QOB
A
Q6P4R6
UNP
1
1
expression tag
SER
605
2QOB
A
Q6P4R6
UNP
2
5
2
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
621
A
ILE
18
A
ALA
629
A
ALA
26
A
GLU
634
A
GLU
31
A
LYS
641
A
LYS
38
A
GLU
647
A
GLU
44
A
THR
654
A
THR
51
A
MET
696
A
MET
93
A
GLU
700
A
GLU
97
A
LEU
685
A
LEU
82
A
VAL
689
A
VAL
86
A
TYR
742
A
TYR
139
A
VAL
743
A
VAL
140
A
ARG
769
A
ARG
166
A
VAL
770
A
VAL
167
A
ILE
752
A
ILE
149
A
ILE
754
A
ILE
151
A
CYS
760
A
CYS
157
A
VAL
762
A
VAL
159
A
TYR
841
A
TYR
238
A
ARG
842
A
ARG
239
A
LEU
902
A
LEU
299
A
LEU
903
A
LEU
300
BINDING SITE FOR RESIDUE BME A 1
A
BME
1
Software
6
A
ILE
623
A
ILE
20
6
1_555
A
VAL
635
A
VAL
32
6
1_555
A
CYS
636
A
CYS
33
6
1_555
A
ILE
652
A
ILE
49
6
1_555
A
THR
654
A
THR
51
6
1_555
A
ILE
890
A
ILE
287
6
1_455
4
P 1 21 1