0.027426
0.000000
0.000000
0.000000
0.019533
0.000000
0.000000
0.000000
0.014107
0.00000
0.00000
0.00000
Lunin, V.V.
Wu, H.
Dombrovski, L.
Antoshenko, T.
Loppnau, P.
Weigelt, J.
Sundstrom, M.
Arrowsmith, C.H.
Edwards, A.M.
Bochkarev, A.
Min, J.
Plotnikov, A.N.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
36.462
51.196
70.887
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Plos One
1932-6203
5
e8570
e8570
10.1371/journal.pone.0008570
20084102
Structural biology of human H3K9 methyltransferases
2010
10.2210/pdb2qpw/pdb
pdb_00002qpw
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2007-06-24
ADSC QUANTUM 210
SINGLE WAVELENGTH
M
x-ray
1
0.97770
1.0
A1
CHESS
0.97770
SYNCHROTRON
CHESS BEAMLINE A1
17047.355
PR domain zinc finger protein 2
Methyltransferase domain: Residues 2-148
1
man
polymer
18.015
water
145
nat
water
PR domain-containing protein 2, Retinoblastoma protein-interacting zinc finger protein, Zinc finger protein RIZ, MTE-binding protein, MTB-ZF, GATA-3-binding protein G3B
no
no
GSNQNTTEPVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQVKNNVYMWEVY
YPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGEDNPEI
GSNQNTTEPVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQVKNNVYMWEVY
YPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGEDNPEI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
PRDM2, RIZ
9606
Homo sapiens
562
Escherichia coli
DH5a
Plasmid
p15MHL
2
1.94
36.62
VAPOR DIFFUSION, HANGING DROP
7.0
22% PEG 5000 MME, 0.2 M Ammonium sulfate, 0.1 M MES pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
Structural Genomics Consortium
SGC
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Data collection
Database references
Refinement description
1
0
2007-08-14
1
1
2011-07-13
1
2
2024-02-21
1
3
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
Y
RCSB
Y
RCSB
2007-07-25
REL
REL
HOH
water
Obtained via Se-SAD from second crystal (different crystal form) at low resolution
Other
experimental model
HOH
2
2
HOH
HOH
148
A
HOH
3
2
HOH
HOH
149
A
HOH
4
2
HOH
HOH
150
A
HOH
5
2
HOH
HOH
151
A
HOH
7
2
HOH
HOH
152
A
HOH
9
2
HOH
HOH
153
A
HOH
10
2
HOH
HOH
154
A
HOH
11
2
HOH
HOH
155
A
HOH
12
2
HOH
HOH
156
A
HOH
13
2
HOH
HOH
157
A
HOH
14
2
HOH
HOH
158
A
HOH
15
2
HOH
HOH
159
A
HOH
17
2
HOH
HOH
160
A
HOH
18
2
HOH
HOH
161
A
HOH
19
2
HOH
HOH
162
A
HOH
20
2
HOH
HOH
163
A
HOH
21
2
HOH
HOH
164
A
HOH
22
2
HOH
HOH
165
A
HOH
23
2
HOH
HOH
166
A
HOH
24
2
HOH
HOH
167
A
HOH
25
2
HOH
HOH
168
A
HOH
26
2
HOH
HOH
169
A
HOH
27
2
HOH
HOH
170
A
HOH
28
2
HOH
HOH
171
A
HOH
30
2
HOH
HOH
172
A
HOH
31
2
HOH
HOH
173
A
HOH
32
2
HOH
HOH
174
A
HOH
33
2
HOH
HOH
175
A
HOH
35
2
HOH
HOH
176
A
HOH
36
2
HOH
HOH
177
A
HOH
37
2
HOH
HOH
178
A
HOH
38
2
HOH
HOH
179
A
HOH
39
2
HOH
HOH
180
A
HOH
40
2
HOH
HOH
181
A
HOH
41
2
HOH
HOH
182
A
HOH
42
2
HOH
HOH
183
A
HOH
43
2
HOH
HOH
184
A
HOH
44
2
HOH
HOH
185
A
HOH
45
2
HOH
HOH
186
A
HOH
46
2
HOH
HOH
187
A
HOH
47
2
HOH
HOH
188
A
HOH
49
2
HOH
HOH
189
A
HOH
52
2
HOH
HOH
190
A
HOH
53
2
HOH
HOH
191
A
HOH
54
2
HOH
HOH
192
A
HOH
55
2
HOH
HOH
193
A
HOH
56
2
HOH
HOH
194
A
HOH
57
2
HOH
HOH
195
A
HOH
58
2
HOH
HOH
196
A
HOH
60
2
HOH
HOH
197
A
HOH
61
2
HOH
HOH
198
A
HOH
62
2
HOH
HOH
199
A
HOH
63
2
HOH
HOH
200
A
HOH
64
2
HOH
HOH
201
A
HOH
65
2
HOH
HOH
202
A
HOH
66
2
HOH
HOH
203
A
HOH
67
2
HOH
HOH
204
A
HOH
68
2
HOH
HOH
205
A
HOH
69
2
HOH
HOH
206
A
HOH
70
2
HOH
HOH
207
A
HOH
71
2
HOH
HOH
208
A
HOH
72
2
HOH
HOH
209
A
HOH
73
2
HOH
HOH
210
A
HOH
74
2
HOH
HOH
211
A
HOH
75
2
HOH
HOH
212
A
HOH
76
2
HOH
HOH
213
A
HOH
77
2
HOH
HOH
214
A
HOH
79
2
HOH
HOH
215
A
HOH
80
2
HOH
HOH
216
A
HOH
81
2
HOH
HOH
217
A
HOH
82
2
HOH
HOH
218
A
HOH
83
2
HOH
HOH
219
A
HOH
86
2
HOH
HOH
220
A
HOH
88
2
HOH
HOH
221
A
HOH
89
2
HOH
HOH
222
A
HOH
90
2
HOH
HOH
223
A
HOH
91
2
HOH
HOH
224
A
HOH
92
2
HOH
HOH
225
A
HOH
93
2
HOH
HOH
226
A
HOH
95
2
HOH
HOH
227
A
HOH
98
2
HOH
HOH
228
A
HOH
99
2
HOH
HOH
229
A
HOH
100
2
HOH
HOH
230
A
HOH
101
2
HOH
HOH
231
A
HOH
102
2
HOH
HOH
232
A
HOH
103
2
HOH
HOH
233
A
HOH
104
2
HOH
HOH
234
A
HOH
105
2
HOH
HOH
235
A
HOH
106
2
HOH
HOH
236
A
HOH
108
2
HOH
HOH
237
A
HOH
109
2
HOH
HOH
238
A
HOH
112
2
HOH
HOH
239
A
HOH
114
2
HOH
HOH
240
A
HOH
115
2
HOH
HOH
241
A
HOH
116
2
HOH
HOH
242
A
HOH
117
2
HOH
HOH
243
A
HOH
119
2
HOH
HOH
244
A
HOH
121
2
HOH
HOH
245
A
HOH
123
2
HOH
HOH
246
A
HOH
124
2
HOH
HOH
247
A
HOH
125
2
HOH
HOH
248
A
HOH
126
2
HOH
HOH
249
A
HOH
127
2
HOH
HOH
250
A
HOH
128
2
HOH
HOH
251
A
HOH
129
2
HOH
HOH
252
A
HOH
130
2
HOH
HOH
253
A
HOH
132
2
HOH
HOH
254
A
HOH
133
2
HOH
HOH
255
A
HOH
134
2
HOH
HOH
256
A
HOH
135
2
HOH
HOH
257
A
HOH
136
2
HOH
HOH
258
A
HOH
137
2
HOH
HOH
259
A
HOH
138
2
HOH
HOH
260
A
HOH
139
2
HOH
HOH
261
A
HOH
140
2
HOH
HOH
262
A
HOH
141
2
HOH
HOH
263
A
HOH
142
2
HOH
HOH
264
A
HOH
143
2
HOH
HOH
265
A
HOH
144
2
HOH
HOH
266
A
HOH
146
2
HOH
HOH
267
A
HOH
147
2
HOH
HOH
268
A
HOH
148
2
HOH
HOH
269
A
HOH
149
2
HOH
HOH
270
A
HOH
150
2
HOH
HOH
271
A
HOH
151
2
HOH
HOH
272
A
HOH
152
2
HOH
HOH
273
A
HOH
153
2
HOH
HOH
274
A
HOH
154
2
HOH
HOH
275
A
HOH
155
2
HOH
HOH
276
A
HOH
156
2
HOH
HOH
277
A
HOH
158
2
HOH
HOH
278
A
HOH
159
2
HOH
HOH
279
A
HOH
160
2
HOH
HOH
280
A
HOH
161
2
HOH
HOH
281
A
HOH
166
2
HOH
HOH
282
A
HOH
167
2
HOH
HOH
283
A
HOH
168
2
HOH
HOH
284
A
HOH
169
2
HOH
HOH
285
A
HOH
170
2
HOH
HOH
286
A
HOH
171
2
HOH
HOH
287
A
HOH
172
2
HOH
HOH
288
A
HOH
173
2
HOH
HOH
289
A
HOH
174
2
HOH
HOH
290
A
HOH
175
2
HOH
HOH
291
A
HOH
176
2
HOH
HOH
292
A
n
1
-1
A
n
2
0
A
ASN
1
n
3
ASN
1
A
GLN
2
n
4
GLN
2
A
ASN
3
n
5
ASN
3
A
THR
4
n
6
THR
4
A
THR
5
n
7
THR
5
A
GLU
6
n
8
GLU
6
A
PRO
7
n
9
PRO
7
A
VAL
8
n
10
VAL
8
A
ALA
9
n
11
ALA
9
A
ALA
10
n
12
ALA
10
A
THR
11
n
13
THR
11
A
GLU
12
n
14
GLU
12
A
THR
13
n
15
THR
13
A
LEU
14
n
16
LEU
14
A
ALA
15
n
17
ALA
15
A
GLU
16
n
18
GLU
16
A
VAL
17
n
19
VAL
17
A
PRO
18
n
20
PRO
18
A
GLU
19
n
21
GLU
19
A
HIS
20
n
22
HIS
20
A
VAL
21
n
23
VAL
21
A
LEU
22
n
24
LEU
22
A
ARG
23
n
25
ARG
23
A
GLY
24
n
26
GLY
24
A
LEU
25
n
27
LEU
25
A
PRO
26
n
28
PRO
26
A
GLU
27
n
29
GLU
27
A
GLU
28
n
30
GLU
28
A
VAL
29
n
31
VAL
29
A
ARG
30
n
32
ARG
30
A
LEU
31
n
33
LEU
31
A
PHE
32
n
34
PHE
32
A
PRO
33
n
35
PRO
33
A
SER
34
n
36
SER
34
A
ALA
35
n
37
ALA
35
A
VAL
36
n
38
VAL
36
A
ASP
37
n
39
ASP
37
A
LYS
38
n
40
LYS
38
A
THR
39
n
41
THR
39
A
ARG
40
n
42
ARG
40
A
ILE
41
n
43
ILE
41
A
GLY
42
n
44
GLY
42
A
VAL
43
n
45
VAL
43
A
TRP
44
n
46
TRP
44
A
ALA
45
n
47
ALA
45
A
THR
46
n
48
THR
46
A
LYS
47
n
49
LYS
47
A
PRO
48
n
50
PRO
48
A
ILE
49
n
51
ILE
49
A
LEU
50
n
52
LEU
50
A
LYS
51
n
53
LYS
51
A
GLY
52
n
54
GLY
52
A
LYS
53
n
55
LYS
53
A
LYS
54
n
56
LYS
54
A
PHE
55
n
57
PHE
55
A
GLY
56
n
58
GLY
56
A
PRO
57
n
59
PRO
57
A
PHE
58
n
60
PHE
58
A
VAL
59
n
61
VAL
59
A
GLY
60
n
62
GLY
60
A
ASP
61
n
63
ASP
61
A
LYS
62
n
64
LYS
62
A
LYS
63
n
65
LYS
63
A
LYS
64
n
66
LYS
64
A
ARG
65
n
67
ARG
65
A
SER
66
n
68
SER
66
A
GLN
67
n
69
GLN
67
A
VAL
68
n
70
VAL
68
A
LYS
69
n
71
LYS
69
A
ASN
70
n
72
ASN
70
A
ASN
71
n
73
ASN
71
A
VAL
72
n
74
VAL
72
A
TYR
73
n
75
TYR
73
A
MET
74
n
76
MET
74
A
TRP
75
n
77
TRP
75
A
GLU
76
n
78
GLU
76
A
VAL
77
n
79
VAL
77
A
TYR
78
n
80
TYR
78
A
TYR
79
n
81
TYR
79
A
PRO
80
n
82
PRO
80
A
ASN
81
n
83
ASN
81
A
LEU
82
n
84
LEU
82
A
GLY
83
n
85
GLY
83
A
TRP
84
n
86
TRP
84
A
MET
85
n
87
MET
85
A
CYS
86
n
88
CYS
86
A
ILE
87
n
89
ILE
87
A
ASP
88
n
90
ASP
88
A
ALA
89
n
91
ALA
89
A
THR
90
n
92
THR
90
A
ASP
91
n
93
ASP
91
A
PRO
92
n
94
PRO
92
A
GLU
93
n
95
GLU
93
A
LYS
94
n
96
LYS
94
A
GLY
95
n
97
GLY
95
A
ASN
96
n
98
ASN
96
A
TRP
97
n
99
TRP
97
A
LEU
98
n
100
LEU
98
A
ARG
99
n
101
ARG
99
A
TYR
100
n
102
TYR
100
A
VAL
101
n
103
VAL
101
A
ASN
102
n
104
ASN
102
A
TRP
103
n
105
TRP
103
A
ALA
104
n
106
ALA
104
A
CYS
105
n
107
CYS
105
A
SER
106
n
108
SER
106
A
GLY
107
n
109
GLY
107
A
GLU
108
n
110
GLU
108
A
GLU
109
n
111
GLU
109
A
GLN
110
n
112
GLN
110
A
ASN
111
n
113
ASN
111
A
LEU
112
n
114
LEU
112
A
PHE
113
n
115
PHE
113
A
PRO
114
n
116
PRO
114
A
LEU
115
n
117
LEU
115
A
GLU
116
n
118
GLU
116
A
ILE
117
n
119
ILE
117
A
ASN
118
n
120
ASN
118
A
ARG
119
n
121
ARG
119
A
ALA
120
n
122
ALA
120
A
ILE
121
n
123
ILE
121
A
TYR
122
n
124
TYR
122
A
TYR
123
n
125
TYR
123
A
LYS
124
n
126
LYS
124
A
THR
125
n
127
THR
125
A
LEU
126
n
128
LEU
126
A
LYS
127
n
129
LYS
127
A
PRO
128
n
130
PRO
128
A
ILE
129
n
131
ILE
129
A
ALA
130
n
132
ALA
130
A
PRO
131
n
133
PRO
131
A
GLY
132
n
134
GLY
132
A
GLU
133
n
135
GLU
133
A
GLU
134
n
136
GLU
134
A
LEU
135
n
137
LEU
135
A
LEU
136
n
138
LEU
136
A
VAL
137
n
139
VAL
137
A
TRP
138
n
140
TRP
138
A
TYR
139
n
141
TYR
139
A
ASN
140
n
142
ASN
140
A
GLY
141
n
143
GLY
141
A
GLU
142
n
144
GLU
142
A
ASP
143
n
145
ASP
143
A
ASN
144
n
146
ASN
144
A
PRO
145
n
147
PRO
145
A
GLU
146
n
148
GLU
146
A
ILE
147
n
149
ILE
147
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
30
A
N
ARG
32
A
O
TRP
44
A
O
TRP
46
A
N
PHE
55
A
N
PHE
57
A
O
TYR
123
A
O
TYR
125
A
O
LYS
124
A
O
LYS
126
A
N
PHE
113
A
N
PHE
115
A
N
LYS
63
A
N
LYS
65
A
O
CYS
86
A
O
CYS
88
A
O
ILE
87
A
O
ILE
89
A
N
TRP
75
A
N
TRP
77
A
N
ASN
102
A
N
ASN
104
A
O
VAL
137
A
O
VAL
139
1
A
CG
GLU
108
A
CG
GLU
110
1
Y
1
A
CD
GLU
108
A
CD
GLU
110
1
Y
1
A
OE1
GLU
108
A
OE1
GLU
110
1
Y
1
A
OE2
GLU
108
A
OE2
GLU
110
1
Y
1
A
CG
GLU
109
A
CG
GLU
111
1
Y
1
A
CD
GLU
109
A
CD
GLU
111
1
Y
1
A
OE1
GLU
109
A
OE1
GLU
111
1
Y
1
A
OE2
GLU
109
A
OE2
GLU
111
1
Y
1
A
CG
ASP
143
A
CG
ASP
145
1
Y
1
A
OD1
ASP
143
A
OD1
ASP
145
1
Y
1
A
OD2
ASP
143
A
OD2
ASP
145
1
Y
1
A
GLY
-1
A
GLY
1
1
Y
1
A
SER
0
A
SER
2
1
Y
1
A
A
O
O
HOH
HOH
177
268
2.11
1
A
A
OE2
O
GLU
HOH
93
239
2.17
1
A
A
OE1
O
GLN
HOH
67
266
2.18
23.169
-0.81
0.00
0.00
-0.44
0.00
1.26
0.965
0.940
The Friedel pairs were used for phasing. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.22157
0.16842
0.17104
0.17104
1.79
41.49
631
12305
12305
4.9
99.41
2.718
0.087
RANDOM
1
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
0.135
0.133
0.80
0.80
1.40
Obtained via Se-SAD from second crystal (different crystal form) at low resolution
MAXIMUM LIKELIHOOD
MASK
1.79
41.49
145
1336
0
0
1191
0.019
0.022
1228
1.507
1.957
1679
5.947
5.000
150
36.888
24.643
56
14.279
15.000
202
8.909
15.000
6
0.118
0.200
178
0.007
0.020
952
0.206
0.200
414
0.307
0.200
802
0.212
0.200
78
0.177
0.200
58
0.191
0.200
21
1.198
1.500
772
1.815
2.000
1208
2.835
3.000
551
4.245
4.500
469
0.254
0.198
1.84
56
841
20
94.82
1.79
50.0
2QPW
23999
23999
0
0
0.063
1
34.3
7.2
99.7
1.79
1.86
6
2407
0.301
6.4
99.3
refinement
REFMAC
5.2.0019
data collection
ADSC
Quantum
data reduction
HKL-2000
data scaling
HKL-2000
phasing
MOLREP
N
Methyltransferase domain of human PR domain-containing protein 2
1
N
N
2
N
N
A
THR
13
A
THR
15
HELX_P
A
VAL
17
A
VAL
19
5
1
5
A
PRO
18
A
PRO
20
HELX_P
A
GLY
24
A
GLY
26
1
2
7
A
LYS
64
A
LYS
66
HELX_P
A
VAL
68
A
VAL
70
5
3
5
A
ASP
91
A
ASP
93
HELX_P
A
GLY
95
A
GLY
97
5
4
5
A
ASN
96
A
ASN
98
HELX_P
A
VAL
101
A
VAL
103
5
5
6
TRANSCRIPTION
methyltransferase, Activator, Alternative initiation, Alternative splicing, DNA-binding, Metal-binding, Nucleus, Phosphorylation, Transcription, Transcription regulation, Zinc, Zinc-finger, Structural Genomics, Structural Genomics Consortium, SGC
A
GLY
56
A
GLY
58
1
A
PRO
57
A
PRO
59
7.56
PRDM2_HUMAN
UNP
1
2
Q13029
NQNTTEPVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQVKNNVYMWEVYYP
NLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGEDNPEI
2
148
2QPW
1
147
Q13029
A
1
3
149
1
expression tag
GLY
-1
2QPW
A
Q13029
UNP
1
1
expression tag
SER
0
2QPW
A
Q13029
UNP
2
2
3
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
VAL
29
A
VAL
31
A
PRO
33
A
PRO
35
A
ILE
41
A
ILE
43
A
ALA
45
A
ALA
47
A
LYS
54
A
LYS
56
A
PHE
55
A
PHE
57
A
ALA
120
A
ALA
122
A
THR
125
A
THR
127
A
LEU
112
A
LEU
114
A
ILE
117
A
ILE
119
A
ASP
61
A
ASP
63
A
LYS
63
A
LYS
65
A
GLY
83
A
GLY
85
A
ASP
88
A
ASP
90
A
MET
74
A
MET
76
A
TYR
79
A
TYR
81
A
ASN
102
A
ASN
104
A
TRP
103
A
TRP
105
A
LEU
136
A
LEU
138
A
VAL
137
A
VAL
139
19
P 21 21 21