0.015330
0.008851
0.000000
0.000000
0.017702
0.000000
0.000000
0.000000
0.020227
0.000000
0.000000
0.000000
Brown, E.N.
Ramaswamy, S.
Karlsson, A.
Friemann, R.
Parales, J.V.
Parales, R.
Gibson, D.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
65.230
65.230
49.440
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
Fe2 S2
175.820
FE2/S2 (INORGANIC) CLUSTER
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
FE
N
89
N
FE
N
90
N
S
N
91
N
S
N
92
N
N
N
93
S
C
N
94
N
C
N
95
N
O
N
96
N
C
N
97
N
C
N
98
N
C
N
99
N
O
N
100
N
N
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
S
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
C
N
118
N
C
N
119
N
O
N
120
N
O
N
121
N
O
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
N
N
132
N
C
N
133
N
C
N
134
N
O
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
Y
146
N
C
Y
147
N
N
Y
148
N
C
Y
149
N
C
Y
150
N
N
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
N
N
166
S
C
N
167
N
C
N
168
N
O
N
169
S
C
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
N
N
188
S
C
N
189
N
C
N
190
N
O
N
191
N
C
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
N
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
N
N
235
S
C
N
236
N
C
N
237
N
O
N
238
N
C
N
239
N
C
N
240
N
S
N
241
N
C
N
242
N
O
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
Y
262
N
C
Y
263
N
C
Y
264
N
C
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
O
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
R
C
N
313
N
O
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
N
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
N
363
N
O
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
N
C
N
381
N
C
N
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
Y
144
N
sing
Y
145
N
doub
Y
146
N
doub
N
147
N
sing
Y
148
N
sing
N
149
N
sing
Y
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
Y
252
N
doub
Y
253
N
sing
Y
254
N
sing
N
255
N
sing
Y
256
N
doub
N
257
N
sing
Y
258
N
doub
N
259
N
sing
Y
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
GW
J.Biol.Inorg.Chem.
JJBCFA
2154
0949-8257
13
1301
1313
10.1007/s00775-008-0413-4
18719951
Determining Rieske cluster reduction potentials.
2008
10.2210/pdb2qpz/pdb
pdb_00002qpz
100
1
CCD
ADSC QUANTUM 210
SINGLE WAVELENGTH
M
x-ray
1
0.934000
1.0
ID14-2
ESRF
0.934000
SYNCHROTRON
ESRF BEAMLINE ID14-2
11325.910
Naphthalene 1,2-dioxygenase system ferredoxin subunit
1
man
polymer
175.820
FE2/S2 (INORGANIC) CLUSTER
1
syn
non-polymer
18.015
water
98
nat
water
no
no
TVKWIEAVALSDILEGDVLGVTVEGKELALYEVEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCA
PVTQNIKTYPVKIENLRVMIDLS
TVKWIEAVALSDILEGDVLGVTVEGKELALYEVEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCA
PVTQNIKTYPVKIENLRVMIDLS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
NCIB 9816
sample
ndoA, nahAB, ndoC1
303
Pseudomonas putida
562
Escherichia coli
plasmid
pDTG141
1
2.68
54.12
VAPOR DIFFUSION, SITTING DROP
7.0
36-38% PEG8000, 100 mM MES, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 282K
282
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2008-09-02
1
1
2011-07-13
1
2
2023-08-30
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Naphthalene 1,2-dixoygenase
RCSB
Y
RCSB
2007-07-25
REL
REL
FES
FE2/S2 (INORGANIC) CLUSTER
HOH
water
1FQT
PDB
experimental model
FES
201
2
FES
FES
201
A
HOH
1
3
HOH
HOH
202
A
HOH
2
3
HOH
HOH
203
A
HOH
3
3
HOH
HOH
204
A
HOH
4
3
HOH
HOH
205
A
HOH
5
3
HOH
HOH
206
A
HOH
6
3
HOH
HOH
207
A
HOH
7
3
HOH
HOH
208
A
HOH
8
3
HOH
HOH
209
A
HOH
9
3
HOH
HOH
210
A
HOH
10
3
HOH
HOH
211
A
HOH
11
3
HOH
HOH
212
A
HOH
12
3
HOH
HOH
213
A
HOH
13
3
HOH
HOH
214
A
HOH
14
3
HOH
HOH
215
A
HOH
15
3
HOH
HOH
216
A
HOH
16
3
HOH
HOH
217
A
HOH
17
3
HOH
HOH
218
A
HOH
18
3
HOH
HOH
219
A
HOH
19
3
HOH
HOH
220
A
HOH
20
3
HOH
HOH
221
A
HOH
21
3
HOH
HOH
222
A
HOH
22
3
HOH
HOH
223
A
HOH
23
3
HOH
HOH
224
A
HOH
24
3
HOH
HOH
225
A
HOH
25
3
HOH
HOH
226
A
HOH
26
3
HOH
HOH
227
A
HOH
27
3
HOH
HOH
228
A
HOH
28
3
HOH
HOH
229
A
HOH
29
3
HOH
HOH
230
A
HOH
30
3
HOH
HOH
231
A
HOH
31
3
HOH
HOH
232
A
HOH
32
3
HOH
HOH
233
A
HOH
33
3
HOH
HOH
234
A
HOH
34
3
HOH
HOH
235
A
HOH
35
3
HOH
HOH
236
A
HOH
36
3
HOH
HOH
237
A
HOH
37
3
HOH
HOH
238
A
HOH
38
3
HOH
HOH
239
A
HOH
39
3
HOH
HOH
240
A
HOH
40
3
HOH
HOH
241
A
HOH
41
3
HOH
HOH
242
A
HOH
42
3
HOH
HOH
243
A
HOH
43
3
HOH
HOH
244
A
HOH
44
3
HOH
HOH
245
A
HOH
45
3
HOH
HOH
246
A
HOH
46
3
HOH
HOH
247
A
HOH
47
3
HOH
HOH
248
A
HOH
48
3
HOH
HOH
249
A
HOH
50
3
HOH
HOH
250
A
HOH
51
3
HOH
HOH
251
A
HOH
52
3
HOH
HOH
252
A
HOH
53
3
HOH
HOH
253
A
HOH
54
3
HOH
HOH
254
A
HOH
55
3
HOH
HOH
255
A
HOH
56
3
HOH
HOH
256
A
HOH
57
3
HOH
HOH
257
A
HOH
59
3
HOH
HOH
258
A
HOH
60
3
HOH
HOH
259
A
HOH
61
3
HOH
HOH
260
A
HOH
62
3
HOH
HOH
261
A
HOH
63
3
HOH
HOH
262
A
HOH
64
3
HOH
HOH
263
A
HOH
65
3
HOH
HOH
264
A
HOH
66
3
HOH
HOH
265
A
HOH
67
3
HOH
HOH
266
A
HOH
68
3
HOH
HOH
267
A
HOH
69
3
HOH
HOH
268
A
HOH
70
3
HOH
HOH
269
A
HOH
71
3
HOH
HOH
270
A
HOH
72
3
HOH
HOH
271
A
HOH
73
3
HOH
HOH
272
A
HOH
74
3
HOH
HOH
273
A
HOH
77
3
HOH
HOH
274
A
HOH
78
3
HOH
HOH
275
A
HOH
79
3
HOH
HOH
276
A
HOH
80
3
HOH
HOH
277
A
HOH
81
3
HOH
HOH
278
A
HOH
82
3
HOH
HOH
279
A
HOH
84
3
HOH
HOH
280
A
HOH
85
3
HOH
HOH
281
A
HOH
86
3
HOH
HOH
282
A
HOH
87
3
HOH
HOH
283
A
HOH
88
3
HOH
HOH
284
A
HOH
89
3
HOH
HOH
285
A
HOH
90
3
HOH
HOH
286
A
HOH
93
3
HOH
HOH
287
A
HOH
94
3
HOH
HOH
288
A
HOH
95
3
HOH
HOH
289
A
HOH
96
3
HOH
HOH
290
A
HOH
97
3
HOH
HOH
291
A
HOH
98
3
HOH
HOH
292
A
HOH
99
3
HOH
HOH
293
A
HOH
100
3
HOH
HOH
294
A
HOH
101
3
HOH
HOH
295
A
HOH
102
3
HOH
HOH
296
A
HOH
103
3
HOH
HOH
297
A
HOH
106
3
HOH
HOH
298
A
HOH
107
3
HOH
HOH
299
A
THR
1
n
1
THR
1
A
VAL
2
n
2
VAL
2
A
LYS
3
n
3
LYS
3
A
TRP
4
n
4
TRP
4
A
ILE
5
n
5
ILE
5
A
GLU
6
n
6
GLU
6
A
ALA
7
n
7
ALA
7
A
VAL
8
n
8
VAL
8
A
ALA
9
n
9
ALA
9
A
LEU
10
n
10
LEU
10
A
SER
11
n
11
SER
11
A
ASP
12
n
12
ASP
12
A
ILE
13
n
13
ILE
13
A
LEU
14
n
14
LEU
14
A
GLU
15
n
15
GLU
15
A
GLY
16
n
16
GLY
16
A
ASP
17
n
17
ASP
17
A
VAL
18
n
18
VAL
18
A
LEU
19
n
19
LEU
19
A
GLY
20
n
20
GLY
20
A
VAL
21
n
21
VAL
21
A
THR
22
n
22
THR
22
A
VAL
23
n
23
VAL
23
A
GLU
24
n
24
GLU
24
A
GLY
25
n
25
GLY
25
A
LYS
26
n
26
LYS
26
A
GLU
27
n
27
GLU
27
A
LEU
28
n
28
LEU
28
A
ALA
29
n
29
ALA
29
A
LEU
30
n
30
LEU
30
A
TYR
31
n
31
TYR
31
A
GLU
32
n
32
GLU
32
A
VAL
33
n
33
VAL
33
A
GLU
34
n
34
GLU
34
A
GLY
35
n
35
GLY
35
A
GLU
36
n
36
GLU
36
A
ILE
37
n
37
ILE
37
A
TYR
38
n
38
TYR
38
A
ALA
39
n
39
ALA
39
A
THR
40
n
40
THR
40
A
ASP
41
n
41
ASP
41
A
ASN
42
n
42
ASN
42
A
LEU
43
n
43
LEU
43
A
CYS
44
n
44
CYS
44
A
THR
45
n
45
THR
45
A
HIS
46
n
46
HIS
46
A
GLY
47
n
47
GLY
47
A
SER
48
n
48
SER
48
A
ALA
49
n
49
ALA
49
A
ARG
50
n
50
ARG
50
A
MET
51
n
51
MET
51
A
SER
52
n
52
SER
52
A
ASP
53
n
53
ASP
53
A
GLY
54
n
54
GLY
54
A
TYR
55
n
55
TYR
55
A
LEU
56
n
56
LEU
56
A
GLU
57
n
57
GLU
57
A
GLY
58
n
58
GLY
58
A
ARG
59
n
59
ARG
59
A
GLU
60
n
60
GLU
60
A
ILE
61
n
61
ILE
61
A
GLU
62
n
62
GLU
62
A
CYS
63
n
63
CYS
63
A
PRO
64
n
64
PRO
64
A
LEU
65
n
65
LEU
65
A
HIS
66
n
66
HIS
66
A
GLN
67
n
67
GLN
67
A
GLY
68
n
68
GLY
68
A
ARG
69
n
69
ARG
69
A
PHE
70
n
70
PHE
70
A
ASP
71
n
71
ASP
71
A
VAL
72
n
72
VAL
72
A
CYS
73
n
73
CYS
73
A
THR
74
n
74
THR
74
A
GLY
75
n
75
GLY
75
A
LYS
76
n
76
LYS
76
A
ALA
77
n
77
ALA
77
A
LEU
78
n
78
LEU
78
A
CYS
79
n
79
CYS
79
A
ALA
80
n
80
ALA
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
THR
83
n
83
THR
83
A
GLN
84
n
84
GLN
84
A
ASN
85
n
85
ASN
85
A
ILE
86
n
86
ILE
86
A
LYS
87
n
87
LYS
87
A
THR
88
n
88
THR
88
A
TYR
89
n
89
TYR
89
A
PRO
90
n
90
PRO
90
A
VAL
91
n
91
VAL
91
A
LYS
92
n
92
LYS
92
A
ILE
93
n
93
ILE
93
A
GLU
94
n
94
GLU
94
A
ASN
95
n
95
ASN
95
A
LEU
96
n
96
LEU
96
A
ARG
97
n
97
ARG
97
A
VAL
98
n
98
VAL
98
A
MET
99
n
99
MET
99
A
ILE
100
n
100
ILE
100
A
ASP
101
n
101
ASP
101
A
LEU
102
n
102
LEU
102
A
SER
103
n
103
SER
103
A
author_defined_assembly
1
monomeric
A
CYS
44
A
SG
CYS
44
1_555
A
FES
201
B
FE1
FES
1_555
A
FES
201
B
S1
FES
1_555
110.2
A
CYS
44
A
SG
CYS
44
1_555
A
FES
201
B
FE1
FES
1_555
A
FES
201
B
S2
FES
1_555
111.0
A
FES
201
B
S1
FES
1_555
A
FES
201
B
FE1
FES
1_555
A
FES
201
B
S2
FES
1_555
102.9
A
CYS
44
A
SG
CYS
44
1_555
A
FES
201
B
FE1
FES
1_555
A
CYS
63
A
SG
CYS
63
1_555
107.7
A
FES
201
B
S1
FES
1_555
A
FES
201
B
FE1
FES
1_555
A
CYS
63
A
SG
CYS
63
1_555
114.5
A
FES
201
B
S2
FES
1_555
A
FES
201
B
FE1
FES
1_555
A
CYS
63
A
SG
CYS
63
1_555
110.5
A
HIS
46
A
ND1
HIS
46
1_555
A
FES
201
B
FE2
FES
1_555
A
FES
201
B
S1
FES
1_555
111.4
A
HIS
46
A
ND1
HIS
46
1_555
A
FES
201
B
FE2
FES
1_555
A
FES
201
B
S2
FES
1_555
115.2
A
FES
201
B
S1
FES
1_555
A
FES
201
B
FE2
FES
1_555
A
FES
201
B
S2
FES
1_555
104.2
A
HIS
46
A
ND1
HIS
46
1_555
A
FES
201
B
FE2
FES
1_555
A
HIS
66
A
ND1
HIS
66
1_555
99.2
A
FES
201
B
S1
FES
1_555
A
FES
201
B
FE2
FES
1_555
A
HIS
66
A
ND1
HIS
66
1_555
120.1
A
FES
201
B
S2
FES
1_555
A
FES
201
B
FE2
FES
1_555
A
HIS
66
A
ND1
HIS
66
1_555
107.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
7
A
N
ALA
7
A
O
VAL
98
A
O
VAL
98
A
O
MET
99
A
O
MET
99
A
N
LYS
92
A
N
LYS
92
A
N
VAL
23
A
N
VAL
23
A
O
LYS
26
A
O
LYS
26
A
N
ALA
29
A
N
ALA
29
A
O
THR
40
A
O
THR
40
A
N
ALA
39
A
N
ALA
39
A
O
TYR
89
A
O
TYR
89
A
N
GLU
57
A
N
GLU
57
A
O
GLU
60
A
O
GLU
60
A
N
ILE
61
A
N
ILE
61
A
O
PHE
70
A
O
PHE
70
A
N
ARG
69
A
N
ARG
69
A
O
LEU
78
A
O
LEU
78
1
A
A
O
O
HOH
HOH
221
294
1.53
1
A
A
O
O
HOH
HOH
231
296
1.56
1
A
A
O
O
SER
HOH
103
299
1.68
1
A
A
O
O
HOH
HOH
259
284
2.16
1
A
A
O
O
HOH
HOH
213
287
2.19
1
-14.51
1.60
100.20
85.69
A
A
A
CG
SD
CE
MET
MET
MET
51
51
51
N
1
A
A
O
O
HOH
HOH
282
295
2.06
1_555
5_554
1
A
ALA
7
-109.67
-78.54
1
A
ASN
95
83.84
-112.96
1
A
LEU
96
120.84
-78.83
24.734
1.290
0.650
0.000
1.290
0.000
-1.940
0.968
0.957
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.197
0.154
0.157
1.850
28.25
493
10268
4.800
99.480
5.687
0.079
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.228
0.114
0.800
0.800
1.200
1FQT
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.850
28.25
98
920
4
0
818
0.025
0.022
837
0.011
0.020
560
2.372
1.983
1133
1.309
3.003
1373
6.552
5.000
106
37.779
24.444
36
17.528
15.000
151
19.843
15.000
6
0.150
0.200
134
0.010
0.020
924
0.010
0.020
159
0.249
0.200
175
0.265
0.200
649
0.182
0.200
400
0.094
0.200
495
0.338
0.200
68
0.099
0.200
5
0.204
0.200
16
0.265
0.200
16
3.132
1.500
660
1.453
1.500
215
3.764
2.000
849
4.986
3.000
353
6.619
4.500
282
3.342
3.000
1665
10.523
3.000
98
7.483
3.000
1382
0.200
0.167
1.898
31
679
710
20
93.790
1.850
58.50
2QPZ
10291
0.063
0.063
1
8.000
14.200
99.600
0.249
1.85
1.95
2.9
11116
1446
0.249
7.70
97.50
0.172
1.95
2.07
4.2
15036
1407
0.172
10.70
100.00
0.114
2.07
2.21
6.3
14929
1346
0.114
11.10
100.00
0.096
2.21
2.39
6.9
14920
1233
0.096
12.10
100.00
0.085
2.39
2.62
7.7
16229
1162
0.085
14.00
100.00
0.080
2.62
2.93
8.0
17890
1034
0.080
17.30
100.00
0.072
2.93
3.38
8.9
20003
914
0.072
21.90
100.00
0.052
3.38
4.14
12.1
17204
789
0.052
21.80
100.00
0.048
4.14
5.85
13.0
13002
610
0.048
21.30
100.00
0.058
5.85
56.80
10.7
6029
350
0.058
17.20
99.80
data reduction
A.G.W. Leslie
andrew@mrc-lmb.cam.ac.uk
http://www.mrc-lmb.cam.ac.uk/harry/mosflm/
MOSFLM
package
data scaling
Phil Evans
pre@mrc-lmb.cam.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/INDEX.html
SCALA
other
phasing
Jorge Navaza
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
AMoRE
program
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
5.2.0019
data extraction
PDB
sw-help@rcsb.rutgers.edu
July 2, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.000
N
Naphthalene 1,2-dioxygenase Rieske ferredoxin
1
N
N
2
N
N
3
N
N
A
ARG
50
A
ARG
50
HELX_P
A
GLY
54
A
GLY
54
5
1
5
metalc
2.356
A
CYS
44
A
SG
CYS
44
1_555
A
FES
201
B
FE1
FES
1_555
metalc
2.133
A
HIS
46
A
ND1
HIS
46
1_555
A
FES
201
B
FE2
FES
1_555
metalc
2.270
A
CYS
63
A
SG
CYS
63
1_555
A
FES
201
B
FE1
FES
1_555
metalc
2.022
A
HIS
66
A
ND1
HIS
66
1_555
A
FES
201
B
FE2
FES
1_555
METAL BINDING PROTEIN
Rieske ferredoxin, 2Fe-2S, Aromatic hydrocarbons catabolism, Electron transport, Iron, Iron-sulfur, Metal-binding, Plasmid, Transport, METAL BINDING PROTEIN
A
ALA
80
A
ALA
80
1
A
PRO
81
A
PRO
81
0.52
A
ASN
95
A
ASN
95
1
A
LEU
96
A
LEU
96
-5.67
NDOA_PSEPU
UNP
1
2
P0A185
TVKWIEAVALSDILEGDVLGVTVEGKELALYEVEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCA
PVTQNIKTYPVKIENLRVMIDLS
2
104
2QPZ
1
103
P0A185
A
1
1
103
3
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TRP
4
A
TRP
4
A
ALA
9
A
ALA
9
A
ARG
97
A
ARG
97
A
ASP
101
A
ASP
101
A
VAL
91
A
VAL
91
A
GLU
94
A
GLU
94
A
VAL
18
A
VAL
18
A
VAL
23
A
VAL
23
A
LYS
26
A
LYS
26
A
VAL
33
A
VAL
33
A
GLU
36
A
GLU
36
A
ASP
41
A
ASP
41
A
THR
88
A
THR
88
A
TYR
89
A
TYR
89
A
TYR
55
A
TYR
55
A
GLU
57
A
GLU
57
A
GLU
60
A
GLU
60
A
GLU
62
A
GLU
62
A
ARG
69
A
ARG
69
A
ASP
71
A
ASP
71
A
ALA
77
A
ALA
77
A
CYS
79
A
CYS
79
BINDING SITE FOR RESIDUE FES A 201
A
FES
201
Software
7
A
CYS
44
A
CYS
44
7
1_555
A
HIS
46
A
HIS
46
7
1_555
A
GLY
47
A
GLY
47
7
1_555
A
CYS
63
A
CYS
63
7
1_555
A
LEU
65
A
LEU
65
7
1_555
A
HIS
66
A
HIS
66
7
1_555
A
PRO
81
A
PRO
81
7
1_555
169
P 61