0.009439
0.005450
0.000000
0.000000
0.010900
0.000000
0.000000
0.000000
0.014903
0.00000
0.00000
0.00000
Marmorstein, R.
Sanders, B.D.
Zhao, K.
Slama, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
105.940
105.940
67.100
C15 H24 N6 O12 P2
542.332
5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C8 H16 N2 O3
188.224
n
N(6)-ACETYLLYSINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
Y
1
N
N
Y
2
N
C
Y
3
N
N
Y
4
N
C
Y
5
N
C
Y
6
N
C
N
7
N
N
Y
8
N
N
Y
9
N
C
Y
10
N
N
N
11
R
C
N
12
R
C
N
13
N
O
N
14
S
C
N
15
N
O
N
16
N
O
N
17
R
C
N
18
N
C
N
19
N
O
N
20
S
P
N
21
N
O
N
22
N
O
N
23
N
O
N
24
S
P
N
25
N
O
N
26
N
O
N
27
N
O
N
28
N
C
N
29
N
N
N
30
N
C
N
31
N
O
N
32
S
C
N
33
N
O
N
34
R
C
N
35
R
C
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
N
N
61
S
C
N
62
N
C
N
63
N
O
N
64
N
C
N
65
N
O
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
C
N
75
N
C
N
76
N
N
N
77
N
C
N
78
N
C
N
79
N
C
N
80
N
C
N
81
S
C
N
82
N
N
N
83
N
C
N
84
N
O
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
N
N
103
S
C
N
104
N
C
N
105
N
O
N
106
N
C
N
107
N
C
N
108
N
C
N
109
N
N
N
110
N
C
N
111
N
N
N
112
N
N
N
113
N
O
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
S
C
N
131
N
C
N
132
N
O
N
133
N
C
N
134
N
C
N
135
N
O
N
136
N
N
N
137
N
O
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
S
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
O
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
R
C
N
164
N
C
N
165
N
O
N
166
N
C
N
167
N
S
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
S
C
N
178
N
C
N
179
N
O
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
N
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
N
N
197
S
C
N
198
N
C
N
199
N
O
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
O
N
204
N
O
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
N
C
Y
230
N
C
Y
231
N
N
Y
232
N
C
Y
233
N
C
Y
234
N
N
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
N
N
250
S
C
N
251
N
C
N
252
N
O
N
253
S
C
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
N
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
N
323
N
C
N
324
N
S
N
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
N
C
N
366
N
C
N
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
N
383
N
O
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
R
C
N
397
N
O
N
398
N
C
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
N
N
410
S
C
N
411
N
C
N
412
N
O
N
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
N
Y
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
N
N
437
S
C
N
438
N
C
N
439
N
O
N
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
N
447
N
O
N
448
N
O
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
N
N
461
S
C
N
462
N
C
N
463
N
O
N
464
N
C
N
465
N
C
N
466
N
C
N
467
N
O
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
ZN
Y
1
N
doub
Y
2
N
sing
Y
3
N
sing
N
4
N
sing
Y
5
N
doub
Y
6
N
sing
Y
7
N
sing
Y
8
N
doub
Y
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
Y
13
N
doub
Y
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
doub
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
doub
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
Y
230
N
sing
Y
231
N
doub
Y
232
N
doub
N
233
N
sing
Y
234
N
sing
N
235
N
sing
Y
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
doub
N
343
N
sing
Y
344
N
doub
N
345
N
sing
Y
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
Y
407
N
doub
Y
408
N
sing
Y
409
N
sing
N
410
N
sing
Y
411
N
doub
Y
412
N
sing
Y
413
N
sing
N
414
N
sing
Y
415
N
sing
Y
416
N
doub
N
417
N
sing
Y
418
N
doub
N
419
N
sing
Y
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
Y
435
N
doub
Y
436
N
sing
Y
437
N
sing
N
438
N
sing
Y
439
N
doub
N
440
N
sing
Y
441
N
doub
N
442
N
sing
Y
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
doub
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
US
Mol.Cell
MOCEFL
2168
1097-2765
25
463
472
10.1016/j.molcel.2006.12.022
17289592
Structural basis for nicotinamide inhibition and base exchange in sir2 enzymes.
2007
10.2210/pdb2qqf/pdb
pdb_00002qqf
93
1
CCD
2005-07-15
ADSC QUANTUM 210
SI(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9777
1.0
A1
CHESS
0.9777
SYNCHROTRON
CHESS BEAMLINE A1
34794.828
NAD-dependent deacetylase HST2
3.5.1.-
1
man
polymer
1310.615
Histone H4
SEQUENCE DATABASE RESIDUES 13-23
1
syn
polymer
65.409
ZINC ION
1
syn
non-polymer
542.332
5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE
1
syn
non-polymer
18.015
water
136
nat
water
Homologous to SIR2 protein 2
no
no
MRGSHHHHHHGMASMSVSTASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAV
FDVDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC
GKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSL
AVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQEDFEKILTAQ
MRGSHHHHHHGMASMSVSTASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAV
FDVDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC
GKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSL
AVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQEDFEKILTAQ
A
polypeptide(L)
no
yes
KGGA(ALY)RHRKIL
KGGAKRHRKIL
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
Escherichia
sample
HST2
4932
Saccharomyces cerevisiae
562
Escherichia coli
BL21 gold
plasmid
pRSET-A
1
3.15
60.90
VAPOR DIFFUSION, HANGING DROP
5.6
2.0 M Ammonium Sulfate, 100 mM Na citrate and 200 mM K/Na tartrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_conn_type
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
Data collection
1
0
2007-10-09
1
1
2011-07-13
1
2
2017-10-25
1
3
2023-08-30
1
4
2023-11-15
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
updated coordinates
RCSB
Y
RCSB
2007-07-26
REL
REL
ZN
ZINC ION
A1R
5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE
HOH
water
The H4 peptide was chemically synthesized using standard solid phase synthesis chemistry. The peptide is naturally found in Saccharomyces cerevisiae.
sample
1SZD
PDB
experimental model
ZN
701
3
ZN
ZN
701
A
A1R
1001
4
A1R
A1R
1001
A
HOH
1002
5
HOH
HOH
1002
A
HOH
1003
5
HOH
HOH
1003
A
HOH
1004
5
HOH
HOH
1004
A
HOH
1005
5
HOH
HOH
1005
A
HOH
1006
5
HOH
HOH
1006
A
HOH
1007
5
HOH
HOH
1007
A
HOH
1008
5
HOH
HOH
1008
A
HOH
1009
5
HOH
HOH
1009
A
HOH
1010
5
HOH
HOH
1010
A
HOH
1011
5
HOH
HOH
1011
A
HOH
1012
5
HOH
HOH
1012
A
HOH
1013
5
HOH
HOH
1013
A
HOH
1014
5
HOH
HOH
1014
A
HOH
1015
5
HOH
HOH
1015
A
HOH
1016
5
HOH
HOH
1016
A
HOH
1017
5
HOH
HOH
1017
A
HOH
1018
5
HOH
HOH
1018
A
HOH
1019
5
HOH
HOH
1019
A
HOH
1020
5
HOH
HOH
1020
A
HOH
1021
5
HOH
HOH
1021
A
HOH
1022
5
HOH
HOH
1022
A
HOH
1023
5
HOH
HOH
1023
A
HOH
1024
5
HOH
HOH
1024
A
HOH
1025
5
HOH
HOH
1025
A
HOH
1026
5
HOH
HOH
1026
A
HOH
1027
5
HOH
HOH
1027
A
HOH
1028
5
HOH
HOH
1028
A
HOH
1029
5
HOH
HOH
1029
A
HOH
1030
5
HOH
HOH
1030
A
HOH
1031
5
HOH
HOH
1031
A
HOH
1032
5
HOH
HOH
1032
A
HOH
1033
5
HOH
HOH
1033
A
HOH
1034
5
HOH
HOH
1034
A
HOH
1035
5
HOH
HOH
1035
A
HOH
1036
5
HOH
HOH
1036
A
HOH
1037
5
HOH
HOH
1037
A
HOH
1038
5
HOH
HOH
1038
A
HOH
1039
5
HOH
HOH
1039
A
HOH
1040
5
HOH
HOH
1040
A
HOH
1041
5
HOH
HOH
1041
A
HOH
1042
5
HOH
HOH
1042
A
HOH
1043
5
HOH
HOH
1043
A
HOH
1044
5
HOH
HOH
1044
A
HOH
1045
5
HOH
HOH
1045
A
HOH
1046
5
HOH
HOH
1046
A
HOH
1047
5
HOH
HOH
1047
A
HOH
1048
5
HOH
HOH
1048
A
HOH
1049
5
HOH
HOH
1049
A
HOH
1050
5
HOH
HOH
1050
A
HOH
1051
5
HOH
HOH
1051
A
HOH
1052
5
HOH
HOH
1052
A
HOH
1053
5
HOH
HOH
1053
A
HOH
1054
5
HOH
HOH
1054
A
HOH
1055
5
HOH
HOH
1055
A
HOH
1056
5
HOH
HOH
1056
A
HOH
1057
5
HOH
HOH
1057
A
HOH
1058
5
HOH
HOH
1058
A
HOH
1059
5
HOH
HOH
1059
A
HOH
1060
5
HOH
HOH
1060
A
HOH
1061
5
HOH
HOH
1061
A
HOH
1062
5
HOH
HOH
1062
A
HOH
1063
5
HOH
HOH
1063
A
HOH
1064
5
HOH
HOH
1064
A
HOH
1065
5
HOH
HOH
1065
A
HOH
1066
5
HOH
HOH
1066
A
HOH
1067
5
HOH
HOH
1067
A
HOH
1068
5
HOH
HOH
1068
A
HOH
1069
5
HOH
HOH
1069
A
HOH
1070
5
HOH
HOH
1070
A
HOH
1071
5
HOH
HOH
1071
A
HOH
1072
5
HOH
HOH
1072
A
HOH
1073
5
HOH
HOH
1073
A
HOH
1074
5
HOH
HOH
1074
A
HOH
1075
5
HOH
HOH
1075
A
HOH
1076
5
HOH
HOH
1076
A
HOH
1077
5
HOH
HOH
1077
A
HOH
1078
5
HOH
HOH
1078
A
HOH
1079
5
HOH
HOH
1079
A
HOH
1080
5
HOH
HOH
1080
A
HOH
1081
5
HOH
HOH
1081
A
HOH
1082
5
HOH
HOH
1082
A
HOH
1083
5
HOH
HOH
1083
A
HOH
1084
5
HOH
HOH
1084
A
HOH
1085
5
HOH
HOH
1085
A
HOH
1086
5
HOH
HOH
1086
A
HOH
1087
5
HOH
HOH
1087
A
HOH
1088
5
HOH
HOH
1088
A
HOH
1089
5
HOH
HOH
1089
A
HOH
1090
5
HOH
HOH
1090
A
HOH
1091
5
HOH
HOH
1091
A
HOH
1092
5
HOH
HOH
1092
A
HOH
1093
5
HOH
HOH
1093
A
HOH
1094
5
HOH
HOH
1094
A
HOH
1095
5
HOH
HOH
1095
A
HOH
1096
5
HOH
HOH
1096
A
HOH
1097
5
HOH
HOH
1097
A
HOH
1098
5
HOH
HOH
1098
A
HOH
1099
5
HOH
HOH
1099
A
HOH
1100
5
HOH
HOH
1100
A
HOH
1101
5
HOH
HOH
1101
A
HOH
1102
5
HOH
HOH
1102
A
HOH
1103
5
HOH
HOH
1103
A
HOH
1104
5
HOH
HOH
1104
A
HOH
1105
5
HOH
HOH
1105
A
HOH
1106
5
HOH
HOH
1106
A
HOH
1107
5
HOH
HOH
1107
A
HOH
1108
5
HOH
HOH
1108
A
HOH
1109
5
HOH
HOH
1109
A
HOH
1110
5
HOH
HOH
1110
A
HOH
1111
5
HOH
HOH
1111
A
HOH
1112
5
HOH
HOH
1112
A
HOH
1113
5
HOH
HOH
1113
A
HOH
1114
5
HOH
HOH
1114
A
HOH
1115
5
HOH
HOH
1115
A
HOH
1116
5
HOH
HOH
1116
A
HOH
1117
5
HOH
HOH
1117
A
HOH
1118
5
HOH
HOH
1118
A
HOH
1119
5
HOH
HOH
1119
A
HOH
1120
5
HOH
HOH
1120
A
HOH
1121
5
HOH
HOH
1121
A
HOH
1122
5
HOH
HOH
1122
A
HOH
1123
5
HOH
HOH
1123
A
HOH
1124
5
HOH
HOH
1124
A
HOH
1125
5
HOH
HOH
1125
A
HOH
1126
5
HOH
HOH
1126
A
HOH
1127
5
HOH
HOH
1127
A
HOH
1128
5
HOH
HOH
1128
A
HOH
1129
5
HOH
HOH
1129
A
HOH
1130
5
HOH
HOH
1130
A
HOH
1131
5
HOH
HOH
1131
A
HOH
1132
5
HOH
HOH
1132
A
HOH
1133
5
HOH
HOH
1133
A
HOH
49
5
HOH
HOH
49
B
HOH
134
5
HOH
HOH
50
B
HOH
135
5
HOH
HOH
51
B
HOH
137
5
HOH
HOH
52
B
n
1
-13
A
n
2
-12
A
n
3
-11
A
n
4
-10
A
n
5
-9
A
n
6
-8
A
n
7
-7
A
n
8
-6
A
n
9
-5
A
n
10
-4
A
n
11
-3
A
MET
-2
n
12
MET
-2
A
ALA
-1
n
13
ALA
-1
A
SER
0
n
14
SER
0
A
MET
1
n
15
MET
1
A
SER
2
n
16
SER
2
A
VAL
3
n
17
VAL
3
A
SER
4
n
18
SER
4
A
THR
5
n
19
THR
5
A
ALA
6
n
20
ALA
6
A
SER
7
n
21
SER
7
A
THR
8
n
22
THR
8
A
GLU
9
n
23
GLU
9
A
MET
10
n
24
MET
10
A
SER
11
n
25
SER
11
A
VAL
12
n
26
VAL
12
A
ARG
13
n
27
ARG
13
A
LYS
14
n
28
LYS
14
A
ILE
15
n
29
ILE
15
A
ALA
16
n
30
ALA
16
A
ALA
17
n
31
ALA
17
A
HIS
18
n
32
HIS
18
A
MET
19
n
33
MET
19
A
LYS
20
n
34
LYS
20
A
SER
21
n
35
SER
21
A
ASN
22
n
36
ASN
22
A
PRO
23
n
37
PRO
23
A
ASN
24
n
38
ASN
24
A
ALA
25
n
39
ALA
25
A
LYS
26
n
40
LYS
26
A
VAL
27
n
41
VAL
27
A
ILE
28
n
42
ILE
28
A
PHE
29
n
43
PHE
29
A
MET
30
n
44
MET
30
A
VAL
31
n
45
VAL
31
A
GLY
32
n
46
GLY
32
A
ALA
33
n
47
ALA
33
A
GLY
34
n
48
GLY
34
A
ILE
35
n
49
ILE
35
A
SER
36
n
50
SER
36
A
THR
37
n
51
THR
37
A
SER
38
n
52
SER
38
A
CYS
39
n
53
CYS
39
A
GLY
40
n
54
GLY
40
A
ILE
41
n
55
ILE
41
A
PRO
42
n
56
PRO
42
A
ASP
43
n
57
ASP
43
A
PHE
44
n
58
PHE
44
A
ARG
45
n
59
ARG
45
A
SER
46
n
60
SER
46
A
PRO
47
n
61
PRO
47
A
GLY
48
n
62
GLY
48
A
THR
49
n
63
THR
49
A
GLY
50
n
64
GLY
50
A
LEU
51
n
65
LEU
51
A
TYR
52
n
66
TYR
52
A
HIS
53
n
67
HIS
53
A
ASN
54
n
68
ASN
54
A
LEU
55
n
69
LEU
55
A
ALA
56
n
70
ALA
56
A
ARG
57
n
71
ARG
57
A
LEU
58
n
72
LEU
58
A
LYS
59
n
73
LYS
59
A
LEU
60
n
74
LEU
60
A
PRO
61
n
75
PRO
61
A
TYR
62
n
76
TYR
62
A
PRO
63
n
77
PRO
63
A
GLU
64
n
78
GLU
64
A
ALA
65
n
79
ALA
65
A
VAL
66
n
80
VAL
66
A
PHE
67
n
81
PHE
67
A
ASP
68
n
82
ASP
68
A
VAL
69
n
83
VAL
69
A
ASP
70
n
84
ASP
70
A
PHE
71
n
85
PHE
71
A
PHE
72
n
86
PHE
72
A
GLN
73
n
87
GLN
73
A
SER
74
n
88
SER
74
A
ASP
75
n
89
ASP
75
A
PRO
76
n
90
PRO
76
A
LEU
77
n
91
LEU
77
A
PRO
78
n
92
PRO
78
A
PHE
79
n
93
PHE
79
A
TYR
80
n
94
TYR
80
A
THR
81
n
95
THR
81
A
LEU
82
n
96
LEU
82
A
ALA
83
n
97
ALA
83
A
LYS
84
n
98
LYS
84
A
GLU
85
n
99
GLU
85
A
LEU
86
n
100
LEU
86
A
TYR
87
n
101
TYR
87
A
PRO
88
n
102
PRO
88
A
GLY
89
n
103
GLY
89
A
ASN
90
n
104
ASN
90
A
PHE
91
n
105
PHE
91
A
ARG
92
n
106
ARG
92
A
PRO
93
n
107
PRO
93
A
SER
94
n
108
SER
94
A
LYS
95
n
109
LYS
95
A
PHE
96
n
110
PHE
96
A
HIS
97
n
111
HIS
97
A
TYR
98
n
112
TYR
98
A
LEU
99
n
113
LEU
99
A
LEU
100
n
114
LEU
100
A
LYS
101
n
115
LYS
101
A
LEU
102
n
116
LEU
102
A
PHE
103
n
117
PHE
103
A
GLN
104
n
118
GLN
104
A
ASP
105
n
119
ASP
105
A
LYS
106
n
120
LYS
106
A
ASP
107
n
121
ASP
107
A
VAL
108
n
122
VAL
108
A
LEU
109
n
123
LEU
109
A
LYS
110
n
124
LYS
110
A
ARG
111
n
125
ARG
111
A
VAL
112
n
126
VAL
112
A
TYR
113
n
127
TYR
113
A
THR
114
n
128
THR
114
A
GLN
115
n
129
GLN
115
A
ASN
116
n
130
ASN
116
A
ILE
117
n
131
ILE
117
A
ASP
118
n
132
ASP
118
A
THR
119
n
133
THR
119
A
LEU
120
n
134
LEU
120
A
GLU
121
n
135
GLU
121
A
ARG
122
n
136
ARG
122
A
GLN
123
n
137
GLN
123
A
ALA
124
n
138
ALA
124
A
GLY
125
n
139
GLY
125
A
VAL
126
n
140
VAL
126
A
LYS
127
n
141
LYS
127
A
ASP
128
n
142
ASP
128
A
ASP
129
n
143
ASP
129
A
LEU
130
n
144
LEU
130
A
ILE
131
n
145
ILE
131
A
ILE
132
n
146
ILE
132
A
GLU
133
n
147
GLU
133
A
ALA
134
n
148
ALA
134
A
HIS
135
n
149
HIS
135
A
GLY
136
n
150
GLY
136
A
SER
137
n
151
SER
137
A
PHE
138
n
152
PHE
138
A
ALA
139
n
153
ALA
139
A
HIS
140
n
154
HIS
140
A
CYS
141
n
155
CYS
141
A
HIS
142
n
156
HIS
142
A
CYS
143
n
157
CYS
143
A
ILE
144
n
158
ILE
144
A
GLY
145
n
159
GLY
145
A
CYS
146
n
160
CYS
146
A
GLY
147
n
161
GLY
147
A
LYS
148
n
162
LYS
148
A
VAL
149
n
163
VAL
149
A
TYR
150
n
164
TYR
150
A
PRO
151
n
165
PRO
151
A
PRO
152
n
166
PRO
152
A
GLN
153
n
167
GLN
153
A
VAL
154
n
168
VAL
154
A
PHE
155
n
169
PHE
155
A
LYS
156
n
170
LYS
156
A
SER
157
n
171
SER
157
A
LYS
158
n
172
LYS
158
A
LEU
159
n
173
LEU
159
A
ALA
160
n
174
ALA
160
A
GLU
161
n
175
GLU
161
A
HIS
162
n
176
HIS
162
A
PRO
163
n
177
PRO
163
A
ILE
164
n
178
ILE
164
A
LYS
165
n
179
LYS
165
A
ASP
166
n
180
ASP
166
A
PHE
167
n
181
PHE
167
A
VAL
168
n
182
VAL
168
A
LYS
169
n
183
LYS
169
A
CYS
170
n
184
CYS
170
A
ASP
171
n
185
ASP
171
A
VAL
172
n
186
VAL
172
A
CYS
173
n
187
CYS
173
A
GLY
174
n
188
GLY
174
A
GLU
175
n
189
GLU
175
A
LEU
176
n
190
LEU
176
A
VAL
177
n
191
VAL
177
A
LYS
178
n
192
LYS
178
A
PRO
179
n
193
PRO
179
A
ALA
180
n
194
ALA
180
A
ILE
181
n
195
ILE
181
A
VAL
182
n
196
VAL
182
A
PHE
183
n
197
PHE
183
A
PHE
184
n
198
PHE
184
A
GLY
185
n
199
GLY
185
A
GLU
186
n
200
GLU
186
A
ASP
187
n
201
ASP
187
A
LEU
188
n
202
LEU
188
A
PRO
189
n
203
PRO
189
A
ASP
190
n
204
ASP
190
A
SER
191
n
205
SER
191
A
PHE
192
n
206
PHE
192
A
SER
193
n
207
SER
193
A
GLU
194
n
208
GLU
194
A
THR
195
n
209
THR
195
A
TRP
196
n
210
TRP
196
A
LEU
197
n
211
LEU
197
A
ASN
198
n
212
ASN
198
A
ASP
199
n
213
ASP
199
A
SER
200
n
214
SER
200
A
GLU
201
n
215
GLU
201
A
TRP
202
n
216
TRP
202
A
LEU
203
n
217
LEU
203
A
ARG
204
n
218
ARG
204
A
GLU
205
n
219
GLU
205
A
LYS
206
n
220
LYS
206
A
ILE
207
n
221
ILE
207
A
n
222
208
A
n
223
209
A
n
224
210
A
n
225
211
A
n
226
212
A
n
227
213
A
n
228
214
A
GLN
215
n
229
GLN
215
A
GLN
216
n
230
GLN
216
A
PRO
217
n
231
PRO
217
A
LEU
218
n
232
LEU
218
A
VAL
219
n
233
VAL
219
A
ILE
220
n
234
ILE
220
A
VAL
221
n
235
VAL
221
A
VAL
222
n
236
VAL
222
A
GLY
223
n
237
GLY
223
A
THR
224
n
238
THR
224
A
SER
225
n
239
SER
225
A
LEU
226
n
240
LEU
226
A
ALA
227
n
241
ALA
227
A
VAL
228
n
242
VAL
228
A
TYR
229
n
243
TYR
229
A
PRO
230
n
244
PRO
230
A
PHE
231
n
245
PHE
231
A
ALA
232
n
246
ALA
232
A
SER
233
n
247
SER
233
A
LEU
234
n
248
LEU
234
A
PRO
235
n
249
PRO
235
A
GLU
236
n
250
GLU
236
A
GLU
237
n
251
GLU
237
A
ILE
238
n
252
ILE
238
A
PRO
239
n
253
PRO
239
A
ARG
240
n
254
ARG
240
A
LYS
241
n
255
LYS
241
A
VAL
242
n
256
VAL
242
A
LYS
243
n
257
LYS
243
A
ARG
244
n
258
ARG
244
A
VAL
245
n
259
VAL
245
A
LEU
246
n
260
LEU
246
A
CYS
247
n
261
CYS
247
A
ASN
248
n
262
ASN
248
A
LEU
249
n
263
LEU
249
A
GLU
250
n
264
GLU
250
A
THR
251
n
265
THR
251
A
VAL
252
n
266
VAL
252
A
GLY
253
n
267
GLY
253
A
ASP
254
n
268
ASP
254
A
PHE
255
n
269
PHE
255
A
LYS
256
n
270
LYS
256
A
ALA
257
n
271
ALA
257
A
ASN
258
n
272
ASN
258
A
LYS
259
n
273
LYS
259
A
ARG
260
n
274
ARG
260
A
PRO
261
n
275
PRO
261
A
THR
262
n
276
THR
262
A
ASP
263
n
277
ASP
263
A
LEU
264
n
278
LEU
264
A
ILE
265
n
279
ILE
265
A
VAL
266
n
280
VAL
266
A
HIS
267
n
281
HIS
267
A
GLN
268
n
282
GLN
268
A
TYR
269
n
283
TYR
269
A
SER
270
n
284
SER
270
A
ASP
271
n
285
ASP
271
A
GLU
272
n
286
GLU
272
A
PHE
273
n
287
PHE
273
A
ALA
274
n
288
ALA
274
A
GLU
275
n
289
GLU
275
A
GLN
276
n
290
GLN
276
A
LEU
277
n
291
LEU
277
A
VAL
278
n
292
VAL
278
A
GLU
279
n
293
GLU
279
A
GLU
280
n
294
GLU
280
A
LEU
281
n
295
LEU
281
A
GLY
282
n
296
GLY
282
A
TRP
283
n
297
TRP
283
A
GLN
284
n
298
GLN
284
A
GLU
285
n
299
GLU
285
A
ASP
286
n
300
ASP
286
A
PHE
287
n
301
PHE
287
A
GLU
288
n
302
GLU
288
A
LYS
289
n
303
LYS
289
A
ILE
290
n
304
ILE
290
A
LEU
291
n
305
LEU
291
A
THR
292
n
306
THR
292
A
ALA
293
n
307
ALA
293
A
n
308
294
A
LYS
12
n
1
LYS
12
B
GLY
13
n
2
GLY
13
B
GLY
14
n
3
GLY
14
B
ALA
15
n
4
ALA
15
B
ALY
16
n
5
ALY
16
B
ARG
17
n
6
ARG
17
B
HIS
18
n
7
HIS
18
B
ARG
19
n
8
ARG
19
B
n
9
20
B
n
10
21
B
n
11
22
B
software_defined_assembly
PISA
4
tetrameric
author_defined_assembly
2
dimeric
A
CYS
143
A
SG
CYS
157
1_555
A
ZN
701
C
ZN
ZN
1_555
A
CYS
146
A
SG
CYS
160
1_555
117.8
A
CYS
143
A
SG
CYS
157
1_555
A
ZN
701
C
ZN
ZN
1_555
A
CYS
170
A
SG
CYS
184
1_555
100.2
A
CYS
146
A
SG
CYS
160
1_555
A
ZN
701
C
ZN
ZN
1_555
A
CYS
170
A
SG
CYS
184
1_555
109.8
A
CYS
143
A
SG
CYS
157
1_555
A
ZN
701
C
ZN
ZN
1_555
A
CYS
173
A
SG
CYS
187
1_555
87.4
A
CYS
146
A
SG
CYS
160
1_555
A
ZN
701
C
ZN
ZN
1_555
A
CYS
173
A
SG
CYS
187
1_555
127.4
A
CYS
170
A
SG
CYS
184
1_555
A
ZN
701
C
ZN
ZN
1_555
A
CYS
173
A
SG
CYS
187
1_555
109.6
B
ALY
16
N(6)-ACETYLLYSINE
B
ALY
5
LYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_556
y,x,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
67.1000000000
A
O
ILE
132
A
O
ILE
146
A
N
THR
114
A
N
THR
128
A
O
TYR
113
A
O
TYR
127
A
N
PHE
29
A
N
PHE
43
A
N
MET
30
A
N
MET
44
A
O
VAL
222
A
O
VAL
236
A
N
VAL
221
A
N
VAL
235
A
O
CYS
247
A
O
CYS
261
A
N
LEU
246
A
N
LEU
260
A
O
VAL
266
A
O
VAL
280
A
O
TYR
150
A
O
TYR
164
A
N
CYS
141
A
N
CYS
155
A
N
HIS
140
A
N
HIS
154
A
O
ALA
180
A
O
ALA
194
1
A
OG
SER
4
A
OG
SER
18
1
Y
1
A
CB
ALA
160
A
CB
ALA
174
1
Y
1
A
CG
GLN
215
A
CG
GLN
229
1
Y
1
A
CD
GLN
215
A
CD
GLN
229
1
Y
1
A
OE1
GLN
215
A
OE1
GLN
229
1
Y
1
A
NE2
GLN
215
A
NE2
GLN
229
1
Y
1
A
CB
GLU
285
A
CB
GLU
299
1
Y
1
A
CG
GLU
285
A
CG
GLU
299
1
Y
1
A
CD
GLU
285
A
CD
GLU
299
1
Y
1
A
OE1
GLU
285
A
OE1
GLU
299
1
Y
1
A
OE2
GLU
285
A
OE2
GLU
299
1
Y
1
B
CG
ARG
19
B
CG
ARG
8
1
Y
1
B
CD
ARG
19
B
CD
ARG
8
1
Y
1
B
NE
ARG
19
B
NE
ARG
8
1
Y
1
B
CZ
ARG
19
B
CZ
ARG
8
1
Y
1
B
NH1
ARG
19
B
NH1
ARG
8
1
Y
1
B
NH2
ARG
19
B
NH2
ARG
8
1
Y
1
A
MET
-13
A
MET
1
1
Y
1
A
ARG
-12
A
ARG
2
1
Y
1
A
GLY
-11
A
GLY
3
1
Y
1
A
SER
-10
A
SER
4
1
Y
1
A
HIS
-9
A
HIS
5
1
Y
1
A
HIS
-8
A
HIS
6
1
Y
1
A
HIS
-7
A
HIS
7
1
Y
1
A
HIS
-6
A
HIS
8
1
Y
1
A
HIS
-5
A
HIS
9
1
Y
1
A
HIS
-4
A
HIS
10
1
Y
1
A
GLY
-3
A
GLY
11
1
Y
1
A
THR
208
A
THR
222
1
Y
1
A
THR
209
A
THR
223
1
Y
1
A
SER
210
A
SER
224
1
Y
1
A
GLY
211
A
GLY
225
1
Y
1
A
LYS
212
A
LYS
226
1
Y
1
A
HIS
213
A
HIS
227
1
Y
1
A
PRO
214
A
PRO
228
1
Y
1
A
GLN
294
A
GLN
308
1
Y
1
B
LYS
20
B
LYS
9
1
Y
1
B
ILE
21
B
ILE
10
1
Y
1
B
LEU
22
B
LEU
11
1
Y
1
A
A
NH2
NH2
ARG
ARG
204
204
1.99
1_555
6_765
1
A
A
NE
NE
ARG
ARG
204
204
2.11
1_555
6_765
1
A
ASN
22
-108.01
74.43
1
A
LEU
58
-64.46
11.13
1
A
PRO
63
-36.04
-71.33
1
A
GLU
64
-55.35
-9.03
1
A
ASP
75
-167.29
96.49
1
A
ASP
166
62.58
93.16
1
A
VAL
172
-120.59
-52.25
1
A
ALA
180
-67.46
40.07
1
A
ALA
232
-67.48
10.18
protein_rep.param
CNS_TOPPAR:ion.param
HPD.param
CNS_TOPPAR:water_rep.param
29.994
-5.905
0.000
0.000
-5.905
0.000
11.810
0.253
0.214
2.0
41.92
999
27790
9.100
92.700
1
0.00
MOLECULAR REPLACEMENT
1SZD
37.894
2.0
41.92
136
2518
36
0
2346
1.098
1.500
1.643
2.000
1.889
2.000
2.587
2.500
2.0
50.0
2QQF
28628
6.5
6.5
0.064
0.053
1
94
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns.csb.yale.edu/v1.1/
CNS
package
data extraction
PDB
sw-help@rcsb.rutgers.edu
July 2, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.000
data collection
HKL-2000
data reduction
HKL-2000
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
Hst2 bound to ADP-HPD and Acetylated histone H4
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
THR
8
A
THR
22
HELX_P
A
ASN
22
A
ASN
36
1
1
15
A
ALA
33
A
ALA
47
HELX_P
A
GLY
40
A
GLY
54
5
2
8
A
THR
49
A
THR
63
HELX_P
A
LEU
58
A
LEU
72
1
3
10
A
TYR
62
A
TYR
76
HELX_P
A
PHE
67
A
PHE
81
5
4
6
A
ASP
68
A
ASP
82
HELX_P
A
ASP
75
A
ASP
89
1
5
8
A
PRO
76
A
PRO
90
HELX_P
A
TYR
87
A
TYR
101
1
6
12
A
SER
94
A
SER
108
HELX_P
A
LYS
106
A
LYS
120
1
7
13
A
THR
119
A
THR
133
HELX_P
A
ALA
124
A
ALA
138
1
8
6
A
LYS
127
A
LYS
141
HELX_P
A
ASP
129
A
ASP
143
5
9
3
A
PRO
151
A
PRO
165
HELX_P
A
LYS
158
A
LYS
172
1
10
8
A
PRO
189
A
PRO
203
HELX_P
A
GLU
205
A
GLU
219
1
11
17
A
PRO
230
A
PRO
244
HELX_P
A
LEU
234
A
LEU
248
5
12
5
A
GLY
253
A
GLY
267
HELX_P
A
ASN
258
A
ASN
272
1
13
6
A
TYR
269
A
TYR
283
HELX_P
A
LEU
281
A
LEU
295
1
14
13
A
TRP
283
A
TRP
297
HELX_P
A
THR
292
A
THR
306
1
15
10
covale
1.332
both
B
ALA
15
B
C
ALA
4
1_555
B
ALY
16
B
N
ALY
5
1_555
covale
1.330
both
B
ALY
16
B
C
ALY
5
1_555
B
ARG
17
B
N
ARG
6
1_555
metalc
2.476
A
CYS
143
A
SG
CYS
157
1_555
A
ZN
701
C
ZN
ZN
1_555
metalc
2.432
A
CYS
146
A
SG
CYS
160
1_555
A
ZN
701
C
ZN
ZN
1_555
metalc
2.368
A
CYS
170
A
SG
CYS
184
1_555
A
ZN
701
C
ZN
ZN
1_555
metalc
2.455
A
CYS
173
A
SG
CYS
187
1_555
A
ZN
701
C
ZN
ZN
1_555
HYDROLASE
Sir2, Hst2, histone deacetylase, SN1, Hydrolase, Metal-binding, NAD, Nucleus, Repressor, Transcription, Transcription regulation, Zinc
A
HIS
162
A
HIS
176
1
A
PRO
163
A
PRO
177
-0.18
A
TYR
229
A
TYR
243
1
A
PRO
230
A
PRO
244
0.07
HST2_YEAST
UNP
1
1
P53686
MSVSTASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFY
TLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLA
EHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPR
KVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQEDFEKILTAQ
H4_YEAST
UNP
2
13
P02309
KGGAKRHRKIL
1
294
2QQF
1
294
P53686
A
1
15
308
13
23
2QQF
12
22
P02309
B
2
1
11
1
expression tag
MET
-13
2QQF
A
P53686
UNP
1
1
expression tag
ARG
-12
2QQF
A
P53686
UNP
2
1
expression tag
GLY
-11
2QQF
A
P53686
UNP
3
1
expression tag
SER
-10
2QQF
A
P53686
UNP
4
1
expression tag
HIS
-9
2QQF
A
P53686
UNP
5
1
expression tag
HIS
-8
2QQF
A
P53686
UNP
6
1
expression tag
HIS
-7
2QQF
A
P53686
UNP
7
1
expression tag
HIS
-6
2QQF
A
P53686
UNP
8
1
expression tag
HIS
-5
2QQF
A
P53686
UNP
9
1
expression tag
HIS
-4
2QQF
A
P53686
UNP
10
1
expression tag
GLY
-3
2QQF
A
P53686
UNP
11
1
expression tag
MET
-2
2QQF
A
P53686
UNP
12
1
expression tag
ALA
-1
2QQF
A
P53686
UNP
13
1
expression tag
SER
0
2QQF
A
P53686
UNP
14
6
3
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
ILE
131
A
ILE
145
A
GLU
133
A
GLU
147
A
LEU
109
A
LEU
123
A
THR
114
A
THR
128
A
VAL
27
A
VAL
41
A
VAL
31
A
VAL
45
A
LEU
218
A
LEU
232
A
VAL
222
A
VAL
236
A
ARG
244
A
ARG
258
A
ASN
248
A
ASN
262
A
LEU
264
A
LEU
278
A
HIS
267
A
HIS
281
A
VAL
149
A
VAL
163
A
TYR
150
A
TYR
164
A
GLY
136
A
GLY
150
A
CYS
143
A
CYS
157
A
VAL
177
A
VAL
191
A
ILE
181
A
ILE
195
BINDING SITE FOR RESIDUE ZN A 701
A
ZN
701
Software
4
BINDING SITE FOR RESIDUE A1R A 1001
A
A1R
1001
Software
27
A
CYS
143
A
CYS
157
4
1_555
A
CYS
146
A
CYS
160
4
1_555
A
CYS
170
A
CYS
184
4
1_555
A
CYS
173
A
CYS
187
4
1_555
A
GLY
32
A
GLY
46
27
1_555
A
ALA
33
A
ALA
47
27
1_555
A
GLY
34
A
GLY
48
27
1_555
A
THR
37
A
THR
51
27
1_555
A
PHE
44
A
PHE
58
27
1_555
A
ARG
45
A
ARG
59
27
1_555
A
GLU
64
A
GLU
78
27
1_555
A
GLN
115
A
GLN
129
27
1_555
A
GLY
223
A
GLY
237
27
1_555
A
THR
224
A
THR
238
27
1_555
A
SER
225
A
SER
239
27
1_555
A
VAL
228
A
VAL
242
27
1_555
A
ASN
248
A
ASN
262
27
1_555
A
LEU
249
A
LEU
263
27
1_555
A
GLN
268
A
GLN
282
27
1_555
A
TYR
269
A
TYR
283
27
1_555
A
SER
270
A
SER
284
27
1_555
A
HOH
1010
E
HOH
27
1_555
A
HOH
1023
E
HOH
27
1_555
A
HOH
1024
E
HOH
27
1_555
A
HOH
1028
E
HOH
27
1_555
A
HOH
1075
E
HOH
27
1_555
A
HOH
1133
E
HOH
27
1_555
B
HIS
18
B
HIS
7
27
1_555
B
HOH
50
F
HOH
27
1_555
B
HOH
51
F
HOH
27
1_555
B
HOH
52
F
HOH
27
1_555
154
P 32 2 1