0.019433
0.000000
0.000000
0.000000
0.016132
0.000000
0.000000
0.000000
0.014282
0.000000
0.000000
0.000000
Bailey, L.J.
McCoy, J.G.
Bitto, E.
Bingman, C.A.
Fox, B.G.
Wesenberg, G.E.
Phillips Jr., G.N.
Center for Eukaryotic Structural Genomics (CESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
51.460
61.990
70.020
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C15 H17 N3 O5
319.313
n
{2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid
PEPTIDE DERIVED CHROMOPHORE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
R
C
N
77
R
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
N
N
82
N
N
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
C
N
87
N
C
N
88
N
O
N
89
N
C
Y
90
N
C
Y
91
N
C
Y
92
N
C
Y
93
N
C
Y
94
N
C
Y
95
N
C
N
96
N
O
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
R
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
S
N
121
N
O
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
S
C
N
131
N
C
N
132
N
O
N
133
N
C
N
134
N
C
N
135
N
C
N
136
N
O
N
137
N
N
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
N
N
150
S
C
N
151
N
C
N
152
N
O
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
O
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
N
N
169
N
C
N
170
N
C
N
171
N
O
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
N
N
179
S
C
N
180
N
C
N
181
N
O
N
182
N
C
Y
183
N
C
Y
184
N
N
Y
185
N
C
Y
186
N
C
Y
187
N
N
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
S
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
O
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
N
N
225
S
C
N
226
N
C
N
227
N
O
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
O
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
N
N
247
S
C
N
248
N
C
N
249
N
O
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
N
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
N
276
N
C
N
277
N
S
N
278
N
C
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
O
N
296
N
C
N
297
N
C
N
298
N
SE
N
299
N
C
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
N
339
N
C
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
R
C
N
370
N
O
N
371
N
C
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
N
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
N
N
410
S
C
N
411
N
C
N
412
N
O
N
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
N
420
N
O
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
C
N
439
N
C
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
Y
75
N
doub
Y
76
N
sing
N
77
N
sing
Y
78
N
sing
Y
79
N
doub
N
80
N
doub
N
81
N
sing
N
82
N
sing
Y
83
N
doub
Y
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
Z
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
Y
181
N
sing
Y
182
N
doub
Y
183
N
doub
N
184
N
sing
Y
185
N
sing
N
186
N
sing
Y
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
doub
N
313
N
sing
Y
314
N
doub
N
315
N
sing
Y
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
Y
377
N
doub
Y
378
N
sing
Y
379
N
sing
N
380
N
sing
Y
381
N
doub
Y
382
N
sing
Y
383
N
sing
N
384
N
sing
Y
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
Y
405
N
doub
Y
406
N
sing
Y
407
N
sing
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
doub
N
412
N
sing
Y
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
To be Published
0353
Crystal Structure of a Cyclized GFP Variant.
10.2210/pdb2qu1/pdb
pdb_00002qu1
100
1
MONTEL OPTICS
CCD
2007-04-01
BRUKER PROTEUM-R
Graded Multilayer
SINGLE WAVELENGTH
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
BRUKER AXS MICROSTAR
27253.852
Green fluorescent protein
1
man
polymer
40.078
CALCIUM ION
1
syn
non-polymer
18.015
water
377
nat
water
no
yes
AIA(MSE)SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTL(CRO)VQCF
SRYPDH(MSE)KQHDFFKSA(MSE)PEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEY
NYNSHNVYITADKQKNGIKANFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDH(MSE)V
LLEFVTAAGITHG(MSE)DELYK
AIAMSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDH
MKQHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQ
KNGIKANFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITHGMDELY
K
A
GO.91571
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Aequorea
Escherichia
sample
GFP
6100
Aequorea victoria
562
Escherichia coli
B834 P(RARE2)
Plasmid
pVP62K
1
2.2
42.8
VAPOR DIFFUSION, HANGING DROP
Protein solution (4.95 mg/ml Protein, 0.050 M Sodium chloride, 0.0003 M TCEP, 0.005 M Bis-Tris pH 7.0) mixed in a 1:1 ratio with the Well solution (0.080 M Calcium chloride, 15% PEG 4000, 0.1 M HEPPS pH 8.5) and cryoprotected with well solution supplemented with 20% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
Center for Eukaryotic Structural Genomics
CESG
PSI, Protein Structure Initiative
database_2
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
Data collection
1
0
2007-09-11
1
1
2011-07-13
1
2
2021-10-20
1
3
2023-08-30
1
4
2023-11-15
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn_type.id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
Y
RCSB
Y
RCSB
2007-08-03
REL
REL
CA
CALCIUM ION
HOH
water
2G6E
PDB entry 2G6E
PDB
experimental model
CA
1
2
CA
CA
239
A
HOH
3
3
HOH
HOH
240
A
HOH
4
3
HOH
HOH
241
A
HOH
5
3
HOH
HOH
242
A
HOH
6
3
HOH
HOH
243
A
HOH
7
3
HOH
HOH
244
A
HOH
8
3
HOH
HOH
245
A
HOH
9
3
HOH
HOH
246
A
HOH
10
3
HOH
HOH
247
A
HOH
12
3
HOH
HOH
248
A
HOH
13
3
HOH
HOH
249
A
HOH
14
3
HOH
HOH
250
A
HOH
15
3
HOH
HOH
251
A
HOH
16
3
HOH
HOH
252
A
HOH
17
3
HOH
HOH
253
A
HOH
18
3
HOH
HOH
254
A
HOH
19
3
HOH
HOH
255
A
HOH
20
3
HOH
HOH
256
A
HOH
21
3
HOH
HOH
257
A
HOH
22
3
HOH
HOH
258
A
HOH
23
3
HOH
HOH
259
A
HOH
24
3
HOH
HOH
260
A
HOH
25
3
HOH
HOH
261
A
HOH
26
3
HOH
HOH
262
A
HOH
27
3
HOH
HOH
263
A
HOH
28
3
HOH
HOH
264
A
HOH
29
3
HOH
HOH
265
A
HOH
30
3
HOH
HOH
266
A
HOH
31
3
HOH
HOH
267
A
HOH
32
3
HOH
HOH
268
A
HOH
33
3
HOH
HOH
269
A
HOH
34
3
HOH
HOH
270
A
HOH
35
3
HOH
HOH
271
A
HOH
36
3
HOH
HOH
272
A
HOH
38
3
HOH
HOH
273
A
HOH
39
3
HOH
HOH
274
A
HOH
40
3
HOH
HOH
275
A
HOH
41
3
HOH
HOH
276
A
HOH
42
3
HOH
HOH
277
A
HOH
43
3
HOH
HOH
278
A
HOH
44
3
HOH
HOH
279
A
HOH
45
3
HOH
HOH
280
A
HOH
46
3
HOH
HOH
281
A
HOH
47
3
HOH
HOH
282
A
HOH
48
3
HOH
HOH
283
A
HOH
49
3
HOH
HOH
284
A
HOH
50
3
HOH
HOH
285
A
HOH
51
3
HOH
HOH
286
A
HOH
52
3
HOH
HOH
287
A
HOH
53
3
HOH
HOH
288
A
HOH
54
3
HOH
HOH
289
A
HOH
55
3
HOH
HOH
290
A
HOH
56
3
HOH
HOH
291
A
HOH
57
3
HOH
HOH
292
A
HOH
58
3
HOH
HOH
293
A
HOH
59
3
HOH
HOH
294
A
HOH
60
3
HOH
HOH
295
A
HOH
61
3
HOH
HOH
296
A
HOH
62
3
HOH
HOH
297
A
HOH
63
3
HOH
HOH
298
A
HOH
64
3
HOH
HOH
299
A
HOH
65
3
HOH
HOH
300
A
HOH
66
3
HOH
HOH
301
A
HOH
67
3
HOH
HOH
302
A
HOH
68
3
HOH
HOH
303
A
HOH
69
3
HOH
HOH
304
A
HOH
70
3
HOH
HOH
305
A
HOH
71
3
HOH
HOH
306
A
HOH
72
3
HOH
HOH
307
A
HOH
73
3
HOH
HOH
308
A
HOH
74
3
HOH
HOH
309
A
HOH
75
3
HOH
HOH
310
A
HOH
76
3
HOH
HOH
311
A
HOH
77
3
HOH
HOH
312
A
HOH
78
3
HOH
HOH
313
A
HOH
79
3
HOH
HOH
314
A
HOH
80
3
HOH
HOH
315
A
HOH
81
3
HOH
HOH
316
A
HOH
82
3
HOH
HOH
317
A
HOH
83
3
HOH
HOH
318
A
HOH
84
3
HOH
HOH
319
A
HOH
85
3
HOH
HOH
320
A
HOH
86
3
HOH
HOH
321
A
HOH
87
3
HOH
HOH
322
A
HOH
88
3
HOH
HOH
323
A
HOH
89
3
HOH
HOH
324
A
HOH
90
3
HOH
HOH
325
A
HOH
91
3
HOH
HOH
326
A
HOH
92
3
HOH
HOH
327
A
HOH
93
3
HOH
HOH
328
A
HOH
94
3
HOH
HOH
329
A
HOH
95
3
HOH
HOH
330
A
HOH
96
3
HOH
HOH
331
A
HOH
97
3
HOH
HOH
332
A
HOH
98
3
HOH
HOH
333
A
HOH
99
3
HOH
HOH
334
A
HOH
100
3
HOH
HOH
335
A
HOH
101
3
HOH
HOH
336
A
HOH
102
3
HOH
HOH
337
A
HOH
103
3
HOH
HOH
338
A
HOH
105
3
HOH
HOH
339
A
HOH
106
3
HOH
HOH
340
A
HOH
107
3
HOH
HOH
341
A
HOH
108
3
HOH
HOH
342
A
HOH
109
3
HOH
HOH
343
A
HOH
110
3
HOH
HOH
344
A
HOH
111
3
HOH
HOH
345
A
HOH
112
3
HOH
HOH
346
A
HOH
113
3
HOH
HOH
347
A
HOH
114
3
HOH
HOH
348
A
HOH
115
3
HOH
HOH
349
A
HOH
116
3
HOH
HOH
350
A
HOH
117
3
HOH
HOH
351
A
HOH
118
3
HOH
HOH
352
A
HOH
119
3
HOH
HOH
353
A
HOH
120
3
HOH
HOH
354
A
HOH
123
3
HOH
HOH
355
A
HOH
124
3
HOH
HOH
356
A
HOH
125
3
HOH
HOH
357
A
HOH
126
3
HOH
HOH
358
A
HOH
127
3
HOH
HOH
359
A
HOH
129
3
HOH
HOH
360
A
HOH
130
3
HOH
HOH
361
A
HOH
131
3
HOH
HOH
362
A
HOH
132
3
HOH
HOH
363
A
HOH
133
3
HOH
HOH
364
A
HOH
135
3
HOH
HOH
365
A
HOH
136
3
HOH
HOH
366
A
HOH
137
3
HOH
HOH
367
A
HOH
138
3
HOH
HOH
368
A
HOH
139
3
HOH
HOH
369
A
HOH
140
3
HOH
HOH
370
A
HOH
141
3
HOH
HOH
371
A
HOH
143
3
HOH
HOH
372
A
HOH
144
3
HOH
HOH
373
A
HOH
145
3
HOH
HOH
374
A
HOH
148
3
HOH
HOH
375
A
HOH
149
3
HOH
HOH
376
A
HOH
150
3
HOH
HOH
377
A
HOH
152
3
HOH
HOH
378
A
HOH
153
3
HOH
HOH
379
A
HOH
155
3
HOH
HOH
380
A
HOH
156
3
HOH
HOH
381
A
HOH
158
3
HOH
HOH
382
A
HOH
159
3
HOH
HOH
383
A
HOH
160
3
HOH
HOH
384
A
HOH
161
3
HOH
HOH
385
A
HOH
162
3
HOH
HOH
386
A
HOH
163
3
HOH
HOH
387
A
HOH
164
3
HOH
HOH
388
A
HOH
165
3
HOH
HOH
389
A
HOH
166
3
HOH
HOH
390
A
HOH
167
3
HOH
HOH
391
A
HOH
168
3
HOH
HOH
392
A
HOH
169
3
HOH
HOH
393
A
HOH
170
3
HOH
HOH
394
A
HOH
171
3
HOH
HOH
395
A
HOH
172
3
HOH
HOH
396
A
HOH
173
3
HOH
HOH
397
A
HOH
174
3
HOH
HOH
398
A
HOH
175
3
HOH
HOH
399
A
HOH
176
3
HOH
HOH
400
A
HOH
177
3
HOH
HOH
401
A
HOH
179
3
HOH
HOH
402
A
HOH
181
3
HOH
HOH
403
A
HOH
182
3
HOH
HOH
404
A
HOH
183
3
HOH
HOH
405
A
HOH
184
3
HOH
HOH
406
A
HOH
186
3
HOH
HOH
407
A
HOH
187
3
HOH
HOH
408
A
HOH
189
3
HOH
HOH
409
A
HOH
190
3
HOH
HOH
410
A
HOH
191
3
HOH
HOH
411
A
HOH
192
3
HOH
HOH
412
A
HOH
193
3
HOH
HOH
413
A
HOH
194
3
HOH
HOH
414
A
HOH
196
3
HOH
HOH
415
A
HOH
197
3
HOH
HOH
416
A
HOH
199
3
HOH
HOH
417
A
HOH
200
3
HOH
HOH
418
A
HOH
201
3
HOH
HOH
419
A
HOH
202
3
HOH
HOH
420
A
HOH
204
3
HOH
HOH
421
A
HOH
205
3
HOH
HOH
422
A
HOH
206
3
HOH
HOH
423
A
HOH
207
3
HOH
HOH
424
A
HOH
208
3
HOH
HOH
425
A
HOH
209
3
HOH
HOH
426
A
HOH
210
3
HOH
HOH
427
A
HOH
211
3
HOH
HOH
428
A
HOH
212
3
HOH
HOH
429
A
HOH
213
3
HOH
HOH
430
A
HOH
214
3
HOH
HOH
431
A
HOH
215
3
HOH
HOH
432
A
HOH
217
3
HOH
HOH
433
A
HOH
218
3
HOH
HOH
434
A
HOH
219
3
HOH
HOH
435
A
HOH
220
3
HOH
HOH
436
A
HOH
221
3
HOH
HOH
437
A
HOH
222
3
HOH
HOH
438
A
HOH
223
3
HOH
HOH
439
A
HOH
224
3
HOH
HOH
440
A
HOH
225
3
HOH
HOH
441
A
HOH
227
3
HOH
HOH
442
A
HOH
229
3
HOH
HOH
443
A
HOH
230
3
HOH
HOH
444
A
HOH
231
3
HOH
HOH
445
A
HOH
233
3
HOH
HOH
446
A
HOH
234
3
HOH
HOH
447
A
HOH
235
3
HOH
HOH
448
A
HOH
236
3
HOH
HOH
449
A
HOH
239
3
HOH
HOH
450
A
HOH
241
3
HOH
HOH
451
A
HOH
243
3
HOH
HOH
452
A
HOH
245
3
HOH
HOH
453
A
HOH
246
3
HOH
HOH
454
A
HOH
247
3
HOH
HOH
455
A
HOH
248
3
HOH
HOH
456
A
HOH
253
3
HOH
HOH
457
A
HOH
255
3
HOH
HOH
458
A
HOH
256
3
HOH
HOH
459
A
HOH
257
3
HOH
HOH
460
A
HOH
259
3
HOH
HOH
461
A
HOH
264
3
HOH
HOH
462
A
HOH
265
3
HOH
HOH
463
A
HOH
268
3
HOH
HOH
464
A
HOH
270
3
HOH
HOH
465
A
HOH
271
3
HOH
HOH
466
A
HOH
273
3
HOH
HOH
467
A
HOH
274
3
HOH
HOH
468
A
HOH
277
3
HOH
HOH
469
A
HOH
280
3
HOH
HOH
470
A
HOH
281
3
HOH
HOH
471
A
HOH
282
3
HOH
HOH
472
A
HOH
283
3
HOH
HOH
473
A
HOH
284
3
HOH
HOH
474
A
HOH
285
3
HOH
HOH
475
A
HOH
286
3
HOH
HOH
476
A
HOH
290
3
HOH
HOH
477
A
HOH
291
3
HOH
HOH
478
A
HOH
295
3
HOH
HOH
479
A
HOH
302
3
HOH
HOH
480
A
HOH
303
3
HOH
HOH
481
A
HOH
304
3
HOH
HOH
482
A
HOH
305
3
HOH
HOH
483
A
HOH
306
3
HOH
HOH
484
A
HOH
307
3
HOH
HOH
485
A
HOH
308
3
HOH
HOH
486
A
HOH
309
3
HOH
HOH
487
A
HOH
310
3
HOH
HOH
488
A
HOH
311
3
HOH
HOH
489
A
HOH
312
3
HOH
HOH
490
A
HOH
314
3
HOH
HOH
491
A
HOH
315
3
HOH
HOH
492
A
HOH
317
3
HOH
HOH
493
A
HOH
318
3
HOH
HOH
494
A
HOH
319
3
HOH
HOH
495
A
HOH
320
3
HOH
HOH
496
A
HOH
321
3
HOH
HOH
497
A
HOH
324
3
HOH
HOH
498
A
HOH
325
3
HOH
HOH
499
A
HOH
326
3
HOH
HOH
500
A
HOH
327
3
HOH
HOH
501
A
HOH
328
3
HOH
HOH
502
A
HOH
329
3
HOH
HOH
503
A
HOH
330
3
HOH
HOH
504
A
HOH
331
3
HOH
HOH
505
A
HOH
333
3
HOH
HOH
506
A
HOH
334
3
HOH
HOH
507
A
HOH
335
3
HOH
HOH
508
A
HOH
337
3
HOH
HOH
509
A
HOH
339
3
HOH
HOH
510
A
HOH
342
3
HOH
HOH
511
A
HOH
345
3
HOH
HOH
512
A
HOH
348
3
HOH
HOH
513
A
HOH
349
3
HOH
HOH
514
A
HOH
351
3
HOH
HOH
515
A
HOH
352
3
HOH
HOH
516
A
HOH
353
3
HOH
HOH
517
A
HOH
354
3
HOH
HOH
518
A
HOH
355
3
HOH
HOH
519
A
HOH
356
3
HOH
HOH
520
A
HOH
357
3
HOH
HOH
521
A
HOH
358
3
HOH
HOH
522
A
HOH
359
3
HOH
HOH
523
A
HOH
361
3
HOH
HOH
524
A
HOH
362
3
HOH
HOH
525
A
HOH
363
3
HOH
HOH
526
A
HOH
365
3
HOH
HOH
527
A
HOH
366
3
HOH
HOH
528
A
HOH
367
3
HOH
HOH
529
A
HOH
368
3
HOH
HOH
530
A
HOH
369
3
HOH
HOH
531
A
HOH
370
3
HOH
HOH
532
A
HOH
371
3
HOH
HOH
533
A
HOH
372
3
HOH
HOH
534
A
HOH
374
3
HOH
HOH
535
A
HOH
375
3
HOH
HOH
536
A
HOH
376
3
HOH
HOH
537
A
HOH
377
3
HOH
HOH
538
A
HOH
378
3
HOH
HOH
539
A
HOH
379
3
HOH
HOH
540
A
HOH
380
3
HOH
HOH
541
A
HOH
381
3
HOH
HOH
542
A
HOH
382
3
HOH
HOH
543
A
HOH
383
3
HOH
HOH
544
A
HOH
384
3
HOH
HOH
545
A
HOH
386
3
HOH
HOH
546
A
HOH
388
3
HOH
HOH
547
A
HOH
389
3
HOH
HOH
548
A
HOH
391
3
HOH
HOH
549
A
HOH
394
3
HOH
HOH
550
A
HOH
396
3
HOH
HOH
551
A
HOH
397
3
HOH
HOH
552
A
HOH
399
3
HOH
HOH
553
A
HOH
403
3
HOH
HOH
554
A
HOH
404
3
HOH
HOH
555
A
HOH
405
3
HOH
HOH
556
A
HOH
406
3
HOH
HOH
557
A
HOH
407
3
HOH
HOH
558
A
HOH
408
3
HOH
HOH
559
A
HOH
411
3
HOH
HOH
560
A
HOH
412
3
HOH
HOH
561
A
HOH
413
3
HOH
HOH
562
A
HOH
414
3
HOH
HOH
563
A
HOH
415
3
HOH
HOH
564
A
HOH
416
3
HOH
HOH
565
A
HOH
417
3
HOH
HOH
566
A
HOH
419
3
HOH
HOH
567
A
HOH
421
3
HOH
HOH
568
A
HOH
424
3
HOH
HOH
569
A
HOH
425
3
HOH
HOH
570
A
HOH
426
3
HOH
HOH
571
A
HOH
427
3
HOH
HOH
572
A
HOH
428
3
HOH
HOH
573
A
HOH
429
3
HOH
HOH
574
A
HOH
430
3
HOH
HOH
575
A
HOH
431
3
HOH
HOH
576
A
HOH
433
3
HOH
HOH
577
A
HOH
434
3
HOH
HOH
578
A
HOH
435
3
HOH
HOH
579
A
HOH
436
3
HOH
HOH
580
A
HOH
442
3
HOH
HOH
581
A
HOH
443
3
HOH
HOH
582
A
HOH
444
3
HOH
HOH
583
A
HOH
445
3
HOH
HOH
584
A
HOH
446
3
HOH
HOH
585
A
HOH
447
3
HOH
HOH
586
A
HOH
450
3
HOH
HOH
587
A
HOH
451
3
HOH
HOH
588
A
HOH
452
3
HOH
HOH
589
A
HOH
453
3
HOH
HOH
590
A
HOH
454
3
HOH
HOH
591
A
HOH
455
3
HOH
HOH
592
A
HOH
456
3
HOH
HOH
593
A
HOH
457
3
HOH
HOH
594
A
HOH
458
3
HOH
HOH
595
A
HOH
459
3
HOH
HOH
596
A
HOH
460
3
HOH
HOH
597
A
HOH
461
3
HOH
HOH
598
A
HOH
462
3
HOH
HOH
599
A
HOH
463
3
HOH
HOH
600
A
HOH
464
3
HOH
HOH
601
A
HOH
465
3
HOH
HOH
602
A
HOH
466
3
HOH
HOH
603
A
HOH
467
3
HOH
HOH
604
A
HOH
468
3
HOH
HOH
605
A
HOH
469
3
HOH
HOH
606
A
HOH
470
3
HOH
HOH
607
A
HOH
471
3
HOH
HOH
608
A
HOH
472
3
HOH
HOH
609
A
HOH
473
3
HOH
HOH
610
A
HOH
474
3
HOH
HOH
611
A
HOH
475
3
HOH
HOH
612
A
HOH
476
3
HOH
HOH
613
A
HOH
477
3
HOH
HOH
614
A
HOH
478
3
HOH
HOH
615
A
HOH
479
3
HOH
HOH
616
A
0.380
0.639
3.000
3.000
46.410
46.410
ALA
-2
n
1
ALA
-2
A
ILE
-1
n
2
ILE
-1
A
ALA
0
n
3
ALA
0
A
MSE
1
n
4
MSE
1
A
SER
2
n
5
SER
2
A
LYS
3
n
6
LYS
3
A
GLY
4
n
7
GLY
4
A
GLU
5
n
8
GLU
5
A
GLU
6
n
9
GLU
6
A
LEU
7
n
10
LEU
7
A
PHE
8
n
11
PHE
8
A
THR
9
n
12
THR
9
A
GLY
10
n
13
GLY
10
A
VAL
11
n
14
VAL
11
A
VAL
12
n
15
VAL
12
A
PRO
13
n
16
PRO
13
A
ILE
14
n
17
ILE
14
A
LEU
15
n
18
LEU
15
A
VAL
16
n
19
VAL
16
A
GLU
17
n
20
GLU
17
A
LEU
18
n
21
LEU
18
A
ASP
19
n
22
ASP
19
A
GLY
20
n
23
GLY
20
A
ASP
21
n
24
ASP
21
A
VAL
22
n
25
VAL
22
A
ASN
23
n
26
ASN
23
A
GLY
24
n
27
GLY
24
A
HIS
25
n
28
HIS
25
A
LYS
26
n
29
LYS
26
A
PHE
27
n
30
PHE
27
A
SER
28
n
31
SER
28
A
VAL
29
n
32
VAL
29
A
SER
30
n
33
SER
30
A
GLY
31
n
34
GLY
31
A
GLU
32
n
35
GLU
32
A
GLY
33
n
36
GLY
33
A
GLU
34
n
37
GLU
34
A
GLY
35
n
38
GLY
35
A
ASP
36
n
39
ASP
36
A
ALA
37
n
40
ALA
37
A
THR
38
n
41
THR
38
A
TYR
39
n
42
TYR
39
A
GLY
40
n
43
GLY
40
A
LYS
41
n
44
LYS
41
A
LEU
42
n
45
LEU
42
A
THR
43
n
46
THR
43
A
LEU
44
n
47
LEU
44
A
LYS
45
n
48
LYS
45
A
PHE
46
n
49
PHE
46
A
ILE
47
n
50
ILE
47
A
CYS
48
n
51
CYS
48
A
THR
49
n
52
THR
49
A
THR
50
n
53
THR
50
A
GLY
51
n
54
GLY
51
A
LYS
52
n
55
LYS
52
A
LEU
53
n
56
LEU
53
A
PRO
54
n
57
PRO
54
A
VAL
55
n
58
VAL
55
A
PRO
56
n
59
PRO
56
A
TRP
57
n
60
TRP
57
A
PRO
58
n
61
PRO
58
A
THR
59
n
62
THR
59
A
LEU
60
n
63
LEU
60
A
VAL
61
n
64
VAL
61
A
THR
62
n
65
THR
62
A
THR
63
n
66
THR
63
A
LEU
64
n
67
LEU
64
A
CRO
65
n
68
CRO
65
A
VAL
68
n
69
VAL
68
A
GLN
69
n
70
GLN
69
A
CYS
70
n
71
CYS
70
A
PHE
71
n
72
PHE
71
A
SER
72
n
73
SER
72
A
ARG
73
n
74
ARG
73
A
TYR
74
n
75
TYR
74
A
PRO
75
n
76
PRO
75
A
ASP
76
n
77
ASP
76
A
HIS
77
n
78
HIS
77
A
MSE
78
n
79
MSE
78
A
LYS
79
n
80
LYS
79
A
GLN
80
n
81
GLN
80
A
HIS
81
n
82
HIS
81
A
ASP
82
n
83
ASP
82
A
PHE
83
n
84
PHE
83
A
PHE
84
n
85
PHE
84
A
LYS
85
n
86
LYS
85
A
SER
86
n
87
SER
86
A
ALA
87
n
88
ALA
87
A
MSE
88
n
89
MSE
88
A
PRO
89
n
90
PRO
89
A
GLU
90
n
91
GLU
90
A
GLY
91
n
92
GLY
91
A
TYR
92
n
93
TYR
92
A
VAL
93
n
94
VAL
93
A
GLN
94
n
95
GLN
94
A
GLU
95
n
96
GLU
95
A
ARG
96
n
97
ARG
96
A
THR
97
n
98
THR
97
A
ILE
98
n
99
ILE
98
A
SER
99
n
100
SER
99
A
PHE
100
n
101
PHE
100
A
LYS
101
n
102
LYS
101
A
ASP
102
n
103
ASP
102
A
ASP
103
n
104
ASP
103
A
GLY
104
n
105
GLY
104
A
ASN
105
n
106
ASN
105
A
TYR
106
n
107
TYR
106
A
LYS
107
n
108
LYS
107
A
THR
108
n
109
THR
108
A
ARG
109
n
110
ARG
109
A
ALA
110
n
111
ALA
110
A
GLU
111
n
112
GLU
111
A
VAL
112
n
113
VAL
112
A
LYS
113
n
114
LYS
113
A
PHE
114
n
115
PHE
114
A
GLU
115
n
116
GLU
115
A
GLY
116
n
117
GLY
116
A
ASP
117
n
118
ASP
117
A
THR
118
n
119
THR
118
A
LEU
119
n
120
LEU
119
A
VAL
120
n
121
VAL
120
A
ASN
121
n
122
ASN
121
A
ARG
122
n
123
ARG
122
A
ILE
123
n
124
ILE
123
A
GLU
124
n
125
GLU
124
A
LEU
125
n
126
LEU
125
A
LYS
126
n
127
LYS
126
A
GLY
127
n
128
GLY
127
A
ILE
128
n
129
ILE
128
A
ASP
129
n
130
ASP
129
A
PHE
130
n
131
PHE
130
A
LYS
131
n
132
LYS
131
A
GLU
132
n
133
GLU
132
A
ASP
133
n
134
ASP
133
A
GLY
134
n
135
GLY
134
A
ASN
135
n
136
ASN
135
A
ILE
136
n
137
ILE
136
A
LEU
137
n
138
LEU
137
A
GLY
138
n
139
GLY
138
A
HIS
139
n
140
HIS
139
A
LYS
140
n
141
LYS
140
A
LEU
141
n
142
LEU
141
A
GLU
142
n
143
GLU
142
A
TYR
143
n
144
TYR
143
A
ASN
144
n
145
ASN
144
A
TYR
145
n
146
TYR
145
A
ASN
146
n
147
ASN
146
A
SER
147
n
148
SER
147
A
HIS
148
n
149
HIS
148
A
ASN
149
n
150
ASN
149
A
VAL
150
n
151
VAL
150
A
TYR
151
n
152
TYR
151
A
ILE
152
n
153
ILE
152
A
THR
153
n
154
THR
153
A
ALA
154
n
155
ALA
154
A
ASP
155
n
156
ASP
155
A
LYS
156
n
157
LYS
156
A
GLN
157
n
158
GLN
157
A
LYS
158
n
159
LYS
158
A
ASN
159
n
160
ASN
159
A
GLY
160
n
161
GLY
160
A
ILE
161
n
162
ILE
161
A
LYS
162
n
163
LYS
162
A
ALA
163
n
164
ALA
163
A
ASN
164
n
165
ASN
164
A
PHE
165
n
166
PHE
165
A
LYS
166
n
167
LYS
166
A
ILE
167
n
168
ILE
167
A
ARG
168
n
169
ARG
168
A
HIS
169
n
170
HIS
169
A
ASN
170
n
171
ASN
170
A
ILE
171
n
172
ILE
171
A
GLU
172
n
173
GLU
172
A
ASP
173
n
174
ASP
173
A
GLY
174
n
175
GLY
174
A
SER
175
n
176
SER
175
A
VAL
176
n
177
VAL
176
A
GLN
177
n
178
GLN
177
A
LEU
178
n
179
LEU
178
A
ALA
179
n
180
ALA
179
A
ASP
180
n
181
ASP
180
A
HIS
181
n
182
HIS
181
A
TYR
182
n
183
TYR
182
A
GLN
183
n
184
GLN
183
A
GLN
184
n
185
GLN
184
A
ASN
185
n
186
ASN
185
A
THR
186
n
187
THR
186
A
PRO
187
n
188
PRO
187
A
ILE
188
n
189
ILE
188
A
GLY
189
n
190
GLY
189
A
ASP
190
n
191
ASP
190
A
GLY
191
n
192
GLY
191
A
PRO
192
n
193
PRO
192
A
VAL
193
n
194
VAL
193
A
LEU
194
n
195
LEU
194
A
LEU
195
n
196
LEU
195
A
PRO
196
n
197
PRO
196
A
ASP
197
n
198
ASP
197
A
ASN
198
n
199
ASN
198
A
HIS
199
n
200
HIS
199
A
TYR
200
n
201
TYR
200
A
LEU
201
n
202
LEU
201
A
SER
202
n
203
SER
202
A
THR
203
n
204
THR
203
A
GLN
204
n
205
GLN
204
A
SER
205
n
206
SER
205
A
ALA
206
n
207
ALA
206
A
LEU
207
n
208
LEU
207
A
SER
208
n
209
SER
208
A
LYS
209
n
210
LYS
209
A
ASP
210
n
211
ASP
210
A
PRO
211
n
212
PRO
211
A
ASN
212
n
213
ASN
212
A
GLU
213
n
214
GLU
213
A
LYS
214
n
215
LYS
214
A
ARG
215
n
216
ARG
215
A
ASP
216
n
217
ASP
216
A
HIS
217
n
218
HIS
217
A
MSE
218
n
219
MSE
218
A
VAL
219
n
220
VAL
219
A
LEU
220
n
221
LEU
220
A
LEU
221
n
222
LEU
221
A
GLU
222
n
223
GLU
222
A
PHE
223
n
224
PHE
223
A
VAL
224
n
225
VAL
224
A
THR
225
n
226
THR
225
A
ALA
226
n
227
ALA
226
A
ALA
227
n
228
ALA
227
A
GLY
228
n
229
GLY
228
A
ILE
229
n
230
ILE
229
A
THR
230
n
231
THR
230
A
HIS
231
n
232
HIS
231
A
n
233
232
A
n
234
233
A
n
235
234
A
n
236
235
A
n
237
236
A
n
238
237
A
n
239
238
A
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
197
A
OD1
ASP
198
1_555
A
CA
239
B
CA
CA
1_555
A
ASP
197
A
OD2
ASP
198
1_555
50.3
A
ASP
197
A
OD1
ASP
198
1_555
A
CA
239
B
CA
CA
1_555
A
HOH
377
C
O
HOH
3_544
128.5
A
ASP
197
A
OD2
ASP
198
1_555
A
CA
239
B
CA
CA
1_555
A
HOH
377
C
O
HOH
3_544
81.9
A
ASP
197
A
OD1
ASP
198
1_555
A
CA
239
B
CA
CA
1_555
A
HOH
398
C
O
HOH
3_544
153.8
A
ASP
197
A
OD2
ASP
198
1_555
A
CA
239
B
CA
CA
1_555
A
HOH
398
C
O
HOH
3_544
155.7
A
HOH
377
C
O
HOH
3_544
A
CA
239
B
CA
CA
1_555
A
HOH
398
C
O
HOH
3_544
76.1
A
ASP
197
A
OD1
ASP
198
1_555
A
CA
239
B
CA
CA
1_555
A
HOH
493
C
O
HOH
3_544
107.4
A
ASP
197
A
OD2
ASP
198
1_555
A
CA
239
B
CA
CA
1_555
A
HOH
493
C
O
HOH
3_544
84.2
A
HOH
377
C
O
HOH
3_544
A
CA
239
B
CA
CA
1_555
A
HOH
493
C
O
HOH
3_544
81.8
A
HOH
398
C
O
HOH
3_544
A
CA
239
B
CA
CA
1_555
A
HOH
493
C
O
HOH
3_544
82.8
A
ASP
197
A
OD1
ASP
198
1_555
A
CA
239
B
CA
CA
1_555
A
HOH
577
C
O
HOH
2_454
51.2
A
ASP
197
A
OD2
ASP
198
1_555
A
CA
239
B
CA
CA
1_555
A
HOH
577
C
O
HOH
2_454
97.9
A
HOH
377
C
O
HOH
3_544
A
CA
239
B
CA
CA
1_555
A
HOH
577
C
O
HOH
2_454
179.4
A
HOH
398
C
O
HOH
3_544
A
CA
239
B
CA
CA
1_555
A
HOH
577
C
O
HOH
2_454
104.2
A
HOH
493
C
O
HOH
3_544
A
CA
239
B
CA
CA
1_555
A
HOH
577
C
O
HOH
2_454
98.7
A
ASP
197
A
OD1
ASP
198
1_555
A
CA
239
B
CA
CA
1_555
A
HOH
578
C
O
HOH
1_555
85.8
A
ASP
197
A
OD2
ASP
198
1_555
A
CA
239
B
CA
CA
1_555
A
HOH
578
C
O
HOH
1_555
90.8
A
HOH
377
C
O
HOH
3_544
A
CA
239
B
CA
CA
1_555
A
HOH
578
C
O
HOH
1_555
75.4
A
HOH
398
C
O
HOH
3_544
A
CA
239
B
CA
CA
1_555
A
HOH
578
C
O
HOH
1_555
93.4
A
HOH
493
C
O
HOH
3_544
A
CA
239
B
CA
CA
1_555
A
HOH
578
C
O
HOH
1_555
157.2
A
HOH
577
C
O
HOH
2_454
A
CA
239
B
CA
CA
1_555
A
HOH
578
C
O
HOH
1_555
104.0
A
ASP
197
A
OD1
ASP
198
1_555
A
CA
239
B
CA
CA
1_555
A
HOH
580
C
O
HOH
1_555
70.3
A
ASP
197
A
OD2
ASP
198
1_555
A
CA
239
B
CA
CA
1_555
A
HOH
580
C
O
HOH
1_555
115.4
A
HOH
377
C
O
HOH
3_544
A
CA
239
B
CA
CA
1_555
A
HOH
580
C
O
HOH
1_555
129.9
A
HOH
398
C
O
HOH
3_544
A
CA
239
B
CA
CA
1_555
A
HOH
580
C
O
HOH
1_555
86.9
A
HOH
493
C
O
HOH
3_544
A
CA
239
B
CA
CA
1_555
A
HOH
580
C
O
HOH
1_555
142.8
A
HOH
577
C
O
HOH
2_454
A
CA
239
B
CA
CA
1_555
A
HOH
580
C
O
HOH
1_555
49.6
A
HOH
578
C
O
HOH
1_555
A
CA
239
B
CA
CA
1_555
A
HOH
580
C
O
HOH
1_555
58.7
A
ASP
197
A
OD1
ASP
198
1_555
A
CA
239
B
CA
CA
1_555
A
HOH
589
C
O
HOH
2_454
74.5
A
ASP
197
A
OD2
ASP
198
1_555
A
CA
239
B
CA
CA
1_555
A
HOH
589
C
O
HOH
2_454
87.2
A
HOH
377
C
O
HOH
3_544
A
CA
239
B
CA
CA
1_555
A
HOH
589
C
O
HOH
2_454
127.7
A
HOH
398
C
O
HOH
3_544
A
CA
239
B
CA
CA
1_555
A
HOH
589
C
O
HOH
2_454
98.2
A
HOH
493
C
O
HOH
3_544
A
CA
239
B
CA
CA
1_555
A
HOH
589
C
O
HOH
2_454
46.1
A
HOH
577
C
O
HOH
2_454
A
CA
239
B
CA
CA
1_555
A
HOH
589
C
O
HOH
2_454
52.8
A
HOH
578
C
O
HOH
1_555
A
CA
239
B
CA
CA
1_555
A
HOH
589
C
O
HOH
2_454
156.0
A
HOH
580
C
O
HOH
1_555
A
CA
239
B
CA
CA
1_555
A
HOH
589
C
O
HOH
2_454
100.9
A
MSE
1
SELENOMETHIONINE
A
MSE
4
MET
A
CRO
65
A
CRO
68
GLY
A
CRO
65
A
CRO
68
TYR
A
CRO
65
A
CRO
68
GLY
A
MSE
78
SELENOMETHIONINE
A
MSE
79
MET
A
MSE
88
SELENOMETHIONINE
A
MSE
89
MET
A
MSE
218
SELENOMETHIONINE
A
MSE
219
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
16
A
N
VAL
19
A
O
GLY
31
A
O
GLY
34
A
N
ASP
36
A
N
ASP
39
A
O
LYS
41
A
O
LYS
44
A
N
PHE
46
A
N
PHE
49
A
O
MSE
218
A
O
MSE
219
A
O
THR
225
A
O
THR
226
A
N
SER
202
A
N
SER
203
A
O
LEU
201
A
O
LEU
202
A
N
VAL
150
A
N
VAL
151
A
N
ASP
155
A
N
ASP
156
A
O
GLY
160
A
O
GLY
161
A
N
PHE
165
A
N
PHE
166
A
O
HIS
181
A
O
HIS
182
A
O
THR
186
A
O
THR
187
A
N
VAL
93
A
N
VAL
94
A
N
ILE
98
A
N
ILE
99
A
O
TYR
106
A
O
TYR
107
A
N
LYS
107
A
N
LYS
108
A
O
LYS
126
A
O
LYS
127
A
O
GLY
127
A
O
GLY
128
A
N
ASP
21
A
N
ASP
24
1
A
GLY
232
A
GLY
233
1
Y
1
A
MSE
233
A
MSE
234
1
Y
1
A
ASP
234
A
ASP
235
1
Y
1
A
GLU
235
A
GLU
236
1
Y
1
A
LEU
236
A
LEU
237
1
Y
1
A
TYR
237
A
TYR
238
1
Y
1
A
LYS
238
A
LYS
239
1
Y
1
A
A
OD2
O
ASP
HOH
102
585
2.07
A
1
A
A
O
O
HOH
HOH
577
580
2.03
1_555
2_455
1
A
A
OD1
O
ASP
HOH
197
577
2.17
1_555
2_454
1
A
ASP
103
-153.93
-159.10
1
A
ILE
136
-84.94
-71.24
12.341
0.312
0.000
0.000
-0.420
0.000
0.108
0.952
0.921
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.220
0.168
0.171
1.700
46.424
1276
25028
5.098
98.980
0.190
0.141
2.492
0.082
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.116
0.119
0.800
0.800
1.200
PDB entry 2G6E
MAXIMUM LIKELIHOOD
MASK BULK SOLVENT
1.700
46.424
377
2293
1
0
1915
0.012
0.022
1969
1.548
1.967
2681
6.337
5.000
255
37.293
25.426
94
12.058
15.000
350
11.385
15.000
6
0.096
0.200
293
0.006
0.020
1511
0.235
0.200
867
0.303
0.200
1314
0.158
0.200
296
0.193
0.200
51
0.230
0.200
40
0.194
0.200
1
0.866
1.500
1224
1.285
2.000
1937
2.291
3.000
845
3.520
4.500
733
0.323
0.246
1.744
81
1701
1831
20
97.324
0.301
0.226
1.792
93
1626
1793
20
95.873
0.273
0.215
1.844
75
1603
1744
20
96.216
0.241
0.200
1.900
65
1584
1694
20
97.344
0.204
0.183
1.963
83
1540
1639
20
99.024
0.199
0.163
2.031
82
1497
1579
20
100.000
0.260
0.161
2.108
94
1449
1543
20
100.000
0.189
0.165
2.194
73
1425
1498
20
100.000
0.189
0.161
2.291
68
1357
1425
20
100.000
0.220
0.171
2.403
79
1291
1370
20
100.000
0.206
0.165
2.532
75
1227
1302
20
100.000
0.204
0.165
2.685
82
1165
1247
20
100.000
0.292
0.161
2.870
49
1110
1159
20
100.000
0.210
0.153
3.099
61
1038
1099
20
100.000
0.216
0.144
3.393
52
945
997
20
100.000
0.179
0.133
3.791
42
880
926
20
99.568
0.161
0.131
4.373
37
785
822
20
100.000
0.175
0.134
5.344
41
669
710
20
100.000
0.296
0.204
7.508
29
532
562
20
99.822
0.240
0.203
46.424
15
328
346
20
99.133
1.7
70.2
2QU1
25086
0.0976
1
28.27
29.45
99.0
0.6834
1.7
1.75
2.93
2000
5.42
96.8
0.6431
1.75
1.8
3.67
1773
7.06
96.0
0.5706
1.8
1.85
4.54
1604
8.65
96.5
0.4812
1.85
1.9
5.62
1441
10.56
97.4
0.4122
1.9
1.95
6.88
1322
13.05
98.9
0.3241
1.95
2.05
9.31
2310
17.26
100.0
0.2664
2.05
2.15
12.05
1908
20.67
100.0
0.2253
2.15
2.25
15.31
1578
24.21
100.0
0.1961
2.25
2.35
18.9
1331
28.57
100.0
0.1624
2.35
2.5
23.73
1621
33.4
100.0
0.1374
2.5
2.65
30.4
1275
39.33
100.0
0.117
2.65
2.9
39.18
1591
48.09
100.0
0.0887
2.9
3.2
56.24
1324
56.62
100.0
0.0762
3.2
3.7
74.82
1373
60.91
100.0
0.0545
3.7
4.75
100.39
1347
66.14
100.0
0.0484
4.75
70.2
98.21
1288
70.28
99.8
data scaling
http://www.bruker-axs.de/index.html
SAINT
package
phasing
A. Vagin
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
other
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
5.2.0005
data extraction
PDB
sw-help@rcsb.rutgers.edu
July 2, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.000
data collection
PROTEUM PLUS
PLUS
data reduction
SAINT
data scaling
SADABS
Crystal Structure of a Cyclized GFP Variant
1
N
N
2
N
N
3
N
N
A
LYS
3
A
LYS
6
HELX_P
A
THR
9
A
THR
12
5
1
7
A
ALA
37
A
ALA
40
HELX_P
A
TYR
39
A
TYR
42
5
2
3
A
PRO
56
A
PRO
59
HELX_P
A
VAL
61
A
VAL
64
5
3
6
A
VAL
68
A
VAL
69
HELX_P
A
SER
72
A
SER
73
5
4
5
A
PRO
75
A
PRO
76
HELX_P
A
HIS
81
A
HIS
82
5
5
7
A
ASP
82
A
ASP
83
HELX_P
A
ALA
87
A
ALA
88
1
6
6
covale
1.337
both
A
ALA
0
A
C
ALA
3
1_555
A
MSE
1
A
N
MSE
4
1_555
covale
1.334
both
A
MSE
1
A
C
MSE
4
1_555
A
SER
2
A
N
SER
5
1_555
covale
1.582
both
A
LEU
64
A
C
LEU
67
1_555
A
CRO
65
A
N1
CRO
68
1_555
covale
1.453
both
A
CRO
65
A
C3
CRO
68
1_555
A
VAL
68
A
N
VAL
69
1_555
covale
1.331
both
A
HIS
77
A
C
HIS
78
1_555
A
MSE
78
A
N
MSE
79
1_555
covale
1.328
both
A
MSE
78
A
C
MSE
79
1_555
A
LYS
79
A
N
LYS
80
1_555
covale
1.328
both
A
ALA
87
A
C
ALA
88
1_555
A
MSE
88
A
N
MSE
89
1_555
covale
1.356
both
A
MSE
88
A
C
MSE
89
1_555
A
PRO
89
A
N
PRO
90
1_555
covale
1.335
both
A
HIS
217
A
C
HIS
218
1_555
A
MSE
218
A
N
MSE
219
1_555
covale
1.330
both
A
MSE
218
A
C
MSE
219
1_555
A
VAL
219
A
N
VAL
220
1_555
metalc
2.699
A
ASP
197
A
OD1
ASP
198
1_555
A
CA
239
B
CA
CA
1_555
metalc
2.422
A
ASP
197
A
OD2
ASP
198
1_555
A
CA
239
B
CA
CA
1_555
metalc
2.471
A
CA
239
B
CA
CA
1_555
A
HOH
377
C
O
HOH
3_544
metalc
2.498
A
CA
239
B
CA
CA
1_555
A
HOH
398
C
O
HOH
3_544
metalc
2.426
A
CA
239
B
CA
CA
1_555
A
HOH
493
C
O
HOH
3_544
metalc
2.227
A
CA
239
B
CA
CA
1_555
A
HOH
577
C
O
HOH
2_454
metalc
2.600
A
CA
239
B
CA
CA
1_555
A
HOH
578
C
O
HOH
1_555
metalc
2.552
A
CA
239
B
CA
CA
1_555
A
HOH
580
C
O
HOH
1_555
metalc
3.179
A
CA
239
B
CA
CA
1_555
A
HOH
589
C
O
HOH
2_454
LUMINESCENT PROTEIN
Protein Expression Testing, Pipeline Development, Protein Structure Initiative, PSI, Center for Eukaryotic Structural Genomics, CESG, Chromophore, Luminescence, Photoprotein, LUMINESCENT PROTEIN
A
MSE
88
A
MSE
89
1
A
PRO
89
A
PRO
90
2.57
GFP_AEQVI
UNP
1
1
P42212
MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKQ
HDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNG
IKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITHGMDELYK
1
238
2QU1
1
238
P42212
A
1
4
239
1
expression tag
ALA
-2
2QU1
A
P42212
UNP
1
1
expression tag
ILE
-1
2QU1
A
P42212
UNP
2
1
expression tag
ALA
0
2QU1
A
P42212
UNP
3
1
PHE
engineered mutation
LEU
64
2QU1
A
P42212
UNP
64
67
1
SER
chromophore
CRO
65
2QU1
A
P42212
UNP
65
68
1
PHE
engineered mutation
SER
99
2QU1
A
P42212
UNP
99
100
1
MET
engineered mutation
THR
153
2QU1
A
P42212
UNP
153
154
1
VAL
engineered mutation
ALA
163
2QU1
A
P42212
UNP
163
164
12
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
VAL
12
A
VAL
15
A
VAL
22
A
VAL
25
A
HIS
25
A
HIS
28
A
ASP
36
A
ASP
39
A
LYS
41
A
LYS
44
A
CYS
48
A
CYS
51
A
HIS
217
A
HIS
218
A
ALA
227
A
ALA
228
A
HIS
199
A
HIS
200
A
SER
208
A
SER
209
A
ASN
149
A
ASN
150
A
ASP
155
A
ASP
156
A
GLY
160
A
GLY
161
A
ASN
170
A
ASN
171
A
VAL
176
A
VAL
177
A
PRO
187
A
PRO
188
A
TYR
92
A
TYR
93
A
PHE
100
A
PHE
101
A
ASN
105
A
ASN
106
A
GLU
115
A
GLU
116
A
THR
118
A
THR
119
A
ILE
128
A
ILE
129
A
VAL
12
A
VAL
15
A
VAL
22
A
VAL
25
BINDING SITE FOR RESIDUE CA A 239
A
CA
239
Software
7
A
ASP
197
A
ASP
198
7
1_555
A
HOH
377
C
HOH
7
3_544
A
HOH
398
C
HOH
7
3_544
A
HOH
493
C
HOH
7
3_544
A
HOH
577
C
HOH
7
2_454
A
HOH
578
C
HOH
7
1_555
A
HOH
580
C
HOH
7
1_555
19
P 21 21 21