0.023368
0.000224
0.002040
0.000000
0.023081
0.001035
0.000000
0.000000
0.017188
0.00000
0.00000
0.00000
Gardberg, A.S.
Dealwis, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
92.510
94.960
90.550
42.793
43.327
58.456
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C5 H10 N2 O3 S
178.209
n
S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE
CYSTEINE-S-ACETAMIDE
L-peptide linking
US
Proc.Natl.Acad.Sci.Usa
PNASA6
0040
0027-8424
104
15659
15664
10.1073/pnas.0705888104
17895381
Molecular basis for passive immunotherapy of Alzheimer's disease
2007
100
1
CCD
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
24203.863
IgG2a Fab fragment light chain
light chain
1
nat
polymer
24020.068
IgG2a Fab fragment heavy chain, Fd portion
Fd portion of heavy chain
1
nat
polymer
977.975
Amyloid beta peptide fragment
octapeptide
1
syn
polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
63
nat
water
Amyloid beta A4 protein, fragment
no
yes
DVLMTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYYCFQGSHVPLTFGAGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE(YCM)
DVLMTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYYCFQGSHVPLTFGAGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
L
polypeptide(L)
no
no
QVTLKESGPGILKPSQTLSLTCSLSGFSLRTSGMGVGWIRQPSGKGLEWLAHIWWDDDKNYNPSLKSQLTISKDTSRNQV
FLKITSVDTADTATYYCVRRAHNVVLGDWFAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPV
TLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
QVTLKESGPGILKPSQTLSLTCSLSGFSLRTSGMGVGWIRQPSGKGLEWLAHIWWDDDKNYNPSLKSQLTISKDTSRNQV
FLKITSVDTADTATYYCVRRAHNVVLGDWFAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPV
TLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
H
polypeptide(L)
no
no
DAEFRHDS
DAEFRHDS
Q
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Hybridoma
Mus
sample
10090
Mus musculus
house mouse
hybridoma
Mus
sample
10090
Mus musculus
1
2.19
43.87
VAPOR DIFFUSION
5.3
25% PEG-MME 5000, 0.1 M OAc, pH 5.3, VAPOR DIFFUSION, temperature 295K
295
software
repository
Initial release
Advisory
Version format compliance
Refinement description
1
0
2007-10-16
1
1
2011-07-13
1
2
2017-10-25
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
SEQUENCE
RESIDUES L GLU 212 AND L YCM 213 HAVE VERY LONG
DISTANCE OF C-N BOND, 1.87, AND MAY NOT BE LINKED.
N
RCSB
Y
RCSB
2007-08-21
REL
REL
NA
SODIUM ION
HOH
water
NA
1
4
NA
NA
214
L
HOH
1
5
HOH
HOH
215
L
HOH
4
5
HOH
HOH
216
L
HOH
7
5
HOH
HOH
217
L
HOH
8
5
HOH
HOH
218
L
HOH
9
5
HOH
HOH
219
L
HOH
12
5
HOH
HOH
220
L
HOH
15
5
HOH
HOH
221
L
HOH
16
5
HOH
HOH
222
L
HOH
18
5
HOH
HOH
223
L
HOH
19
5
HOH
HOH
224
L
HOH
20
5
HOH
HOH
225
L
HOH
21
5
HOH
HOH
226
L
HOH
23
5
HOH
HOH
227
L
HOH
28
5
HOH
HOH
228
L
HOH
29
5
HOH
HOH
229
L
HOH
30
5
HOH
HOH
230
L
HOH
32
5
HOH
HOH
231
L
HOH
34
5
HOH
HOH
232
L
HOH
35
5
HOH
HOH
233
L
HOH
39
5
HOH
HOH
234
L
HOH
41
5
HOH
HOH
235
L
HOH
45
5
HOH
HOH
236
L
HOH
46
5
HOH
HOH
237
L
HOH
49
5
HOH
HOH
238
L
HOH
50
5
HOH
HOH
239
L
HOH
51
5
HOH
HOH
240
L
HOH
53
5
HOH
HOH
241
L
HOH
54
5
HOH
HOH
242
L
HOH
58
5
HOH
HOH
243
L
HOH
59
5
HOH
HOH
244
L
HOH
60
5
HOH
HOH
245
L
HOH
2
5
HOH
HOH
214
H
HOH
3
5
HOH
HOH
215
H
HOH
5
5
HOH
HOH
216
H
HOH
6
5
HOH
HOH
217
H
HOH
10
5
HOH
HOH
218
H
HOH
11
5
HOH
HOH
219
H
HOH
13
5
HOH
HOH
220
H
HOH
14
5
HOH
HOH
221
H
HOH
17
5
HOH
HOH
222
H
HOH
22
5
HOH
HOH
223
H
HOH
24
5
HOH
HOH
224
H
HOH
25
5
HOH
HOH
225
H
HOH
26
5
HOH
HOH
226
H
HOH
27
5
HOH
HOH
227
H
HOH
31
5
HOH
HOH
228
H
HOH
33
5
HOH
HOH
229
H
HOH
36
5
HOH
HOH
230
H
HOH
37
5
HOH
HOH
231
H
HOH
38
5
HOH
HOH
232
H
HOH
40
5
HOH
HOH
233
H
HOH
42
5
HOH
HOH
234
H
HOH
43
5
HOH
HOH
235
H
HOH
44
5
HOH
HOH
236
H
HOH
47
5
HOH
HOH
237
H
HOH
48
5
HOH
HOH
238
H
HOH
52
5
HOH
HOH
239
H
HOH
55
5
HOH
HOH
240
H
HOH
56
5
HOH
HOH
241
H
HOH
57
5
HOH
HOH
242
H
HOH
62
5
HOH
HOH
243
H
HOH
63
5
HOH
HOH
244
H
HOH
61
5
HOH
HOH
61
Q
ASP
1
n
1
ASP
1
L
VAL
2
n
2
VAL
2
L
LEU
3
n
3
LEU
3
L
MET
4
n
4
MET
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
THR
7
n
7
THR
7
L
PRO
8
n
8
PRO
8
L
LEU
9
n
9
LEU
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
PRO
12
n
12
PRO
12
L
VAL
13
n
13
VAL
13
L
SER
14
n
14
SER
14
L
LEU
15
n
15
LEU
15
L
GLY
16
n
16
GLY
16
L
ASP
17
n
17
ASP
17
L
GLN
18
n
18
GLN
18
L
ALA
19
n
19
ALA
19
L
SER
20
n
20
SER
20
L
ILE
21
n
21
ILE
21
L
SER
22
n
22
SER
22
L
CYS
23
n
23
CYS
23
L
ARG
24
n
24
ARG
24
L
SER
25
n
25
SER
25
L
SER
26
n
26
SER
26
L
GLN
27
n
27
GLN
27
L
SER
27
n
28
A
SER
27
L
ILE
27
n
29
B
ILE
27
L
VAL
27
n
30
C
VAL
27
L
HIS
27
n
31
D
HIS
27
L
SER
27
n
32
E
SER
27
L
ASN
28
n
33
ASN
28
L
GLY
29
n
34
GLY
29
L
ASN
30
n
35
ASN
30
L
THR
31
n
36
THR
31
L
TYR
32
n
37
TYR
32
L
LEU
33
n
38
LEU
33
L
GLU
34
n
39
GLU
34
L
TRP
35
n
40
TRP
35
L
TYR
36
n
41
TYR
36
L
LEU
37
n
42
LEU
37
L
GLN
38
n
43
GLN
38
L
LYS
39
n
44
LYS
39
L
PRO
40
n
45
PRO
40
L
GLY
41
n
46
GLY
41
L
GLN
42
n
47
GLN
42
L
SER
43
n
48
SER
43
L
PRO
44
n
49
PRO
44
L
LYS
45
n
50
LYS
45
L
LEU
46
n
51
LEU
46
L
LEU
47
n
52
LEU
47
L
ILE
48
n
53
ILE
48
L
TYR
49
n
54
TYR
49
L
LYS
50
n
55
LYS
50
L
VAL
51
n
56
VAL
51
L
SER
52
n
57
SER
52
L
ASN
53
n
58
ASN
53
L
ARG
54
n
59
ARG
54
L
PHE
55
n
60
PHE
55
L
SER
56
n
61
SER
56
L
GLY
57
n
62
GLY
57
L
VAL
58
n
63
VAL
58
L
PRO
59
n
64
PRO
59
L
ASP
60
n
65
ASP
60
L
ARG
61
n
66
ARG
61
L
PHE
62
n
67
PHE
62
L
SER
63
n
68
SER
63
L
GLY
64
n
69
GLY
64
L
SER
65
n
70
SER
65
L
GLY
66
n
71
GLY
66
L
SER
67
n
72
SER
67
L
GLY
68
n
73
GLY
68
L
THR
69
n
74
THR
69
L
ASP
70
n
75
ASP
70
L
PHE
71
n
76
PHE
71
L
THR
72
n
77
THR
72
L
LEU
73
n
78
LEU
73
L
LYS
74
n
79
LYS
74
L
ILE
75
n
80
ILE
75
L
SER
76
n
81
SER
76
L
ARG
77
n
82
ARG
77
L
VAL
78
n
83
VAL
78
L
GLU
79
n
84
GLU
79
L
ALA
80
n
85
ALA
80
L
GLU
81
n
86
GLU
81
L
ASP
82
n
87
ASP
82
L
LEU
83
n
88
LEU
83
L
GLY
84
n
89
GLY
84
L
VAL
85
n
90
VAL
85
L
TYR
86
n
91
TYR
86
L
TYR
87
n
92
TYR
87
L
CYS
88
n
93
CYS
88
L
PHE
89
n
94
PHE
89
L
GLN
90
n
95
GLN
90
L
GLY
91
n
96
GLY
91
L
SER
92
n
97
SER
92
L
HIS
93
n
98
HIS
93
L
VAL
94
n
99
VAL
94
L
PRO
95
n
100
PRO
95
L
LEU
96
n
101
LEU
96
L
THR
97
n
102
THR
97
L
PHE
98
n
103
PHE
98
L
GLY
99
n
104
GLY
99
L
ALA
100
n
105
ALA
100
L
GLY
101
n
106
GLY
101
L
THR
102
n
107
THR
102
L
LYS
103
n
108
LYS
103
L
LEU
104
n
109
LEU
104
L
GLU
105
n
110
GLU
105
L
ILE
106
n
111
ILE
106
L
LYS
106
n
112
A
LYS
106
L
ARG
107
n
113
ARG
107
L
ALA
108
n
114
ALA
108
L
ASP
109
n
115
ASP
109
L
ALA
110
n
116
ALA
110
L
ALA
111
n
117
ALA
111
L
PRO
112
n
118
PRO
112
L
THR
113
n
119
THR
113
L
VAL
114
n
120
VAL
114
L
SER
115
n
121
SER
115
L
ILE
116
n
122
ILE
116
L
PHE
117
n
123
PHE
117
L
PRO
118
n
124
PRO
118
L
PRO
119
n
125
PRO
119
L
SER
120
n
126
SER
120
L
SER
121
n
127
SER
121
L
GLU
122
n
128
GLU
122
L
GLN
123
n
129
GLN
123
L
LEU
124
n
130
LEU
124
L
THR
125
n
131
THR
125
L
SER
126
n
132
SER
126
L
GLY
127
n
133
GLY
127
L
GLY
128
n
134
GLY
128
L
ALA
129
n
135
ALA
129
L
SER
130
n
136
SER
130
L
VAL
131
n
137
VAL
131
L
VAL
132
n
138
VAL
132
L
CYS
133
n
139
CYS
133
L
PHE
134
n
140
PHE
134
L
LEU
135
n
141
LEU
135
L
ASN
136
n
142
ASN
136
L
ASN
137
n
143
ASN
137
L
PHE
138
n
144
PHE
138
L
TYR
139
n
145
TYR
139
L
PRO
140
n
146
PRO
140
L
LYS
141
n
147
LYS
141
L
ASP
142
n
148
ASP
142
L
ILE
143
n
149
ILE
143
L
ASN
144
n
150
ASN
144
L
VAL
145
n
151
VAL
145
L
LYS
146
n
152
LYS
146
L
TRP
147
n
153
TRP
147
L
LYS
148
n
154
LYS
148
L
ILE
149
n
155
ILE
149
L
ASP
150
n
156
ASP
150
L
GLY
151
n
157
GLY
151
L
SER
152
n
158
SER
152
L
GLU
153
n
159
GLU
153
L
ARG
154
n
160
ARG
154
L
GLN
155
n
161
GLN
155
L
ASN
156
n
162
ASN
156
L
GLY
157
n
163
GLY
157
L
VAL
158
n
164
VAL
158
L
LEU
159
n
165
LEU
159
L
ASN
160
n
166
ASN
160
L
SER
161
n
167
SER
161
L
TRP
162
n
168
TRP
162
L
THR
163
n
169
THR
163
L
ASP
164
n
170
ASP
164
L
GLN
165
n
171
GLN
165
L
ASP
166
n
172
ASP
166
L
SER
167
n
173
SER
167
L
LYS
168
n
174
LYS
168
L
ASP
169
n
175
ASP
169
L
SER
170
n
176
SER
170
L
THR
171
n
177
THR
171
L
TYR
172
n
178
TYR
172
L
SER
173
n
179
SER
173
L
MET
174
n
180
MET
174
L
SER
175
n
181
SER
175
L
SER
176
n
182
SER
176
L
THR
177
n
183
THR
177
L
LEU
178
n
184
LEU
178
L
THR
179
n
185
THR
179
L
LEU
180
n
186
LEU
180
L
THR
181
n
187
THR
181
L
LYS
182
n
188
LYS
182
L
ASP
183
n
189
ASP
183
L
GLU
184
n
190
GLU
184
L
TYR
185
n
191
TYR
185
L
GLU
186
n
192
GLU
186
L
ARG
187
n
193
ARG
187
L
HIS
188
n
194
HIS
188
L
ASN
189
n
195
ASN
189
L
SER
190
n
196
SER
190
L
TYR
191
n
197
TYR
191
L
THR
192
n
198
THR
192
L
CYS
193
n
199
CYS
193
L
GLU
194
n
200
GLU
194
L
ALA
195
n
201
ALA
195
L
THR
196
n
202
THR
196
L
HIS
197
n
203
HIS
197
L
LYS
198
n
204
LYS
198
L
THR
199
n
205
THR
199
L
SER
200
n
206
SER
200
L
THR
201
n
207
THR
201
L
SER
202
n
208
SER
202
L
PRO
203
n
209
PRO
203
L
ILE
204
n
210
ILE
204
L
VAL
205
n
211
VAL
205
L
LYS
206
n
212
LYS
206
L
SER
207
n
213
SER
207
L
PHE
208
n
214
PHE
208
L
ASN
209
n
215
ASN
209
L
ARG
210
n
216
ARG
210
L
ASN
211
n
217
ASN
211
L
GLU
212
n
218
GLU
212
L
YCM
213
n
219
YCM
213
L
GLN
1
n
1
GLN
1
H
VAL
2
n
2
VAL
2
H
THR
3
n
3
THR
3
H
LEU
4
n
4
LEU
4
H
LYS
5
n
5
LYS
5
H
GLU
6
n
6
GLU
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
PRO
9
n
9
PRO
9
H
GLY
10
n
10
GLY
10
H
ILE
11
n
11
ILE
11
H
LEU
12
n
12
LEU
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
SER
15
n
15
SER
15
H
GLN
16
n
16
GLN
16
H
THR
17
n
17
THR
17
H
LEU
18
n
18
LEU
18
H
SER
19
n
19
SER
19
H
LEU
20
n
20
LEU
20
H
THR
21
n
21
THR
21
H
CYS
22
n
22
CYS
22
H
SER
23
n
23
SER
23
H
LEU
24
n
24
LEU
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
PHE
27
n
27
PHE
27
H
SER
28
n
28
SER
28
H
LEU
29
n
29
LEU
29
H
ARG
30
n
30
ARG
30
H
THR
31
n
31
THR
31
H
SER
32
n
32
SER
32
H
GLY
33
n
33
GLY
33
H
MET
34
n
34
MET
34
H
GLY
35
n
35
GLY
35
H
VAL
35
n
36
A
VAL
35
H
GLY
35
n
37
B
GLY
35
H
TRP
36
n
38
TRP
36
H
ILE
37
n
39
ILE
37
H
ARG
38
n
40
ARG
38
H
GLN
39
n
41
GLN
39
H
PRO
40
n
42
PRO
40
H
SER
41
n
43
SER
41
H
GLY
42
n
44
GLY
42
H
LYS
43
n
45
LYS
43
H
GLY
44
n
46
GLY
44
H
LEU
45
n
47
LEU
45
H
GLU
46
n
48
GLU
46
H
TRP
47
n
49
TRP
47
H
LEU
48
n
50
LEU
48
H
ALA
49
n
51
ALA
49
H
HIS
50
n
52
HIS
50
H
ILE
51
n
53
ILE
51
H
TRP
52
n
54
TRP
52
H
TRP
53
n
55
TRP
53
H
ASP
54
n
56
ASP
54
H
ASP
55
n
57
ASP
55
H
ASP
56
n
58
ASP
56
H
LYS
57
n
59
LYS
57
H
ASN
58
n
60
ASN
58
H
TYR
59
n
61
TYR
59
H
ASN
60
n
62
ASN
60
H
PRO
61
n
63
PRO
61
H
SER
62
n
64
SER
62
H
LEU
63
n
65
LEU
63
H
LYS
64
n
66
LYS
64
H
SER
65
n
67
SER
65
H
GLN
66
n
68
GLN
66
H
LEU
67
n
69
LEU
67
H
THR
68
n
70
THR
68
H
ILE
69
n
71
ILE
69
H
SER
70
n
72
SER
70
H
LYS
71
n
73
LYS
71
H
ASP
72
n
74
ASP
72
H
THR
73
n
75
THR
73
H
SER
74
n
76
SER
74
H
ARG
75
n
77
ARG
75
H
ASN
76
n
78
ASN
76
H
GLN
77
n
79
GLN
77
H
VAL
78
n
80
VAL
78
H
PHE
79
n
81
PHE
79
H
LEU
80
n
82
LEU
80
H
LYS
81
n
83
LYS
81
H
ILE
82
n
84
ILE
82
H
THR
82
n
85
A
THR
82
H
SER
82
n
86
B
SER
82
H
VAL
82
n
87
C
VAL
82
H
ASP
83
n
88
ASP
83
H
THR
84
n
89
THR
84
H
ALA
85
n
90
ALA
85
H
ASP
86
n
91
ASP
86
H
THR
87
n
92
THR
87
H
ALA
88
n
93
ALA
88
H
THR
89
n
94
THR
89
H
TYR
90
n
95
TYR
90
H
TYR
91
n
96
TYR
91
H
CYS
92
n
97
CYS
92
H
VAL
93
n
98
VAL
93
H
ARG
94
n
99
ARG
94
H
ARG
95
n
100
ARG
95
H
ALA
96
n
101
ALA
96
H
HIS
97
n
102
HIS
97
H
ASN
98
n
103
ASN
98
H
VAL
99
n
104
VAL
99
H
VAL
100
n
105
VAL
100
H
LEU
100
n
106
A
LEU
100
H
GLY
100
n
107
B
GLY
100
H
ASP
100
n
108
C
ASP
100
H
TRP
100
n
109
D
TRP
100
H
PHE
100
n
110
E
PHE
100
H
ALA
101
n
111
ALA
101
H
TYR
102
n
112
TYR
102
H
TRP
103
n
113
TRP
103
H
GLY
104
n
114
GLY
104
H
GLN
105
n
115
GLN
105
H
GLY
106
n
116
GLY
106
H
THR
107
n
117
THR
107
H
LEU
108
n
118
LEU
108
H
VAL
109
n
119
VAL
109
H
THR
110
n
120
THR
110
H
VAL
111
n
121
VAL
111
H
SER
112
n
122
SER
112
H
ALA
113
n
123
ALA
113
H
ALA
114
n
124
ALA
114
H
LYS
115
n
125
LYS
115
H
THR
116
n
126
THR
116
H
THR
117
n
127
THR
117
H
ALA
118
n
128
ALA
118
H
PRO
119
n
129
PRO
119
H
SER
120
n
130
SER
120
H
VAL
121
n
131
VAL
121
H
TYR
122
n
132
TYR
122
H
PRO
123
n
133
PRO
123
H
LEU
124
n
134
LEU
124
H
ALA
125
n
135
ALA
125
H
PRO
126
n
136
PRO
126
H
VAL
127
n
137
VAL
127
H
n
138
128
H
n
139
129
H
n
140
130
H
n
141
131
H
n
142
132
H
n
143
133
H
SER
134
n
144
SER
134
H
SER
135
n
145
SER
135
H
VAL
136
n
146
VAL
136
H
THR
137
n
147
THR
137
H
LEU
138
n
148
LEU
138
H
GLY
139
n
149
GLY
139
H
CYS
140
n
150
CYS
140
H
LEU
141
n
151
LEU
141
H
VAL
142
n
152
VAL
142
H
LYS
143
n
153
LYS
143
H
GLY
144
n
154
GLY
144
H
TYR
145
n
155
TYR
145
H
PHE
146
n
156
PHE
146
H
PRO
147
n
157
PRO
147
H
GLU
148
n
158
GLU
148
H
PRO
149
n
159
PRO
149
H
VAL
150
n
160
VAL
150
H
THR
151
n
161
THR
151
H
LEU
152
n
162
LEU
152
H
THR
153
n
163
THR
153
H
TRP
154
n
164
TRP
154
H
ASN
155
n
165
ASN
155
H
SER
156
n
166
SER
156
H
GLY
157
n
167
GLY
157
H
SER
158
n
168
SER
158
H
LEU
159
n
169
LEU
159
H
SER
160
n
170
SER
160
H
SER
161
n
171
SER
161
H
GLY
162
n
172
GLY
162
H
VAL
163
n
173
VAL
163
H
HIS
164
n
174
HIS
164
H
THR
165
n
175
THR
165
H
PHE
166
n
176
PHE
166
H
PRO
167
n
177
PRO
167
H
ALA
168
n
178
ALA
168
H
VAL
169
n
179
VAL
169
H
LEU
170
n
180
LEU
170
H
GLN
171
n
181
GLN
171
H
SER
172
n
182
SER
172
H
ASP
173
n
183
ASP
173
H
LEU
174
n
184
LEU
174
H
TYR
175
n
185
TYR
175
H
THR
176
n
186
THR
176
H
LEU
177
n
187
LEU
177
H
SER
178
n
188
SER
178
H
SER
179
n
189
SER
179
H
SER
180
n
190
SER
180
H
VAL
181
n
191
VAL
181
H
THR
182
n
192
THR
182
H
VAL
183
n
193
VAL
183
H
THR
184
n
194
THR
184
H
SER
185
n
195
SER
185
H
SER
186
n
196
SER
186
H
THR
187
n
197
THR
187
H
TRP
188
n
198
TRP
188
H
PRO
189
n
199
PRO
189
H
SER
190
n
200
SER
190
H
GLN
191
n
201
GLN
191
H
SER
192
n
202
SER
192
H
ILE
193
n
203
ILE
193
H
THR
194
n
204
THR
194
H
CYS
195
n
205
CYS
195
H
ASN
196
n
206
ASN
196
H
VAL
197
n
207
VAL
197
H
ALA
198
n
208
ALA
198
H
HIS
199
n
209
HIS
199
H
PRO
200
n
210
PRO
200
H
ALA
201
n
211
ALA
201
H
SER
202
n
212
SER
202
H
SER
203
n
213
SER
203
H
THR
204
n
214
THR
204
H
LYS
205
n
215
LYS
205
H
VAL
206
n
216
VAL
206
H
ASP
207
n
217
ASP
207
H
LYS
208
n
218
LYS
208
H
LYS
209
n
219
LYS
209
H
ILE
210
n
220
ILE
210
H
GLU
211
n
221
GLU
211
H
PRO
212
n
222
PRO
212
H
ARG
213
n
223
ARG
213
H
n
1
1
Q
ALA
2
n
2
ALA
2
Q
GLU
3
n
3
GLU
3
Q
PHE
4
n
4
PHE
4
Q
ARG
5
n
5
ARG
5
Q
HIS
6
n
6
HIS
6
Q
ASP
7
n
7
ASP
7
Q
SER
8
n
8
SER
8
Q
1.2593
-0.3576
1.9584
0.1193
-0.4316
3.9191
-0.0115
-0.2157
0.0585
0.0492
0.0305
0.0804
-0.0883
-0.6713
-0.0190
-0.0374
-0.0446
0.0335
0.0645
0.0172
0.0741
refined
-7.3609
3.4388
4.3300
X-RAY DIFFRACTION
1.1167
-0.4124
1.3443
0.8453
-1.0011
4.7177
0.0455
0.2040
-0.0456
0.0489
-0.0531
0.0046
0.4190
0.3820
0.0076
0.0371
-0.0295
0.0588
-0.0393
-0.0154
0.0303
refined
7.0519
-2.2790
-4.8590
X-RAY DIFFRACTION
L
1
A
1
L
112
A
118
X-RAY DIFFRACTION
1
L
113
A
119
L
213
A
219
X-RAY DIFFRACTION
1
H
1
B
1
H
123
B
133
X-RAY DIFFRACTION
2
H
124
B
134
H
137
B
147
X-RAY DIFFRACTION
2
H
144
B
154
H
213
B
223
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
3
trimeric
L
YCM
213
S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE
A
YCM
219
CYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
N
THR
5
A
N
THR
5
L
O
ARG
24
A
O
ARG
24
L
N
ALA
19
A
N
ALA
19
L
O
ILE
75
A
O
ILE
80
L
O
LYS
74
A
O
LYS
79
L
N
SER
63
A
N
SER
68
L
N
LEU
11
A
N
LEU
11
L
O
LYS
103
A
O
LYS
108
L
O
LEU
104
A
O
LEU
109
L
N
GLY
84
A
N
GLY
89
L
O
TYR
87
A
O
TYR
92
L
N
TYR
36
A
N
TYR
41
L
N
TRP
35
A
N
TRP
40
L
O
LEU
47
A
O
LEU
52
L
N
TYR
49
A
N
TYR
54
L
O
ASN
53
A
O
ASN
58
L
N
LEU
11
A
N
LEU
11
L
O
LYS
103
A
O
LYS
108
L
O
LEU
104
A
O
LEU
109
L
N
GLY
84
A
N
GLY
89
L
N
GLN
90
A
N
GLN
95
L
O
THR
97
A
O
THR
102
L
N
PHE
117
A
N
PHE
123
L
O
VAL
132
A
O
VAL
138
L
N
ALA
129
A
N
ALA
135
L
O
LEU
180
A
O
LEU
186
L
O
SER
175
A
O
SER
181
L
N
SER
161
A
N
SER
167
L
O
SER
152
A
O
SER
158
L
N
ILE
149
A
N
ILE
155
L
N
LYS
146
A
N
LYS
152
L
O
GLU
194
A
O
GLU
200
L
N
CYS
193
A
N
CYS
199
L
O
LYS
206
A
O
LYS
212
H
N
LYS
5
B
N
LYS
5
H
O
SER
23
B
O
SER
23
H
N
LEU
20
B
N
LEU
20
H
O
LEU
80
B
O
LEU
82
H
O
PHE
79
B
O
PHE
81
H
N
SER
70
B
N
SER
72
H
N
LEU
12
B
N
LEU
12
H
O
THR
110
B
O
THR
120
H
O
THR
107
B
O
THR
117
H
N
TYR
90
B
N
TYR
95
H
O
TYR
91
B
O
TYR
96
H
N
ILE
37
B
N
ILE
39
H
N
ARG
38
B
N
ARG
40
H
O
GLU
46
B
O
GLU
48
H
N
HIS
50
B
N
HIS
52
H
O
ASN
58
B
O
ASN
60
H
N
TYR
122
B
N
TYR
132
H
O
LEU
141
B
O
LEU
151
H
N
VAL
136
B
N
VAL
146
H
O
VAL
183
B
O
VAL
193
H
O
SER
180
B
O
SER
190
H
N
HIS
164
B
N
HIS
174
H
N
TYR
122
B
N
TYR
132
H
O
LEU
141
B
O
LEU
151
H
N
VAL
136
B
N
VAL
146
H
O
VAL
183
B
O
VAL
193
H
O
LEU
174
B
O
LEU
184
H
N
GLN
171
B
N
GLN
181
H
N
THR
153
B
N
THR
163
H
O
ASN
196
B
O
ASN
206
H
N
VAL
197
B
N
VAL
207
H
O
VAL
206
B
O
VAL
216
1
H
CYS
128
B
CYS
138
1
Y
1
H
GLY
129
B
GLY
139
1
Y
1
H
ASP
130
B
ASP
140
1
Y
1
H
THR
131
B
THR
141
1
Y
1
H
THR
132
B
THR
142
1
Y
1
H
GLY
133
B
GLY
143
1
Y
1
Q
ASP
1
C
ASP
1
1
Y
1
L
L
C
N
GLU
YCM
212
213
1.87
1
5.70
0.90
118.30
124.00
L
L
L
CB
CG
OD2
ASP
ASP
ASP
109
109
109
N
1
6.01
0.90
118.30
124.31
H
H
H
CB
CG
OD2
ASP
ASP
ASP
72
72
72
N
1
L
VAL
51
76.01
-51.29
1
L
THR
69
-136.87
-37.83
1
L
GLN
165
-38.59
126.99
1
L
LYS
168
-91.50
-75.20
1
L
LYS
198
-74.70
37.71
1
H
PHE
27
179.68
158.97
1
H
GLN
39
-168.06
109.39
1
H
ASP
55
84.01
11.26
1
H
THR
68
-162.16
90.64
1
H
ASN
76
70.43
49.24
B
1
H
SER
82
31.46
61.51
1
H
VAL
100
-177.65
-45.64
D
1
H
TRP
100
176.91
168.11
1
H
SER
160
-159.30
-49.84
1
H
SER
172
55.87
-114.96
1
H
THR
187
-163.77
-49.51
39.705
0.000
0.170
0.140
0.350
0.070
-0.320
0.945
0.890
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.277
0.208
0.211
2.503
42.640
695
13800
5.000
95.770
31.490
0.337
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.369
0.800
0.800
1.200
MAXIMUM LIKELIHOOD
MASK
2.503
42.640
63
3481
1
0
3417
0.016
0.021
3502
0.002
0.020
3062
1.573
1.937
4771
0.843
3.000
7170
6.974
5.000
438
32.969
24.088
137
16.408
15.000
564
14.995
15.000
15
0.083
0.200
543
0.005
0.020
3862
0.001
0.020
687
0.208
0.200
677
0.194
0.200
3116
0.181
0.200
1673
0.091
0.200
2129
0.168
0.200
99
0.033
0.200
1
0.142
0.200
21
0.242
0.200
44
0.248
0.200
5
0.548
1.500
2207
0.109
1.500
897
1.010
2.000
3588
1.436
3.000
1357
2.258
4.500
1183
0.433
0.289
2.568
52
862
914
20
87.130
2.500
42.640
2R0W
13814
0.071
1.296
1
10.000
1.900
96.000
0.473
2.50
2.59
1281
1.053
1
1.80
89.80
0.398
2.59
2.69
1388
1.026
1
1.90
94.80
0.312
2.69
2.82
1355
1.036
1
1.90
95.80
0.228
2.82
2.96
1395
1.104
1
2.00
95.90
0.160
2.96
3.15
1384
1.160
1
1.90
96.70
0.109
3.15
3.39
1400
1.393
1
2.00
97.00
0.087
3.39
3.73
1358
1.892
1
1.90
95.40
0.053
3.73
4.27
1427
1.425
1
1.90
97.70
0.035
4.27
5.38
1432
1.453
1
1.90
98.60
0.031
5.38
50.00
1394
1.384
1
1.90
98.20
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
phasing
A. Vagin
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
other
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
5.2.0007
data extraction
PDB
sw-help@rcsb.rutgers.edu
July 2, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.000
data collection
ADSC
Quantum
data reduction
HKL-2000
IgG2a Fab fragment light chain, IgG2a Fab fragment heavy chain, Fd portion, Amyloid beta peptide fragment
PFA2 FAB complexed with Abeta1-8
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
L
GLU
79
A
GLU
84
HELX_P
L
LEU
83
A
LEU
88
5
1
5
L
SER
120
A
SER
126
HELX_P
L
SER
126
A
SER
132
1
2
7
L
LYS
182
A
LYS
188
HELX_P
L
GLU
186
A
GLU
192
1
3
5
H
PRO
61
B
PRO
63
HELX_P
H
LYS
64
B
LYS
66
5
4
4
H
ASP
83
B
ASP
88
HELX_P
H
THR
87
B
THR
92
5
5
5
H
SER
156
B
SER
166
HELX_P
H
SER
158
B
SER
168
5
6
3
H
PRO
200
B
PRO
210
HELX_P
H
SER
203
B
SER
213
5
7
4
disulf
2.072
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
88
A
SG
CYS
93
1_555
disulf
2.056
L
CYS
133
A
SG
CYS
139
1_555
L
CYS
193
A
SG
CYS
199
1_555
disulf
2.032
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
92
B
SG
CYS
97
1_555
disulf
2.020
H
CYS
140
B
SG
CYS
150
1_555
H
CYS
195
B
SG
CYS
205
1_555
IMMUNE SYSTEM
immunoglobulin; Alzheimer disease; amyloid, IMMUNE SYSTEM
L
THR
7
A
THR
7
1
L
PRO
8
A
PRO
8
2.53
L
VAL
94
A
VAL
99
1
L
PRO
95
A
PRO
100
3.59
L
TYR
139
A
TYR
145
1
L
PRO
140
A
PRO
146
1.16
H
PHE
146
B
PHE
156
1
H
PRO
147
B
PRO
157
-1.38
H
GLU
148
B
GLU
158
1
H
PRO
149
B
PRO
159
-5.43
H
TRP
188
B
TRP
198
1
H
PRO
189
B
PRO
199
-0.59
A2NHM3_MOUSE
UNP
1
1
A2NHM3
DVLMTQTPLSLPVSLGDQASISCRSSQSIVHTNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYYCFQGSHVPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
A4_HUMAN
UNP
3
672
P05067
DAEFRHDS
Q811U5_MOUSE
UNP
2
Q811U5
1
219
2R0W
1
213
A2NHM3
L
1
1
219
672
679
2R0W
1
8
P05067
Q
2
1
8
1
118
2R0W
1
113
Q811U5
H
3
1
123
1
THR
CONFLICT
SER
27
2R0W
E
L
A2NHM3
UNP
32
32
1
ARG
CONFLICT
LEU
96
2R0W
L
A2NHM3
UNP
101
101
1
GLY
CONFLICT
ALA
100
2R0W
L
A2NHM3
UNP
105
105
1
CYS
MODIFIED RESIDUE
YCM
213
2R0W
L
A2NHM3
UNP
219
219
4
6
4
4
4
4
6
4
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
MET
4
A
MET
4
L
THR
7
A
THR
7
L
ALA
19
A
ALA
19
L
SER
25
A
SER
25
L
ASP
70
A
ASP
75
L
ILE
75
A
ILE
80
L
PHE
62
A
PHE
67
L
SER
67
A
SER
72
L
SER
10
A
SER
10
L
VAL
13
A
VAL
13
L
THR
102
A
THR
107
L
ILE
106
A
ILE
111
L
GLY
84
A
GLY
89
L
GLN
90
A
GLN
95
L
LEU
33
A
LEU
38
L
GLN
38
A
GLN
43
L
LYS
45
A
LYS
50
L
TYR
49
A
TYR
54
L
ASN
53
A
ASN
58
L
ARG
54
A
ARG
59
L
SER
10
A
SER
10
L
VAL
13
A
VAL
13
L
THR
102
A
THR
107
L
ILE
106
A
ILE
111
L
GLY
84
A
GLY
89
L
GLN
90
A
GLN
95
L
THR
97
A
THR
102
L
PHE
98
A
PHE
103
L
THR
113
A
THR
119
L
PHE
117
A
PHE
123
L
GLY
128
A
GLY
134
L
PHE
138
A
PHE
144
L
TYR
172
A
TYR
178
L
THR
181
A
THR
187
L
VAL
158
A
VAL
164
L
TRP
162
A
TRP
168
L
SER
152
A
SER
158
L
GLU
153
A
GLU
159
L
ASN
144
A
ASN
150
L
ILE
149
A
ILE
155
L
SER
190
A
SER
196
L
THR
196
A
THR
202
L
ILE
204
A
ILE
210
L
ASN
209
A
ASN
215
H
THR
3
B
THR
3
H
SER
7
B
SER
7
H
LEU
18
B
LEU
18
H
SER
25
B
SER
25
H
GLN
77
B
GLN
79
H
ILE
82
B
ILE
84
H
ILE
69
B
ILE
71
H
ASP
72
B
ASP
74
H
ILE
11
B
ILE
11
H
LEU
12
B
LEU
12
H
THR
107
B
THR
117
H
VAL
111
B
VAL
121
H
ALA
88
B
ALA
93
H
ARG
94
B
ARG
99
H
GLY
35
B
GLY
35
H
GLN
39
B
GLN
41
H
GLU
46
B
GLU
48
H
TRP
52
B
TRP
54
H
LYS
57
B
LYS
59
H
TYR
59
B
TYR
61
H
SER
120
B
SER
130
H
LEU
124
B
LEU
134
H
SER
135
B
SER
145
H
TYR
145
B
TYR
155
H
LEU
174
B
LEU
184
H
THR
184
B
THR
194
H
VAL
163
B
VAL
173
H
THR
165
B
THR
175
H
SER
120
B
SER
130
H
LEU
124
B
LEU
134
H
SER
135
B
SER
145
H
TYR
145
B
TYR
155
H
LEU
174
B
LEU
184
H
THR
184
B
THR
194
H
VAL
169
B
VAL
179
H
GLN
171
B
GLN
181
H
THR
151
B
THR
161
H
TRP
154
B
TRP
164
H
THR
194
B
THR
204
H
HIS
199
B
HIS
209
H
THR
204
B
THR
214
H
LYS
209
B
LYS
219
BINDING SITE FOR RESIDUE NA L 214
Software
1
L
ASP
82
A
ASP
87
1
1_555
1
P 1