0.023368 0.000224 0.002040 0.000000 0.023081 0.001035 0.000000 0.000000 0.017188 0.00000 0.00000 0.00000 Gardberg, A.S. Dealwis, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 92.510 94.960 90.550 42.793 43.327 58.456 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C5 H10 N2 O3 S 178.209 n S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE CYSTEINE-S-ACETAMIDE L-peptide linking US Proc.Natl.Acad.Sci.Usa PNASA6 0040 0027-8424 104 15659 15664 10.1073/pnas.0705888104 17895381 Molecular basis for passive immunotherapy of Alzheimer's disease 2007 100 1 CCD ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 24203.863 IgG2a Fab fragment light chain light chain 1 nat polymer 24020.068 IgG2a Fab fragment heavy chain, Fd portion Fd portion of heavy chain 1 nat polymer 977.975 Amyloid beta peptide fragment octapeptide 1 syn polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 63 nat water Amyloid beta A4 protein, fragment no yes DVLMTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYYCFQGSHVPLTFGAGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE(YCM) DVLMTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYYCFQGSHVPLTFGAGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC L polypeptide(L) no no QVTLKESGPGILKPSQTLSLTCSLSGFSLRTSGMGVGWIRQPSGKGLEWLAHIWWDDDKNYNPSLKSQLTISKDTSRNQV FLKITSVDTADTATYYCVRRAHNVVLGDWFAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPV TLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR QVTLKESGPGILKPSQTLSLTCSLSGFSLRTSGMGVGWIRQPSGKGLEWLAHIWWDDDKNYNPSLKSQLTISKDTSRNQV FLKITSVDTADTATYYCVRRAHNVVLGDWFAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPV TLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR H polypeptide(L) no no DAEFRHDS DAEFRHDS Q polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Hybridoma Mus sample 10090 Mus musculus house mouse hybridoma Mus sample 10090 Mus musculus 1 2.19 43.87 VAPOR DIFFUSION 5.3 25% PEG-MME 5000, 0.1 M OAc, pH 5.3, VAPOR DIFFUSION, temperature 295K 295 software repository Initial release Advisory Version format compliance Refinement description 1 0 2007-10-16 1 1 2011-07-13 1 2 2017-10-25 _software.classification _software.contact_author _software.contact_author_email _software.date _software.language _software.location _software.name _software.type _software.version SEQUENCE RESIDUES L GLU 212 AND L YCM 213 HAVE VERY LONG DISTANCE OF C-N BOND, 1.87, AND MAY NOT BE LINKED. N RCSB Y RCSB 2007-08-21 REL REL NA SODIUM ION HOH water NA 1 4 NA NA 214 L HOH 1 5 HOH HOH 215 L HOH 4 5 HOH HOH 216 L HOH 7 5 HOH HOH 217 L HOH 8 5 HOH HOH 218 L HOH 9 5 HOH HOH 219 L HOH 12 5 HOH HOH 220 L HOH 15 5 HOH HOH 221 L HOH 16 5 HOH HOH 222 L HOH 18 5 HOH HOH 223 L HOH 19 5 HOH HOH 224 L HOH 20 5 HOH HOH 225 L HOH 21 5 HOH HOH 226 L HOH 23 5 HOH HOH 227 L HOH 28 5 HOH HOH 228 L HOH 29 5 HOH HOH 229 L HOH 30 5 HOH HOH 230 L HOH 32 5 HOH HOH 231 L HOH 34 5 HOH HOH 232 L HOH 35 5 HOH HOH 233 L HOH 39 5 HOH HOH 234 L HOH 41 5 HOH HOH 235 L HOH 45 5 HOH HOH 236 L HOH 46 5 HOH HOH 237 L HOH 49 5 HOH HOH 238 L HOH 50 5 HOH HOH 239 L HOH 51 5 HOH HOH 240 L HOH 53 5 HOH HOH 241 L HOH 54 5 HOH HOH 242 L HOH 58 5 HOH HOH 243 L HOH 59 5 HOH HOH 244 L HOH 60 5 HOH HOH 245 L HOH 2 5 HOH HOH 214 H HOH 3 5 HOH HOH 215 H HOH 5 5 HOH HOH 216 H HOH 6 5 HOH HOH 217 H HOH 10 5 HOH HOH 218 H HOH 11 5 HOH HOH 219 H HOH 13 5 HOH HOH 220 H HOH 14 5 HOH HOH 221 H HOH 17 5 HOH HOH 222 H HOH 22 5 HOH HOH 223 H HOH 24 5 HOH HOH 224 H HOH 25 5 HOH HOH 225 H HOH 26 5 HOH HOH 226 H HOH 27 5 HOH HOH 227 H HOH 31 5 HOH HOH 228 H HOH 33 5 HOH HOH 229 H HOH 36 5 HOH HOH 230 H HOH 37 5 HOH HOH 231 H HOH 38 5 HOH HOH 232 H HOH 40 5 HOH HOH 233 H HOH 42 5 HOH HOH 234 H HOH 43 5 HOH HOH 235 H HOH 44 5 HOH HOH 236 H HOH 47 5 HOH HOH 237 H HOH 48 5 HOH HOH 238 H HOH 52 5 HOH HOH 239 H HOH 55 5 HOH HOH 240 H HOH 56 5 HOH HOH 241 H HOH 57 5 HOH HOH 242 H HOH 62 5 HOH HOH 243 H HOH 63 5 HOH HOH 244 H HOH 61 5 HOH HOH 61 Q ASP 1 n 1 ASP 1 L VAL 2 n 2 VAL 2 L LEU 3 n 3 LEU 3 L MET 4 n 4 MET 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L THR 7 n 7 THR 7 L PRO 8 n 8 PRO 8 L LEU 9 n 9 LEU 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L PRO 12 n 12 PRO 12 L VAL 13 n 13 VAL 13 L SER 14 n 14 SER 14 L LEU 15 n 15 LEU 15 L GLY 16 n 16 GLY 16 L ASP 17 n 17 ASP 17 L GLN 18 n 18 GLN 18 L ALA 19 n 19 ALA 19 L SER 20 n 20 SER 20 L ILE 21 n 21 ILE 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L ARG 24 n 24 ARG 24 L SER 25 n 25 SER 25 L SER 26 n 26 SER 26 L GLN 27 n 27 GLN 27 L SER 27 n 28 A SER 27 L ILE 27 n 29 B ILE 27 L VAL 27 n 30 C VAL 27 L HIS 27 n 31 D HIS 27 L SER 27 n 32 E SER 27 L ASN 28 n 33 ASN 28 L GLY 29 n 34 GLY 29 L ASN 30 n 35 ASN 30 L THR 31 n 36 THR 31 L TYR 32 n 37 TYR 32 L LEU 33 n 38 LEU 33 L GLU 34 n 39 GLU 34 L TRP 35 n 40 TRP 35 L TYR 36 n 41 TYR 36 L LEU 37 n 42 LEU 37 L GLN 38 n 43 GLN 38 L LYS 39 n 44 LYS 39 L PRO 40 n 45 PRO 40 L GLY 41 n 46 GLY 41 L GLN 42 n 47 GLN 42 L SER 43 n 48 SER 43 L PRO 44 n 49 PRO 44 L LYS 45 n 50 LYS 45 L LEU 46 n 51 LEU 46 L LEU 47 n 52 LEU 47 L ILE 48 n 53 ILE 48 L TYR 49 n 54 TYR 49 L LYS 50 n 55 LYS 50 L VAL 51 n 56 VAL 51 L SER 52 n 57 SER 52 L ASN 53 n 58 ASN 53 L ARG 54 n 59 ARG 54 L PHE 55 n 60 PHE 55 L SER 56 n 61 SER 56 L GLY 57 n 62 GLY 57 L VAL 58 n 63 VAL 58 L PRO 59 n 64 PRO 59 L ASP 60 n 65 ASP 60 L ARG 61 n 66 ARG 61 L PHE 62 n 67 PHE 62 L SER 63 n 68 SER 63 L GLY 64 n 69 GLY 64 L SER 65 n 70 SER 65 L GLY 66 n 71 GLY 66 L SER 67 n 72 SER 67 L GLY 68 n 73 GLY 68 L THR 69 n 74 THR 69 L ASP 70 n 75 ASP 70 L PHE 71 n 76 PHE 71 L THR 72 n 77 THR 72 L LEU 73 n 78 LEU 73 L LYS 74 n 79 LYS 74 L ILE 75 n 80 ILE 75 L SER 76 n 81 SER 76 L ARG 77 n 82 ARG 77 L VAL 78 n 83 VAL 78 L GLU 79 n 84 GLU 79 L ALA 80 n 85 ALA 80 L GLU 81 n 86 GLU 81 L ASP 82 n 87 ASP 82 L LEU 83 n 88 LEU 83 L GLY 84 n 89 GLY 84 L VAL 85 n 90 VAL 85 L TYR 86 n 91 TYR 86 L TYR 87 n 92 TYR 87 L CYS 88 n 93 CYS 88 L PHE 89 n 94 PHE 89 L GLN 90 n 95 GLN 90 L GLY 91 n 96 GLY 91 L SER 92 n 97 SER 92 L HIS 93 n 98 HIS 93 L VAL 94 n 99 VAL 94 L PRO 95 n 100 PRO 95 L LEU 96 n 101 LEU 96 L THR 97 n 102 THR 97 L PHE 98 n 103 PHE 98 L GLY 99 n 104 GLY 99 L ALA 100 n 105 ALA 100 L GLY 101 n 106 GLY 101 L THR 102 n 107 THR 102 L LYS 103 n 108 LYS 103 L LEU 104 n 109 LEU 104 L GLU 105 n 110 GLU 105 L ILE 106 n 111 ILE 106 L LYS 106 n 112 A LYS 106 L ARG 107 n 113 ARG 107 L ALA 108 n 114 ALA 108 L ASP 109 n 115 ASP 109 L ALA 110 n 116 ALA 110 L ALA 111 n 117 ALA 111 L PRO 112 n 118 PRO 112 L THR 113 n 119 THR 113 L VAL 114 n 120 VAL 114 L SER 115 n 121 SER 115 L ILE 116 n 122 ILE 116 L PHE 117 n 123 PHE 117 L PRO 118 n 124 PRO 118 L PRO 119 n 125 PRO 119 L SER 120 n 126 SER 120 L SER 121 n 127 SER 121 L GLU 122 n 128 GLU 122 L GLN 123 n 129 GLN 123 L LEU 124 n 130 LEU 124 L THR 125 n 131 THR 125 L SER 126 n 132 SER 126 L GLY 127 n 133 GLY 127 L GLY 128 n 134 GLY 128 L ALA 129 n 135 ALA 129 L SER 130 n 136 SER 130 L VAL 131 n 137 VAL 131 L VAL 132 n 138 VAL 132 L CYS 133 n 139 CYS 133 L PHE 134 n 140 PHE 134 L LEU 135 n 141 LEU 135 L ASN 136 n 142 ASN 136 L ASN 137 n 143 ASN 137 L PHE 138 n 144 PHE 138 L TYR 139 n 145 TYR 139 L PRO 140 n 146 PRO 140 L LYS 141 n 147 LYS 141 L ASP 142 n 148 ASP 142 L ILE 143 n 149 ILE 143 L ASN 144 n 150 ASN 144 L VAL 145 n 151 VAL 145 L LYS 146 n 152 LYS 146 L TRP 147 n 153 TRP 147 L LYS 148 n 154 LYS 148 L ILE 149 n 155 ILE 149 L ASP 150 n 156 ASP 150 L GLY 151 n 157 GLY 151 L SER 152 n 158 SER 152 L GLU 153 n 159 GLU 153 L ARG 154 n 160 ARG 154 L GLN 155 n 161 GLN 155 L ASN 156 n 162 ASN 156 L GLY 157 n 163 GLY 157 L VAL 158 n 164 VAL 158 L LEU 159 n 165 LEU 159 L ASN 160 n 166 ASN 160 L SER 161 n 167 SER 161 L TRP 162 n 168 TRP 162 L THR 163 n 169 THR 163 L ASP 164 n 170 ASP 164 L GLN 165 n 171 GLN 165 L ASP 166 n 172 ASP 166 L SER 167 n 173 SER 167 L LYS 168 n 174 LYS 168 L ASP 169 n 175 ASP 169 L SER 170 n 176 SER 170 L THR 171 n 177 THR 171 L TYR 172 n 178 TYR 172 L SER 173 n 179 SER 173 L MET 174 n 180 MET 174 L SER 175 n 181 SER 175 L SER 176 n 182 SER 176 L THR 177 n 183 THR 177 L LEU 178 n 184 LEU 178 L THR 179 n 185 THR 179 L LEU 180 n 186 LEU 180 L THR 181 n 187 THR 181 L LYS 182 n 188 LYS 182 L ASP 183 n 189 ASP 183 L GLU 184 n 190 GLU 184 L TYR 185 n 191 TYR 185 L GLU 186 n 192 GLU 186 L ARG 187 n 193 ARG 187 L HIS 188 n 194 HIS 188 L ASN 189 n 195 ASN 189 L SER 190 n 196 SER 190 L TYR 191 n 197 TYR 191 L THR 192 n 198 THR 192 L CYS 193 n 199 CYS 193 L GLU 194 n 200 GLU 194 L ALA 195 n 201 ALA 195 L THR 196 n 202 THR 196 L HIS 197 n 203 HIS 197 L LYS 198 n 204 LYS 198 L THR 199 n 205 THR 199 L SER 200 n 206 SER 200 L THR 201 n 207 THR 201 L SER 202 n 208 SER 202 L PRO 203 n 209 PRO 203 L ILE 204 n 210 ILE 204 L VAL 205 n 211 VAL 205 L LYS 206 n 212 LYS 206 L SER 207 n 213 SER 207 L PHE 208 n 214 PHE 208 L ASN 209 n 215 ASN 209 L ARG 210 n 216 ARG 210 L ASN 211 n 217 ASN 211 L GLU 212 n 218 GLU 212 L YCM 213 n 219 YCM 213 L GLN 1 n 1 GLN 1 H VAL 2 n 2 VAL 2 H THR 3 n 3 THR 3 H LEU 4 n 4 LEU 4 H LYS 5 n 5 LYS 5 H GLU 6 n 6 GLU 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H PRO 9 n 9 PRO 9 H GLY 10 n 10 GLY 10 H ILE 11 n 11 ILE 11 H LEU 12 n 12 LEU 12 H LYS 13 n 13 LYS 13 H PRO 14 n 14 PRO 14 H SER 15 n 15 SER 15 H GLN 16 n 16 GLN 16 H THR 17 n 17 THR 17 H LEU 18 n 18 LEU 18 H SER 19 n 19 SER 19 H LEU 20 n 20 LEU 20 H THR 21 n 21 THR 21 H CYS 22 n 22 CYS 22 H SER 23 n 23 SER 23 H LEU 24 n 24 LEU 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H PHE 27 n 27 PHE 27 H SER 28 n 28 SER 28 H LEU 29 n 29 LEU 29 H ARG 30 n 30 ARG 30 H THR 31 n 31 THR 31 H SER 32 n 32 SER 32 H GLY 33 n 33 GLY 33 H MET 34 n 34 MET 34 H GLY 35 n 35 GLY 35 H VAL 35 n 36 A VAL 35 H GLY 35 n 37 B GLY 35 H TRP 36 n 38 TRP 36 H ILE 37 n 39 ILE 37 H ARG 38 n 40 ARG 38 H GLN 39 n 41 GLN 39 H PRO 40 n 42 PRO 40 H SER 41 n 43 SER 41 H GLY 42 n 44 GLY 42 H LYS 43 n 45 LYS 43 H GLY 44 n 46 GLY 44 H LEU 45 n 47 LEU 45 H GLU 46 n 48 GLU 46 H TRP 47 n 49 TRP 47 H LEU 48 n 50 LEU 48 H ALA 49 n 51 ALA 49 H HIS 50 n 52 HIS 50 H ILE 51 n 53 ILE 51 H TRP 52 n 54 TRP 52 H TRP 53 n 55 TRP 53 H ASP 54 n 56 ASP 54 H ASP 55 n 57 ASP 55 H ASP 56 n 58 ASP 56 H LYS 57 n 59 LYS 57 H ASN 58 n 60 ASN 58 H TYR 59 n 61 TYR 59 H ASN 60 n 62 ASN 60 H PRO 61 n 63 PRO 61 H SER 62 n 64 SER 62 H LEU 63 n 65 LEU 63 H LYS 64 n 66 LYS 64 H SER 65 n 67 SER 65 H GLN 66 n 68 GLN 66 H LEU 67 n 69 LEU 67 H THR 68 n 70 THR 68 H ILE 69 n 71 ILE 69 H SER 70 n 72 SER 70 H LYS 71 n 73 LYS 71 H ASP 72 n 74 ASP 72 H THR 73 n 75 THR 73 H SER 74 n 76 SER 74 H ARG 75 n 77 ARG 75 H ASN 76 n 78 ASN 76 H GLN 77 n 79 GLN 77 H VAL 78 n 80 VAL 78 H PHE 79 n 81 PHE 79 H LEU 80 n 82 LEU 80 H LYS 81 n 83 LYS 81 H ILE 82 n 84 ILE 82 H THR 82 n 85 A THR 82 H SER 82 n 86 B SER 82 H VAL 82 n 87 C VAL 82 H ASP 83 n 88 ASP 83 H THR 84 n 89 THR 84 H ALA 85 n 90 ALA 85 H ASP 86 n 91 ASP 86 H THR 87 n 92 THR 87 H ALA 88 n 93 ALA 88 H THR 89 n 94 THR 89 H TYR 90 n 95 TYR 90 H TYR 91 n 96 TYR 91 H CYS 92 n 97 CYS 92 H VAL 93 n 98 VAL 93 H ARG 94 n 99 ARG 94 H ARG 95 n 100 ARG 95 H ALA 96 n 101 ALA 96 H HIS 97 n 102 HIS 97 H ASN 98 n 103 ASN 98 H VAL 99 n 104 VAL 99 H VAL 100 n 105 VAL 100 H LEU 100 n 106 A LEU 100 H GLY 100 n 107 B GLY 100 H ASP 100 n 108 C ASP 100 H TRP 100 n 109 D TRP 100 H PHE 100 n 110 E PHE 100 H ALA 101 n 111 ALA 101 H TYR 102 n 112 TYR 102 H TRP 103 n 113 TRP 103 H GLY 104 n 114 GLY 104 H GLN 105 n 115 GLN 105 H GLY 106 n 116 GLY 106 H THR 107 n 117 THR 107 H LEU 108 n 118 LEU 108 H VAL 109 n 119 VAL 109 H THR 110 n 120 THR 110 H VAL 111 n 121 VAL 111 H SER 112 n 122 SER 112 H ALA 113 n 123 ALA 113 H ALA 114 n 124 ALA 114 H LYS 115 n 125 LYS 115 H THR 116 n 126 THR 116 H THR 117 n 127 THR 117 H ALA 118 n 128 ALA 118 H PRO 119 n 129 PRO 119 H SER 120 n 130 SER 120 H VAL 121 n 131 VAL 121 H TYR 122 n 132 TYR 122 H PRO 123 n 133 PRO 123 H LEU 124 n 134 LEU 124 H ALA 125 n 135 ALA 125 H PRO 126 n 136 PRO 126 H VAL 127 n 137 VAL 127 H n 138 128 H n 139 129 H n 140 130 H n 141 131 H n 142 132 H n 143 133 H SER 134 n 144 SER 134 H SER 135 n 145 SER 135 H VAL 136 n 146 VAL 136 H THR 137 n 147 THR 137 H LEU 138 n 148 LEU 138 H GLY 139 n 149 GLY 139 H CYS 140 n 150 CYS 140 H LEU 141 n 151 LEU 141 H VAL 142 n 152 VAL 142 H LYS 143 n 153 LYS 143 H GLY 144 n 154 GLY 144 H TYR 145 n 155 TYR 145 H PHE 146 n 156 PHE 146 H PRO 147 n 157 PRO 147 H GLU 148 n 158 GLU 148 H PRO 149 n 159 PRO 149 H VAL 150 n 160 VAL 150 H THR 151 n 161 THR 151 H LEU 152 n 162 LEU 152 H THR 153 n 163 THR 153 H TRP 154 n 164 TRP 154 H ASN 155 n 165 ASN 155 H SER 156 n 166 SER 156 H GLY 157 n 167 GLY 157 H SER 158 n 168 SER 158 H LEU 159 n 169 LEU 159 H SER 160 n 170 SER 160 H SER 161 n 171 SER 161 H GLY 162 n 172 GLY 162 H VAL 163 n 173 VAL 163 H HIS 164 n 174 HIS 164 H THR 165 n 175 THR 165 H PHE 166 n 176 PHE 166 H PRO 167 n 177 PRO 167 H ALA 168 n 178 ALA 168 H VAL 169 n 179 VAL 169 H LEU 170 n 180 LEU 170 H GLN 171 n 181 GLN 171 H SER 172 n 182 SER 172 H ASP 173 n 183 ASP 173 H LEU 174 n 184 LEU 174 H TYR 175 n 185 TYR 175 H THR 176 n 186 THR 176 H LEU 177 n 187 LEU 177 H SER 178 n 188 SER 178 H SER 179 n 189 SER 179 H SER 180 n 190 SER 180 H VAL 181 n 191 VAL 181 H THR 182 n 192 THR 182 H VAL 183 n 193 VAL 183 H THR 184 n 194 THR 184 H SER 185 n 195 SER 185 H SER 186 n 196 SER 186 H THR 187 n 197 THR 187 H TRP 188 n 198 TRP 188 H PRO 189 n 199 PRO 189 H SER 190 n 200 SER 190 H GLN 191 n 201 GLN 191 H SER 192 n 202 SER 192 H ILE 193 n 203 ILE 193 H THR 194 n 204 THR 194 H CYS 195 n 205 CYS 195 H ASN 196 n 206 ASN 196 H VAL 197 n 207 VAL 197 H ALA 198 n 208 ALA 198 H HIS 199 n 209 HIS 199 H PRO 200 n 210 PRO 200 H ALA 201 n 211 ALA 201 H SER 202 n 212 SER 202 H SER 203 n 213 SER 203 H THR 204 n 214 THR 204 H LYS 205 n 215 LYS 205 H VAL 206 n 216 VAL 206 H ASP 207 n 217 ASP 207 H LYS 208 n 218 LYS 208 H LYS 209 n 219 LYS 209 H ILE 210 n 220 ILE 210 H GLU 211 n 221 GLU 211 H PRO 212 n 222 PRO 212 H ARG 213 n 223 ARG 213 H n 1 1 Q ALA 2 n 2 ALA 2 Q GLU 3 n 3 GLU 3 Q PHE 4 n 4 PHE 4 Q ARG 5 n 5 ARG 5 Q HIS 6 n 6 HIS 6 Q ASP 7 n 7 ASP 7 Q SER 8 n 8 SER 8 Q 1.2593 -0.3576 1.9584 0.1193 -0.4316 3.9191 -0.0115 -0.2157 0.0585 0.0492 0.0305 0.0804 -0.0883 -0.6713 -0.0190 -0.0374 -0.0446 0.0335 0.0645 0.0172 0.0741 refined -7.3609 3.4388 4.3300 X-RAY DIFFRACTION 1.1167 -0.4124 1.3443 0.8453 -1.0011 4.7177 0.0455 0.2040 -0.0456 0.0489 -0.0531 0.0046 0.4190 0.3820 0.0076 0.0371 -0.0295 0.0588 -0.0393 -0.0154 0.0303 refined 7.0519 -2.2790 -4.8590 X-RAY DIFFRACTION L 1 A 1 L 112 A 118 X-RAY DIFFRACTION 1 L 113 A 119 L 213 A 219 X-RAY DIFFRACTION 1 H 1 B 1 H 123 B 133 X-RAY DIFFRACTION 2 H 124 B 134 H 137 B 147 X-RAY DIFFRACTION 2 H 144 B 154 H 213 B 223 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PISA 3 trimeric L YCM 213 S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE A YCM 219 CYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L N THR 5 A N THR 5 L O ARG 24 A O ARG 24 L N ALA 19 A N ALA 19 L O ILE 75 A O ILE 80 L O LYS 74 A O LYS 79 L N SER 63 A N SER 68 L N LEU 11 A N LEU 11 L O LYS 103 A O LYS 108 L O LEU 104 A O LEU 109 L N GLY 84 A N GLY 89 L O TYR 87 A O TYR 92 L N TYR 36 A N TYR 41 L N TRP 35 A N TRP 40 L O LEU 47 A O LEU 52 L N TYR 49 A N TYR 54 L O ASN 53 A O ASN 58 L N LEU 11 A N LEU 11 L O LYS 103 A O LYS 108 L O LEU 104 A O LEU 109 L N GLY 84 A N GLY 89 L N GLN 90 A N GLN 95 L O THR 97 A O THR 102 L N PHE 117 A N PHE 123 L O VAL 132 A O VAL 138 L N ALA 129 A N ALA 135 L O LEU 180 A O LEU 186 L O SER 175 A O SER 181 L N SER 161 A N SER 167 L O SER 152 A O SER 158 L N ILE 149 A N ILE 155 L N LYS 146 A N LYS 152 L O GLU 194 A O GLU 200 L N CYS 193 A N CYS 199 L O LYS 206 A O LYS 212 H N LYS 5 B N LYS 5 H O SER 23 B O SER 23 H N LEU 20 B N LEU 20 H O LEU 80 B O LEU 82 H O PHE 79 B O PHE 81 H N SER 70 B N SER 72 H N LEU 12 B N LEU 12 H O THR 110 B O THR 120 H O THR 107 B O THR 117 H N TYR 90 B N TYR 95 H O TYR 91 B O TYR 96 H N ILE 37 B N ILE 39 H N ARG 38 B N ARG 40 H O GLU 46 B O GLU 48 H N HIS 50 B N HIS 52 H O ASN 58 B O ASN 60 H N TYR 122 B N TYR 132 H O LEU 141 B O LEU 151 H N VAL 136 B N VAL 146 H O VAL 183 B O VAL 193 H O SER 180 B O SER 190 H N HIS 164 B N HIS 174 H N TYR 122 B N TYR 132 H O LEU 141 B O LEU 151 H N VAL 136 B N VAL 146 H O VAL 183 B O VAL 193 H O LEU 174 B O LEU 184 H N GLN 171 B N GLN 181 H N THR 153 B N THR 163 H O ASN 196 B O ASN 206 H N VAL 197 B N VAL 207 H O VAL 206 B O VAL 216 1 H CYS 128 B CYS 138 1 Y 1 H GLY 129 B GLY 139 1 Y 1 H ASP 130 B ASP 140 1 Y 1 H THR 131 B THR 141 1 Y 1 H THR 132 B THR 142 1 Y 1 H GLY 133 B GLY 143 1 Y 1 Q ASP 1 C ASP 1 1 Y 1 L L C N GLU YCM 212 213 1.87 1 5.70 0.90 118.30 124.00 L L L CB CG OD2 ASP ASP ASP 109 109 109 N 1 6.01 0.90 118.30 124.31 H H H CB CG OD2 ASP ASP ASP 72 72 72 N 1 L VAL 51 76.01 -51.29 1 L THR 69 -136.87 -37.83 1 L GLN 165 -38.59 126.99 1 L LYS 168 -91.50 -75.20 1 L LYS 198 -74.70 37.71 1 H PHE 27 179.68 158.97 1 H GLN 39 -168.06 109.39 1 H ASP 55 84.01 11.26 1 H THR 68 -162.16 90.64 1 H ASN 76 70.43 49.24 B 1 H SER 82 31.46 61.51 1 H VAL 100 -177.65 -45.64 D 1 H TRP 100 176.91 168.11 1 H SER 160 -159.30 -49.84 1 H SER 172 55.87 -114.96 1 H THR 187 -163.77 -49.51 39.705 0.000 0.170 0.140 0.350 0.070 -0.320 0.945 0.890 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.277 0.208 0.211 2.503 42.640 695 13800 5.000 95.770 31.490 0.337 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 MOLECULAR REPLACEMENT 0.369 0.800 0.800 1.200 MAXIMUM LIKELIHOOD MASK 2.503 42.640 63 3481 1 0 3417 0.016 0.021 3502 0.002 0.020 3062 1.573 1.937 4771 0.843 3.000 7170 6.974 5.000 438 32.969 24.088 137 16.408 15.000 564 14.995 15.000 15 0.083 0.200 543 0.005 0.020 3862 0.001 0.020 687 0.208 0.200 677 0.194 0.200 3116 0.181 0.200 1673 0.091 0.200 2129 0.168 0.200 99 0.033 0.200 1 0.142 0.200 21 0.242 0.200 44 0.248 0.200 5 0.548 1.500 2207 0.109 1.500 897 1.010 2.000 3588 1.436 3.000 1357 2.258 4.500 1183 0.433 0.289 2.568 52 862 914 20 87.130 2.500 42.640 2R0W 13814 0.071 1.296 1 10.000 1.900 96.000 0.473 2.50 2.59 1281 1.053 1 1.80 89.80 0.398 2.59 2.69 1388 1.026 1 1.90 94.80 0.312 2.69 2.82 1355 1.036 1 1.90 95.80 0.228 2.82 2.96 1395 1.104 1 2.00 95.90 0.160 2.96 3.15 1384 1.160 1 1.90 96.70 0.109 3.15 3.39 1400 1.393 1 2.00 97.00 0.087 3.39 3.73 1358 1.892 1 1.90 95.40 0.053 3.73 4.27 1427 1.425 1 1.90 97.70 0.035 4.27 5.38 1432 1.453 1 1.90 98.60 0.031 5.38 50.00 1394 1.384 1 1.90 98.20 data reduction Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm DENZO package data scaling Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm SCALEPACK package phasing A. Vagin alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP other refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program 5.2.0007 data extraction PDB sw-help@rcsb.rutgers.edu July 2, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.000 data collection ADSC Quantum data reduction HKL-2000 IgG2a Fab fragment light chain, IgG2a Fab fragment heavy chain, Fd portion, Amyloid beta peptide fragment PFA2 FAB complexed with Abeta1-8 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N L GLU 79 A GLU 84 HELX_P L LEU 83 A LEU 88 5 1 5 L SER 120 A SER 126 HELX_P L SER 126 A SER 132 1 2 7 L LYS 182 A LYS 188 HELX_P L GLU 186 A GLU 192 1 3 5 H PRO 61 B PRO 63 HELX_P H LYS 64 B LYS 66 5 4 4 H ASP 83 B ASP 88 HELX_P H THR 87 B THR 92 5 5 5 H SER 156 B SER 166 HELX_P H SER 158 B SER 168 5 6 3 H PRO 200 B PRO 210 HELX_P H SER 203 B SER 213 5 7 4 disulf 2.072 L CYS 23 A SG CYS 23 1_555 L CYS 88 A SG CYS 93 1_555 disulf 2.056 L CYS 133 A SG CYS 139 1_555 L CYS 193 A SG CYS 199 1_555 disulf 2.032 H CYS 22 B SG CYS 22 1_555 H CYS 92 B SG CYS 97 1_555 disulf 2.020 H CYS 140 B SG CYS 150 1_555 H CYS 195 B SG CYS 205 1_555 IMMUNE SYSTEM immunoglobulin; Alzheimer disease; amyloid, IMMUNE SYSTEM L THR 7 A THR 7 1 L PRO 8 A PRO 8 2.53 L VAL 94 A VAL 99 1 L PRO 95 A PRO 100 3.59 L TYR 139 A TYR 145 1 L PRO 140 A PRO 146 1.16 H PHE 146 B PHE 156 1 H PRO 147 B PRO 157 -1.38 H GLU 148 B GLU 158 1 H PRO 149 B PRO 159 -5.43 H TRP 188 B TRP 198 1 H PRO 189 B PRO 199 -0.59 A2NHM3_MOUSE UNP 1 1 A2NHM3 DVLMTQTPLSLPVSLGDQASISCRSSQSIVHTNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYYCFQGSHVPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC A4_HUMAN UNP 3 672 P05067 DAEFRHDS Q811U5_MOUSE UNP 2 Q811U5 1 219 2R0W 1 213 A2NHM3 L 1 1 219 672 679 2R0W 1 8 P05067 Q 2 1 8 1 118 2R0W 1 113 Q811U5 H 3 1 123 1 THR CONFLICT SER 27 2R0W E L A2NHM3 UNP 32 32 1 ARG CONFLICT LEU 96 2R0W L A2NHM3 UNP 101 101 1 GLY CONFLICT ALA 100 2R0W L A2NHM3 UNP 105 105 1 CYS MODIFIED RESIDUE YCM 213 2R0W L A2NHM3 UNP 219 219 4 6 4 4 4 4 6 4 4 3 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L MET 4 A MET 4 L THR 7 A THR 7 L ALA 19 A ALA 19 L SER 25 A SER 25 L ASP 70 A ASP 75 L ILE 75 A ILE 80 L PHE 62 A PHE 67 L SER 67 A SER 72 L SER 10 A SER 10 L VAL 13 A VAL 13 L THR 102 A THR 107 L ILE 106 A ILE 111 L GLY 84 A GLY 89 L GLN 90 A GLN 95 L LEU 33 A LEU 38 L GLN 38 A GLN 43 L LYS 45 A LYS 50 L TYR 49 A TYR 54 L ASN 53 A ASN 58 L ARG 54 A ARG 59 L SER 10 A SER 10 L VAL 13 A VAL 13 L THR 102 A THR 107 L ILE 106 A ILE 111 L GLY 84 A GLY 89 L GLN 90 A GLN 95 L THR 97 A THR 102 L PHE 98 A PHE 103 L THR 113 A THR 119 L PHE 117 A PHE 123 L GLY 128 A GLY 134 L PHE 138 A PHE 144 L TYR 172 A TYR 178 L THR 181 A THR 187 L VAL 158 A VAL 164 L TRP 162 A TRP 168 L SER 152 A SER 158 L GLU 153 A GLU 159 L ASN 144 A ASN 150 L ILE 149 A ILE 155 L SER 190 A SER 196 L THR 196 A THR 202 L ILE 204 A ILE 210 L ASN 209 A ASN 215 H THR 3 B THR 3 H SER 7 B SER 7 H LEU 18 B LEU 18 H SER 25 B SER 25 H GLN 77 B GLN 79 H ILE 82 B ILE 84 H ILE 69 B ILE 71 H ASP 72 B ASP 74 H ILE 11 B ILE 11 H LEU 12 B LEU 12 H THR 107 B THR 117 H VAL 111 B VAL 121 H ALA 88 B ALA 93 H ARG 94 B ARG 99 H GLY 35 B GLY 35 H GLN 39 B GLN 41 H GLU 46 B GLU 48 H TRP 52 B TRP 54 H LYS 57 B LYS 59 H TYR 59 B TYR 61 H SER 120 B SER 130 H LEU 124 B LEU 134 H SER 135 B SER 145 H TYR 145 B TYR 155 H LEU 174 B LEU 184 H THR 184 B THR 194 H VAL 163 B VAL 173 H THR 165 B THR 175 H SER 120 B SER 130 H LEU 124 B LEU 134 H SER 135 B SER 145 H TYR 145 B TYR 155 H LEU 174 B LEU 184 H THR 184 B THR 194 H VAL 169 B VAL 179 H GLN 171 B GLN 181 H THR 151 B THR 161 H TRP 154 B TRP 164 H THR 194 B THR 204 H HIS 199 B HIS 209 H THR 204 B THR 214 H LYS 209 B LYS 219 BINDING SITE FOR RESIDUE NA L 214 Software 1 L ASP 82 A ASP 87 1 1_555 1 P 1