0.014094 0.000000 0.002648 0.000000 0.013863 0.000000 0.000000 0.000000 0.013967 0.00000 0.00000 0.00000 Spurlino, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 100.64 90.00 70.950 72.135 72.850 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C19 H21 Cl F3 N5 O2 443.851 N-[2-({[amino(imino)methyl]amino}oxy)ethyl]-2-{6-chloro-3-[(2,2-difluoro-2-phenylethyl)amino]-2-fluorophenyl}acetamide non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Bioorg.Med.Chem.Lett. BMCLE8 1127 0960-894X 17 6266 6269 10.1016/j.bmcl.2007.09.013 17889527 2-(2-Chloro-6-Fluorophenyl)Acetamides as Potent Thrombin Inhibitors 2007 1 IMAGE PLATE 2001-03-06 RIGAKU RAXIS II SINGLE WAVELENGTH M x-ray 1 1.0 ROTATING ANODE ENRAF-NONIUS FR591 3075.470 Thrombin light chain 3.4.21.5 unp residues 334-359 1 nat polymer 29780.219 Thrombin heavy chain 3.4.21.5 1 man polymer 1411.465 Hirudin-3A unp residues 55-65 1 man polymer 443.851 N-[2-({[amino(imino)methyl]amino}oxy)ethyl]-2-{6-chloro-3-[(2,2-difluoro-2-phenylethyl)amino]-2-fluorophenyl}acetamide 1 syn non-polymer 18.015 water 137 nat water Hirudin IIIA no no ADCGLRPLFEKKSLEDKTERELLESY ADCGLRPLFEKKSLEDKTERELLESY A polypeptide(L) no no IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE B polypeptide(L) no no DFEEIPEEYLQ DFEEIPEEYLQ H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample F2 9606 Homo sapiens Medicinal leech sample 6421 Hirudo medicinalis Human sample 9606 Homo sapiens 1 2.67 53.95 repository Initial release Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance 1 0 2008-08-26 1 1 2011-07-13 RCSB Y RCSB 2007-08-27 REL REL I50 N-[2-({[amino(imino)methyl]amino}oxy)ethyl]-2-{6-chloro-3-[(2,2-difluoro-2-phenylethyl)amino]-2-fluorophenyl}acetamide HOH water I50 5000 4 I50 I50 5000 B HOH 33 5 HOH HOH 33 A HOH 34 5 HOH HOH 34 A HOH 35 5 HOH HOH 35 A HOH 36 5 HOH HOH 36 A HOH 37 5 HOH HOH 37 A HOH 38 5 HOH HOH 38 A HOH 39 5 HOH HOH 39 A HOH 40 5 HOH HOH 40 A HOH 41 5 HOH HOH 41 A HOH 42 5 HOH HOH 42 A HOH 43 5 HOH HOH 43 A HOH 44 5 HOH HOH 44 A HOH 5001 5 HOH HOH 5001 B HOH 5002 5 HOH HOH 5002 B HOH 5003 5 HOH HOH 5003 B HOH 5004 5 HOH HOH 5004 B HOH 5005 5 HOH HOH 5005 B HOH 5006 5 HOH HOH 5006 B HOH 5007 5 HOH HOH 5007 B HOH 5008 5 HOH HOH 5008 B HOH 5009 5 HOH HOH 5009 B HOH 5010 5 HOH HOH 5010 B HOH 5011 5 HOH HOH 5011 B HOH 5012 5 HOH HOH 5012 B HOH 5013 5 HOH HOH 5013 B HOH 5014 5 HOH HOH 5014 B HOH 5015 5 HOH HOH 5015 B HOH 5016 5 HOH HOH 5016 B HOH 5017 5 HOH HOH 5017 B HOH 5018 5 HOH HOH 5018 B HOH 5019 5 HOH HOH 5019 B HOH 5020 5 HOH HOH 5020 B HOH 5021 5 HOH HOH 5021 B HOH 5022 5 HOH HOH 5022 B HOH 5023 5 HOH HOH 5023 B HOH 5024 5 HOH HOH 5024 B HOH 5025 5 HOH HOH 5025 B HOH 5026 5 HOH HOH 5026 B HOH 5027 5 HOH HOH 5027 B HOH 5028 5 HOH HOH 5028 B HOH 5029 5 HOH HOH 5029 B HOH 5030 5 HOH HOH 5030 B HOH 5031 5 HOH HOH 5031 B HOH 5032 5 HOH HOH 5032 B HOH 5033 5 HOH HOH 5033 B HOH 5034 5 HOH HOH 5034 B HOH 5035 5 HOH HOH 5035 B HOH 5036 5 HOH HOH 5036 B HOH 5037 5 HOH HOH 5037 B HOH 5038 5 HOH HOH 5038 B HOH 5039 5 HOH HOH 5039 B HOH 5040 5 HOH HOH 5040 B HOH 5041 5 HOH HOH 5041 B HOH 5042 5 HOH HOH 5042 B HOH 5043 5 HOH HOH 5043 B HOH 5044 5 HOH HOH 5044 B HOH 5045 5 HOH HOH 5045 B HOH 5046 5 HOH HOH 5046 B HOH 5047 5 HOH HOH 5047 B HOH 5048 5 HOH HOH 5048 B HOH 5049 5 HOH HOH 5049 B HOH 5050 5 HOH HOH 5050 B HOH 5051 5 HOH HOH 5051 B HOH 5052 5 HOH HOH 5052 B HOH 5053 5 HOH HOH 5053 B HOH 5054 5 HOH HOH 5054 B HOH 5055 5 HOH HOH 5055 B HOH 5056 5 HOH HOH 5056 B HOH 5057 5 HOH HOH 5057 B HOH 5058 5 HOH HOH 5058 B HOH 5059 5 HOH HOH 5059 B HOH 5060 5 HOH HOH 5060 B HOH 5061 5 HOH HOH 5061 B HOH 5062 5 HOH HOH 5062 B HOH 5063 5 HOH HOH 5063 B HOH 5064 5 HOH HOH 5064 B HOH 5065 5 HOH HOH 5065 B HOH 5066 5 HOH HOH 5066 B HOH 5067 5 HOH HOH 5067 B HOH 5068 5 HOH HOH 5068 B HOH 5069 5 HOH HOH 5069 B HOH 5070 5 HOH HOH 5070 B HOH 5071 5 HOH HOH 5071 B HOH 5072 5 HOH HOH 5072 B HOH 5073 5 HOH HOH 5073 B HOH 5074 5 HOH HOH 5074 B HOH 5075 5 HOH HOH 5075 B HOH 5076 5 HOH HOH 5076 B HOH 5077 5 HOH HOH 5077 B HOH 5078 5 HOH HOH 5078 B HOH 5079 5 HOH HOH 5079 B HOH 5080 5 HOH HOH 5080 B HOH 5081 5 HOH HOH 5081 B HOH 5082 5 HOH HOH 5082 B HOH 5083 5 HOH HOH 5083 B HOH 5084 5 HOH HOH 5084 B HOH 5085 5 HOH HOH 5085 B HOH 5086 5 HOH HOH 5086 B HOH 5087 5 HOH HOH 5087 B HOH 5088 5 HOH HOH 5088 B HOH 5089 5 HOH HOH 5089 B HOH 5090 5 HOH HOH 5090 B HOH 5091 5 HOH HOH 5091 B HOH 5092 5 HOH HOH 5092 B HOH 5093 5 HOH HOH 5093 B HOH 5094 5 HOH HOH 5094 B HOH 5095 5 HOH HOH 5095 B HOH 5096 5 HOH HOH 5096 B HOH 5097 5 HOH HOH 5097 B HOH 5098 5 HOH HOH 5098 B HOH 5099 5 HOH HOH 5099 B HOH 5100 5 HOH HOH 5100 B HOH 5101 5 HOH HOH 5101 B HOH 5102 5 HOH HOH 5102 B HOH 5103 5 HOH HOH 5103 B HOH 5104 5 HOH HOH 5104 B HOH 5105 5 HOH HOH 5105 B HOH 5106 5 HOH HOH 5106 B HOH 5107 5 HOH HOH 5107 B HOH 5108 5 HOH HOH 5108 B HOH 5109 5 HOH HOH 5109 B HOH 5110 5 HOH HOH 5110 B HOH 5111 5 HOH HOH 5111 B HOH 5112 5 HOH HOH 5112 B HOH 5113 5 HOH HOH 5113 B HOH 5114 5 HOH HOH 5114 B HOH 5115 5 HOH HOH 5115 B HOH 5116 5 HOH HOH 5116 B HOH 5117 5 HOH HOH 5117 B HOH 5118 5 HOH HOH 5118 B HOH 5119 5 HOH HOH 5119 B HOH 5120 5 HOH HOH 5120 B HOH 5121 5 HOH HOH 5121 B HOH 5122 5 HOH HOH 5122 B HOH 301 5 HOH HOH 301 H HOH 302 5 HOH HOH 302 H HOH 303 5 HOH HOH 303 H ALA 7 n 1 ALA 7 A ASP 8 n 2 ASP 8 A CYS 9 n 3 CYS 9 A GLY 10 n 4 GLY 10 A LEU 11 n 5 LEU 11 A ARG 12 n 6 ARG 12 A PRO 13 n 7 PRO 13 A LEU 14 n 8 LEU 14 A PHE 15 n 9 PHE 15 A GLU 16 n 10 GLU 16 A LYS 17 n 11 LYS 17 A LYS 18 n 12 LYS 18 A SER 19 n 13 SER 19 A LEU 20 n 14 LEU 20 A GLU 21 n 15 GLU 21 A ASP 22 n 16 ASP 22 A LYS 23 n 17 LYS 23 A THR 24 n 18 THR 24 A GLU 25 n 19 GLU 25 A ARG 26 n 20 ARG 26 A GLU 27 n 21 GLU 27 A LEU 28 n 22 LEU 28 A LEU 29 n 23 LEU 29 A GLU 30 n 24 GLU 30 A SER 31 n 25 SER 31 A TYR 32 n 26 TYR 32 A ILE 37 n 1 ILE 37 B VAL 38 n 2 VAL 38 B GLU 39 n 3 GLU 39 B GLY 40 n 4 GLY 40 B SER 41 n 5 SER 41 B ASP 42 n 6 ASP 42 B ALA 43 n 7 ALA 43 B GLU 44 n 8 GLU 44 B ILE 45 n 9 ILE 45 B GLY 46 n 10 GLY 46 B MET 47 n 11 MET 47 B SER 48 n 12 SER 48 B PRO 49 n 13 PRO 49 B TRP 50 n 14 TRP 50 B GLN 51 n 15 GLN 51 B VAL 52 n 16 VAL 52 B MET 53 n 17 MET 53 B LEU 54 n 18 LEU 54 B PHE 55 n 19 PHE 55 B ARG 56 n 20 ARG 56 B LYS 57 n 21 LYS 57 B SER 58 n 22 SER 58 B PRO 59 n 23 PRO 59 B GLN 60 n 24 GLN 60 B GLU 61 n 25 GLU 61 B LEU 62 n 26 LEU 62 B LEU 63 n 27 LEU 63 B CYS 64 n 28 CYS 64 B GLY 65 n 29 GLY 65 B ALA 66 n 30 ALA 66 B SER 67 n 31 SER 67 B LEU 68 n 32 LEU 68 B ILE 69 n 33 ILE 69 B SER 70 n 34 SER 70 B ASP 71 n 35 ASP 71 B ARG 72 n 36 ARG 72 B TRP 73 n 37 TRP 73 B VAL 74 n 38 VAL 74 B LEU 75 n 39 LEU 75 B THR 76 n 40 THR 76 B ALA 77 n 41 ALA 77 B ALA 78 n 42 ALA 78 B HIS 79 n 43 HIS 79 B CYS 80 n 44 CYS 80 B LEU 81 n 45 LEU 81 B LEU 82 n 46 LEU 82 B TYR 83 n 47 TYR 83 B PRO 84 n 48 PRO 84 B PRO 85 n 49 PRO 85 B TRP 86 n 50 TRP 86 B ASP 87 n 51 ASP 87 B LYS 88 n 52 LYS 88 B ASN 89 n 53 ASN 89 B PHE 90 n 54 PHE 90 B THR 91 n 55 THR 91 B GLU 92 n 56 GLU 92 B ASN 93 n 57 ASN 93 B ASP 94 n 58 ASP 94 B LEU 95 n 59 LEU 95 B LEU 96 n 60 LEU 96 B VAL 97 n 61 VAL 97 B ARG 98 n 62 ARG 98 B ILE 99 n 63 ILE 99 B GLY 100 n 64 GLY 100 B LYS 101 n 65 LYS 101 B HIS 102 n 66 HIS 102 B SER 103 n 67 SER 103 B ARG 104 n 68 ARG 104 B THR 105 n 69 THR 105 B ARG 106 n 70 ARG 106 B TYR 107 n 71 TYR 107 B GLU 108 n 72 GLU 108 B ARG 109 n 73 ARG 109 B ASN 110 n 74 ASN 110 B ILE 111 n 75 ILE 111 B GLU 112 n 76 GLU 112 B LYS 113 n 77 LYS 113 B ILE 114 n 78 ILE 114 B SER 115 n 79 SER 115 B MET 116 n 80 MET 116 B LEU 117 n 81 LEU 117 B GLU 118 n 82 GLU 118 B LYS 119 n 83 LYS 119 B ILE 120 n 84 ILE 120 B TYR 121 n 85 TYR 121 B ILE 122 n 86 ILE 122 B HIS 123 n 87 HIS 123 B PRO 124 n 88 PRO 124 B ARG 125 n 89 ARG 125 B TYR 126 n 90 TYR 126 B ASN 127 n 91 ASN 127 B TRP 128 n 92 TRP 128 B ARG 129 n 93 ARG 129 B GLU 130 n 94 GLU 130 B ASN 131 n 95 ASN 131 B LEU 132 n 96 LEU 132 B ASP 133 n 97 ASP 133 B ARG 134 n 98 ARG 134 B ASP 135 n 99 ASP 135 B ILE 136 n 100 ILE 136 B ALA 137 n 101 ALA 137 B LEU 138 n 102 LEU 138 B MET 139 n 103 MET 139 B LYS 140 n 104 LYS 140 B LEU 141 n 105 LEU 141 B LYS 142 n 106 LYS 142 B LYS 143 n 107 LYS 143 B PRO 144 n 108 PRO 144 B VAL 145 n 109 VAL 145 B ALA 146 n 110 ALA 146 B PHE 147 n 111 PHE 147 B SER 148 n 112 SER 148 B ASP 149 n 113 ASP 149 B TYR 150 n 114 TYR 150 B ILE 151 n 115 ILE 151 B HIS 152 n 116 HIS 152 B PRO 153 n 117 PRO 153 B VAL 154 n 118 VAL 154 B CYS 155 n 119 CYS 155 B LEU 156 n 120 LEU 156 B PRO 157 n 121 PRO 157 B ASP 158 n 122 ASP 158 B ARG 159 n 123 ARG 159 B GLU 160 n 124 GLU 160 B THR 161 n 125 THR 161 B ALA 162 n 126 ALA 162 B ALA 163 n 127 ALA 163 B SER 164 n 128 SER 164 B LEU 165 n 129 LEU 165 B LEU 166 n 130 LEU 166 B GLN 167 n 131 GLN 167 B ALA 168 n 132 ALA 168 B GLY 169 n 133 GLY 169 B TYR 170 n 134 TYR 170 B LYS 171 n 135 LYS 171 B GLY 172 n 136 GLY 172 B ARG 173 n 137 ARG 173 B VAL 174 n 138 VAL 174 B THR 175 n 139 THR 175 B GLY 176 n 140 GLY 176 B TRP 177 n 141 TRP 177 B GLY 178 n 142 GLY 178 B ASN 179 n 143 ASN 179 B LEU 180 n 144 LEU 180 B LYS 181 n 145 LYS 181 B GLU 182 n 146 GLU 182 B n 147 A 182 B n 148 B 182 B n 149 C 182 B n 150 D 182 B n 151 E 182 B n 152 F 182 B n 153 G 182 B n 154 H 182 B GLY 185 n 155 GLY 185 B GLN 186 n 156 GLN 186 B PRO 187 n 157 PRO 187 B SER 188 n 158 SER 188 B VAL 189 n 159 VAL 189 B LEU 190 n 160 LEU 190 B GLN 191 n 161 GLN 191 B VAL 192 n 162 VAL 192 B VAL 193 n 163 VAL 193 B ASN 194 n 164 ASN 194 B LEU 195 n 165 LEU 195 B PRO 196 n 166 PRO 196 B ILE 197 n 167 ILE 197 B VAL 198 n 168 VAL 198 B GLU 199 n 169 GLU 199 B ARG 200 n 170 ARG 200 B PRO 201 n 171 PRO 201 B VAL 202 n 172 VAL 202 B CYS 203 n 173 CYS 203 B LYS 204 n 174 LYS 204 B ASP 205 n 175 ASP 205 B SER 206 n 176 SER 206 B THR 207 n 177 THR 207 B ARG 208 n 178 ARG 208 B ILE 209 n 179 ILE 209 B ARG 210 n 180 ARG 210 B ILE 211 n 181 ILE 211 B THR 212 n 182 THR 212 B ASP 213 n 183 ASP 213 B ASN 214 n 184 ASN 214 B MET 215 n 185 MET 215 B PHE 216 n 186 PHE 216 B CYS 217 n 187 CYS 217 B ALA 218 n 188 ALA 218 B GLY 219 n 189 GLY 219 B TYR 220 n 190 TYR 220 B LYS 221 n 191 LYS 221 B PRO 222 n 192 PRO 222 B ASP 223 n 193 ASP 223 B GLU 224 n 194 GLU 224 B GLY 225 n 195 GLY 225 B LYS 226 n 196 LYS 226 B ARG 227 n 197 ARG 227 B GLY 228 n 198 GLY 228 B ASP 229 n 199 ASP 229 B ALA 230 n 200 ALA 230 B CYS 231 n 201 CYS 231 B GLU 232 n 202 GLU 232 B GLY 233 n 203 GLY 233 B ASP 234 n 204 ASP 234 B SER 235 n 205 SER 235 B GLY 236 n 206 GLY 236 B GLY 237 n 207 GLY 237 B PRO 238 n 208 PRO 238 B PHE 239 n 209 PHE 239 B VAL 240 n 210 VAL 240 B MET 241 n 211 MET 241 B LYS 242 n 212 LYS 242 B SER 243 n 213 SER 243 B PRO 244 n 214 PRO 244 B PHE 245 n 215 PHE 245 B ASN 246 n 216 ASN 246 B ASN 247 n 217 ASN 247 B ARG 248 n 218 ARG 248 B TRP 249 n 219 TRP 249 B TYR 250 n 220 TYR 250 B GLN 251 n 221 GLN 251 B MET 252 n 222 MET 252 B GLY 253 n 223 GLY 253 B ILE 254 n 224 ILE 254 B VAL 255 n 225 VAL 255 B SER 256 n 226 SER 256 B TRP 257 n 227 TRP 257 B GLY 258 n 228 GLY 258 B GLU 259 n 229 GLU 259 B GLY 260 n 230 GLY 260 B CYS 261 n 231 CYS 261 B ASP 262 n 232 ASP 262 B ARG 263 n 233 ARG 263 B ASP 264 n 234 ASP 264 B GLY 265 n 235 GLY 265 B LYS 266 n 236 LYS 266 B TYR 267 n 237 TYR 267 B GLY 268 n 238 GLY 268 B PHE 269 n 239 PHE 269 B TYR 270 n 240 TYR 270 B THR 271 n 241 THR 271 B HIS 272 n 242 HIS 272 B VAL 273 n 243 VAL 273 B PHE 274 n 244 PHE 274 B ARG 275 n 245 ARG 275 B LEU 276 n 246 LEU 276 B LYS 277 n 247 LYS 277 B LYS 278 n 248 LYS 278 B TRP 279 n 249 TRP 279 B ILE 280 n 250 ILE 280 B GLN 281 n 251 GLN 281 B LYS 282 n 252 LYS 282 B VAL 283 n 253 VAL 283 B ILE 284 n 254 ILE 284 B ASP 285 n 255 ASP 285 B GLN 286 n 256 GLN 286 B PHE 287 n 257 PHE 287 B n 258 288 B n 259 289 B ASP 290 n 1 ASP 290 H PHE 291 n 2 PHE 291 H GLU 292 n 3 GLU 292 H GLU 293 n 4 GLU 293 H ILE 294 n 5 ILE 294 H PRO 295 n 6 PRO 295 H GLU 296 n 7 GLU 296 H GLU 297 n 8 GLU 297 H TYR 298 n 9 TYR 298 H LEU 299 n 10 LEU 299 H GLN 300 n 11 GLN 300 H author_defined_assembly 3 trimeric 3260 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 B N SER 41 B N SER 5 B O VAL 192 B O VAL 162 B O LEU 195 B O LEU 165 B N GLY 172 B N GLY 136 B N ARG 173 B N ARG 137 B O VAL 240 B O VAL 210 B N MET 241 B N MET 211 B O TYR 250 B O TYR 220 B N TRP 257 B N TRP 227 B O PHE 269 B O PHE 239 B O TYR 270 B O TYR 240 B N PHE 216 B N PHE 186 B O LYS 113 B O LYS 77 B N ILE 99 B N ILE 63 B O LEU 96 B O LEU 60 B N PHE 55 B N PHE 19 B N ARG 56 B N ARG 20 B O GLU 61 B O GLU 25 B N SER 67 B N SER 31 B O LEU 75 B O LEU 39 B N THR 76 B N THR 40 B O ALA 137 B O ALA 101 B O LYS 140 B O LYS 104 B N GLU 118 B N GLU 82 B N TYR 83 B N TYR 47 B O LYS 88 B O LYS 52 1 B ARG 106 B ARG 70 A 1 B THR 182 B THR 147 1 Y B 1 B TRP 182 B TRP 148 1 Y C 1 B THR 182 B THR 149 1 Y D 1 B ALA 182 B ALA 150 1 Y E 1 B ASN 182 B ASN 151 1 Y F 1 B VAL 182 B VAL 152 1 Y G 1 B GLY 182 B GLY 153 1 Y H 1 B LYS 182 B LYS 154 1 Y 1 B GLY 288 B GLY 258 1 Y 1 B GLU 289 B GLU 259 1 Y 1 B B C N SER ARG 103 104 1.20 1 B B C N SER ARG 103 104 -0.139 0.023 1.336 1.197 Y 1 B B NH1 NH2 ARG ARG 106 106 0.36 1_555 2_555 1 B B NE NE ARG ARG 106 106 0.80 1_555 2_555 1 B B CZ NH1 ARG ARG 106 106 1.12 1_555 2_555 1 B B CD NE ARG ARG 106 106 1.26 1_555 2_555 1 B B NE CZ ARG ARG 106 106 1.38 1_555 2_555 1 B B CZ NH2 ARG ARG 106 106 1.46 1_555 2_555 1 B B CD CD ARG ARG 106 106 1.53 1_555 2_555 1 B B NE NH1 ARG ARG 106 106 1.92 1_555 2_555 1 A PHE 15 -127.95 -88.63 1 B ARG 72 -141.16 16.30 1 B TYR 83 -152.12 83.53 1 B ASN 89 -155.80 79.44 1 B HIS 102 -136.61 -52.49 1 B ASN 110 68.26 -3.91 1 B GLU 130 -111.84 -71.69 1 B ARG 227 -123.71 -169.09 1 B SER 256 -111.28 -75.30 1 H LEU 299 -69.95 28.32 29.99 3.93100 0.00000 -4.52900 -4.37200 -0.00000 0.44200 0.214 0.168 2.10 20.00 1873 18902 9.910 89.250 1 ml 44.364 0.366 2.10 20.00 137 2499 30 0 2332 0.004 0.599 11.805 0.052 0.002 0.252 2.121 343 34 55.000 0.235 2.143 374 34 62.000 0.248 2.166 377 34 61.000 0.238 2.190 438 34 67.000 0.216 2.214 414 34 68.000 0.235 2.240 433 34 71.000 0.240 2.268 453 34 75.000 0.219 2.296 489 34 75.000 0.221 2.327 458 34 76.000 0.216 2.359 475 34 77.000 0.205 2.392 494 34 80.000 0.194 2.428 494 34 78.000 0.200 2.466 477 34 80.000 0.186 2.506 518 34 81.000 0.199 2.550 502 34 81.000 0.203 2.596 534 34 86.000 0.199 2.646 535 34 87.000 0.197 2.700 536 34 85.000 0.197 2.759 504 34 83.000 0.179 2.823 531 34 85.000 0.177 2.893 533 34 87.000 0.198 2.972 547 34 86.000 0.173 3.059 537 34 87.000 0.183 3.158 549 34 87.000 0.154 3.271 524 34 86.000 0.149 3.402 563 34 89.000 0.134 3.556 548 34 87.000 0.124 3.744 540 34 89.000 0.128 3.978 564 34 88.000 0.114 4.286 536 34 86.000 0.123 4.717 547 34 87.000 0.118 5.399 549 34 88.000 0.160 6.801 573 34 90.000 0.173 71.638 540 34 82.000 23.65 2.1 20 2R2M 18902 1 refinement P.D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package data extraction PDB sw-help@rcsb.rutgers.edu July 2, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.000 phasing X-PLOR Thrombin light chain, Thrombin heavy chain (E.C.3.4.21.5), Hirudin-3A 2-(2-Chloro-6-Fluorophenyl)Acetamides as Potent Thrombin Inhibitors 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N A PHE 15 A PHE 9 HELX_P A SER 19 A SER 13 5 1 5 A THR 24 A THR 18 HELX_P A TYR 32 A TYR 26 1 2 9 B ALA 77 B ALA 41 HELX_P B CYS 80 B CYS 44 5 3 4 B PRO 84 B PRO 48 HELX_P B ASP 87 B ASP 51 5 4 4 B THR 91 B THR 55 HELX_P B ASN 93 B ASN 57 5 5 3 B ASP 158 B ASP 122 HELX_P B LEU 166 B LEU 130 1 6 9 B GLU 199 B GLU 169 HELX_P B ASP 205 B ASP 175 1 7 7 B LYS 221 B LYS 191 HELX_P B GLY 225 B GLY 195 5 8 5 B LEU 276 B LEU 246 HELX_P B PHE 287 B PHE 257 1 9 12 disulf 2.041 A CYS 9 A SG CYS 3 1_555 B CYS 155 B SG CYS 119 1_555 disulf 2.026 B CYS 64 B SG CYS 28 1_555 B CYS 80 B SG CYS 44 1_555 disulf 2.014 B CYS 203 B SG CYS 173 1_555 B CYS 217 B SG CYS 187 1_555 disulf 2.026 B CYS 231 B SG CYS 201 1_555 B CYS 261 B SG CYS 231 1_555 HYDROLASE/HYDROLASE INHIBITOR Thrombin, Acute phase, Blood coagulation, Cleavage on pair of basic residues, Disease mutation, Gamma-carboxyglutamic acid, Glycoprotein, Kringle, Protease, Secreted, Serine protease, Zymogen, Protease inhibitor, Serine protease inhibitor, Sulfation, HYDROLASE-HYDROLASE INHIBITOR complex B SER 58 B SER 22 1 B PRO 59 B PRO 23 -1.26 THRB_HUMAN UNP 1 334 P00734 ADCGLRPLFEKKSLEDKTERELLESY THRB_HUMAN UNP 2 364 P00734 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ITHG_HIRME UNP 3 55 P28507 DFEEIPEEYLQ 334 359 2R2M 7 32 P00734 A 1 1 26 364 622 2R2M 37 289 P00734 B 2 1 259 55 65 2R2M 290 300 P28507 H 3 1 11 7 7 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel B SER 41 B SER 5 B ASP 42 B ASP 6 B GLN 191 B GLN 161 B PRO 196 B PRO 166 B LYS 171 B LYS 135 B GLY 176 B GLY 140 B PRO 238 B PRO 208 B LYS 242 B LYS 212 B TRP 249 B TRP 219 B TRP 257 B TRP 227 B GLY 268 B GLY 238 B HIS 272 B HIS 242 B MET 215 B MET 185 B ALA 218 B ALA 188 B LYS 113 B LYS 77 B SER 115 B SER 79 B LEU 95 B LEU 59 B ILE 99 B ILE 63 B GLN 51 B GLN 15 B ARG 56 B ARG 20 B GLU 61 B GLU 25 B LEU 68 B LEU 32 B TRP 73 B TRP 37 B THR 76 B THR 40 B ALA 137 B ALA 101 B LEU 141 B LEU 105 B LEU 117 B LEU 81 B ILE 122 B ILE 86 B LEU 82 B LEU 46 B TYR 83 B TYR 47 B LYS 88 B LYS 52 B ASN 89 B ASN 53 BINDING SITE FOR RESIDUE I50 B 5000 Software 15 BINDING SITE FOR CHAIN H OF HIRUDIN-3A Software 14 B HIS 79 B HIS 43 15 1_555 B TYR 83 B TYR 47 15 1_555 B GLU 130 B GLU 94 15 1_555 B ASP 229 B ASP 199 15 1_555 B ALA 230 B ALA 200 15 1_555 B CYS 231 B CYS 201 15 1_555 B SER 235 B SER 205 15 1_555 B SER 256 B SER 226 15 1_555 B TRP 257 B TRP 227 15 1_555 B GLY 258 B GLY 228 15 1_555 B GLU 259 B GLU 229 15 1_555 B GLY 260 B GLY 230 15 1_555 B CYS 261 B CYS 231 15 1_555 B HOH 5005 F HOH 15 1_555 B HOH 5099 F HOH 15 1_555 B PHE 55 B PHE 19 14 1_555 B LYS 57 B LYS 21 14 1_555 B GLN 60 B GLN 24 14 1_555 B LEU 62 B LEU 26 14 1_555 B LEU 96 B LEU 60 14 1_555 B ARG 104 B ARG 68 14 1_555 B THR 105 B THR 69 14 1_555 B ARG 106 B ARG 70 14 1_555 B TYR 107 B TYR 71 14 1_555 B MET 116 B MET 80 14 1_555 B HOH 5115 F HOH 14 2_555 B HOH 5122 F HOH 14 1_555 H HOH 301 G HOH 14 1_555 H HOH 302 G HOH 14 1_555 5 C 1 2 1