0.018864
0.000000
0.000000
0.000000
0.014114
0.000000
0.000000
0.000000
0.013931
0.00000
0.00000
0.00000
Fischmann, T.O.
Hruza, A.W.
Madison, V.M.
Duca, J.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
53.010
70.850
71.780
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C18 H14 F N5
319.336
6-(2-fluorophenyl)-N-(pyridin-3-ylmethyl)imidazo[1,2-a]pyrazin-8-amine
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biopolymers
BIPMAA
0161
0006-3525
89
372
379
10.1002/bip.20868
17937404
Structure-guided discovery of cyclin-dependent kinase inhibitors.
2008
1.00000
0.00000
0.00000
0.00000
1.00000
0.00000
0.00000
0.00000
1.00000
0.00000
0.00000
0.00000
100
1
CCD
2002-08-01
ADSC QUANTUM 210
Si(III) double crystal system
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
17-ID
APS
1.0000
SYNCHROTRON
APS BEAMLINE 17-ID
34002.527
Cell division protein kinase 2
2.7.11.22
1
man
polymer
319.336
6-(2-fluorophenyl)-N-(pyridin-3-ylmethyl)imidazo[1,2-a]pyrazin-8-amine
1
syn
non-polymer
18.015
water
269
nat
water
p33 protein kinase
no
yes
(ACE)MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENK
LYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP
VRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD
YKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL
XMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV
FEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTY
THEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPS
FPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
CDK2
9606
Homo sapiens
10469
unidentified baculovirus
SF9
1
1.98
37.99
VAPOR DIFFUSION
7.4
50 mM Na-HEPES pH 7.4, 50 mM Ammonium Acetate, 8% PEG 4000, 4% Glycerol, 1 mM TCEP, vapor diffusion, temperature 298K
298
repository
Initial release
Version format compliance
1
0
2008-01-22
1
1
2011-07-13
RCSB
Y
RCSB
2007-08-29
REL
REL
SC9
6-(2-fluorophenyl)-N-(pyridin-3-ylmethyl)imidazo[1,2-a]pyrazin-8-amine
HOH
water
SC9
501
2
SC9
SC9
501
A
HOH
1001
3
HOH
HOH
1001
A
HOH
1002
3
HOH
HOH
1002
A
HOH
1003
3
HOH
HOH
1003
A
HOH
1004
3
HOH
HOH
1004
A
HOH
1005
3
HOH
HOH
1005
A
HOH
1006
3
HOH
HOH
1006
A
HOH
1007
3
HOH
HOH
1007
A
HOH
1008
3
HOH
HOH
1008
A
HOH
1009
3
HOH
HOH
1009
A
HOH
1010
3
HOH
HOH
1010
A
HOH
1011
3
HOH
HOH
1011
A
HOH
1012
3
HOH
HOH
1012
A
HOH
1013
3
HOH
HOH
1013
A
HOH
1014
3
HOH
HOH
1014
A
HOH
1015
3
HOH
HOH
1015
A
HOH
1016
3
HOH
HOH
1016
A
HOH
1017
3
HOH
HOH
1017
A
HOH
1018
3
HOH
HOH
1018
A
HOH
1019
3
HOH
HOH
1019
A
HOH
1020
3
HOH
HOH
1020
A
HOH
1021
3
HOH
HOH
1021
A
HOH
1022
3
HOH
HOH
1022
A
HOH
1023
3
HOH
HOH
1023
A
HOH
1024
3
HOH
HOH
1024
A
HOH
1025
3
HOH
HOH
1025
A
HOH
1026
3
HOH
HOH
1026
A
HOH
1027
3
HOH
HOH
1027
A
HOH
1028
3
HOH
HOH
1028
A
HOH
1029
3
HOH
HOH
1029
A
HOH
1030
3
HOH
HOH
1030
A
HOH
1031
3
HOH
HOH
1031
A
HOH
1032
3
HOH
HOH
1032
A
HOH
1033
3
HOH
HOH
1033
A
HOH
1034
3
HOH
HOH
1034
A
HOH
1035
3
HOH
HOH
1035
A
HOH
1036
3
HOH
HOH
1036
A
HOH
1037
3
HOH
HOH
1037
A
HOH
1038
3
HOH
HOH
1038
A
HOH
1039
3
HOH
HOH
1039
A
HOH
1040
3
HOH
HOH
1040
A
HOH
1041
3
HOH
HOH
1041
A
HOH
1042
3
HOH
HOH
1042
A
HOH
1043
3
HOH
HOH
1043
A
HOH
1044
3
HOH
HOH
1044
A
HOH
1045
3
HOH
HOH
1045
A
HOH
1046
3
HOH
HOH
1046
A
HOH
1047
3
HOH
HOH
1047
A
HOH
1048
3
HOH
HOH
1048
A
HOH
1049
3
HOH
HOH
1049
A
HOH
1050
3
HOH
HOH
1050
A
HOH
1051
3
HOH
HOH
1051
A
HOH
1052
3
HOH
HOH
1052
A
HOH
1053
3
HOH
HOH
1053
A
HOH
1054
3
HOH
HOH
1054
A
HOH
1055
3
HOH
HOH
1055
A
HOH
1056
3
HOH
HOH
1056
A
HOH
1057
3
HOH
HOH
1057
A
HOH
1058
3
HOH
HOH
1058
A
HOH
1059
3
HOH
HOH
1059
A
HOH
1060
3
HOH
HOH
1060
A
HOH
1061
3
HOH
HOH
1061
A
HOH
1062
3
HOH
HOH
1062
A
HOH
1063
3
HOH
HOH
1063
A
HOH
1064
3
HOH
HOH
1064
A
HOH
1065
3
HOH
HOH
1065
A
HOH
1066
3
HOH
HOH
1066
A
HOH
1067
3
HOH
HOH
1067
A
HOH
1068
3
HOH
HOH
1068
A
HOH
1069
3
HOH
HOH
1069
A
HOH
1070
3
HOH
HOH
1070
A
HOH
1071
3
HOH
HOH
1071
A
HOH
1072
3
HOH
HOH
1072
A
HOH
1073
3
HOH
HOH
1073
A
HOH
1074
3
HOH
HOH
1074
A
HOH
1075
3
HOH
HOH
1075
A
HOH
1076
3
HOH
HOH
1076
A
HOH
1077
3
HOH
HOH
1077
A
HOH
1078
3
HOH
HOH
1078
A
HOH
1079
3
HOH
HOH
1079
A
HOH
1080
3
HOH
HOH
1080
A
HOH
1081
3
HOH
HOH
1081
A
HOH
1082
3
HOH
HOH
1082
A
HOH
1083
3
HOH
HOH
1083
A
HOH
1084
3
HOH
HOH
1084
A
HOH
1085
3
HOH
HOH
1085
A
HOH
1086
3
HOH
HOH
1086
A
HOH
1087
3
HOH
HOH
1087
A
HOH
1088
3
HOH
HOH
1088
A
HOH
1089
3
HOH
HOH
1089
A
HOH
1090
3
HOH
HOH
1090
A
HOH
1091
3
HOH
HOH
1091
A
HOH
1092
3
HOH
HOH
1092
A
HOH
1093
3
HOH
HOH
1093
A
HOH
1094
3
HOH
HOH
1094
A
HOH
1095
3
HOH
HOH
1095
A
HOH
1096
3
HOH
HOH
1096
A
HOH
1097
3
HOH
HOH
1097
A
HOH
1098
3
HOH
HOH
1098
A
HOH
1099
3
HOH
HOH
1099
A
HOH
1100
3
HOH
HOH
1100
A
HOH
1101
3
HOH
HOH
1101
A
HOH
1102
3
HOH
HOH
1102
A
HOH
1103
3
HOH
HOH
1103
A
HOH
1104
3
HOH
HOH
1104
A
HOH
1105
3
HOH
HOH
1105
A
HOH
1106
3
HOH
HOH
1106
A
HOH
1107
3
HOH
HOH
1107
A
HOH
1108
3
HOH
HOH
1108
A
HOH
1109
3
HOH
HOH
1109
A
HOH
1110
3
HOH
HOH
1110
A
HOH
1111
3
HOH
HOH
1111
A
HOH
1112
3
HOH
HOH
1112
A
HOH
1113
3
HOH
HOH
1113
A
HOH
1114
3
HOH
HOH
1114
A
HOH
1115
3
HOH
HOH
1115
A
HOH
1116
3
HOH
HOH
1116
A
HOH
1117
3
HOH
HOH
1117
A
HOH
1118
3
HOH
HOH
1118
A
HOH
1119
3
HOH
HOH
1119
A
HOH
1120
3
HOH
HOH
1120
A
HOH
1121
3
HOH
HOH
1121
A
HOH
1122
3
HOH
HOH
1122
A
HOH
1123
3
HOH
HOH
1123
A
HOH
1124
3
HOH
HOH
1124
A
HOH
1125
3
HOH
HOH
1125
A
HOH
1126
3
HOH
HOH
1126
A
HOH
1127
3
HOH
HOH
1127
A
HOH
1128
3
HOH
HOH
1128
A
HOH
1129
3
HOH
HOH
1129
A
HOH
1130
3
HOH
HOH
1130
A
HOH
1131
3
HOH
HOH
1131
A
HOH
1132
3
HOH
HOH
1132
A
HOH
1133
3
HOH
HOH
1133
A
HOH
1134
3
HOH
HOH
1134
A
HOH
1135
3
HOH
HOH
1135
A
HOH
1136
3
HOH
HOH
1136
A
HOH
1137
3
HOH
HOH
1137
A
HOH
1138
3
HOH
HOH
1138
A
HOH
1139
3
HOH
HOH
1139
A
HOH
1140
3
HOH
HOH
1140
A
HOH
1141
3
HOH
HOH
1141
A
HOH
1142
3
HOH
HOH
1142
A
HOH
1143
3
HOH
HOH
1143
A
HOH
1144
3
HOH
HOH
1144
A
HOH
1145
3
HOH
HOH
1145
A
HOH
1146
3
HOH
HOH
1146
A
HOH
1147
3
HOH
HOH
1147
A
HOH
1148
3
HOH
HOH
1148
A
HOH
1149
3
HOH
HOH
1149
A
HOH
1150
3
HOH
HOH
1150
A
HOH
1151
3
HOH
HOH
1151
A
HOH
1152
3
HOH
HOH
1152
A
HOH
1153
3
HOH
HOH
1153
A
HOH
1154
3
HOH
HOH
1154
A
HOH
1155
3
HOH
HOH
1155
A
HOH
1156
3
HOH
HOH
1156
A
HOH
1157
3
HOH
HOH
1157
A
HOH
1158
3
HOH
HOH
1158
A
HOH
1159
3
HOH
HOH
1159
A
HOH
1160
3
HOH
HOH
1160
A
HOH
1161
3
HOH
HOH
1161
A
HOH
1162
3
HOH
HOH
1162
A
HOH
1163
3
HOH
HOH
1163
A
HOH
1164
3
HOH
HOH
1164
A
HOH
1165
3
HOH
HOH
1165
A
HOH
1166
3
HOH
HOH
1166
A
HOH
1167
3
HOH
HOH
1167
A
HOH
1168
3
HOH
HOH
1168
A
HOH
1169
3
HOH
HOH
1169
A
HOH
1170
3
HOH
HOH
1170
A
HOH
1171
3
HOH
HOH
1171
A
HOH
1172
3
HOH
HOH
1172
A
HOH
1173
3
HOH
HOH
1173
A
HOH
1174
3
HOH
HOH
1174
A
HOH
1175
3
HOH
HOH
1175
A
HOH
1176
3
HOH
HOH
1176
A
HOH
1177
3
HOH
HOH
1177
A
HOH
1178
3
HOH
HOH
1178
A
HOH
1179
3
HOH
HOH
1179
A
HOH
1180
3
HOH
HOH
1180
A
HOH
1181
3
HOH
HOH
1181
A
HOH
1182
3
HOH
HOH
1182
A
HOH
1183
3
HOH
HOH
1183
A
HOH
1184
3
HOH
HOH
1184
A
HOH
1185
3
HOH
HOH
1185
A
HOH
1186
3
HOH
HOH
1186
A
HOH
1187
3
HOH
HOH
1187
A
HOH
1188
3
HOH
HOH
1188
A
HOH
1189
3
HOH
HOH
1189
A
HOH
1190
3
HOH
HOH
1190
A
HOH
1191
3
HOH
HOH
1191
A
HOH
1192
3
HOH
HOH
1192
A
HOH
1193
3
HOH
HOH
1193
A
HOH
1194
3
HOH
HOH
1194
A
HOH
1195
3
HOH
HOH
1195
A
HOH
1196
3
HOH
HOH
1196
A
HOH
1197
3
HOH
HOH
1197
A
HOH
1198
3
HOH
HOH
1198
A
HOH
1199
3
HOH
HOH
1199
A
HOH
1200
3
HOH
HOH
1200
A
HOH
1201
3
HOH
HOH
1201
A
HOH
1202
3
HOH
HOH
1202
A
HOH
1203
3
HOH
HOH
1203
A
HOH
1204
3
HOH
HOH
1204
A
HOH
1205
3
HOH
HOH
1205
A
HOH
1206
3
HOH
HOH
1206
A
HOH
1207
3
HOH
HOH
1207
A
HOH
1208
3
HOH
HOH
1208
A
HOH
1209
3
HOH
HOH
1209
A
HOH
1210
3
HOH
HOH
1210
A
HOH
1211
3
HOH
HOH
1211
A
HOH
1212
3
HOH
HOH
1212
A
HOH
1213
3
HOH
HOH
1213
A
HOH
1214
3
HOH
HOH
1214
A
HOH
1215
3
HOH
HOH
1215
A
HOH
1216
3
HOH
HOH
1216
A
HOH
1217
3
HOH
HOH
1217
A
HOH
1218
3
HOH
HOH
1218
A
HOH
1219
3
HOH
HOH
1219
A
HOH
1220
3
HOH
HOH
1220
A
HOH
1221
3
HOH
HOH
1221
A
HOH
1222
3
HOH
HOH
1222
A
HOH
1223
3
HOH
HOH
1223
A
HOH
1224
3
HOH
HOH
1224
A
HOH
1225
3
HOH
HOH
1225
A
HOH
1226
3
HOH
HOH
1226
A
HOH
1227
3
HOH
HOH
1227
A
HOH
1228
3
HOH
HOH
1228
A
HOH
1229
3
HOH
HOH
1229
A
HOH
1230
3
HOH
HOH
1230
A
HOH
1231
3
HOH
HOH
1231
A
HOH
1232
3
HOH
HOH
1232
A
HOH
1233
3
HOH
HOH
1233
A
HOH
1234
3
HOH
HOH
1234
A
HOH
1235
3
HOH
HOH
1235
A
HOH
1236
3
HOH
HOH
1236
A
HOH
1237
3
HOH
HOH
1237
A
HOH
1238
3
HOH
HOH
1238
A
HOH
1239
3
HOH
HOH
1239
A
HOH
1240
3
HOH
HOH
1240
A
HOH
1241
3
HOH
HOH
1241
A
HOH
1242
3
HOH
HOH
1242
A
HOH
1243
3
HOH
HOH
1243
A
HOH
1244
3
HOH
HOH
1244
A
HOH
1245
3
HOH
HOH
1245
A
HOH
1246
3
HOH
HOH
1246
A
HOH
1247
3
HOH
HOH
1247
A
HOH
1248
3
HOH
HOH
1248
A
HOH
1249
3
HOH
HOH
1249
A
HOH
1250
3
HOH
HOH
1250
A
HOH
1251
3
HOH
HOH
1251
A
HOH
1252
3
HOH
HOH
1252
A
HOH
1253
3
HOH
HOH
1253
A
HOH
1254
3
HOH
HOH
1254
A
HOH
1255
3
HOH
HOH
1255
A
HOH
1256
3
HOH
HOH
1256
A
HOH
1257
3
HOH
HOH
1257
A
HOH
1258
3
HOH
HOH
1258
A
HOH
1259
3
HOH
HOH
1259
A
HOH
1260
3
HOH
HOH
1260
A
HOH
1261
3
HOH
HOH
1261
A
HOH
1262
3
HOH
HOH
1262
A
HOH
1263
3
HOH
HOH
1263
A
HOH
1264
3
HOH
HOH
1264
A
HOH
1265
3
HOH
HOH
1265
A
HOH
1266
3
HOH
HOH
1266
A
HOH
1267
3
HOH
HOH
1267
A
HOH
1268
3
HOH
HOH
1268
A
HOH
1269
3
HOH
HOH
1269
A
ACE
0
n
1
ACE
0
A
MET
1
n
2
MET
1
A
GLU
2
n
3
GLU
2
A
ASN
3
n
4
ASN
3
A
PHE
4
n
5
PHE
4
A
GLN
5
n
6
GLN
5
A
LYS
6
n
7
LYS
6
A
VAL
7
n
8
VAL
7
A
GLU
8
n
9
GLU
8
A
LYS
9
n
10
LYS
9
A
ILE
10
n
11
ILE
10
A
GLY
11
n
12
GLY
11
A
GLU
12
n
13
GLU
12
A
GLY
13
n
14
GLY
13
A
THR
14
n
15
THR
14
A
TYR
15
n
16
TYR
15
A
GLY
16
n
17
GLY
16
A
VAL
17
n
18
VAL
17
A
VAL
18
n
19
VAL
18
A
TYR
19
n
20
TYR
19
A
LYS
20
n
21
LYS
20
A
ALA
21
n
22
ALA
21
A
ARG
22
n
23
ARG
22
A
ASN
23
n
24
ASN
23
A
LYS
24
n
25
LYS
24
A
LEU
25
n
26
LEU
25
A
THR
26
n
27
THR
26
A
GLY
27
n
28
GLY
27
A
GLU
28
n
29
GLU
28
A
VAL
29
n
30
VAL
29
A
VAL
30
n
31
VAL
30
A
ALA
31
n
32
ALA
31
A
LEU
32
n
33
LEU
32
A
LYS
33
n
34
LYS
33
A
LYS
34
n
35
LYS
34
A
ILE
35
n
36
ILE
35
A
ARG
36
n
37
ARG
36
A
n
38
37
A
n
39
38
A
n
40
39
A
n
41
40
A
n
42
41
A
n
43
42
A
n
44
43
A
n
45
44
A
n
46
45
A
SER
46
n
47
SER
46
A
THR
47
n
48
THR
47
A
ALA
48
n
49
ALA
48
A
ILE
49
n
50
ILE
49
A
ARG
50
n
51
ARG
50
A
GLU
51
n
52
GLU
51
A
ILE
52
n
53
ILE
52
A
SER
53
n
54
SER
53
A
LEU
54
n
55
LEU
54
A
LEU
55
n
56
LEU
55
A
LYS
56
n
57
LYS
56
A
GLU
57
n
58
GLU
57
A
LEU
58
n
59
LEU
58
A
ASN
59
n
60
ASN
59
A
HIS
60
n
61
HIS
60
A
PRO
61
n
62
PRO
61
A
ASN
62
n
63
ASN
62
A
ILE
63
n
64
ILE
63
A
VAL
64
n
65
VAL
64
A
LYS
65
n
66
LYS
65
A
LEU
66
n
67
LEU
66
A
LEU
67
n
68
LEU
67
A
ASP
68
n
69
ASP
68
A
VAL
69
n
70
VAL
69
A
ILE
70
n
71
ILE
70
A
HIS
71
n
72
HIS
71
A
THR
72
n
73
THR
72
A
GLU
73
n
74
GLU
73
A
ASN
74
n
75
ASN
74
A
LYS
75
n
76
LYS
75
A
LEU
76
n
77
LEU
76
A
TYR
77
n
78
TYR
77
A
LEU
78
n
79
LEU
78
A
VAL
79
n
80
VAL
79
A
PHE
80
n
81
PHE
80
A
GLU
81
n
82
GLU
81
A
PHE
82
n
83
PHE
82
A
LEU
83
n
84
LEU
83
A
HIS
84
n
85
HIS
84
A
GLN
85
n
86
GLN
85
A
ASP
86
n
87
ASP
86
A
LEU
87
n
88
LEU
87
A
LYS
88
n
89
LYS
88
A
LYS
89
n
90
LYS
89
A
PHE
90
n
91
PHE
90
A
MET
91
n
92
MET
91
A
ASP
92
n
93
ASP
92
A
ALA
93
n
94
ALA
93
A
SER
94
n
95
SER
94
A
ALA
95
n
96
ALA
95
A
LEU
96
n
97
LEU
96
A
THR
97
n
98
THR
97
A
GLY
98
n
99
GLY
98
A
ILE
99
n
100
ILE
99
A
PRO
100
n
101
PRO
100
A
LEU
101
n
102
LEU
101
A
PRO
102
n
103
PRO
102
A
LEU
103
n
104
LEU
103
A
ILE
104
n
105
ILE
104
A
LYS
105
n
106
LYS
105
A
SER
106
n
107
SER
106
A
TYR
107
n
108
TYR
107
A
LEU
108
n
109
LEU
108
A
PHE
109
n
110
PHE
109
A
GLN
110
n
111
GLN
110
A
LEU
111
n
112
LEU
111
A
LEU
112
n
113
LEU
112
A
GLN
113
n
114
GLN
113
A
GLY
114
n
115
GLY
114
A
LEU
115
n
116
LEU
115
A
ALA
116
n
117
ALA
116
A
PHE
117
n
118
PHE
117
A
CYS
118
n
119
CYS
118
A
HIS
119
n
120
HIS
119
A
SER
120
n
121
SER
120
A
HIS
121
n
122
HIS
121
A
ARG
122
n
123
ARG
122
A
VAL
123
n
124
VAL
123
A
LEU
124
n
125
LEU
124
A
HIS
125
n
126
HIS
125
A
ARG
126
n
127
ARG
126
A
ASP
127
n
128
ASP
127
A
LEU
128
n
129
LEU
128
A
LYS
129
n
130
LYS
129
A
PRO
130
n
131
PRO
130
A
GLN
131
n
132
GLN
131
A
ASN
132
n
133
ASN
132
A
LEU
133
n
134
LEU
133
A
LEU
134
n
135
LEU
134
A
ILE
135
n
136
ILE
135
A
ASN
136
n
137
ASN
136
A
THR
137
n
138
THR
137
A
GLU
138
n
139
GLU
138
A
GLY
139
n
140
GLY
139
A
ALA
140
n
141
ALA
140
A
ILE
141
n
142
ILE
141
A
LYS
142
n
143
LYS
142
A
LEU
143
n
144
LEU
143
A
ALA
144
n
145
ALA
144
A
ASP
145
n
146
ASP
145
A
PHE
146
n
147
PHE
146
A
GLY
147
n
148
GLY
147
A
LEU
148
n
149
LEU
148
A
ALA
149
n
150
ALA
149
A
ARG
150
n
151
ARG
150
A
ALA
151
n
152
ALA
151
A
PHE
152
n
153
PHE
152
A
GLY
153
n
154
GLY
153
A
VAL
154
n
155
VAL
154
A
PRO
155
n
156
PRO
155
A
VAL
156
n
157
VAL
156
A
ARG
157
n
158
ARG
157
A
THR
158
n
159
THR
158
A
TYR
159
n
160
TYR
159
A
THR
160
n
161
THR
160
A
HIS
161
n
162
HIS
161
A
GLU
162
n
163
GLU
162
A
VAL
163
n
164
VAL
163
A
VAL
164
n
165
VAL
164
A
THR
165
n
166
THR
165
A
LEU
166
n
167
LEU
166
A
TRP
167
n
168
TRP
167
A
TYR
168
n
169
TYR
168
A
ARG
169
n
170
ARG
169
A
ALA
170
n
171
ALA
170
A
PRO
171
n
172
PRO
171
A
GLU
172
n
173
GLU
172
A
ILE
173
n
174
ILE
173
A
LEU
174
n
175
LEU
174
A
LEU
175
n
176
LEU
175
A
GLY
176
n
177
GLY
176
A
CYS
177
n
178
CYS
177
A
LYS
178
n
179
LYS
178
A
TYR
179
n
180
TYR
179
A
TYR
180
n
181
TYR
180
A
SER
181
n
182
SER
181
A
THR
182
n
183
THR
182
A
ALA
183
n
184
ALA
183
A
VAL
184
n
185
VAL
184
A
ASP
185
n
186
ASP
185
A
ILE
186
n
187
ILE
186
A
TRP
187
n
188
TRP
187
A
SER
188
n
189
SER
188
A
LEU
189
n
190
LEU
189
A
GLY
190
n
191
GLY
190
A
CYS
191
n
192
CYS
191
A
ILE
192
n
193
ILE
192
A
PHE
193
n
194
PHE
193
A
ALA
194
n
195
ALA
194
A
GLU
195
n
196
GLU
195
A
MET
196
n
197
MET
196
A
VAL
197
n
198
VAL
197
A
THR
198
n
199
THR
198
A
ARG
199
n
200
ARG
199
A
ARG
200
n
201
ARG
200
A
ALA
201
n
202
ALA
201
A
LEU
202
n
203
LEU
202
A
PHE
203
n
204
PHE
203
A
PRO
204
n
205
PRO
204
A
GLY
205
n
206
GLY
205
A
ASP
206
n
207
ASP
206
A
SER
207
n
208
SER
207
A
GLU
208
n
209
GLU
208
A
ILE
209
n
210
ILE
209
A
ASP
210
n
211
ASP
210
A
GLN
211
n
212
GLN
211
A
LEU
212
n
213
LEU
212
A
PHE
213
n
214
PHE
213
A
ARG
214
n
215
ARG
214
A
ILE
215
n
216
ILE
215
A
PHE
216
n
217
PHE
216
A
ARG
217
n
218
ARG
217
A
THR
218
n
219
THR
218
A
LEU
219
n
220
LEU
219
A
GLY
220
n
221
GLY
220
A
THR
221
n
222
THR
221
A
PRO
222
n
223
PRO
222
A
ASP
223
n
224
ASP
223
A
GLU
224
n
225
GLU
224
A
VAL
225
n
226
VAL
225
A
VAL
226
n
227
VAL
226
A
TRP
227
n
228
TRP
227
A
PRO
228
n
229
PRO
228
A
GLY
229
n
230
GLY
229
A
VAL
230
n
231
VAL
230
A
THR
231
n
232
THR
231
A
SER
232
n
233
SER
232
A
MET
233
n
234
MET
233
A
PRO
234
n
235
PRO
234
A
ASP
235
n
236
ASP
235
A
TYR
236
n
237
TYR
236
A
LYS
237
n
238
LYS
237
A
PRO
238
n
239
PRO
238
A
SER
239
n
240
SER
239
A
PHE
240
n
241
PHE
240
A
PRO
241
n
242
PRO
241
A
LYS
242
n
243
LYS
242
A
TRP
243
n
244
TRP
243
A
ALA
244
n
245
ALA
244
A
ARG
245
n
246
ARG
245
A
GLN
246
n
247
GLN
246
A
ASP
247
n
248
ASP
247
A
PHE
248
n
249
PHE
248
A
SER
249
n
250
SER
249
A
LYS
250
n
251
LYS
250
A
VAL
251
n
252
VAL
251
A
VAL
252
n
253
VAL
252
A
PRO
253
n
254
PRO
253
A
PRO
254
n
255
PRO
254
A
LEU
255
n
256
LEU
255
A
ASP
256
n
257
ASP
256
A
GLU
257
n
258
GLU
257
A
ASP
258
n
259
ASP
258
A
GLY
259
n
260
GLY
259
A
ARG
260
n
261
ARG
260
A
SER
261
n
262
SER
261
A
LEU
262
n
263
LEU
262
A
LEU
263
n
264
LEU
263
A
SER
264
n
265
SER
264
A
GLN
265
n
266
GLN
265
A
MET
266
n
267
MET
266
A
LEU
267
n
268
LEU
267
A
HIS
268
n
269
HIS
268
A
TYR
269
n
270
TYR
269
A
ASP
270
n
271
ASP
270
A
PRO
271
n
272
PRO
271
A
ASN
272
n
273
ASN
272
A
LYS
273
n
274
LYS
273
A
ARG
274
n
275
ARG
274
A
ILE
275
n
276
ILE
275
A
SER
276
n
277
SER
276
A
ALA
277
n
278
ALA
277
A
LYS
278
n
279
LYS
278
A
ALA
279
n
280
ALA
279
A
ALA
280
n
281
ALA
280
A
LEU
281
n
282
LEU
281
A
ALA
282
n
283
ALA
282
A
HIS
283
n
284
HIS
283
A
PRO
284
n
285
PRO
284
A
PHE
285
n
286
PHE
285
A
PHE
286
n
287
PHE
286
A
GLN
287
n
288
GLN
287
A
ASP
288
n
289
ASP
288
A
VAL
289
n
290
VAL
289
A
THR
290
n
291
THR
290
A
LYS
291
n
292
LYS
291
A
PRO
292
n
293
PRO
292
A
VAL
293
n
294
VAL
293
A
PRO
294
n
295
PRO
294
A
HIS
295
n
296
HIS
295
A
LEU
296
n
297
LEU
296
A
ARG
297
n
298
ARG
297
A
LEU
298
n
299
LEU
298
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
7
A
N
VAL
8
A
O
LYS
20
A
O
LYS
21
A
N
TYR
19
A
N
TYR
20
A
O
LEU
32
A
O
LEU
33
A
N
ALA
31
A
N
ALA
32
A
O
PHE
80
A
O
PHE
81
A
O
VAL
79
A
O
VAL
80
A
N
ASP
68
A
N
ASP
69
A
N
GLN
85
A
N
GLN
86
A
O
ILE
135
A
O
ILE
136
A
N
LEU
134
A
N
LEU
135
A
O
LYS
142
A
O
LYS
143
1
A
CA
ARG
36
A
CA
ARG
37
1
Y
1
A
C
ARG
36
A
C
ARG
37
1
Y
1
A
O
ARG
36
A
O
ARG
37
1
Y
1
A
CB
ARG
36
A
CB
ARG
37
1
Y
1
A
CG
ARG
36
A
CG
ARG
37
1
Y
1
A
CD
ARG
36
A
CD
ARG
37
1
Y
1
A
NE
ARG
36
A
NE
ARG
37
1
Y
1
A
CZ
ARG
36
A
CZ
ARG
37
1
Y
1
A
NH1
ARG
36
A
NH1
ARG
37
1
Y
1
A
NH2
ARG
36
A
NH2
ARG
37
1
Y
1
A
N
SER
46
A
N
SER
47
1
Y
1
A
CA
SER
46
A
CA
SER
47
1
Y
1
A
CB
SER
46
A
CB
SER
47
1
Y
1
A
OG
SER
46
A
OG
SER
47
1
Y
1
A
LEU
37
A
LEU
38
1
Y
1
A
ASP
38
A
ASP
39
1
Y
1
A
THR
39
A
THR
40
1
Y
1
A
GLU
40
A
GLU
41
1
Y
1
A
THR
41
A
THR
42
1
Y
1
A
GLU
42
A
GLU
43
1
Y
1
A
GLY
43
A
GLY
44
1
Y
1
A
VAL
44
A
VAL
45
1
Y
1
A
PRO
45
A
PRO
46
1
Y
1
A
GLU
2
-59.99
-4.49
1
A
LEU
25
-93.81
-93.15
1
A
ARG
126
83.23
-20.56
1
A
HIS
161
79.26
-0.59
1
A
TYR
179
-118.81
58.75
1
A
PRO
254
-108.60
52.90
25.511
BUSTER-TNT
0.212
0.178
0.182
0.182
1.55
22.7
2008
39770
39343
98.9
RANDOM
1
THROUGHOUT
0
-3
FOURIER SYNTHESIS
Engh & Huber
1.55
22.7
269
2677
27
0
2381
1.550
50.000
2R3G
39400
0.043
0.928
1
14.100
99.200
0.512
1.55
1.56
989
0.955
100.00
0.466
1.56
1.58
959
0.992
100.00
0.447
1.58
1.59
987
0.948
100.00
0.424
1.59
1.61
985
0.955
100.00
0.375
1.61
1.62
982
0.999
100.00
0.346
1.62
1.64
947
0.968
100.00
0.301
1.64
1.65
1018
0.909
100.00
0.286
1.65
1.67
949
0.937
100.00
0.272
1.67
1.69
956
0.959
100.00
0.259
1.69
1.71
1022
0.953
100.00
0.231
1.71
1.73
958
1.020
100.00
0.211
1.73
1.75
978
0.963
100.00
0.192
1.75
1.77
981
0.955
100.00
0.168
1.77
1.79
976
0.975
100.00
0.153
1.79
1.81
982
0.891
100.00
0.146
1.81
1.84
999
0.905
100.00
0.116
1.84
1.86
976
0.875
100.00
0.103
1.86
1.89
999
0.862
100.00
0.097
1.89
1.92
957
0.987
99.90
0.082
1.92
1.95
977
0.880
99.90
0.072
1.95
1.99
1002
0.837
100.00
0.066
1.99
2.02
993
0.867
100.00
0.063
2.02
2.06
984
0.917
100.00
0.059
2.06
2.10
979
0.883
100.00
0.050
2.10
2.15
992
0.854
100.00
0.048
2.15
2.20
980
0.858
100.00
0.048
2.20
2.25
992
0.971
100.00
0.043
2.25
2.32
1008
0.889
100.00
0.040
2.32
2.38
985
0.975
100.00
0.038
2.38
2.46
994
1.000
100.00
0.036
2.46
2.55
1002
0.961
100.00
0.033
2.55
2.65
1006
0.893
100.00
0.031
2.65
2.77
1003
0.923
100.00
0.027
2.77
2.92
985
0.860
99.90
0.027
2.92
3.10
1015
0.905
99.80
0.025
3.10
3.34
1008
0.897
99.10
0.024
3.34
3.68
999
0.919
98.80
0.024
3.68
4.21
995
0.946
95.90
0.024
4.21
5.30
975
0.943
93.40
0.024
5.30
50.00
926
0.939
82.50
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
data extraction
PDB
sw-help@rcsb.rutgers.edu
April. 3, 2006
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
2.000
refinement
BUSTER-TNT
Cell division protein kinase 2 (E.C.2.7.11.22)
Crystal Structure of Cyclin-Dependent Kinase 2 with inhibitor
1
N
N
2
N
N
3
N
N
A
THR
47
A
THR
48
HELX_P
A
LYS
56
A
LYS
57
1
1
10
A
LEU
87
A
LEU
88
HELX_P
A
SER
94
A
SER
95
1
2
8
A
PRO
100
A
PRO
101
HELX_P
A
HIS
121
A
HIS
122
1
3
22
A
LYS
129
A
LYS
130
HELX_P
A
GLN
131
A
GLN
132
5
4
3
A
GLY
147
A
GLY
148
HELX_P
A
GLY
153
A
GLY
154
1
5
7
A
ALA
170
A
ALA
171
HELX_P
A
LEU
175
A
LEU
176
1
6
6
A
THR
182
A
THR
183
HELX_P
A
ARG
199
A
ARG
200
1
7
18
A
SER
207
A
SER
208
HELX_P
A
GLY
220
A
GLY
221
1
8
14
A
GLY
229
A
GLY
230
HELX_P
A
MET
233
A
MET
234
5
9
5
A
ASP
247
A
ASP
248
HELX_P
A
VAL
252
A
VAL
253
1
10
6
A
ASP
256
A
ASP
257
HELX_P
A
LEU
267
A
LEU
268
1
11
12
A
SER
276
A
SER
277
HELX_P
A
ALA
282
A
ALA
283
1
12
7
A
HIS
283
A
HIS
284
HELX_P
A
GLN
287
A
GLN
288
5
13
5
covale
1.331
A
MET
1
A
N
MET
2
1_555
A
ACE
0
A
C
ACE
1
1_555
TRANSFERASE
SERINE/THREONINE-PROTEIN KINASE, CELL CYCLE, INHIBITION, CYCLIN-DEPENDENT KINASE, CANCER, ATP-binding, Cell division, Mitosis, Nucleotide-binding, Phosphorylation, Polymorphism, Transferase
A
PRO
253
A
PRO
254
1
A
PRO
254
A
PRO
255
3.71
CDK2_HUMAN
UNP
1
1
P24941
MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF
EFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYT
HEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF
PKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL
1
298
2R3G
1
298
P24941
A
1
2
299
5
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
4
A
PHE
5
A
GLU
12
A
GLU
13
A
VAL
17
A
VAL
18
A
ASN
23
A
ASN
24
A
VAL
29
A
VAL
30
A
LYS
34
A
LYS
35
A
LYS
75
A
LYS
76
A
GLU
81
A
GLU
82
A
LEU
66
A
LEU
67
A
THR
72
A
THR
73
A
GLN
85
A
GLN
86
A
ASP
86
A
ASP
87
A
LEU
133
A
LEU
134
A
ILE
135
A
ILE
136
A
ILE
141
A
ILE
142
A
LEU
143
A
LEU
144
BINDING SITE FOR RESIDUE SC9 A 501
Software
13
A
ILE
10
A
ILE
11
13
1_555
A
GLU
12
A
GLU
13
13
1_555
A
ALA
31
A
ALA
32
13
1_555
A
LYS
33
A
LYS
34
13
1_555
A
GLU
81
A
GLU
82
13
1_555
A
PHE
82
A
PHE
83
13
1_555
A
LEU
83
A
LEU
84
13
1_555
A
HIS
84
A
HIS
85
13
1_555
A
ASP
86
A
ASP
87
13
1_555
A
LYS
89
A
LYS
90
13
1_555
A
GLN
131
A
GLN
132
13
1_555
A
LEU
134
A
LEU
135
13
1_555
A
HOH
1216
C
HOH
13
1_555
19
P 21 21 21