0.019149
0.000000
0.000000
0.000000
0.019149
0.000000
0.000000
0.000000
0.004226
0.000000
0.000000
0.000000
Baker, H.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
52.223
52.223
236.657
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C6 H12 O5
164.156
alpha-L-fucopyranose
alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose
L-saccharide, alpha linking
C6 H12 O6
180.156
beta-D-galactopyranose
beta-D-galactose; D-galactose; galactose
D-saccharide, beta linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C11 H19 N O9
309.270
N-acetyl-alpha-neuraminic acid
N-acetylneuraminic acid; sialic acid; alpha-sialic acid; O-SIALIC ACID
D-saccharide, alpha linking
C4 H6 O6
150.087
S,R MESO-TARTARIC ACID
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
R
C
N
76
S
C
N
77
R
C
N
78
S
C
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
O
N
83
N
O
N
84
N
O
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
R
C
N
99
R
C
N
100
S
C
N
101
R
C
N
102
R
C
N
103
N
C
N
104
N
O
N
105
N
O
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
O
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
S
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
O
N
130
N
N
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
O
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
O
N
175
N
C
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
Y
190
N
C
Y
191
N
N
Y
192
N
C
Y
193
N
C
Y
194
N
N
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
S
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
N
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
S
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
R
C
N
299
R
C
N
300
R
C
N
301
S
C
N
302
R
C
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
N
N
307
N
O
N
308
N
O
N
309
N
O
N
310
N
O
N
311
N
O
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
N
356
N
C
N
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
N
C
N
373
N
O
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
C
N
383
R
C
N
384
N
C
N
385
S
C
N
386
R
C
N
387
R
C
N
388
R
C
N
389
R
C
N
390
N
C
N
391
N
C
N
392
N
C
N
393
N
N
N
394
N
O
N
395
N
O
N
396
N
O
N
397
N
O
N
398
N
O
N
399
N
O
N
400
N
O
N
401
N
O
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
O
N
423
N
O
N
424
N
C
N
425
S
C
N
426
N
O
N
427
R
C
N
428
N
O
N
429
N
C
N
430
N
O
N
431
N
O
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
N
N
439
S
C
N
440
N
C
N
441
N
O
N
442
R
C
N
443
N
O
N
444
N
C
N
445
N
O
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
N
N
456
S
C
N
457
N
C
N
458
N
O
N
459
N
C
Y
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
Y
464
N
C
Y
465
N
C
N
466
N
O
N
467
N
O
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
N
N
480
S
C
N
481
N
C
N
482
N
O
N
483
N
C
N
484
N
C
N
485
N
C
N
486
N
O
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
Y
187
N
sing
Y
188
N
doub
Y
189
N
doub
N
190
N
sing
Y
191
N
sing
N
192
N
sing
Y
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
doub
N
332
N
sing
Y
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
doub
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
doub
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
Y
449
N
doub
Y
450
N
sing
Y
451
N
sing
N
452
N
sing
Y
453
N
doub
N
454
N
sing
Y
455
N
doub
N
456
N
sing
Y
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
doub
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
374
1298
1308
10.1016/j.jmb.2007.09.091
17996251
Crystal structures of the staphylococcal toxin SSL5 in complex with sialyl Lewis X reveal a conserved binding site that shares common features with viral and bacterial sialic acid binding proteins
2007
10.2210/pdb2r61/pdb
pdb_00002r61
110
1
mirrors
IMAGE PLATE
2006-11-23
MAR scanner 345 mm plate
VariMax-HF Mirror
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU MICROMAX-007 HF
24366.910
Exotoxin 3
UNP residues 31-234
1
man
polymer
820.744
N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
35.453
CHLORIDE ION
1
syn
non-polymer
150.087
S,R MESO-TARTARIC ACID
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
59
nat
water
superantigen-like protein SSL5
Sialyl-Lewis X antigen, beta anomer
no
no
GPGSSEHKAKYENVTKDIFDLRDYYSGASKELKNVTGYRYSKGGKHYLIFDAHQAFTRIQIFGKDIERLKARKNPGLDIF
VVKEAENRNGTVFSYGGVTKKNQGAYYDYLNAPKFVIKKEVDAGVYTHVKRHYIYKEEVSLKELDFKLRQYLIQNFDLYK
KFPKDSKIKVIMKDGGYYTFELNKKLQPHRMSDVIDGRNIEKMEANIR
GPGSSEHKAKYENVTKDIFDLRDYYSGASKELKNVTGYRYSKGGKHYLIFDAHQAFTRIQIFGKDIERLKARKNPGLDIF
VVKEAENRNGTVFSYGGVTKKNQGAYYDYLNAPKFVIKKEVDAGVYTHVKRHYIYKEEVSLKELDFKLRQYLIQNFDLYK
KFPKDSKIKVIMKDGGYYTFELNKKLQPHRMSDVIDGRNIEKMEANIR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Staphylococcus
Gl10
Escherichia
sample
ssl5
1280
Staphylococcus aureus
562
Escherichia coli
plasmid
pET32a.3C
1
3.31
62.85
VAPOR DIFFUSION, SITTING DROP
7.4
20% PEG 3340, 0.2M disodium tartrate, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
atom_site
pdbx_unobs_or_zero_occ_atoms
pdbx_validate_chiral
software
struct_conn
atom_site
chem_comp
entity
entity_name_com
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_molecule_features
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_unobs_or_zero_occ_atoms
repository
Initial release
Carbohydrate remediation
repository
Remediation
Advisory
Version format compliance
Advisory
Atomic model
Data collection
Derived calculations
Refinement description
Atomic model
Data collection
Database references
Derived calculations
Structure summary
Advisory
Data collection
Database references
Refinement description
Structure summary
1
0
2007-11-27
1
1
2011-07-13
2
0
2019-07-10
3
0
2020-07-29
3
1
2023-10-25
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_software.version
_struct_conn.pdbx_leaving_atom_flag
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
X
NAG
603
n
B
NAG
1
X
GAL
602
n
B
GAL
2
X
SIA
601
n
B
SIA
3
X
FUC
604
n
B
FUC
4
LFucpa
a-L-fucopyranose
a-L-Fucp
Fuc
DGalpb
b-D-galactopyranose
b-D-Galp
Gal
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
DNeup5Aca
N-acetyl-a-D-neuraminic acid
a-D-Neup5Ac
Neu5Ac
SSL5
SSL5 complexed with sialyl Lewis X at pH 4.6
RCSB
Y
PDBJ
2007-09-05
REL
REL
oligosaccharide
DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-ROH
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/4,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a3-b1_a4-c1_c3-d2
2
PDB2Glycan
1.1.0
WURCS
[][b-D-GlcpNAc]{[(3+1)][a-L-Fucp]{}[(4+1)][b-D-Galp]{[(3+2)][a-D-Neup5Ac]{}}}
2
PDB-CARE
LINUCS
C1
O4
GAL
NAG
2
1
2
O1
HO4
sing
C2
O3
SIA
GAL
3
2
2
O2
HO3
sing
C1
O3
FUC
NAG
4
1
2
O1
HO3
sing
n
n
n
n
CL
CHLORIDE ION
SRT
S,R MESO-TARTARIC ACID
GOL
GLYCEROL
HOH
water
THE TETRASACCHARIDE SIALYL-LEWIS X IS PRESENT AS A LIGAND
IN THIS STRUCTURE AND IS NOT COVALENTLY BOUND TO THE
PROTEIN MOLECULE.
THE CONFLICTS BETWEEN THE SEQUENCE FOR THIS STRUCTURE AND
THE DATABASE SEQUENCE ARISE FROM THE ALLELIC VARIATION
BETWEEN STAPHYLOCOCCUS AUREUS STRAINS SEEN FOR SOME OF
THESE SUPERANTIGEN-LIKE PROTEINS.
1M4V
PDB ENTRY 1M4V
PDB
experimental model
Antigen
oligosaccharide with branches
Sialyl-Lewis X antigen, beta anomer
Oligosaccharide
CL
205
3
CL
CL
205
A
SRT
206
4
SRT
SRT
206
A
GOL
207
5
GOL
GOL
207
A
HOH
208
6
HOH
HOH
605
A
HOH
209
6
HOH
HOH
606
A
HOH
210
6
HOH
HOH
607
A
HOH
211
6
HOH
HOH
608
A
HOH
212
6
HOH
HOH
609
A
HOH
213
6
HOH
HOH
610
A
HOH
214
6
HOH
HOH
611
A
HOH
215
6
HOH
HOH
612
A
HOH
216
6
HOH
HOH
613
A
HOH
217
6
HOH
HOH
614
A
HOH
218
6
HOH
HOH
615
A
HOH
219
6
HOH
HOH
616
A
HOH
220
6
HOH
HOH
617
A
HOH
221
6
HOH
HOH
618
A
HOH
222
6
HOH
HOH
619
A
HOH
223
6
HOH
HOH
620
A
HOH
224
6
HOH
HOH
621
A
HOH
225
6
HOH
HOH
622
A
HOH
226
6
HOH
HOH
623
A
HOH
227
6
HOH
HOH
624
A
HOH
228
6
HOH
HOH
625
A
HOH
229
6
HOH
HOH
626
A
HOH
230
6
HOH
HOH
627
A
HOH
231
6
HOH
HOH
628
A
HOH
232
6
HOH
HOH
629
A
HOH
233
6
HOH
HOH
630
A
HOH
234
6
HOH
HOH
631
A
HOH
235
6
HOH
HOH
632
A
HOH
236
6
HOH
HOH
633
A
HOH
237
6
HOH
HOH
634
A
HOH
238
6
HOH
HOH
635
A
HOH
239
6
HOH
HOH
636
A
HOH
240
6
HOH
HOH
637
A
HOH
241
6
HOH
HOH
638
A
HOH
242
6
HOH
HOH
639
A
HOH
243
6
HOH
HOH
640
A
HOH
244
6
HOH
HOH
641
A
HOH
245
6
HOH
HOH
642
A
HOH
246
6
HOH
HOH
643
A
HOH
247
6
HOH
HOH
644
A
HOH
248
6
HOH
HOH
645
A
HOH
249
6
HOH
HOH
646
A
HOH
250
6
HOH
HOH
647
A
HOH
251
6
HOH
HOH
648
A
HOH
252
6
HOH
HOH
649
A
HOH
253
6
HOH
HOH
650
A
HOH
254
6
HOH
HOH
651
A
HOH
255
6
HOH
HOH
652
A
HOH
256
6
HOH
HOH
653
A
HOH
257
6
HOH
HOH
654
A
HOH
258
6
HOH
HOH
655
A
HOH
259
6
HOH
HOH
656
A
HOH
260
6
HOH
HOH
657
A
HOH
261
6
HOH
HOH
658
A
HOH
262
6
HOH
HOH
659
A
HOH
263
6
HOH
HOH
660
A
HOH
13
6
HOH
HOH
661
A
HOH
115
6
HOH
HOH
662
A
HOH
116
6
HOH
HOH
663
A
2.750
2.750
35.070
35.070
Phaser MODE: MR_AUTO
n
1
-3
A
n
2
-2
A
n
3
-1
A
n
4
0
A
n
5
1
A
n
6
2
A
n
7
3
A
n
8
4
A
n
9
5
A
n
10
6
A
n
11
7
A
GLU
8
n
12
GLU
8
A
ASN
9
n
13
ASN
9
A
VAL
10
n
14
VAL
10
A
THR
11
n
15
THR
11
A
LYS
12
n
16
LYS
12
A
ASP
13
n
17
ASP
13
A
ILE
14
n
18
ILE
14
A
PHE
15
n
19
PHE
15
A
ASP
16
n
20
ASP
16
A
LEU
17
n
21
LEU
17
A
ARG
18
n
22
ARG
18
A
ASP
19
n
23
ASP
19
A
TYR
20
n
24
TYR
20
A
TYR
21
n
25
TYR
21
A
SER
22
n
26
SER
22
A
GLY
23
n
27
GLY
23
A
ALA
24
n
28
ALA
24
A
SER
25
n
29
SER
25
A
LYS
26
n
30
LYS
26
A
GLU
27
n
31
GLU
27
A
LEU
28
n
32
LEU
28
A
LYS
29
n
33
LYS
29
A
ASN
30
n
34
ASN
30
A
VAL
31
n
35
VAL
31
A
THR
32
n
36
THR
32
A
GLY
33
n
37
GLY
33
A
TYR
34
n
38
TYR
34
A
ARG
35
n
39
ARG
35
A
TYR
36
n
40
TYR
36
A
SER
37
n
41
SER
37
A
LYS
38
n
42
LYS
38
A
GLY
39
n
43
GLY
39
A
GLY
40
n
44
GLY
40
A
LYS
41
n
45
LYS
41
A
HIS
42
n
46
HIS
42
A
TYR
43
n
47
TYR
43
A
LEU
44
n
48
LEU
44
A
ILE
45
n
49
ILE
45
A
PHE
46
n
50
PHE
46
A
ASP
47
n
51
ASP
47
A
ALA
48
n
52
ALA
48
A
HIS
49
n
53
HIS
49
A
GLN
50
n
54
GLN
50
A
ALA
51
n
55
ALA
51
A
PHE
52
n
56
PHE
52
A
THR
53
n
57
THR
53
A
ARG
54
n
58
ARG
54
A
ILE
55
n
59
ILE
55
A
GLN
56
n
60
GLN
56
A
ILE
57
n
61
ILE
57
A
PHE
58
n
62
PHE
58
A
GLY
59
n
63
GLY
59
A
LYS
60
n
64
LYS
60
A
ASP
61
n
65
ASP
61
A
ILE
62
n
66
ILE
62
A
GLU
63
n
67
GLU
63
A
ARG
64
n
68
ARG
64
A
LEU
65
n
69
LEU
65
A
LYS
66
n
70
LYS
66
A
ALA
67
n
71
ALA
67
A
ARG
68
n
72
ARG
68
A
LYS
69
n
73
LYS
69
A
ASN
70
n
74
ASN
70
A
PRO
71
n
75
PRO
71
A
GLY
72
n
76
GLY
72
A
LEU
73
n
77
LEU
73
A
ASP
74
n
78
ASP
74
A
ILE
75
n
79
ILE
75
A
PHE
76
n
80
PHE
76
A
VAL
77
n
81
VAL
77
A
VAL
78
n
82
VAL
78
A
LYS
79
n
83
LYS
79
A
GLU
80
n
84
GLU
80
A
ALA
81
n
85
ALA
81
A
GLU
82
n
86
GLU
82
A
ASN
83
n
87
ASN
83
A
ARG
84
n
88
ARG
84
A
n
89
85
A
n
90
86
A
THR
87
n
91
THR
87
A
VAL
88
n
92
VAL
88
A
PHE
89
n
93
PHE
89
A
SER
90
n
94
SER
90
A
TYR
91
n
95
TYR
91
A
GLY
92
n
96
GLY
92
A
GLY
93
n
97
GLY
93
A
VAL
94
n
98
VAL
94
A
THR
95
n
99
THR
95
A
LYS
96
n
100
LYS
96
A
LYS
97
n
101
LYS
97
A
ASN
98
n
102
ASN
98
A
GLN
99
n
103
GLN
99
A
GLY
100
n
104
GLY
100
A
ALA
101
n
105
ALA
101
A
TYR
102
n
106
TYR
102
A
TYR
103
n
107
TYR
103
A
ASP
104
n
108
ASP
104
A
TYR
105
n
109
TYR
105
A
LEU
106
n
110
LEU
106
A
ASN
107
n
111
ASN
107
A
ALA
108
n
112
ALA
108
A
PRO
109
n
113
PRO
109
A
LYS
110
n
114
LYS
110
A
PHE
111
n
115
PHE
111
A
VAL
112
n
116
VAL
112
A
ILE
113
n
117
ILE
113
A
LYS
114
n
118
LYS
114
A
LYS
115
n
119
LYS
115
A
GLU
116
n
120
GLU
116
A
VAL
117
n
121
VAL
117
A
ASP
118
n
122
ASP
118
A
ALA
119
n
123
ALA
119
A
GLY
120
n
124
GLY
120
A
VAL
121
n
125
VAL
121
A
TYR
122
n
126
TYR
122
A
THR
123
n
127
THR
123
A
HIS
124
n
128
HIS
124
A
VAL
125
n
129
VAL
125
A
LYS
126
n
130
LYS
126
A
ARG
127
n
131
ARG
127
A
HIS
128
n
132
HIS
128
A
TYR
129
n
133
TYR
129
A
ILE
130
n
134
ILE
130
A
TYR
131
n
135
TYR
131
A
LYS
132
n
136
LYS
132
A
GLU
133
n
137
GLU
133
A
GLU
134
n
138
GLU
134
A
VAL
135
n
139
VAL
135
A
SER
136
n
140
SER
136
A
LEU
137
n
141
LEU
137
A
LYS
138
n
142
LYS
138
A
GLU
139
n
143
GLU
139
A
LEU
140
n
144
LEU
140
A
ASP
141
n
145
ASP
141
A
PHE
142
n
146
PHE
142
A
LYS
143
n
147
LYS
143
A
LEU
144
n
148
LEU
144
A
ARG
145
n
149
ARG
145
A
GLN
146
n
150
GLN
146
A
TYR
147
n
151
TYR
147
A
LEU
148
n
152
LEU
148
A
ILE
149
n
153
ILE
149
A
GLN
150
n
154
GLN
150
A
ASN
151
n
155
ASN
151
A
PHE
152
n
156
PHE
152
A
ASP
153
n
157
ASP
153
A
LEU
154
n
158
LEU
154
A
TYR
155
n
159
TYR
155
A
LYS
156
n
160
LYS
156
A
LYS
157
n
161
LYS
157
A
PHE
158
n
162
PHE
158
A
PRO
159
n
163
PRO
159
A
LYS
160
n
164
LYS
160
A
ASP
161
n
165
ASP
161
A
SER
162
n
166
SER
162
A
LYS
163
n
167
LYS
163
A
ILE
164
n
168
ILE
164
A
LYS
165
n
169
LYS
165
A
VAL
166
n
170
VAL
166
A
ILE
167
n
171
ILE
167
A
MET
168
n
172
MET
168
A
LYS
169
n
173
LYS
169
A
ASP
170
n
174
ASP
170
A
GLY
171
n
175
GLY
171
A
GLY
172
n
176
GLY
172
A
TYR
173
n
177
TYR
173
A
TYR
174
n
178
TYR
174
A
THR
175
n
179
THR
175
A
PHE
176
n
180
PHE
176
A
GLU
177
n
181
GLU
177
A
LEU
178
n
182
LEU
178
A
ASN
179
n
183
ASN
179
A
LYS
180
n
184
LYS
180
A
LYS
181
n
185
LYS
181
A
LEU
182
n
186
LEU
182
A
GLN
183
n
187
GLN
183
A
PRO
184
n
188
PRO
184
A
HIS
185
n
189
HIS
185
A
ARG
186
n
190
ARG
186
A
MET
187
n
191
MET
187
A
SER
188
n
192
SER
188
A
ASP
189
n
193
ASP
189
A
VAL
190
n
194
VAL
190
A
ILE
191
n
195
ILE
191
A
ASP
192
n
196
ASP
192
A
GLY
193
n
197
GLY
193
A
ARG
194
n
198
ARG
194
A
ASN
195
n
199
ASN
195
A
ILE
196
n
200
ILE
196
A
GLU
197
n
201
GLU
197
A
LYS
198
n
202
LYS
198
A
MET
199
n
203
MET
199
A
GLU
200
n
204
GLU
200
A
ALA
201
n
205
ALA
201
A
ASN
202
n
206
ASN
202
A
ILE
203
n
207
ILE
203
A
ARG
204
n
208
ARG
204
A
2.1932
2.1944
1.9455
7.3972
6.5135
9.1837
0.0439
0.0545
0.4121
0.1487
-0.4436
0.4456
-0.6143
-0.4818
0.3997
0.3730
0.1331
0.0292
0.4032
0.1559
0.1191
refined
5.3300
1.3970
30.7560
X-RAY DIFFRACTION
7.0195
-3.7469
-2.0353
15.7255
0.0385
2.1128
-0.4269
1.1273
0.4364
-0.6081
0.4184
-0.8834
-0.5446
-0.0872
0.0085
0.4143
-0.0091
0.0133
0.6577
0.0325
0.1085
refined
7.3070
-5.0090
12.5790
X-RAY DIFFRACTION
5.7776
2.2649
-2.1521
4.3649
0.5575
5.7002
0.0888
0.8523
0.5128
-0.8875
0.0387
-0.0519
-0.3797
0.3168
-0.1275
0.3227
0.0158
-0.0374
0.6012
0.0631
0.0222
refined
11.1330
-7.3620
18.7320
X-RAY DIFFRACTION
2.2706
0.1375
-0.1987
3.3822
0.5418
1.8701
0.1185
-0.0816
0.1485
0.1397
0.0603
-0.0833
-0.1378
-0.0376
-0.1788
0.2589
0.0203
-0.0097
0.3652
0.0476
-0.0342
refined
8.6120
-8.3280
39.6300
X-RAY DIFFRACTION
A
8
A
12
A
36
A
40
X-RAY DIFFRACTION
1
A
37
A
41
A
53
A
57
X-RAY DIFFRACTION
2
A
54
A
58
A
84
A
88
X-RAY DIFFRACTION
3
A
87
A
91
A
204
A
208
X-RAY DIFFRACTION
4
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
SER
90
A
O
SER
94
A
N
GLN
56
A
N
GLN
60
A
O
ILE
57
A
O
ILE
61
A
N
HIS
42
A
N
HIS
46
A
O
ILE
45
A
O
ILE
49
A
N
TYR
34
A
N
TYR
38
A
N
LEU
28
A
N
LEU
32
A
O
ILE
75
A
O
ILE
79
A
N
ASP
74
A
N
ASP
78
A
O
THR
95
A
O
THR
99
A
O
LYS
126
A
O
LYS
130
A
N
PHE
111
A
N
PHE
115
A
N
LYS
114
A
N
LYS
118
A
O
ALA
201
A
O
ALA
205
A
O
GLU
200
A
O
GLU
204
A
N
LYS
165
A
N
LYS
169
A
N
VAL
166
A
N
VAL
170
A
O
TYR
174
A
O
TYR
178
A
N
VAL
135
A
N
VAL
139
A
O
ILE
191
A
O
ILE
195
1
A
CD
LYS
38
A
CD
LYS
42
0
Y
1
A
CE
LYS
38
A
CE
LYS
42
0
Y
1
A
NZ
LYS
38
A
NZ
LYS
42
0
Y
1
A
GLY
-3
A
GLY
1
1
Y
1
A
PRO
-2
A
PRO
2
1
Y
1
A
GLY
-1
A
GLY
3
1
Y
1
A
SER
0
A
SER
4
1
Y
1
A
SER
1
A
SER
5
1
Y
1
A
GLU
2
A
GLU
6
1
Y
1
A
HIS
3
A
HIS
7
1
Y
1
A
LYS
4
A
LYS
8
1
Y
1
A
ALA
5
A
ALA
9
1
Y
1
A
LYS
6
A
LYS
10
1
Y
1
A
TYR
7
A
TYR
11
1
Y
1
A
ASN
85
A
ASN
89
1
Y
1
A
GLY
86
A
GLY
90
1
Y
1
A
A
CG
CD
LYS
LYS
38
38
-0.215
0.034
1.520
1.305
N
1
A
ASN
9
-105.89
64.42
1
A
ASN
30
38.23
42.19
1
A
PHE
46
-112.75
-87.53
1
A
ALA
67
-23.64
-47.82
1
A
ARG
68
-149.97
-68.97
1
A
ALA
81
103.46
160.31
1
A
ASN
83
-94.66
-99.64
1
A
ASP
104
-133.61
-100.38
1
A
VAL
117
-141.12
-151.54
1
A
ASP
118
-53.40
72.26
1
A
LYS
160
44.98
-127.34
1
A
ASP
161
-77.41
23.08
16.542
-0.010
0.000
0.000
-0.010
0.000
0.02
0.926
0.868
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.26859
0.20949
0.21216
2.750
35.070
439
8789
4.800
99.970
22.525
0.250
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.586
0.336
0.800
0.800
1.200
PDB ENTRY 1M4V
MAXIMUM LIKELIHOOD
MASK
2.750
35.070
59
1761
73
0
1629
0.017
0.022
1733
1.744
2.002
2317
7.650
5.000
193
36.676
23.647
85
19.933
15.000
320
25.588
15.000
11
0.115
0.200
250
0.005
0.020
1271
0.226
0.200
631
0.329
0.200
1122
0.137
0.200
84
0.195
0.200
26
0.107
0.200
8
0.628
1.500
990
1.064
2.000
1554
1.852
3.000
831
2.881
4.500
763
0.359
0.281
2.821
28
604
632
20
100.000
2.750
59.164
2R61
9300
0.129
0.129
1
5.000
7.400
99.900
0.484
2.75
2.90
1.5
10136
1301
0.484
1
7.80
100.00
data reduction
A.G.W. Leslie
andrew@mrc-lmb.cam.ac.uk
http://www.mrc-lmb.cam.ac.uk/harry/mosflm/
MOSFLM
package
data scaling
Phil Evans
pre@mrc-lmb.cam.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/INDEX.html
SCALA
other
phasing
R. J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
other
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
5.3.0037
data extraction
PDB
sw-help@rcsb.rutgers.edu
July 2, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.000
N
Crystal structure of the Staphylococcal superantigen-like protein SSL5 in complex with sialyl-Lewis X at pH 7.4
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
THR
11
A
THR
15
HELX_P
A
SER
22
A
SER
26
1
1
12
A
PHE
58
A
PHE
62
HELX_P
A
GLU
63
A
GLU
67
1
2
6
A
LEU
137
A
LEU
141
HELX_P
A
ASP
153
A
ASP
157
1
3
17
A
GLN
183
A
GLN
187
HELX_P
A
MET
187
A
MET
191
5
4
5
covale
1.340
both
B
NAG
1
B
O4
NAG
1_555
B
GAL
2
B
C1
GAL
1_555
covale
1.325
both
B
NAG
1
B
O3
NAG
1_555
B
FUC
4
B
C1
FUC
1_555
covale
1.383
both
B
GAL
2
B
O3
GAL
1_555
B
SIA
3
B
C2
SIA
1_555
SUGAR BINDING PROTEIN
SSL5, superantigen-like, sialyl Lewis X, sialic acid binding, CHIPS, SUGAR BINDING PROTEIN
Q9ZFS6_STAAU
UNP
1
31
Q9ZFS6
SEHESKYENVTKDIFDLRDYYSRASKELKNVTGYRYSKGGKHYLIFDKNRKFTRIQIFGKDIERIKKRKNPGLDIFVVKE
AENRNGTVYSYGGVTKKNQGAYYDYLSAPRFVIKKEVGAGVSVHVKRYYIYKEEISLKELDFKLRQYLIQDFDLYKKFPK
ASKIKVTMKDGGYYTFELNKKLQTNRMSDVIDGRNIEKIEANIR
31
234
2R61
1
204
Q9ZFS6
A
1
5
208
1
expression tag
GLY
-3
2R61
A
Q9ZFS6
UNP
1
1
expression tag
PRO
-2
2R61
A
Q9ZFS6
UNP
2
1
expression tag
GLY
-1
2R61
A
Q9ZFS6
UNP
3
1
expression tag
SER
0
2R61
A
Q9ZFS6
UNP
4
1
GLU
SEE REMARK 999
LYS
4
2R61
A
Q9ZFS6
UNP
34
8
1
SER
SEE REMARK 999
ALA
5
2R61
A
Q9ZFS6
UNP
35
9
1
ARG
SEE REMARK 999
GLY
23
2R61
A
Q9ZFS6
UNP
53
27
1
LYS
SEE REMARK 999
ALA
48
2R61
A
Q9ZFS6
UNP
78
52
1
ASN
SEE REMARK 999
HIS
49
2R61
A
Q9ZFS6
UNP
79
53
1
ARG
SEE REMARK 999
GLN
50
2R61
A
Q9ZFS6
UNP
80
54
1
LYS
SEE REMARK 999
ALA
51
2R61
A
Q9ZFS6
UNP
81
55
1
ILE
SEE REMARK 999
LEU
65
2R61
A
Q9ZFS6
UNP
95
69
1
LYS
SEE REMARK 999
ALA
67
2R61
A
Q9ZFS6
UNP
97
71
1
TYR
SEE REMARK 999
PHE
89
2R61
A
Q9ZFS6
UNP
119
93
1
SER
SEE REMARK 999
ASN
107
2R61
A
Q9ZFS6
UNP
137
111
1
ARG
SEE REMARK 999
LYS
110
2R61
A
Q9ZFS6
UNP
140
114
1
GLY
SEE REMARK 999
ASP
118
2R61
A
Q9ZFS6
UNP
148
122
1
SER
SEE REMARK 999
TYR
122
2R61
A
Q9ZFS6
UNP
152
126
1
VAL
SEE REMARK 999
THR
123
2R61
A
Q9ZFS6
UNP
153
127
1
TYR
SEE REMARK 999
HIS
128
2R61
A
Q9ZFS6
UNP
158
132
1
ILE
SEE REMARK 999
VAL
135
2R61
A
Q9ZFS6
UNP
165
139
1
ASP
SEE REMARK 999
ASN
151
2R61
A
Q9ZFS6
UNP
181
155
1
ALA
SEE REMARK 999
ASP
161
2R61
A
Q9ZFS6
UNP
191
165
1
THR
SEE REMARK 999
ILE
167
2R61
A
Q9ZFS6
UNP
197
171
1
THR
SEE REMARK 999
PRO
184
2R61
A
Q9ZFS6
UNP
214
188
1
ASN
SEE REMARK 999
HIS
185
2R61
A
Q9ZFS6
UNP
215
189
1
ILE
SEE REMARK 999
MET
199
2R61
A
Q9ZFS6
UNP
229
203
6
5
2
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
89
A
PHE
93
A
TYR
91
A
TYR
95
A
ARG
54
A
ARG
58
A
ILE
57
A
ILE
61
A
HIS
42
A
HIS
46
A
ILE
45
A
ILE
49
A
LYS
26
A
LYS
30
A
SER
37
A
SER
41
A
LYS
69
A
LYS
73
A
VAL
77
A
VAL
81
A
VAL
94
A
VAL
98
A
LYS
96
A
LYS
100
A
GLY
120
A
GLY
124
A
ARG
127
A
ARG
131
A
LYS
110
A
LYS
114
A
VAL
117
A
VAL
121
A
ILE
196
A
ILE
200
A
ILE
203
A
ILE
207
A
LYS
163
A
LYS
167
A
MET
168
A
MET
172
A
TYR
173
A
TYR
177
A
GLU
177
A
GLU
181
A
GLU
134
A
GLU
138
A
SER
136
A
SER
140
A
VAL
190
A
VAL
194
A
ASP
192
A
ASP
196
96
P 43 21 2