0.009244
0.000000
0.000000
0.000000
0.009244
0.000000
0.000000
0.000000
0.006582
0.00000
0.00000
0.00000
Kumar, M.
Prasad, B.V.V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
108.175
108.175
151.924
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C6 H10 N3 O4 P S
251.200
n
1-thiophosphono-L-histidine
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
P
N
274
N
O
N
275
N
O
N
276
N
O
N
277
N
O
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
N
Y
301
N
C
Y
302
N
N
N
303
N
C
N
304
N
O
N
305
R
P
N
306
N
S
N
307
N
O
N
308
N
O
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
O
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
R
C
N
339
N
O
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
N
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
N
389
N
O
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
N
407
N
C
N
408
N
C
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
Y
287
N
sing
Y
288
N
doub
N
289
N
sing
Y
290
N
sing
N
291
N
sing
Y
292
N
sing
Y
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
Y
346
N
doub
Y
347
N
sing
Y
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
Y
374
N
doub
Y
375
N
sing
Y
376
N
sing
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
US
J.Virol.
JOVIAM
0825
0022-538X
81
12272
12284
10.1128/JVI.00984-07
17804496
Crystallographic and Biochemical Analysis of Rotavirus NSP2 with Nucleotides Reveals a Nucleoside Diphosphate Kinase-Like Activity
2007
UK
Nature
NATUAS
0006
0028-0836
417
311
315
10.1038/417311a
12015608
Rotavirus protein involved in genome replication and packaging exhibits a HIT-like fold
2002
10.2210/pdb2r7c/pdb
pdb_00002r7c
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
ADSC914_DETECTOR_DIMENSIONS=3072 3072
CCD
2005-09-21
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
0.9793990
1.0
19-ID
APS
0.9793990
SYNCHROTRON
APS BEAMLINE 19-ID
36713.297
Non-structural RNA-binding protein 35
1
man
polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
18.015
water
15
nat
water
NSP2, NS35, NCVP3
no
yes
MAELACFCYPHLENDSYKFIPFNNLAIKAMLTAKVDKKDMDKFYDSIIYGIAPPPQFKKRYNTNDNSRGMNFETIMFTKV
AMLICEALNSLKVTQANVSNVLSRVVSIRHLENLVIRKENPQDILFHSKDLLLKSTLIAIGQSKEIETTITAEGGEIVFQ
NAAFTMWKLTYLEHQLMPILDQNFIEYKVTLNEDKPISDVHVKELVAELRWQYNKFAVITHGKG(PSH)YRIVKYSSVAN
HADRVYATFKSNVKTGVNNDFNLLDQRIIWQNWYAFTSSMKQGNTLDVCKRLLFQKMKPEKNPFKGLSTDRKMDEVSQVG
V
MAELACFCYPHLENDSYKFIPFNNLAIKAMLTAKVDKKDMDKFYDSIIYGIAPPPQFKKRYNTNDNSRGMNFETIMFTKV
AMLICEALNSLKVTQANVSNVLSRVVSIRHLENLVIRKENPQDILFHSKDLLLKSTLIAIGQSKEIETTITAEGGEIVFQ
NAAFTMWKLTYLEHQLMPILDQNFIEYKVTLNEDKPISDVHVKELVAELRWQYNKFAVITHGKGHYRIVKYSSVANHADR
VYATFKSNVKTGVNNDFNLLDQRIIWQNWYAFTSSMKQGNTLDVCKRLLFQKMKPEKNPFKGLSTDRKMDEVSQVGV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Rotavirus
Rotavirus A
Ramig
Escherichia
sample
S8, SEGMENT 8
36435
Simian 11 rotavirus (serotype 3 / strain SA11-Ramig)
562
Escherichia coli
SG13009
PLASMID
pQE60
1
3.03
59.36
VAPOR DIFFUSION, HANGING DROP
7.5
6-8% PEG 10000, 20mM Tris-HCl pH 7.5, 10-15mM nucleotide, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
Data collection
1
0
2007-10-23
1
1
2011-07-13
1
2
2023-10-25
1
3
2023-11-15
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
Same native protein
Same protein with H225A mutation
Same protein with H225A mutation with AMPPNP
Same protein with H225A mutation with ATP-gS
RCSB
Y
PDBJ
2007-09-07
REL
REL
PO4
PHOSPHATE ION
HOH
water
1L9V
PDB ENTRY 1l9v
PDB
experimental model
PO4
1
2
PO4
PO4
318
A
HOH
1
3
HOH
HOH
319
A
HOH
2
3
HOH
HOH
320
A
HOH
3
3
HOH
HOH
321
A
HOH
4
3
HOH
HOH
322
A
HOH
5
3
HOH
HOH
323
A
HOH
6
3
HOH
HOH
324
A
HOH
7
3
HOH
HOH
325
A
HOH
8
3
HOH
HOH
326
A
HOH
9
3
HOH
HOH
327
A
HOH
10
3
HOH
HOH
328
A
HOH
11
3
HOH
HOH
329
A
HOH
12
3
HOH
HOH
330
A
HOH
13
3
HOH
HOH
331
A
HOH
14
3
HOH
HOH
332
A
HOH
15
3
HOH
HOH
333
A
n
1
1
A
ALA
2
n
2
ALA
2
A
GLU
3
n
3
GLU
3
A
LEU
4
n
4
LEU
4
A
ALA
5
n
5
ALA
5
A
CYS
6
n
6
CYS
6
A
PHE
7
n
7
PHE
7
A
CYS
8
n
8
CYS
8
A
TYR
9
n
9
TYR
9
A
PRO
10
n
10
PRO
10
A
HIS
11
n
11
HIS
11
A
LEU
12
n
12
LEU
12
A
GLU
13
n
13
GLU
13
A
ASN
14
n
14
ASN
14
A
ASP
15
n
15
ASP
15
A
SER
16
n
16
SER
16
A
TYR
17
n
17
TYR
17
A
LYS
18
n
18
LYS
18
A
PHE
19
n
19
PHE
19
A
ILE
20
n
20
ILE
20
A
PRO
21
n
21
PRO
21
A
PHE
22
n
22
PHE
22
A
ASN
23
n
23
ASN
23
A
ASN
24
n
24
ASN
24
A
LEU
25
n
25
LEU
25
A
ALA
26
n
26
ALA
26
A
ILE
27
n
27
ILE
27
A
LYS
28
n
28
LYS
28
A
ALA
29
n
29
ALA
29
A
MET
30
n
30
MET
30
A
LEU
31
n
31
LEU
31
A
THR
32
n
32
THR
32
A
ALA
33
n
33
ALA
33
A
LYS
34
n
34
LYS
34
A
VAL
35
n
35
VAL
35
A
ASP
36
n
36
ASP
36
A
LYS
37
n
37
LYS
37
A
LYS
38
n
38
LYS
38
A
ASP
39
n
39
ASP
39
A
MET
40
n
40
MET
40
A
ASP
41
n
41
ASP
41
A
LYS
42
n
42
LYS
42
A
PHE
43
n
43
PHE
43
A
TYR
44
n
44
TYR
44
A
ASP
45
n
45
ASP
45
A
SER
46
n
46
SER
46
A
ILE
47
n
47
ILE
47
A
ILE
48
n
48
ILE
48
A
TYR
49
n
49
TYR
49
A
GLY
50
n
50
GLY
50
A
ILE
51
n
51
ILE
51
A
ALA
52
n
52
ALA
52
A
PRO
53
n
53
PRO
53
A
PRO
54
n
54
PRO
54
A
PRO
55
n
55
PRO
55
A
GLN
56
n
56
GLN
56
A
PHE
57
n
57
PHE
57
A
LYS
58
n
58
LYS
58
A
LYS
59
n
59
LYS
59
A
ARG
60
n
60
ARG
60
A
TYR
61
n
61
TYR
61
A
ASN
62
n
62
ASN
62
A
THR
63
n
63
THR
63
A
ASN
64
n
64
ASN
64
A
ASP
65
n
65
ASP
65
A
ASN
66
n
66
ASN
66
A
SER
67
n
67
SER
67
A
ARG
68
n
68
ARG
68
A
GLY
69
n
69
GLY
69
A
MET
70
n
70
MET
70
A
ASN
71
n
71
ASN
71
A
PHE
72
n
72
PHE
72
A
GLU
73
n
73
GLU
73
A
THR
74
n
74
THR
74
A
ILE
75
n
75
ILE
75
A
MET
76
n
76
MET
76
A
PHE
77
n
77
PHE
77
A
THR
78
n
78
THR
78
A
LYS
79
n
79
LYS
79
A
VAL
80
n
80
VAL
80
A
ALA
81
n
81
ALA
81
A
MET
82
n
82
MET
82
A
LEU
83
n
83
LEU
83
A
ILE
84
n
84
ILE
84
A
CYS
85
n
85
CYS
85
A
GLU
86
n
86
GLU
86
A
ALA
87
n
87
ALA
87
A
LEU
88
n
88
LEU
88
A
ASN
89
n
89
ASN
89
A
SER
90
n
90
SER
90
A
LEU
91
n
91
LEU
91
A
LYS
92
n
92
LYS
92
A
VAL
93
n
93
VAL
93
A
THR
94
n
94
THR
94
A
GLN
95
n
95
GLN
95
A
ALA
96
n
96
ALA
96
A
ASN
97
n
97
ASN
97
A
VAL
98
n
98
VAL
98
A
SER
99
n
99
SER
99
A
ASN
100
n
100
ASN
100
A
VAL
101
n
101
VAL
101
A
LEU
102
n
102
LEU
102
A
SER
103
n
103
SER
103
A
ARG
104
n
104
ARG
104
A
VAL
105
n
105
VAL
105
A
VAL
106
n
106
VAL
106
A
SER
107
n
107
SER
107
A
ILE
108
n
108
ILE
108
A
ARG
109
n
109
ARG
109
A
HIS
110
n
110
HIS
110
A
LEU
111
n
111
LEU
111
A
GLU
112
n
112
GLU
112
A
ASN
113
n
113
ASN
113
A
LEU
114
n
114
LEU
114
A
VAL
115
n
115
VAL
115
A
ILE
116
n
116
ILE
116
A
ARG
117
n
117
ARG
117
A
LYS
118
n
118
LYS
118
A
GLU
119
n
119
GLU
119
A
ASN
120
n
120
ASN
120
A
PRO
121
n
121
PRO
121
A
GLN
122
n
122
GLN
122
A
ASP
123
n
123
ASP
123
A
ILE
124
n
124
ILE
124
A
LEU
125
n
125
LEU
125
A
PHE
126
n
126
PHE
126
A
HIS
127
n
127
HIS
127
A
SER
128
n
128
SER
128
A
LYS
129
n
129
LYS
129
A
ASP
130
n
130
ASP
130
A
LEU
131
n
131
LEU
131
A
LEU
132
n
132
LEU
132
A
LEU
133
n
133
LEU
133
A
LYS
134
n
134
LYS
134
A
SER
135
n
135
SER
135
A
THR
136
n
136
THR
136
A
LEU
137
n
137
LEU
137
A
ILE
138
n
138
ILE
138
A
ALA
139
n
139
ALA
139
A
ILE
140
n
140
ILE
140
A
GLY
141
n
141
GLY
141
A
GLN
142
n
142
GLN
142
A
SER
143
n
143
SER
143
A
LYS
144
n
144
LYS
144
A
GLU
145
n
145
GLU
145
A
ILE
146
n
146
ILE
146
A
GLU
147
n
147
GLU
147
A
THR
148
n
148
THR
148
A
THR
149
n
149
THR
149
A
ILE
150
n
150
ILE
150
A
THR
151
n
151
THR
151
A
ALA
152
n
152
ALA
152
A
GLU
153
n
153
GLU
153
A
GLY
154
n
154
GLY
154
A
GLY
155
n
155
GLY
155
A
GLU
156
n
156
GLU
156
A
ILE
157
n
157
ILE
157
A
VAL
158
n
158
VAL
158
A
PHE
159
n
159
PHE
159
A
GLN
160
n
160
GLN
160
A
ASN
161
n
161
ASN
161
A
ALA
162
n
162
ALA
162
A
ALA
163
n
163
ALA
163
A
PHE
164
n
164
PHE
164
A
THR
165
n
165
THR
165
A
MET
166
n
166
MET
166
A
TRP
167
n
167
TRP
167
A
LYS
168
n
168
LYS
168
A
LEU
169
n
169
LEU
169
A
THR
170
n
170
THR
170
A
TYR
171
n
171
TYR
171
A
LEU
172
n
172
LEU
172
A
GLU
173
n
173
GLU
173
A
HIS
174
n
174
HIS
174
A
GLN
175
n
175
GLN
175
A
LEU
176
n
176
LEU
176
A
MET
177
n
177
MET
177
A
PRO
178
n
178
PRO
178
A
ILE
179
n
179
ILE
179
A
LEU
180
n
180
LEU
180
A
ASP
181
n
181
ASP
181
A
GLN
182
n
182
GLN
182
A
ASN
183
n
183
ASN
183
A
PHE
184
n
184
PHE
184
A
ILE
185
n
185
ILE
185
A
GLU
186
n
186
GLU
186
A
TYR
187
n
187
TYR
187
A
LYS
188
n
188
LYS
188
A
VAL
189
n
189
VAL
189
A
THR
190
n
190
THR
190
A
LEU
191
n
191
LEU
191
A
ASN
192
n
192
ASN
192
A
GLU
193
n
193
GLU
193
A
ASP
194
n
194
ASP
194
A
LYS
195
n
195
LYS
195
A
PRO
196
n
196
PRO
196
A
ILE
197
n
197
ILE
197
A
SER
198
n
198
SER
198
A
ASP
199
n
199
ASP
199
A
VAL
200
n
200
VAL
200
A
HIS
201
n
201
HIS
201
A
VAL
202
n
202
VAL
202
A
LYS
203
n
203
LYS
203
A
GLU
204
n
204
GLU
204
A
LEU
205
n
205
LEU
205
A
VAL
206
n
206
VAL
206
A
ALA
207
n
207
ALA
207
A
GLU
208
n
208
GLU
208
A
LEU
209
n
209
LEU
209
A
ARG
210
n
210
ARG
210
A
TRP
211
n
211
TRP
211
A
GLN
212
n
212
GLN
212
A
TYR
213
n
213
TYR
213
A
ASN
214
n
214
ASN
214
A
LYS
215
n
215
LYS
215
A
PHE
216
n
216
PHE
216
A
ALA
217
n
217
ALA
217
A
VAL
218
n
218
VAL
218
A
ILE
219
n
219
ILE
219
A
THR
220
n
220
THR
220
A
HIS
221
n
221
HIS
221
A
GLY
222
n
222
GLY
222
A
LYS
223
n
223
LYS
223
A
GLY
224
n
224
GLY
224
A
HIP
225
n
225
PSH
225
A
TYR
226
n
226
TYR
226
A
ARG
227
n
227
ARG
227
A
ILE
228
n
228
ILE
228
A
VAL
229
n
229
VAL
229
A
LYS
230
n
230
LYS
230
A
TYR
231
n
231
TYR
231
A
SER
232
n
232
SER
232
A
SER
233
n
233
SER
233
A
VAL
234
n
234
VAL
234
A
ALA
235
n
235
ALA
235
A
ASN
236
n
236
ASN
236
A
HIS
237
n
237
HIS
237
A
ALA
238
n
238
ALA
238
A
ASP
239
n
239
ASP
239
A
ARG
240
n
240
ARG
240
A
VAL
241
n
241
VAL
241
A
TYR
242
n
242
TYR
242
A
ALA
243
n
243
ALA
243
A
THR
244
n
244
THR
244
A
PHE
245
n
245
PHE
245
A
LYS
246
n
246
LYS
246
A
SER
247
n
247
SER
247
A
ASN
248
n
248
ASN
248
A
VAL
249
n
249
VAL
249
A
LYS
250
n
250
LYS
250
A
n
251
251
A
n
252
252
A
n
253
253
A
n
254
254
A
ASN
255
n
255
ASN
255
A
ASP
256
n
256
ASP
256
A
PHE
257
n
257
PHE
257
A
ASN
258
n
258
ASN
258
A
LEU
259
n
259
LEU
259
A
LEU
260
n
260
LEU
260
A
ASP
261
n
261
ASP
261
A
GLN
262
n
262
GLN
262
A
ARG
263
n
263
ARG
263
A
ILE
264
n
264
ILE
264
A
ILE
265
n
265
ILE
265
A
TRP
266
n
266
TRP
266
A
GLN
267
n
267
GLN
267
A
ASN
268
n
268
ASN
268
A
TRP
269
n
269
TRP
269
A
TYR
270
n
270
TYR
270
A
ALA
271
n
271
ALA
271
A
PHE
272
n
272
PHE
272
A
THR
273
n
273
THR
273
A
SER
274
n
274
SER
274
A
SER
275
n
275
SER
275
A
MET
276
n
276
MET
276
A
LYS
277
n
277
LYS
277
A
GLN
278
n
278
GLN
278
A
GLY
279
n
279
GLY
279
A
ASN
280
n
280
ASN
280
A
THR
281
n
281
THR
281
A
LEU
282
n
282
LEU
282
A
ASP
283
n
283
ASP
283
A
VAL
284
n
284
VAL
284
A
CYS
285
n
285
CYS
285
A
LYS
286
n
286
LYS
286
A
ARG
287
n
287
ARG
287
A
LEU
288
n
288
LEU
288
A
LEU
289
n
289
LEU
289
A
PHE
290
n
290
PHE
290
A
GLN
291
n
291
GLN
291
A
LYS
292
n
292
LYS
292
A
MET
293
n
293
MET
293
A
LYS
294
n
294
LYS
294
A
PRO
295
n
295
PRO
295
A
GLU
296
n
296
GLU
296
A
LYS
297
n
297
LYS
297
A
ASN
298
n
298
ASN
298
A
PRO
299
n
299
PRO
299
A
PHE
300
n
300
PHE
300
A
LYS
301
n
301
LYS
301
A
GLY
302
n
302
GLY
302
A
LEU
303
n
303
LEU
303
A
SER
304
n
304
SER
304
A
THR
305
n
305
THR
305
A
ASP
306
n
306
ASP
306
A
ARG
307
n
307
ARG
307
A
LYS
308
n
308
LYS
308
A
MET
309
n
309
MET
309
A
ASP
310
n
310
ASP
310
A
GLU
311
n
311
GLU
311
A
VAL
312
n
312
VAL
312
A
SER
313
n
313
SER
313
A
n
314
314
A
n
315
315
A
n
316
316
A
n
317
317
A
author_and_software_defined_assembly
PISA
8
octameric
20530
A
PSH
225
1-THIOPHOSPHONO-L-HISTIDINE
A
PSH
225
HIS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_465
-x-1,-y+1,z
crystal symmetry operation
-108.1750000000
108.1750000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_565
-y,x+1,z
crystal symmetry operation
0.0000000000
108.1750000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_455
y-1,-x,z
crystal symmetry operation
-108.1750000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_455
-x-1,y,-z
crystal symmetry operation
-108.1750000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_565
x,-y+1,-z
crystal symmetry operation
0.0000000000
108.1750000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_465
y-1,x+1,-z
crystal symmetry operation
-108.1750000000
108.1750000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_555
-y,-x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
11
A
N
HIS
11
A
O
LYS
18
A
O
LYS
18
A
N
TYR
44
A
N
TYR
44
A
O
ALA
52
A
O
ALA
52
A
N
PHE
159
A
N
PHE
159
A
O
MET
166
A
O
MET
166
A
N
LEU
169
A
N
LEU
169
A
O
GLU
186
A
O
GLU
186
A
N
TYR
187
A
N
TYR
187
A
O
ILE
228
A
O
ILE
228
A
O
VAL
229
A
O
VAL
229
A
N
ALA
217
A
N
ALA
217
1
A
MET
1
A
MET
1
1
Y
1
A
THR
251
A
THR
251
1
Y
1
A
GLY
252
A
GLY
252
1
Y
1
A
VAL
253
A
VAL
253
1
Y
1
A
ASN
254
A
ASN
254
1
Y
1
A
GLN
314
A
GLN
314
1
Y
1
A
VAL
315
A
VAL
315
1
Y
1
A
GLY
316
A
GLY
316
1
Y
1
A
VAL
317
A
VAL
317
1
Y
1
A
ASN
14
45.75
91.27
1
A
ASP
15
37.82
69.22
1
A
SER
16
155.85
152.06
1
A
ILE
47
68.87
-48.54
1
A
GLU
73
-94.68
33.75
1
A
LYS
92
56.40
79.99
1
A
PHE
159
-175.11
132.69
1
A
THR
170
-92.07
34.88
1
A
TYR
171
-49.31
-17.01
1
A
HIS
174
-49.22
150.40
1
A
MET
177
-153.99
70.60
1
A
TYR
213
-142.36
39.93
1
A
LEU
260
59.70
172.62
1
A
ASN
280
-39.34
160.69
1
A
PRO
295
-48.80
100.36
41.8433
0.2777
0.2255
2.7
44.06
833
12746
11690
91.7
RANDOM
1
Isotropic
THROUGHOUT
1.0
1.0
MOLECULAR REPLACEMENT
PDB ENTRY 1l9v
Engh & Huber
2.7
44.06
15
2535
5
0
2515
0.011187
1.33635
80.03688
2.7
50
2R7C
12746
12530
3
3
0.057
1
18.6
7.8
0.393
2.7
2.8
14.3
1226
7.8
98.8
data collection
HKL-3000
phasing
AMoRE
refinement
CNS
1.1
data reduction
HKL-3000
data scaling
HKL-3000
Crystallographic and biochemical analysis of rotavirus NSP2 with nucleotides reveals an NDP kinase like activity
1
N
N
2
N
N
3
N
N
A
GLU
3
A
GLU
3
HELX_P
A
CYS
6
A
CYS
6
5
1
4
A
ASN
23
A
ASN
23
HELX_P
A
THR
32
A
THR
32
1
2
10
A
PRO
54
A
PRO
54
HELX_P
A
TYR
61
A
TYR
61
5
3
8
A
THR
74
A
THR
74
HELX_P
A
SER
90
A
SER
90
1
4
17
A
ASN
97
A
ASN
97
HELX_P
A
SER
103
A
SER
103
1
5
7
A
SER
107
A
SER
107
HELX_P
A
GLU
119
A
GLU
119
1
6
13
A
ASP
123
A
ASP
123
HELX_P
A
HIS
127
A
HIS
127
5
7
5
A
SER
128
A
SER
128
HELX_P
A
ILE
140
A
ILE
140
1
8
13
A
THR
148
A
THR
148
HELX_P
A
ALA
152
A
ALA
152
5
9
5
A
SER
198
A
SER
198
HELX_P
A
TYR
213
A
TYR
213
1
10
16
A
SER
233
A
SER
233
HELX_P
A
SER
247
A
SER
247
1
11
15
A
TRP
266
A
TRP
266
HELX_P
A
GLN
278
A
GLN
278
1
12
13
A
THR
281
A
THR
281
HELX_P
A
LEU
288
A
LEU
288
1
13
8
A
GLY
302
A
GLY
302
HELX_P
A
SER
313
A
SER
313
1
14
12
covale
1.332
both
A
GLY
224
A
C
GLY
224
1_555
A
PSH
225
A
N
PSH
225
1_555
covale
1.324
both
A
PSH
225
A
C
PSH
225
1_555
A
TYR
226
A
N
TYR
226
1_555
RNA BINDING PROTEIN
Rotavirus, NDP Kinase, non structural protein, NTPase, RNA binding protein, RNA-binding
VN35_ROTSR
UNP
1
1
Q03243
MAELACFCYPHLENDSYKFIPFNNLAIKAMLTAKVDKKDMDKFYDSIIYGIAPPPQFKKRYNTNDNSRGMNFETIMFTKV
AMLICEALNSLKVTQANVSNVLSRVVSIRHLENLVIRKENPQDILFHSKDLLLKSTLIAIGQSKEIETTITAEGGEIVFQ
NAAFTMWKLTYLEHQLMPILDQNFIEYKVTLNEDKPISDVHVKELVAELRWQYNKFAVITHGKGHYRIVKYSSVANHADR
VYATFKSNVKTGVNNDFNLLDQRIIWQNWYAFTSSMKQGNTLDVCKRLLFQKMKPEKNPFKGLSTDRKMDEVSQVGV
1
317
2R7C
1
317
Q03243
A
1
1
317
2
2
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
CYS
8
A
CYS
8
A
LEU
12
A
LEU
12
A
TYR
17
A
TYR
17
A
PRO
21
A
PRO
21
A
TYR
44
A
TYR
44
A
ASP
45
A
ASP
45
A
ILE
51
A
ILE
51
A
ALA
52
A
ALA
52
A
GLU
156
A
GLU
156
A
GLN
160
A
GLN
160
A
PHE
164
A
PHE
164
A
LEU
169
A
LEU
169
A
GLU
186
A
GLU
186
A
LEU
191
A
LEU
191
A
TYR
226
A
TYR
226
A
LYS
230
A
LYS
230
A
PHE
216
A
PHE
216
A
THR
220
A
THR
220
97
I 4 2 2