0.015195
0.000000
0.000000
0.000000
0.012404
0.000000
0.000000
0.000000
0.005959
0.00000
0.00000
0.00000
Chen, Y.Q.
Ghosh, S.
Ghosh, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
65.810
80.620
167.800
C9 H12 I N2 O8 P
434.078
n
5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C4 H10 O2 S2
154.251
(2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
O
N
8
N
O
N
9
N
I
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
N
N
35
S
C
N
36
N
C
N
37
N
O
N
38
N
C
N
39
N
O
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
N
N
48
S
C
N
49
N
C
N
50
N
O
N
51
N
C
N
52
N
C
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
N
N
58
N
O
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
O
N
81
N
N
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
N
N
92
S
C
N
93
N
C
N
94
N
O
N
95
N
C
N
96
N
C
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
R
C
N
109
N
C
N
110
N
O
N
111
N
C
N
112
N
S
N
113
N
O
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
O
N
122
N
P
N
123
N
O
N
124
N
O
N
125
N
O
N
126
N
C
N
127
R
C
N
128
N
O
N
129
S
C
N
130
N
O
N
131
N
C
N
132
R
C
Y
133
N
N
Y
134
N
C
Y
135
N
N
Y
136
N
C
Y
137
N
C
N
138
N
N
Y
139
N
N
Y
140
N
C
Y
141
N
N
Y
142
N
C
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
O
N
158
N
P
N
159
N
O
N
160
N
O
N
161
N
O
N
162
N
C
N
163
R
C
N
164
N
O
N
165
S
C
N
166
N
O
N
167
N
C
N
168
R
C
N
169
N
N
N
170
N
C
N
171
N
O
N
172
N
N
N
173
N
C
N
174
N
N
N
175
N
C
N
176
N
C
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
O
N
192
N
P
N
193
N
O
N
194
N
O
N
195
N
O
N
196
N
C
N
197
R
C
N
198
N
O
N
199
S
C
N
200
N
O
N
201
N
C
N
202
R
C
Y
203
N
N
Y
204
N
C
Y
205
N
N
Y
206
N
C
N
207
N
C
N
208
N
O
N
209
N
N
N
210
N
C
N
211
N
N
N
212
N
N
Y
213
N
C
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
O
N
229
N
P
N
230
N
O
N
231
N
O
N
232
N
O
N
233
N
C
N
234
R
C
N
235
N
O
N
236
S
C
N
237
N
O
N
238
N
C
N
239
R
C
N
240
N
N
N
241
N
C
N
242
N
O
N
243
N
N
N
244
N
C
N
245
N
O
N
246
N
C
N
247
N
C
N
248
N
C
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
S
N
265
N
C
N
266
S
C
N
267
N
O
N
268
S
C
N
269
N
O
N
270
N
C
N
271
N
S
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
N
287
N
C
N
288
N
C
N
289
N
O
N
290
N
N
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
O
N
310
N
O
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
N
C
N
323
N
C
N
324
N
O
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
Y
336
N
C
Y
337
N
N
Y
338
N
C
Y
339
N
C
Y
340
N
N
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
S
C
N
360
N
C
N
361
N
C
N
362
N
C
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
C
N
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
N
C
N
404
N
C
N
405
N
C
N
406
N
C
N
407
N
N
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
N
C
N
429
N
C
N
430
N
S
N
431
N
C
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
N
N
445
S
C
N
446
N
C
N
447
N
O
N
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
N
455
N
O
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
N
N
468
S
C
N
469
N
C
N
470
N
O
N
471
N
C
N
472
N
C
N
473
N
C
N
474
N
O
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
N
N
485
S
C
N
486
N
C
N
487
N
O
N
488
N
C
N
489
N
O
N
490
N
O
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
N
N
499
S
C
N
500
N
C
N
501
N
O
N
502
R
C
N
503
N
O
N
504
N
C
N
505
N
O
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
N
N
516
S
C
N
517
N
C
N
518
N
O
N
519
N
C
Y
520
N
C
Y
521
N
C
Y
522
N
C
Y
523
N
N
Y
524
N
C
Y
525
N
C
Y
526
N
C
Y
527
N
C
Y
528
N
C
N
529
N
O
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
N
N
543
S
C
N
544
N
C
N
545
N
O
N
546
N
C
Y
547
N
C
Y
548
N
C
Y
549
N
C
Y
550
N
C
Y
551
N
C
Y
552
N
C
N
553
N
O
N
554
N
O
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
N
N
567
S
C
N
568
N
C
N
569
N
O
N
570
N
C
N
571
N
C
N
572
N
C
N
573
N
O
N
574
N
H
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
H
N
581
N
H
N
582
N
H
N
583
N
H
N
584
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
doub
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
doub
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
sing
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
Y
145
N
sing
Y
146
N
doub
N
147
N
sing
Y
148
N
doub
N
149
N
sing
N
150
N
sing
Y
151
N
sing
Y
152
N
doub
N
153
N
sing
Y
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
Y
213
N
sing
Y
214
N
sing
Y
215
N
doub
N
216
N
sing
Y
217
N
sing
N
218
N
sing
Y
219
N
doub
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
Y
340
N
sing
Y
341
N
doub
Y
342
N
doub
N
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
Y
448
N
doub
Y
449
N
sing
Y
450
N
sing
N
451
N
sing
Y
452
N
doub
N
453
N
sing
Y
454
N
doub
N
455
N
sing
Y
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
doub
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
doub
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
doub
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
doub
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
Y
517
N
doub
Y
518
N
sing
Y
519
N
sing
N
520
N
sing
Y
521
N
doub
Y
522
N
sing
Y
523
N
sing
N
524
N
sing
Y
525
N
sing
Y
526
N
doub
N
527
N
sing
Y
528
N
doub
N
529
N
sing
Y
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
doub
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
Y
545
N
doub
Y
546
N
sing
Y
547
N
sing
N
548
N
sing
Y
549
N
doub
N
550
N
sing
Y
551
N
doub
N
552
N
sing
Y
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
doub
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
5
67
73
10.1038/nsb0198-67
9437432
A novel DNA recognition mode by the NF-kappa B p65 homodimer.
1998
10.2210/pdb2ram/pdb
pdb_00002ram
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
105
1
IMAGE PLATE
1996-11
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
6358.706
DNA (5'-D(*CP*GP*GP*CP*TP*GP*GP*AP*AP*AP*TP*(5IU)P*(5IU)P*CP*CP*AP*GP*CP*CP*G)-3')
2
syn
polymer
31010.080
PROTEIN (TRANSCRIPTION FACTOR NF-KB P65)
P65 RESIDUES 19 - 291
2
man
polymer
154.251
(2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
2
syn
non-polymer
18.015
water
128
nat
water
RELA
no
yes
(DC)(DG)(DG)(DC)(DT)(DG)(DG)(DA)(DA)(DA)(DT)(5IU)(5IU)(DC)(DC)(DA)(DG)(DC)(DC)
(DG)
CGGCTGGAAATUUCCAGCCG
C,D
polydeoxyribonucleotide
no
no
PYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDG
YYEADLCPDRSIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFHVPIEEQRGDYDLNAVRLCFQVTVRDPAGRPLLLTPV
LSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYA
DPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPD
PYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDG
YYEADLCPDRSIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFHVPIEEQRGDYDLNAVRLCFQVTVRDPAGRPLLLTPV
LSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYA
DPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPD
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
sample
10090
Mus musculus
562
Escherichia coli
1
2.97
58.63
7.5
pH 7.5
3.728
1
C
1
D
20
44.305
C_DC1:DG20_D
1
-10.924
2.302
0.509
1.268
32.349
1
19
C
2
D
19
-1.384
C_DG2:DC19_D
2
-13.893
1.021
1.543
-0.552
14.141
1
19
C
3
D
18
-14.457
C_DG3:DC18_D
3
-25.157
0.367
1.198
-0.783
-8.289
1
C
4
D
17
12.224
C_DC4:DG17_D
4
-20.564
-1.498
0.289
0.183
12.675
1
20
C
5
D
16
-0.370
C_DT5:DA16_D
5
-17.661
0.492
-0.177
-0.088
25.991
1
19
C
6
D
15
3.572
C_DG6:DC15_D
6
-10.208
0.937
1.227
-0.364
16.273
1
19
C
7
D
14
-3.769
C_DG7:DC14_D
7
-17.345
0.393
0.620
-0.426
4.767
1
20
C
8
D
13
7.507
C_DA8:5IU13_D
8
-19.222
-0.017
-0.015
0.092
11.689
1
20
C
9
D
12
3.378
C_DA9:5IU12_D
9
-17.157
-0.062
0.852
-0.115
8.092
1
20
C
10
D
11
4.479
C_DA10:DT11_D
10
-19.991
-0.177
0.081
0.178
-1.061
1
20
C
11
D
10
6.403
C_DT11:DA10_D
11
-26.044
0.423
0.207
0.017
-3.241
1
20
C
12
D
9
6.369
C_5IU12:DA9_D
12
-18.921
-0.049
0.290
-0.052
-8.035
1
20
C
13
D
8
8.399
C_5IU13:DA8_D
13
-20.240
-0.396
-0.431
-0.096
0.674
1
19
C
14
D
7
7.139
C_DC14:DG7_D
14
-13.608
0.366
0.176
0.160
5.413
1
19
C
15
D
6
-1.261
C_DC15:DG6_D
15
-5.896
0.021
-0.058
-0.310
28.539
C
16
D
5
4.706
C_DA16:DT5_D
16
-20.646
0.151
1.134
0.175
14.665
1
19
C
17
D
4
-11.538
C_DG17:DC4_D
17
-29.635
1.586
1.216
-0.477
-6.493
1
19
C
18
D
3
-2.859
C_DC18:DG3_D
18
-21.679
-0.346
0.477
-0.375
-10.266
1
19
C
19
D
2
6.761
C_DC19:DG2_D
19
-7.949
-1.363
0.787
-0.211
25.385
1
19
C
20
D
1
3.290
C_DG20:DC1_D
20
17.536
-0.004
0.946
0.210
3.107
42.544
C
C
1
2
-2.197
D
D
20
19
2.727
-1.550
-1.684
1.783
CC_DC1DG2:DC19DG20_DD
1
-17.562
24.890
38.875
2.604
0.657
3.771
38.843
C
C
2
3
-8.818
D
D
19
18
3.673
-5.840
-0.811
-0.662
CC_DG2DG3:DC18DC19_DD
2
-2.315
3.496
38.351
-0.181
0.896
3.782
30.196
C
C
3
4
-3.615
D
D
18
17
3.807
-1.857
0.421
-0.260
CC_DG3DC4:DG17DC18_DD
3
8.583
-16.707
28.919
-0.052
1.261
2.870
38.328
C
C
4
5
2.576
D
D
17
16
2.890
1.688
-0.317
0.604
CC_DC4DT5:DA16DG17_DD
4
3.723
-5.681
38.117
0.733
0.894
2.723
49.614
C
C
5
6
-8.412
D
D
16
15
3.087
-6.981
0.236
1.582
CC_DT5DG6:DC15DA16_DD
5
-11.523
13.885
47.862
2.352
-1.050
3.419
34.116
C
C
6
7
-11.533
D
D
15
14
3.535
-6.699
-0.291
-0.169
CC_DG6DG7:DC14DC15_DD
6
5.213
-8.974
33.074
0.860
1.390
3.600
36.581
C
C
7
8
2.497
D
D
14
13
3.591
1.562
0.511
-0.574
CC_DG7DA8:5IU13DC14_DD
7
5.121
-8.186
36.200
-1.151
-0.036
2.979
33.533
C
C
8
9
-13.260
D
D
13
12
2.936
-7.566
0.118
-0.710
CC_DA8DA9:5IU125IU13_DD
8
-4.471
7.837
32.393
-0.086
-0.881
3.400
35.962
C
C
9
10
-3.185
D
D
12
11
3.380
-1.963
-0.080
-0.861
CC_DA9DA10:DT115IU12_DD
9
3.265
-5.298
35.766
-1.104
0.613
3.190
36.996
C
C
10
11
10.673
D
D
11
10
3.334
6.731
-0.154
-0.533
CC_DA10DT11:DA10DT11_DD
10
-2.775
4.400
36.297
-1.753
-0.134
3.298
33.388
C
C
11
12
-1.950
D
D
10
9
3.275
-1.120
-0.276
-0.533
CC_DT115IU12:DA9DA10_DD
11
-1.213
2.112
33.348
-0.742
0.278
3.227
37.387
C
C
12
13
-4.072
D
D
9
8
3.221
-2.599
0.137
-0.387
CC_5IU125IU13:DA8DA9_DD
12
5.420
-8.489
36.918
-0.265
0.495
3.221
33.979
C
C
13
14
2.602
D
D
8
7
3.257
1.516
0.009
-0.142
CC_5IU13DC14:DG7DA8_DD
13
-4.453
7.643
33.661
-0.483
-0.724
3.391
30.699
C
C
14
15
-1.600
D
D
7
6
3.392
-0.847
-0.007
-0.216
CC_DC14DC15:DG6DG7_DD
14
1.616
-3.054
30.646
-0.236
0.343
2.986
37.880
C
C
15
16
-0.197
D
D
6
5
2.930
-0.126
-0.605
0.883
CC_DC15DA16:DT5DG6_DD
15
-9.641
15.006
36.675
1.375
-0.205
3.561
45.116
C
C
16
17
0.800
D
D
5
4
3.532
0.613
-0.535
-0.196
CC_DA16DG17:DC4DT5_DD
16
-3.940
5.142
44.948
-0.315
0.314
3.364
26.057
C
C
17
18
4.816
D
D
4
3
3.579
2.165
-0.518
-1.634
CC_DG17DC18:DG3DC4_DD
17
2.662
-5.921
25.834
-4.256
1.924
3.147
25.046
C
C
18
19
7.413
D
D
3
2
3.326
3.200
0.395
-0.749
CC_DC18DC19:DG2DG3_DD
18
-2.620
6.068
24.708
-2.671
-1.684
2.293
37.570
C
C
19
20
-10.993
D
D
2
1
2.631
-7.025
0.375
1.295
CC_DC19DG20:DC1DG2_DD
19
-4.460
6.979
36.669
2.708
-1.025
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1998-05-27
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1997-11-23
REL
REL
DTV
(2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
HOH
water
DTT
501
3
DTV
DTV
501
A
DTT
502
3
DTV
DTV
502
B
HOH
306
4
HOH
HOH
306
C
HOH
316
4
HOH
HOH
316
C
HOH
325
4
HOH
HOH
325
C
HOH
328
4
HOH
HOH
328
C
HOH
333
4
HOH
HOH
333
C
HOH
353
4
HOH
HOH
353
C
HOH
360
4
HOH
HOH
360
C
HOH
384
4
HOH
HOH
384
C
HOH
397
4
HOH
HOH
397
C
HOH
404
4
HOH
HOH
404
C
HOH
317
4
HOH
HOH
317
D
HOH
320
4
HOH
HOH
320
D
HOH
329
4
HOH
HOH
329
D
HOH
335
4
HOH
HOH
335
D
HOH
336
4
HOH
HOH
336
D
HOH
341
4
HOH
HOH
341
D
HOH
368
4
HOH
HOH
368
D
HOH
371
4
HOH
HOH
371
D
HOH
372
4
HOH
HOH
372
D
HOH
375
4
HOH
HOH
375
D
HOH
380
4
HOH
HOH
380
D
HOH
393
4
HOH
HOH
393
D
HOH
401
4
HOH
HOH
401
D
HOH
403
4
HOH
HOH
403
D
HOH
414
4
HOH
HOH
414
D
HOH
302
4
HOH
HOH
302
A
HOH
303
4
HOH
HOH
303
A
HOH
305
4
HOH
HOH
305
A
HOH
308
4
HOH
HOH
308
A
HOH
309
4
HOH
HOH
309
A
HOH
310
4
HOH
HOH
310
A
HOH
311
4
HOH
HOH
311
A
HOH
313
4
HOH
HOH
313
A
HOH
314
4
HOH
HOH
314
A
HOH
318
4
HOH
HOH
318
A
HOH
319
4
HOH
HOH
319
A
HOH
321
4
HOH
HOH
321
A
HOH
322
4
HOH
HOH
322
A
HOH
323
4
HOH
HOH
323
A
HOH
324
4
HOH
HOH
324
A
HOH
326
4
HOH
HOH
326
A
HOH
330
4
HOH
HOH
330
A
HOH
331
4
HOH
HOH
331
A
HOH
332
4
HOH
HOH
332
A
HOH
338
4
HOH
HOH
338
A
HOH
344
4
HOH
HOH
344
A
HOH
348
4
HOH
HOH
348
A
HOH
349
4
HOH
HOH
349
A
HOH
356
4
HOH
HOH
356
A
HOH
357
4
HOH
HOH
357
A
HOH
361
4
HOH
HOH
361
A
HOH
364
4
HOH
HOH
364
A
HOH
366
4
HOH
HOH
366
A
HOH
367
4
HOH
HOH
367
A
HOH
370
4
HOH
HOH
370
A
HOH
373
4
HOH
HOH
373
A
HOH
377
4
HOH
HOH
377
A
HOH
378
4
HOH
HOH
378
A
HOH
381
4
HOH
HOH
381
A
HOH
382
4
HOH
HOH
382
A
HOH
383
4
HOH
HOH
383
A
HOH
385
4
HOH
HOH
385
A
HOH
386
4
HOH
HOH
386
A
HOH
387
4
HOH
HOH
387
A
HOH
389
4
HOH
HOH
389
A
HOH
390
4
HOH
HOH
390
A
HOH
392
4
HOH
HOH
392
A
HOH
394
4
HOH
HOH
394
A
HOH
398
4
HOH
HOH
398
A
HOH
400
4
HOH
HOH
400
A
HOH
405
4
HOH
HOH
405
A
HOH
409
4
HOH
HOH
409
A
HOH
416
4
HOH
HOH
416
A
HOH
417
4
HOH
HOH
417
A
HOH
418
4
HOH
HOH
418
A
HOH
419
4
HOH
HOH
419
A
HOH
420
4
HOH
HOH
420
A
HOH
421
4
HOH
HOH
421
A
HOH
422
4
HOH
HOH
422
A
HOH
423
4
HOH
HOH
423
A
HOH
424
4
HOH
HOH
424
A
HOH
426
4
HOH
HOH
426
A
HOH
427
4
HOH
HOH
427
A
HOH
301
4
HOH
HOH
301
B
HOH
304
4
HOH
HOH
304
B
HOH
307
4
HOH
HOH
307
B
HOH
312
4
HOH
HOH
312
B
HOH
327
4
HOH
HOH
327
B
HOH
334
4
HOH
HOH
334
B
HOH
337
4
HOH
HOH
337
B
HOH
339
4
HOH
HOH
339
B
HOH
340
4
HOH
HOH
340
B
HOH
342
4
HOH
HOH
342
B
HOH
343
4
HOH
HOH
343
B
HOH
345
4
HOH
HOH
345
B
HOH
346
4
HOH
HOH
346
B
HOH
347
4
HOH
HOH
347
B
HOH
350
4
HOH
HOH
350
B
HOH
351
4
HOH
HOH
351
B
HOH
352
4
HOH
HOH
352
B
HOH
354
4
HOH
HOH
354
B
HOH
355
4
HOH
HOH
355
B
HOH
358
4
HOH
HOH
358
B
HOH
359
4
HOH
HOH
359
B
HOH
362
4
HOH
HOH
362
B
HOH
363
4
HOH
HOH
363
B
HOH
365
4
HOH
HOH
365
B
HOH
369
4
HOH
HOH
369
B
HOH
374
4
HOH
HOH
374
B
HOH
376
4
HOH
HOH
376
B
HOH
379
4
HOH
HOH
379
B
HOH
388
4
HOH
HOH
388
B
HOH
391
4
HOH
HOH
391
B
HOH
395
4
HOH
HOH
395
B
HOH
396
4
HOH
HOH
396
B
HOH
399
4
HOH
HOH
399
B
HOH
402
4
HOH
HOH
402
B
HOH
406
4
HOH
HOH
406
B
HOH
407
4
HOH
HOH
407
B
HOH
408
4
HOH
HOH
408
B
HOH
410
4
HOH
HOH
410
B
HOH
411
4
HOH
HOH
411
B
HOH
412
4
HOH
HOH
412
B
HOH
413
4
HOH
HOH
413
B
HOH
415
4
HOH
HOH
415
B
HOH
425
4
HOH
HOH
425
B
HOH
428
4
HOH
HOH
428
B
HOH
429
4
HOH
HOH
429
B
C
1
n
1
DC
1
C
G
2
n
2
DG
2
C
G
3
n
3
DG
3
C
C
4
n
4
DC
4
C
T
5
n
5
DT
5
C
G
6
n
6
DG
6
C
G
7
n
7
DG
7
C
A
8
n
8
DA
8
C
A
9
n
9
DA
9
C
A
10
n
10
DA
10
C
T
11
n
11
DT
11
C
+U
12
n
12
5IU
12
C
+U
13
n
13
5IU
13
C
C
14
n
14
DC
14
C
C
15
n
15
DC
15
C
A
16
n
16
DA
16
C
G
17
n
17
DG
17
C
C
18
n
18
DC
18
C
C
19
n
19
DC
19
C
G
20
n
20
DG
20
C
C
1
n
1
DC
1
D
G
2
n
2
DG
2
D
G
3
n
3
DG
3
D
C
4
n
4
DC
4
D
T
5
n
5
DT
5
D
G
6
n
6
DG
6
D
G
7
n
7
DG
7
D
A
8
n
8
DA
8
D
A
9
n
9
DA
9
D
A
10
n
10
DA
10
D
T
11
n
11
DT
11
D
+U
12
n
12
5IU
12
D
+U
13
n
13
5IU
13
D
C
14
n
14
DC
14
D
C
15
n
15
DC
15
D
A
16
n
16
DA
16
D
G
17
n
17
DG
17
D
C
18
n
18
DC
18
D
C
19
n
19
DC
19
D
G
20
n
20
DG
20
D
PRO
19
n
1
PRO
19
A
TYR
20
n
2
TYR
20
A
VAL
21
n
3
VAL
21
A
GLU
22
n
4
GLU
22
A
ILE
23
n
5
ILE
23
A
ILE
24
n
6
ILE
24
A
GLU
25
n
7
GLU
25
A
GLN
26
n
8
GLN
26
A
PRO
27
n
9
PRO
27
A
LYS
28
n
10
LYS
28
A
GLN
29
n
11
GLN
29
A
ARG
30
n
12
ARG
30
A
GLY
31
n
13
GLY
31
A
MET
32
n
14
MET
32
A
ARG
33
n
15
ARG
33
A
PHE
34
n
16
PHE
34
A
ARG
35
n
17
ARG
35
A
TYR
36
n
18
TYR
36
A
LYS
37
n
19
LYS
37
A
CYS
38
n
20
CYS
38
A
GLU
39
n
21
GLU
39
A
GLY
40
n
22
GLY
40
A
ARG
41
n
23
ARG
41
A
SER
42
n
24
SER
42
A
ALA
43
n
25
ALA
43
A
GLY
44
n
26
GLY
44
A
SER
45
n
27
SER
45
A
ILE
46
n
28
ILE
46
A
PRO
47
n
29
PRO
47
A
GLY
48
n
30
GLY
48
A
GLU
49
n
31
GLU
49
A
ARG
50
n
32
ARG
50
A
SER
51
n
33
SER
51
A
THR
52
n
34
THR
52
A
ASP
53
n
35
ASP
53
A
THR
54
n
36
THR
54
A
THR
55
n
37
THR
55
A
LYS
56
n
38
LYS
56
A
THR
57
n
39
THR
57
A
HIS
58
n
40
HIS
58
A
PRO
59
n
41
PRO
59
A
THR
60
n
42
THR
60
A
ILE
61
n
43
ILE
61
A
LYS
62
n
44
LYS
62
A
ILE
63
n
45
ILE
63
A
ASN
64
n
46
ASN
64
A
GLY
65
n
47
GLY
65
A
TYR
66
n
48
TYR
66
A
THR
67
n
49
THR
67
A
GLY
68
n
50
GLY
68
A
PRO
69
n
51
PRO
69
A
GLY
70
n
52
GLY
70
A
THR
71
n
53
THR
71
A
VAL
72
n
54
VAL
72
A
ARG
73
n
55
ARG
73
A
ILE
74
n
56
ILE
74
A
SER
75
n
57
SER
75
A
LEU
76
n
58
LEU
76
A
VAL
77
n
59
VAL
77
A
THR
78
n
60
THR
78
A
LYS
79
n
61
LYS
79
A
ASP
80
n
62
ASP
80
A
PRO
81
n
63
PRO
81
A
PRO
82
n
64
PRO
82
A
HIS
83
n
65
HIS
83
A
ARG
84
n
66
ARG
84
A
PRO
85
n
67
PRO
85
A
HIS
86
n
68
HIS
86
A
PRO
87
n
69
PRO
87
A
HIS
88
n
70
HIS
88
A
GLU
89
n
71
GLU
89
A
LEU
90
n
72
LEU
90
A
VAL
91
n
73
VAL
91
A
GLY
92
n
74
GLY
92
A
LYS
93
n
75
LYS
93
A
ASP
94
n
76
ASP
94
A
CYS
95
n
77
CYS
95
A
ARG
96
n
78
ARG
96
A
ASP
97
n
79
ASP
97
A
GLY
98
n
80
GLY
98
A
TYR
99
n
81
TYR
99
A
TYR
100
n
82
TYR
100
A
GLU
101
n
83
GLU
101
A
ALA
102
n
84
ALA
102
A
ASP
103
n
85
ASP
103
A
LEU
104
n
86
LEU
104
A
CYS
105
n
87
CYS
105
A
PRO
106
n
88
PRO
106
A
ASP
107
n
89
ASP
107
A
ARG
108
n
90
ARG
108
A
SER
109
n
91
SER
109
A
ILE
110
n
92
ILE
110
A
HIS
111
n
93
HIS
111
A
SER
112
n
94
SER
112
A
PHE
113
n
95
PHE
113
A
GLN
114
n
96
GLN
114
A
ASN
115
n
97
ASN
115
A
LEU
116
n
98
LEU
116
A
GLY
117
n
99
GLY
117
A
ILE
118
n
100
ILE
118
A
GLN
119
n
101
GLN
119
A
CYS
120
n
102
CYS
120
A
VAL
121
n
103
VAL
121
A
LYS
122
n
104
LYS
122
A
LYS
123
n
105
LYS
123
A
ARG
124
n
106
ARG
124
A
ASP
125
n
107
ASP
125
A
LEU
126
n
108
LEU
126
A
GLU
127
n
109
GLU
127
A
GLN
128
n
110
GLN
128
A
ALA
129
n
111
ALA
129
A
ILE
130
n
112
ILE
130
A
SER
131
n
113
SER
131
A
GLN
132
n
114
GLN
132
A
ARG
133
n
115
ARG
133
A
ILE
134
n
116
ILE
134
A
GLN
135
n
117
GLN
135
A
THR
136
n
118
THR
136
A
ASN
137
n
119
ASN
137
A
ASN
138
n
120
ASN
138
A
ASN
139
n
121
ASN
139
A
PRO
140
n
122
PRO
140
A
PHE
141
n
123
PHE
141
A
HIS
142
n
124
HIS
142
A
VAL
143
n
125
VAL
143
A
PRO
144
n
126
PRO
144
A
ILE
145
n
127
ILE
145
A
GLU
146
n
128
GLU
146
A
GLU
147
n
129
GLU
147
A
GLN
148
n
130
GLN
148
A
ARG
149
n
131
ARG
149
A
GLY
150
n
132
GLY
150
A
ASP
151
n
133
ASP
151
A
TYR
152
n
134
TYR
152
A
ASP
153
n
135
ASP
153
A
LEU
154
n
136
LEU
154
A
ASN
155
n
137
ASN
155
A
ALA
156
n
138
ALA
156
A
VAL
157
n
139
VAL
157
A
ARG
158
n
140
ARG
158
A
LEU
159
n
141
LEU
159
A
CYS
160
n
142
CYS
160
A
PHE
161
n
143
PHE
161
A
GLN
162
n
144
GLN
162
A
VAL
163
n
145
VAL
163
A
THR
164
n
146
THR
164
A
VAL
165
n
147
VAL
165
A
ARG
166
n
148
ARG
166
A
ASP
167
n
149
ASP
167
A
PRO
168
n
150
PRO
168
A
ALA
169
n
151
ALA
169
A
GLY
170
n
152
GLY
170
A
ARG
171
n
153
ARG
171
A
PRO
172
n
154
PRO
172
A
LEU
173
n
155
LEU
173
A
LEU
174
n
156
LEU
174
A
LEU
175
n
157
LEU
175
A
THR
176
n
158
THR
176
A
PRO
177
n
159
PRO
177
A
VAL
178
n
160
VAL
178
A
LEU
179
n
161
LEU
179
A
SER
180
n
162
SER
180
A
HIS
181
n
163
HIS
181
A
PRO
182
n
164
PRO
182
A
ILE
183
n
165
ILE
183
A
PHE
184
n
166
PHE
184
A
ASP
185
n
167
ASP
185
A
ASN
186
n
168
ASN
186
A
ARG
187
n
169
ARG
187
A
ALA
188
n
170
ALA
188
A
PRO
189
n
171
PRO
189
A
ASN
190
n
172
ASN
190
A
THR
191
n
173
THR
191
A
ALA
192
n
174
ALA
192
A
GLU
193
n
175
GLU
193
A
LEU
194
n
176
LEU
194
A
LYS
195
n
177
LYS
195
A
ILE
196
n
178
ILE
196
A
CYS
197
n
179
CYS
197
A
ARG
198
n
180
ARG
198
A
VAL
199
n
181
VAL
199
A
ASN
200
n
182
ASN
200
A
ARG
201
n
183
ARG
201
A
ASN
202
n
184
ASN
202
A
SER
203
n
185
SER
203
A
GLY
204
n
186
GLY
204
A
SER
205
n
187
SER
205
A
CYS
206
n
188
CYS
206
A
LEU
207
n
189
LEU
207
A
GLY
208
n
190
GLY
208
A
GLY
209
n
191
GLY
209
A
ASP
210
n
192
ASP
210
A
GLU
211
n
193
GLU
211
A
ILE
212
n
194
ILE
212
A
PHE
213
n
195
PHE
213
A
LEU
214
n
196
LEU
214
A
LEU
215
n
197
LEU
215
A
CYS
216
n
198
CYS
216
A
ASP
217
n
199
ASP
217
A
LYS
218
n
200
LYS
218
A
VAL
219
n
201
VAL
219
A
GLN
220
n
202
GLN
220
A
LYS
221
n
203
LYS
221
A
GLU
222
n
204
GLU
222
A
ASP
223
n
205
ASP
223
A
ILE
224
n
206
ILE
224
A
GLU
225
n
207
GLU
225
A
VAL
226
n
208
VAL
226
A
TYR
227
n
209
TYR
227
A
PHE
228
n
210
PHE
228
A
THR
229
n
211
THR
229
A
GLY
230
n
212
GLY
230
A
PRO
231
n
213
PRO
231
A
GLY
232
n
214
GLY
232
A
TRP
233
n
215
TRP
233
A
GLU
234
n
216
GLU
234
A
ALA
235
n
217
ALA
235
A
ARG
236
n
218
ARG
236
A
GLY
237
n
219
GLY
237
A
SER
238
n
220
SER
238
A
PHE
239
n
221
PHE
239
A
SER
240
n
222
SER
240
A
GLN
241
n
223
GLN
241
A
ALA
242
n
224
ALA
242
A
ASP
243
n
225
ASP
243
A
VAL
244
n
226
VAL
244
A
HIS
245
n
227
HIS
245
A
ARG
246
n
228
ARG
246
A
GLN
247
n
229
GLN
247
A
VAL
248
n
230
VAL
248
A
ALA
249
n
231
ALA
249
A
ILE
250
n
232
ILE
250
A
VAL
251
n
233
VAL
251
A
PHE
252
n
234
PHE
252
A
ARG
253
n
235
ARG
253
A
THR
254
n
236
THR
254
A
PRO
255
n
237
PRO
255
A
PRO
256
n
238
PRO
256
A
TYR
257
n
239
TYR
257
A
ALA
258
n
240
ALA
258
A
ASP
259
n
241
ASP
259
A
PRO
260
n
242
PRO
260
A
SER
261
n
243
SER
261
A
LEU
262
n
244
LEU
262
A
GLN
263
n
245
GLN
263
A
ALA
264
n
246
ALA
264
A
PRO
265
n
247
PRO
265
A
VAL
266
n
248
VAL
266
A
ARG
267
n
249
ARG
267
A
VAL
268
n
250
VAL
268
A
SER
269
n
251
SER
269
A
MET
270
n
252
MET
270
A
GLN
271
n
253
GLN
271
A
LEU
272
n
254
LEU
272
A
ARG
273
n
255
ARG
273
A
ARG
274
n
256
ARG
274
A
PRO
275
n
257
PRO
275
A
SER
276
n
258
SER
276
A
ASP
277
n
259
ASP
277
A
ARG
278
n
260
ARG
278
A
GLU
279
n
261
GLU
279
A
LEU
280
n
262
LEU
280
A
SER
281
n
263
SER
281
A
GLU
282
n
264
GLU
282
A
PRO
283
n
265
PRO
283
A
MET
284
n
266
MET
284
A
GLU
285
n
267
GLU
285
A
PHE
286
n
268
PHE
286
A
GLN
287
n
269
GLN
287
A
TYR
288
n
270
TYR
288
A
LEU
289
n
271
LEU
289
A
PRO
290
n
272
PRO
290
A
ASP
291
n
273
ASP
291
A
PRO
19
n
1
PRO
19
B
TYR
20
n
2
TYR
20
B
VAL
21
n
3
VAL
21
B
GLU
22
n
4
GLU
22
B
ILE
23
n
5
ILE
23
B
ILE
24
n
6
ILE
24
B
GLU
25
n
7
GLU
25
B
GLN
26
n
8
GLN
26
B
PRO
27
n
9
PRO
27
B
LYS
28
n
10
LYS
28
B
GLN
29
n
11
GLN
29
B
ARG
30
n
12
ARG
30
B
GLY
31
n
13
GLY
31
B
MET
32
n
14
MET
32
B
ARG
33
n
15
ARG
33
B
PHE
34
n
16
PHE
34
B
ARG
35
n
17
ARG
35
B
TYR
36
n
18
TYR
36
B
LYS
37
n
19
LYS
37
B
CYS
38
n
20
CYS
38
B
GLU
39
n
21
GLU
39
B
GLY
40
n
22
GLY
40
B
ARG
41
n
23
ARG
41
B
SER
42
n
24
SER
42
B
ALA
43
n
25
ALA
43
B
GLY
44
n
26
GLY
44
B
SER
45
n
27
SER
45
B
ILE
46
n
28
ILE
46
B
PRO
47
n
29
PRO
47
B
GLY
48
n
30
GLY
48
B
GLU
49
n
31
GLU
49
B
ARG
50
n
32
ARG
50
B
SER
51
n
33
SER
51
B
THR
52
n
34
THR
52
B
ASP
53
n
35
ASP
53
B
THR
54
n
36
THR
54
B
THR
55
n
37
THR
55
B
LYS
56
n
38
LYS
56
B
THR
57
n
39
THR
57
B
HIS
58
n
40
HIS
58
B
PRO
59
n
41
PRO
59
B
THR
60
n
42
THR
60
B
ILE
61
n
43
ILE
61
B
LYS
62
n
44
LYS
62
B
ILE
63
n
45
ILE
63
B
ASN
64
n
46
ASN
64
B
GLY
65
n
47
GLY
65
B
TYR
66
n
48
TYR
66
B
THR
67
n
49
THR
67
B
GLY
68
n
50
GLY
68
B
PRO
69
n
51
PRO
69
B
GLY
70
n
52
GLY
70
B
THR
71
n
53
THR
71
B
VAL
72
n
54
VAL
72
B
ARG
73
n
55
ARG
73
B
ILE
74
n
56
ILE
74
B
SER
75
n
57
SER
75
B
LEU
76
n
58
LEU
76
B
VAL
77
n
59
VAL
77
B
THR
78
n
60
THR
78
B
LYS
79
n
61
LYS
79
B
ASP
80
n
62
ASP
80
B
PRO
81
n
63
PRO
81
B
PRO
82
n
64
PRO
82
B
HIS
83
n
65
HIS
83
B
ARG
84
n
66
ARG
84
B
PRO
85
n
67
PRO
85
B
HIS
86
n
68
HIS
86
B
PRO
87
n
69
PRO
87
B
HIS
88
n
70
HIS
88
B
GLU
89
n
71
GLU
89
B
LEU
90
n
72
LEU
90
B
VAL
91
n
73
VAL
91
B
GLY
92
n
74
GLY
92
B
LYS
93
n
75
LYS
93
B
ASP
94
n
76
ASP
94
B
CYS
95
n
77
CYS
95
B
ARG
96
n
78
ARG
96
B
ASP
97
n
79
ASP
97
B
GLY
98
n
80
GLY
98
B
TYR
99
n
81
TYR
99
B
TYR
100
n
82
TYR
100
B
GLU
101
n
83
GLU
101
B
ALA
102
n
84
ALA
102
B
ASP
103
n
85
ASP
103
B
LEU
104
n
86
LEU
104
B
CYS
105
n
87
CYS
105
B
PRO
106
n
88
PRO
106
B
ASP
107
n
89
ASP
107
B
ARG
108
n
90
ARG
108
B
SER
109
n
91
SER
109
B
ILE
110
n
92
ILE
110
B
HIS
111
n
93
HIS
111
B
SER
112
n
94
SER
112
B
PHE
113
n
95
PHE
113
B
GLN
114
n
96
GLN
114
B
ASN
115
n
97
ASN
115
B
LEU
116
n
98
LEU
116
B
GLY
117
n
99
GLY
117
B
ILE
118
n
100
ILE
118
B
GLN
119
n
101
GLN
119
B
CYS
120
n
102
CYS
120
B
VAL
121
n
103
VAL
121
B
LYS
122
n
104
LYS
122
B
LYS
123
n
105
LYS
123
B
ARG
124
n
106
ARG
124
B
ASP
125
n
107
ASP
125
B
LEU
126
n
108
LEU
126
B
GLU
127
n
109
GLU
127
B
GLN
128
n
110
GLN
128
B
ALA
129
n
111
ALA
129
B
ILE
130
n
112
ILE
130
B
SER
131
n
113
SER
131
B
GLN
132
n
114
GLN
132
B
ARG
133
n
115
ARG
133
B
ILE
134
n
116
ILE
134
B
GLN
135
n
117
GLN
135
B
THR
136
n
118
THR
136
B
ASN
137
n
119
ASN
137
B
ASN
138
n
120
ASN
138
B
ASN
139
n
121
ASN
139
B
PRO
140
n
122
PRO
140
B
PHE
141
n
123
PHE
141
B
HIS
142
n
124
HIS
142
B
VAL
143
n
125
VAL
143
B
PRO
144
n
126
PRO
144
B
ILE
145
n
127
ILE
145
B
GLU
146
n
128
GLU
146
B
GLU
147
n
129
GLU
147
B
GLN
148
n
130
GLN
148
B
ARG
149
n
131
ARG
149
B
GLY
150
n
132
GLY
150
B
ASP
151
n
133
ASP
151
B
TYR
152
n
134
TYR
152
B
ASP
153
n
135
ASP
153
B
LEU
154
n
136
LEU
154
B
ASN
155
n
137
ASN
155
B
ALA
156
n
138
ALA
156
B
VAL
157
n
139
VAL
157
B
ARG
158
n
140
ARG
158
B
LEU
159
n
141
LEU
159
B
CYS
160
n
142
CYS
160
B
PHE
161
n
143
PHE
161
B
GLN
162
n
144
GLN
162
B
VAL
163
n
145
VAL
163
B
THR
164
n
146
THR
164
B
VAL
165
n
147
VAL
165
B
ARG
166
n
148
ARG
166
B
ASP
167
n
149
ASP
167
B
PRO
168
n
150
PRO
168
B
ALA
169
n
151
ALA
169
B
GLY
170
n
152
GLY
170
B
ARG
171
n
153
ARG
171
B
PRO
172
n
154
PRO
172
B
LEU
173
n
155
LEU
173
B
LEU
174
n
156
LEU
174
B
LEU
175
n
157
LEU
175
B
THR
176
n
158
THR
176
B
PRO
177
n
159
PRO
177
B
VAL
178
n
160
VAL
178
B
LEU
179
n
161
LEU
179
B
SER
180
n
162
SER
180
B
HIS
181
n
163
HIS
181
B
PRO
182
n
164
PRO
182
B
ILE
183
n
165
ILE
183
B
PHE
184
n
166
PHE
184
B
ASP
185
n
167
ASP
185
B
ASN
186
n
168
ASN
186
B
ARG
187
n
169
ARG
187
B
ALA
188
n
170
ALA
188
B
PRO
189
n
171
PRO
189
B
ASN
190
n
172
ASN
190
B
THR
191
n
173
THR
191
B
ALA
192
n
174
ALA
192
B
GLU
193
n
175
GLU
193
B
LEU
194
n
176
LEU
194
B
LYS
195
n
177
LYS
195
B
ILE
196
n
178
ILE
196
B
CYS
197
n
179
CYS
197
B
ARG
198
n
180
ARG
198
B
VAL
199
n
181
VAL
199
B
ASN
200
n
182
ASN
200
B
ARG
201
n
183
ARG
201
B
ASN
202
n
184
ASN
202
B
SER
203
n
185
SER
203
B
GLY
204
n
186
GLY
204
B
SER
205
n
187
SER
205
B
CYS
206
n
188
CYS
206
B
LEU
207
n
189
LEU
207
B
GLY
208
n
190
GLY
208
B
GLY
209
n
191
GLY
209
B
ASP
210
n
192
ASP
210
B
GLU
211
n
193
GLU
211
B
ILE
212
n
194
ILE
212
B
PHE
213
n
195
PHE
213
B
LEU
214
n
196
LEU
214
B
LEU
215
n
197
LEU
215
B
CYS
216
n
198
CYS
216
B
ASP
217
n
199
ASP
217
B
LYS
218
n
200
LYS
218
B
VAL
219
n
201
VAL
219
B
GLN
220
n
202
GLN
220
B
LYS
221
n
203
LYS
221
B
GLU
222
n
204
GLU
222
B
ASP
223
n
205
ASP
223
B
ILE
224
n
206
ILE
224
B
GLU
225
n
207
GLU
225
B
VAL
226
n
208
VAL
226
B
TYR
227
n
209
TYR
227
B
PHE
228
n
210
PHE
228
B
THR
229
n
211
THR
229
B
GLY
230
n
212
GLY
230
B
PRO
231
n
213
PRO
231
B
GLY
232
n
214
GLY
232
B
TRP
233
n
215
TRP
233
B
GLU
234
n
216
GLU
234
B
ALA
235
n
217
ALA
235
B
ARG
236
n
218
ARG
236
B
GLY
237
n
219
GLY
237
B
SER
238
n
220
SER
238
B
PHE
239
n
221
PHE
239
B
SER
240
n
222
SER
240
B
GLN
241
n
223
GLN
241
B
ALA
242
n
224
ALA
242
B
ASP
243
n
225
ASP
243
B
VAL
244
n
226
VAL
244
B
HIS
245
n
227
HIS
245
B
ARG
246
n
228
ARG
246
B
GLN
247
n
229
GLN
247
B
VAL
248
n
230
VAL
248
B
ALA
249
n
231
ALA
249
B
ILE
250
n
232
ILE
250
B
VAL
251
n
233
VAL
251
B
PHE
252
n
234
PHE
252
B
ARG
253
n
235
ARG
253
B
THR
254
n
236
THR
254
B
PRO
255
n
237
PRO
255
B
PRO
256
n
238
PRO
256
B
TYR
257
n
239
TYR
257
B
ALA
258
n
240
ALA
258
B
ASP
259
n
241
ASP
259
B
PRO
260
n
242
PRO
260
B
SER
261
n
243
SER
261
B
LEU
262
n
244
LEU
262
B
GLN
263
n
245
GLN
263
B
ALA
264
n
246
ALA
264
B
PRO
265
n
247
PRO
265
B
VAL
266
n
248
VAL
266
B
ARG
267
n
249
ARG
267
B
VAL
268
n
250
VAL
268
B
SER
269
n
251
SER
269
B
MET
270
n
252
MET
270
B
GLN
271
n
253
GLN
271
B
LEU
272
n
254
LEU
272
B
ARG
273
n
255
ARG
273
B
ARG
274
n
256
ARG
274
B
PRO
275
n
257
PRO
275
B
SER
276
n
258
SER
276
B
ASP
277
n
259
ASP
277
B
ARG
278
n
260
ARG
278
B
GLU
279
n
261
GLU
279
B
LEU
280
n
262
LEU
280
B
SER
281
n
263
SER
281
B
GLU
282
n
264
GLU
282
B
PRO
283
n
265
PRO
283
B
MET
284
n
266
MET
284
B
GLU
285
n
267
GLU
285
B
PHE
286
n
268
PHE
286
B
GLN
287
n
269
GLN
287
B
TYR
288
n
270
TYR
288
B
LEU
289
n
271
LEU
289
B
PRO
290
n
272
PRO
290
B
ASP
291
n
273
ASP
291
B
author_defined_assembly
4
tetrameric
C
5IU
12
5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
A
5IU
12
DU
C
5IU
13
5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
A
5IU
13
DU
D
5IU
12
5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
B
5IU
12
DU
D
5IU
13
5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
B
5IU
13
DU
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
HIS
111
C
O
HIS
93
A
N
ILE
61
C
N
ILE
43
A
O
THR
60
C
O
THR
42
A
N
GLU
25
C
N
GLU
7
A
O
TYR
100
C
O
TYR
82
A
N
ILE
74
C
N
ILE
56
A
O
THR
71
C
O
THR
53
A
N
THR
164
C
N
THR
146
A
O
VAL
165
C
O
VAL
147
A
N
LEU
173
C
N
LEU
155
A
O
GLU
89
C
O
GLU
71
A
N
GLN
119
C
N
GLN
101
A
O
GLY
204
C
O
GLY
186
A
N
GLN
287
C
N
GLN
269
A
O
MET
284
C
O
MET
266
A
N
MET
270
C
N
MET
252
A
O
SER
269
C
O
SER
251
A
N
THR
229
C
N
THR
211
A
O
PHE
228
C
O
PHE
210
A
N
ALA
235
C
N
ALA
217
A
O
ILE
250
C
O
ILE
232
A
N
LEU
214
C
N
LEU
196
A
O
LEU
215
C
O
LEU
197
A
N
ARG
198
C
N
ARG
180
B
O
HIS
111
D
O
HIS
93
B
N
ILE
61
D
N
ILE
43
B
O
THR
60
D
O
THR
42
B
N
GLU
25
D
N
GLU
7
B
O
TYR
100
D
O
TYR
82
B
N
ILE
74
D
N
ILE
56
B
O
THR
71
D
O
THR
53
B
N
THR
164
D
N
THR
146
B
O
VAL
165
D
O
VAL
147
B
N
LEU
173
D
N
LEU
155
B
O
GLU
89
D
O
GLU
71
B
N
GLN
119
D
N
GLN
101
B
O
GLY
204
D
O
GLY
186
B
N
GLN
287
D
N
GLN
269
B
O
MET
284
D
O
MET
266
B
N
MET
270
D
N
MET
252
B
O
SER
269
D
O
SER
251
B
N
THR
229
D
N
THR
211
B
O
PHE
228
D
O
PHE
210
B
N
ALA
235
D
N
ALA
217
B
O
ILE
250
D
O
ILE
232
B
N
LEU
214
D
N
LEU
196
B
O
LEU
215
D
O
LEU
197
B
N
ARG
198
D
N
ARG
180
1
D
DG
3
0.049
SIDE CHAIN
1
D
DC
4
0.080
SIDE CHAIN
1
D
DC
14
0.078
SIDE CHAIN
1
D
DA
16
0.058
SIDE CHAIN
1
D
DC
18
0.074
SIDE CHAIN
1
D
DG
20
0.065
SIDE CHAIN
1
3.42
0.50
106.80
110.22
D
D
D
O4'
C1'
C2'
DG
DG
DG
6
6
6
N
1
2.26
0.30
108.30
110.56
D
D
D
O4'
C1'
N1
DT
DT
DT
11
11
11
N
1
2.25
0.30
108.30
110.55
D
D
D
O4'
C1'
N1
DC
DC
DC
15
15
15
N
1
10.22
1.50
119.30
129.52
A
A
A
C
N
CA
ASP
PRO
PRO
80
81
81
Y
1
10.23
1.50
119.30
129.53
B
B
B
C
N
CA
ASP
PRO
PRO
80
81
81
Y
1
A
ALA
43
-92.37
42.27
1
A
TYR
66
-177.48
121.32
1
A
PRO
81
-6.32
-70.54
1
A
HIS
83
-64.61
63.43
1
A
ARG
96
169.27
147.94
1
A
ASP
97
54.09
18.18
1
A
GLU
101
-172.58
137.19
1
A
ALA
102
-165.77
-167.43
1
A
ASP
125
-87.21
33.07
1
A
ASN
137
52.14
77.06
1
A
ASN
139
-159.10
74.62
1
A
HIS
142
29.31
42.72
1
A
VAL
165
-103.30
-165.29
1
A
THR
191
-166.52
33.85
1
A
ARG
201
-176.44
129.64
1
A
ASP
223
-167.55
50.64
1
A
TYR
257
-68.78
-177.97
1
B
GLU
25
-156.20
87.54
1
B
ARG
41
-43.14
-70.01
1
B
SER
42
51.85
-75.13
1
B
ALA
43
-179.51
134.46
1
B
SER
45
-163.96
101.57
1
B
GLU
49
-68.94
38.60
1
B
ARG
50
173.40
19.83
1
B
ASP
53
19.33
-129.93
1
B
LYS
56
-99.58
-154.04
1
B
THR
57
-173.89
135.46
1
B
TYR
66
-177.01
141.06
1
B
THR
78
-60.81
-113.46
1
B
LYS
79
-177.56
9.44
1
B
PRO
81
13.97
-62.83
1
B
HIS
83
-59.26
85.96
1
B
PRO
85
-64.61
97.11
1
B
HIS
88
-61.01
-170.34
1
B
ASP
94
65.19
-4.72
1
B
GLU
101
-169.15
112.82
1
B
LYS
123
-69.55
9.43
1
B
ASN
139
177.54
84.04
1
B
ARG
187
-69.29
5.65
1
B
THR
191
-153.28
-31.06
1
B
PRO
231
-42.88
101.13
1
B
GLN
247
69.58
-11.36
1
B
TYR
257
-68.34
-176.33
1
B
SER
261
-146.17
41.85
PARHCSDX.PRO
TOPHCSDX.PRO
DNA-RNA.PARAM
DNA-RNA.TOP
PARAM11.WAT
TOPH11.WAT
45.1
0.308
0.006
0.213
0.213
2.40
6.00
2752
27086
10.2
81.4
RANDOM
10000000.0
0.001
1
RESTRAINED
THROUGHOUT
2.0
0.44
0.32
6.00
0.49
0.44
2.40
6.00
128
5314
20
810
4356
0.010
1.7
25.8
1.62
2.56
1.50
4.08
2.00
3.81
2.00
5.59
2.50
0.385
0.022
0.346
2.54
297
2621
6
10.2
53.0
34.2
2.4
30.0
2RAM
31656
0.053
1
3.3
90.0
refinement
X-PLOR
3.843
data reduction
DENZO
data scaling
SCALEPACK
A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
A
LEU
126
C
LEU
108
HELX_P
A
GLN
135
C
GLN
117
1
1
10
A
GLN
241
C
GLN
223
HELX_P
A
ASP
243
C
ASP
225
5
2
3
A
PRO
275
C
PRO
257
HELX_P
A
ASP
277
C
ASP
259
5
3
3
B
LYS
37
D
LYS
19
HELX_P
B
GLU
39
D
GLU
21
5
4
3
B
LEU
126
D
LEU
108
HELX_P
B
GLN
135
D
GLN
117
1
5
10
B
LYS
221
D
LYS
203
HELX_P
B
ASP
223
D
ASP
205
5
6
3
B
GLN
241
D
GLN
223
HELX_P
B
ASP
243
D
ASP
225
5
7
3
covale
1.598
both
C
DT
11
A
O3'
DT
11
1_555
C
5IU
12
A
P
5IU
12
1_555
covale
1.606
both
C
5IU
12
A
O3'
5IU
12
1_555
C
5IU
13
A
P
5IU
13
1_555
covale
1.596
both
C
5IU
13
A
O3'
5IU
13
1_555
C
DC
14
A
P
DC
14
1_555
covale
1.606
both
D
DT
11
B
O3'
DT
11
1_555
D
5IU
12
B
P
5IU
12
1_555
covale
1.603
both
D
5IU
12
B
O3'
5IU
12
1_555
D
5IU
13
B
P
5IU
13
1_555
covale
1.588
both
D
5IU
13
B
O3'
5IU
13
1_555
D
DC
14
B
P
DC
14
1_555
hydrog
DC-DC MISPAIR
C
DC
1
A
O2
DC
1
1_555
D
DC
19
B
N4
DC
19
1_555
hydrog
DC-DG PAIR
C
DC
1
A
O2
DC
1
1_555
D
DG
20
B
N1
DG
20
1_555
hydrog
DG-DC PAIR
C
DG
2
A
O6
DG
2
1_555
D
DC
18
B
N4
DC
18
1_555
hydrog
WATSON-CRICK
C
DG
2
A
N1
DG
2
1_555
D
DC
19
B
N3
DC
19
1_555
hydrog
WATSON-CRICK
C
DG
2
A
N2
DG
2
1_555
D
DC
19
B
O2
DC
19
1_555
hydrog
WATSON-CRICK
C
DG
2
A
O6
DG
2
1_555
D
DC
19
B
N4
DC
19
1_555
hydrog
WATSON-CRICK
C
DG
3
A
N1
DG
3
1_555
D
DC
18
B
N3
DC
18
1_555
hydrog
WATSON-CRICK
C
DG
3
A
N2
DG
3
1_555
D
DC
18
B
O2
DC
18
1_555
hydrog
WATSON-CRICK
C
DG
3
A
O6
DG
3
1_555
D
DC
18
B
N4
DC
18
1_555
hydrog
DC-DG PAIR
C
DC
4
A
O2
DC
4
1_555
D
DG
17
B
N2
DG
17
1_555
hydrog
WATSON-CRICK
C
DT
5
A
N3
DT
5
1_555
D
DA
16
B
N1
DA
16
1_555
hydrog
WATSON-CRICK
C
DT
5
A
O4
DT
5
1_555
D
DA
16
B
N6
DA
16
1_555
hydrog
WATSON-CRICK
C
DG
6
A
N1
DG
6
1_555
D
DC
15
B
N3
DC
15
1_555
hydrog
WATSON-CRICK
C
DG
6
A
N2
DG
6
1_555
D
DC
15
B
O2
DC
15
1_555
hydrog
WATSON-CRICK
C
DG
6
A
O6
DG
6
1_555
D
DC
15
B
N4
DC
15
1_555
hydrog
WATSON-CRICK
C
DG
7
A
N1
DG
7
1_555
D
DC
14
B
N3
DC
14
1_555
hydrog
WATSON-CRICK
C
DG
7
A
N2
DG
7
1_555
D
DC
14
B
O2
DC
14
1_555
hydrog
WATSON-CRICK
C
DG
7
A
O6
DG
7
1_555
D
DC
14
B
N4
DC
14
1_555
hydrog
WATSON-CRICK
C
DA
8
A
N1
DA
8
1_555
D
5IU
13
B
N3
5IU
13
1_555
hydrog
WATSON-CRICK
C
DA
8
A
N6
DA
8
1_555
D
5IU
13
B
O4
5IU
13
1_555
hydrog
WATSON-CRICK
C
DA
9
A
N1
DA
9
1_555
D
5IU
12
B
N3
5IU
12
1_555
hydrog
WATSON-CRICK
C
DA
9
A
N6
DA
9
1_555
D
5IU
12
B
O4
5IU
12
1_555
hydrog
WATSON-CRICK
C
DA
10
A
N1
DA
10
1_555
D
DT
11
B
N3
DT
11
1_555
hydrog
WATSON-CRICK
C
DA
10
A
N6
DA
10
1_555
D
DT
11
B
O4
DT
11
1_555
hydrog
WATSON-CRICK
C
DT
11
A
N3
DT
11
1_555
D
DA
10
B
N1
DA
10
1_555
hydrog
WATSON-CRICK
C
DT
11
A
O4
DT
11
1_555
D
DA
10
B
N6
DA
10
1_555
hydrog
WATSON-CRICK
C
5IU
12
A
N3
5IU
12
1_555
D
DA
9
B
N1
DA
9
1_555
hydrog
WATSON-CRICK
C
5IU
12
A
O4
5IU
12
1_555
D
DA
9
B
N6
DA
9
1_555
hydrog
WATSON-CRICK
C
5IU
13
A
N3
5IU
13
1_555
D
DA
8
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
C
5IU
13
A
O4
5IU
13
1_555
D
DA
8
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
C
DC
14
A
N3
DC
14
1_555
D
DG
7
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
14
A
N4
DC
14
1_555
D
DG
7
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
14
A
O2
DC
14
1_555
D
DG
7
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
C
DC
15
A
N3
DC
15
1_555
D
DG
6
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
C
DC
15
A
N4
DC
15
1_555
D
DG
6
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
C
DC
15
A
O2
DC
15
1_555
D
DG
6
B
N2
DG
6
1_555
hydrog
DA-DC MISPAIR
C
DA
16
A
N1
DA
16
1_555
D
DC
4
B
N4
DC
4
1_555
hydrog
DA-DT PAIR
C
DA
16
A
N1
DA
16
1_555
D
DT
5
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
C
DG
17
A
N1
DG
17
1_555
D
DC
4
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
C
DG
17
A
N2
DG
17
1_555
D
DC
4
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
C
DG
17
A
O6
DG
17
1_555
D
DC
4
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
C
DC
18
A
N3
DC
18
1_555
D
DG
3
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
18
A
N4
DC
18
1_555
D
DG
3
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
18
A
O2
DC
18
1_555
D
DG
3
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
19
A
N3
DC
19
1_555
D
DG
2
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
19
A
N4
DC
19
1_555
D
DG
2
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
19
A
O2
DC
19
1_555
D
DG
2
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
C
DG
20
A
N1
DG
20
1_555
D
DC
1
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
C
DG
20
A
N2
DG
20
1_555
D
DC
1
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
C
DG
20
A
O6
DG
20
1_555
D
DC
1
B
N4
DC
1
1_555
TRANSCRIPTION/DNA
COMPLEX (TRANSCRIPTION FACTOR-DNA), DNA-BINDING, TRANSCRIPTION REGULATION, ACTIVATOR NUCLEAR PROTEIN, PHOSPHORYLATION, CONFORMATION, TRANSCRIPTION-DNA COMPLEX
TF65_MOUSE
UNP
2
19
Q04207
2RAM
PDB
1
2RAM
19
291
2RAM
19
291
Q04207
A
1
1
273
19
291
2RAM
19
291
Q04207
B
1
1
273
1
20
2RAM
1
20
2RAM
C
2
1
20
1
20
2RAM
1
20
2RAM
D
2
1
20
3
4
2
5
3
3
4
2
5
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
110
C
ILE
92
A
PHE
113
C
PHE
95
A
PRO
59
C
PRO
41
A
ASN
64
C
ASN
46
A
TYR
20
C
TYR
2
A
GLU
25
C
GLU
7
A
TYR
100
C
TYR
82
A
ASP
103
C
ASP
85
A
THR
71
C
THR
53
A
THR
78
C
THR
60
A
VAL
157
C
VAL
139
A
ARG
166
C
ARG
148
A
PRO
172
C
PRO
154
A
LEU
174
C
LEU
156
A
GLU
89
C
GLU
71
A
VAL
91
C
VAL
73
A
GLY
117
C
GLY
99
A
GLN
119
C
GLN
101
A
SER
203
C
SER
185
A
SER
205
C
SER
187
A
MET
284
C
MET
266
A
LEU
289
C
LEU
271
A
VAL
266
C
VAL
248
A
ARG
273
C
ARG
255
A
GLU
225
C
GLU
207
A
GLY
230
C
GLY
212
A
TRP
233
C
TRP
215
A
ARG
236
C
ARG
218
A
ALA
249
C
ALA
231
A
ARG
253
C
ARG
235
A
GLU
211
C
GLU
193
A
CYS
216
C
CYS
198
A
ILE
196
C
ILE
178
A
VAL
199
C
VAL
181
B
ILE
110
D
ILE
92
B
PHE
113
D
PHE
95
B
PRO
59
D
PRO
41
B
ASN
64
D
ASN
46
B
TYR
20
D
TYR
2
B
GLU
25
D
GLU
7
B
TYR
99
D
TYR
81
B
ALA
102
D
ALA
84
B
GLY
70
D
GLY
52
B
VAL
77
D
VAL
59
B
ARG
158
D
ARG
140
B
ARG
166
D
ARG
148
B
PRO
172
D
PRO
154
B
LEU
174
D
LEU
156
B
GLU
89
D
GLU
71
B
VAL
91
D
VAL
73
B
GLY
117
D
GLY
99
B
GLN
119
D
GLN
101
B
SER
203
D
SER
185
B
SER
205
D
SER
187
B
MET
284
D
MET
266
B
LEU
289
D
LEU
271
B
VAL
266
D
VAL
248
B
ARG
273
D
ARG
255
B
GLU
225
D
GLU
207
B
GLY
230
D
GLY
212
B
TRP
233
D
TRP
215
B
ARG
236
D
ARG
218
B
ALA
249
D
ALA
231
B
ARG
253
D
ARG
235
B
GLU
211
D
GLU
193
B
CYS
216
D
CYS
198
B
ILE
196
D
ILE
178
B
VAL
199
D
VAL
181
BINDING SITE FOR RESIDUE DTV A 501
A
DTV
501
Software
2
BINDING SITE FOR RESIDUE DTV B 502
B
DTV
502
Software
3
A
ASP
80
C
ASP
62
2
1_555
A
ASP
153
C
ASP
135
2
1_555
B
ASP
80
D
ASP
62
3
1_555
B
ASP
151
D
ASP
133
3
1_555
B
ASP
153
D
ASP
135
3
1_555
19
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