0.016539
0.009549
0.000000
0.000000
0.019098
0.000000
0.000000
0.000000
0.010416
0.00000
0.00000
0.00000
Graves, A.P.
Boyce, S.E.
Shoichet, B.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
60.462
60.462
96.004
C8 H9 Cl O
156.609
(2-chloroethoxy)benzene
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
C
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
N
7
N
O
N
8
N
C
N
9
N
C
N
10
N
CL
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
N
N
21
S
C
N
22
N
C
N
23
N
O
N
24
N
C
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
N
N
34
S
C
N
35
N
C
N
36
N
O
N
37
N
C
N
38
N
C
N
39
N
C
N
40
N
N
N
41
N
C
N
42
N
N
N
43
N
N
N
44
N
O
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
N
N
61
S
C
N
62
N
C
N
63
N
O
N
64
N
C
N
65
N
C
N
66
N
O
N
67
N
N
N
68
N
O
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
N
N
78
S
C
N
79
N
C
N
80
N
O
N
81
N
C
N
82
N
C
N
83
N
O
N
84
N
O
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
N
N
94
R
C
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
S
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
S
C
N
109
N
C
N
110
N
O
N
111
N
C
N
112
N
C
N
113
N
C
N
114
N
O
N
115
N
N
N
116
N
O
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
S
C
N
129
N
C
N
130
N
O
N
131
N
C
N
132
N
C
N
133
N
C
N
134
N
O
N
135
N
O
N
136
N
O
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
Y
161
N
C
Y
162
N
N
Y
163
N
C
Y
164
N
C
Y
165
N
N
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
S
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
O
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
N
N
225
S
C
N
226
N
C
N
227
N
O
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
N
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
N
N
250
S
C
N
251
N
C
N
252
N
O
N
253
N
C
N
254
N
C
N
255
N
S
N
256
N
C
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
P
N
293
N
O
N
294
N
O
N
295
N
O
N
296
N
O
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
N
C
N
302
N
C
N
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
O
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
R
C
N
333
N
O
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
N
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
N
383
N
O
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
N
401
N
C
N
402
N
C
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
Y
1
N
doub
Y
2
N
sing
Y
3
N
sing
Y
4
N
doub
Y
5
N
sing
Y
6
N
doub
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
doub
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
Y
159
N
sing
Y
160
N
doub
Y
161
N
doub
N
162
N
sing
Y
163
N
sing
N
164
N
sing
Y
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
Y
267
N
doub
Y
268
N
sing
Y
269
N
sing
N
270
N
sing
Y
271
N
doub
N
272
N
sing
Y
273
N
doub
N
274
N
sing
Y
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
Y
340
N
doub
Y
341
N
sing
Y
342
N
sing
N
343
N
sing
Y
344
N
doub
Y
345
N
sing
Y
346
N
sing
N
347
N
sing
Y
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
377
914
934
10.1016/j.jmb.2008.01.049
18280498
Rescoring docking hit lists for model cavity sites: predictions and experimental testing.
2008
10.2210/pdb2ray/pdb
pdb_00002ray
110
1
IMAGE PLATE
2006-11-26
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
18359.023
Lysozyme
3.2.1.17
L99A
1
man
polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
156.609
(2-chloroethoxy)benzene
1
syn
non-polymer
18.015
water
212
nat
water
Lysis protein; Muramidase; Endolysin
E.C.3.2.1.17
no
no
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRAAAINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YK
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRAAAINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YK
X
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
T4-like viruses
Enterobacteria phage T4 sensu lato
Escherichia
sample
E
10665
Enterobacteria phage T4
562
Escherichia coli
plasmid
M13
1
2.76
55.41
hanging drop
7.1
2.2M sodium-potassium phosphate, 0.05M beta-mercaptoethanol, 0.05M 2-hydroxyethyldisulfide, pH 7.1, hanging drop, temperature 277K
277
pdbx_unobs_or_zero_occ_atoms
software
database_2
pdbx_unobs_or_zero_occ_atoms
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Advisory
Refinement description
Advisory
Database references
Derived calculations
Data collection
Refinement description
1
0
2008-03-18
1
1
2011-07-13
1
2
2017-10-25
1
3
2021-10-20
1
4
2023-08-30
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
N
RCSB
Y
RCSB
2007-09-17
REL
REL
PO4
PHOSPHATE ION
258
(2-chloroethoxy)benzene
HOH
water
184L
PDB
experimental model
PO4
1001
2
PO4
PO4
1001
X
258
2001
3
258
258
2001
X
HOH
1
4
HOH
HOH
2002
X
HOH
2
4
HOH
HOH
2003
X
HOH
3
4
HOH
HOH
2004
X
HOH
4
4
HOH
HOH
2005
X
HOH
5
4
HOH
HOH
2006
X
HOH
6
4
HOH
HOH
2007
X
HOH
7
4
HOH
HOH
2008
X
HOH
8
4
HOH
HOH
2009
X
HOH
9
4
HOH
HOH
2010
X
HOH
10
4
HOH
HOH
2011
X
HOH
11
4
HOH
HOH
2012
X
HOH
12
4
HOH
HOH
2013
X
HOH
13
4
HOH
HOH
2014
X
HOH
14
4
HOH
HOH
2015
X
HOH
15
4
HOH
HOH
2016
X
HOH
16
4
HOH
HOH
2017
X
HOH
17
4
HOH
HOH
2018
X
HOH
18
4
HOH
HOH
2019
X
HOH
19
4
HOH
HOH
2020
X
HOH
20
4
HOH
HOH
2021
X
HOH
21
4
HOH
HOH
2022
X
HOH
22
4
HOH
HOH
2023
X
HOH
23
4
HOH
HOH
2024
X
HOH
24
4
HOH
HOH
2025
X
HOH
25
4
HOH
HOH
2026
X
HOH
26
4
HOH
HOH
2027
X
HOH
27
4
HOH
HOH
2028
X
HOH
28
4
HOH
HOH
2029
X
HOH
29
4
HOH
HOH
2030
X
HOH
30
4
HOH
HOH
2031
X
HOH
31
4
HOH
HOH
2032
X
HOH
32
4
HOH
HOH
2033
X
HOH
33
4
HOH
HOH
2034
X
HOH
34
4
HOH
HOH
2035
X
HOH
35
4
HOH
HOH
2036
X
HOH
36
4
HOH
HOH
2037
X
HOH
37
4
HOH
HOH
2038
X
HOH
38
4
HOH
HOH
2039
X
HOH
39
4
HOH
HOH
2040
X
HOH
40
4
HOH
HOH
2041
X
HOH
41
4
HOH
HOH
2042
X
HOH
42
4
HOH
HOH
2043
X
HOH
43
4
HOH
HOH
2044
X
HOH
44
4
HOH
HOH
2045
X
HOH
45
4
HOH
HOH
2046
X
HOH
46
4
HOH
HOH
2047
X
HOH
47
4
HOH
HOH
2048
X
HOH
48
4
HOH
HOH
2049
X
HOH
49
4
HOH
HOH
2050
X
HOH
50
4
HOH
HOH
2051
X
HOH
51
4
HOH
HOH
2052
X
HOH
52
4
HOH
HOH
2053
X
HOH
53
4
HOH
HOH
2054
X
HOH
54
4
HOH
HOH
2055
X
HOH
55
4
HOH
HOH
2056
X
HOH
56
4
HOH
HOH
2057
X
HOH
57
4
HOH
HOH
2058
X
HOH
58
4
HOH
HOH
2059
X
HOH
59
4
HOH
HOH
2060
X
HOH
60
4
HOH
HOH
2061
X
HOH
61
4
HOH
HOH
2062
X
HOH
62
4
HOH
HOH
2063
X
HOH
63
4
HOH
HOH
2064
X
HOH
64
4
HOH
HOH
2065
X
HOH
65
4
HOH
HOH
2066
X
HOH
66
4
HOH
HOH
2067
X
HOH
67
4
HOH
HOH
2068
X
HOH
68
4
HOH
HOH
2069
X
HOH
69
4
HOH
HOH
2070
X
HOH
70
4
HOH
HOH
2071
X
HOH
71
4
HOH
HOH
2072
X
HOH
72
4
HOH
HOH
2073
X
HOH
73
4
HOH
HOH
2074
X
HOH
74
4
HOH
HOH
2075
X
HOH
75
4
HOH
HOH
2076
X
HOH
76
4
HOH
HOH
2077
X
HOH
77
4
HOH
HOH
2078
X
HOH
78
4
HOH
HOH
2079
X
HOH
79
4
HOH
HOH
2080
X
HOH
80
4
HOH
HOH
2081
X
HOH
81
4
HOH
HOH
2082
X
HOH
82
4
HOH
HOH
2083
X
HOH
83
4
HOH
HOH
2084
X
HOH
84
4
HOH
HOH
2085
X
HOH
85
4
HOH
HOH
2086
X
HOH
86
4
HOH
HOH
2087
X
HOH
87
4
HOH
HOH
2088
X
HOH
88
4
HOH
HOH
2089
X
HOH
89
4
HOH
HOH
2090
X
HOH
90
4
HOH
HOH
2091
X
HOH
91
4
HOH
HOH
2092
X
HOH
92
4
HOH
HOH
2093
X
HOH
93
4
HOH
HOH
2094
X
HOH
94
4
HOH
HOH
2095
X
HOH
95
4
HOH
HOH
2096
X
HOH
96
4
HOH
HOH
2097
X
HOH
97
4
HOH
HOH
2098
X
HOH
98
4
HOH
HOH
2099
X
HOH
99
4
HOH
HOH
2100
X
HOH
100
4
HOH
HOH
2101
X
HOH
101
4
HOH
HOH
2102
X
HOH
102
4
HOH
HOH
2103
X
HOH
103
4
HOH
HOH
2104
X
HOH
104
4
HOH
HOH
2105
X
HOH
105
4
HOH
HOH
2106
X
HOH
106
4
HOH
HOH
2107
X
HOH
107
4
HOH
HOH
2108
X
HOH
108
4
HOH
HOH
2109
X
HOH
109
4
HOH
HOH
2110
X
HOH
110
4
HOH
HOH
2111
X
HOH
111
4
HOH
HOH
2112
X
HOH
112
4
HOH
HOH
2113
X
HOH
113
4
HOH
HOH
2114
X
HOH
114
4
HOH
HOH
2115
X
HOH
115
4
HOH
HOH
2116
X
HOH
116
4
HOH
HOH
2117
X
HOH
117
4
HOH
HOH
2118
X
HOH
118
4
HOH
HOH
2119
X
HOH
119
4
HOH
HOH
2120
X
HOH
120
4
HOH
HOH
2121
X
HOH
121
4
HOH
HOH
2122
X
HOH
122
4
HOH
HOH
2123
X
HOH
123
4
HOH
HOH
2124
X
HOH
124
4
HOH
HOH
2125
X
HOH
125
4
HOH
HOH
2126
X
HOH
126
4
HOH
HOH
2127
X
HOH
127
4
HOH
HOH
2128
X
HOH
128
4
HOH
HOH
2129
X
HOH
129
4
HOH
HOH
2130
X
HOH
130
4
HOH
HOH
2131
X
HOH
131
4
HOH
HOH
2132
X
HOH
132
4
HOH
HOH
2133
X
HOH
133
4
HOH
HOH
2134
X
HOH
134
4
HOH
HOH
2135
X
HOH
135
4
HOH
HOH
2136
X
HOH
136
4
HOH
HOH
2137
X
HOH
137
4
HOH
HOH
2138
X
HOH
138
4
HOH
HOH
2139
X
HOH
139
4
HOH
HOH
2140
X
HOH
140
4
HOH
HOH
2141
X
HOH
141
4
HOH
HOH
2142
X
HOH
142
4
HOH
HOH
2143
X
HOH
143
4
HOH
HOH
2144
X
HOH
144
4
HOH
HOH
2145
X
HOH
145
4
HOH
HOH
2146
X
HOH
146
4
HOH
HOH
2147
X
HOH
147
4
HOH
HOH
2148
X
HOH
148
4
HOH
HOH
2149
X
HOH
149
4
HOH
HOH
2150
X
HOH
150
4
HOH
HOH
2151
X
HOH
151
4
HOH
HOH
2152
X
HOH
152
4
HOH
HOH
2153
X
HOH
153
4
HOH
HOH
2154
X
HOH
154
4
HOH
HOH
2155
X
HOH
155
4
HOH
HOH
2156
X
HOH
156
4
HOH
HOH
2157
X
HOH
157
4
HOH
HOH
2158
X
HOH
158
4
HOH
HOH
2159
X
HOH
159
4
HOH
HOH
2160
X
HOH
160
4
HOH
HOH
2161
X
HOH
161
4
HOH
HOH
2162
X
HOH
162
4
HOH
HOH
2163
X
HOH
163
4
HOH
HOH
2164
X
HOH
164
4
HOH
HOH
2165
X
HOH
165
4
HOH
HOH
2166
X
HOH
166
4
HOH
HOH
2167
X
HOH
167
4
HOH
HOH
2168
X
HOH
168
4
HOH
HOH
2169
X
HOH
169
4
HOH
HOH
2170
X
HOH
170
4
HOH
HOH
2171
X
HOH
171
4
HOH
HOH
2172
X
HOH
172
4
HOH
HOH
2173
X
HOH
173
4
HOH
HOH
2174
X
HOH
174
4
HOH
HOH
2175
X
HOH
175
4
HOH
HOH
2176
X
HOH
176
4
HOH
HOH
2177
X
HOH
177
4
HOH
HOH
2178
X
HOH
178
4
HOH
HOH
2179
X
HOH
179
4
HOH
HOH
2180
X
HOH
180
4
HOH
HOH
2181
X
HOH
181
4
HOH
HOH
2182
X
HOH
182
4
HOH
HOH
2183
X
HOH
183
4
HOH
HOH
2184
X
HOH
184
4
HOH
HOH
2185
X
HOH
185
4
HOH
HOH
2186
X
HOH
186
4
HOH
HOH
2187
X
HOH
187
4
HOH
HOH
2188
X
HOH
188
4
HOH
HOH
2189
X
HOH
189
4
HOH
HOH
2190
X
HOH
190
4
HOH
HOH
2191
X
HOH
191
4
HOH
HOH
2192
X
HOH
192
4
HOH
HOH
2193
X
HOH
193
4
HOH
HOH
2194
X
HOH
194
4
HOH
HOH
2195
X
HOH
195
4
HOH
HOH
2196
X
HOH
196
4
HOH
HOH
2197
X
HOH
197
4
HOH
HOH
2198
X
HOH
198
4
HOH
HOH
2199
X
HOH
199
4
HOH
HOH
2200
X
HOH
200
4
HOH
HOH
2201
X
HOH
201
4
HOH
HOH
2202
X
HOH
202
4
HOH
HOH
2203
X
HOH
203
4
HOH
HOH
2204
X
HOH
204
4
HOH
HOH
2205
X
HOH
205
4
HOH
HOH
2206
X
HOH
206
4
HOH
HOH
2207
X
HOH
207
4
HOH
HOH
2208
X
HOH
208
4
HOH
HOH
2209
X
HOH
209
4
HOH
HOH
2210
X
HOH
210
4
HOH
HOH
2211
X
HOH
211
4
HOH
HOH
2212
X
HOH
212
4
HOH
HOH
2213
X
MET
1
n
1
MET
1
X
ASN
2
n
2
ASN
2
X
ILE
3
n
3
ILE
3
X
PHE
4
n
4
PHE
4
X
GLU
5
n
5
GLU
5
X
MET
6
n
6
MET
6
X
LEU
7
n
7
LEU
7
X
ARG
8
n
8
ARG
8
X
ILE
9
n
9
ILE
9
X
ASP
10
n
10
ASP
10
X
GLU
11
n
11
GLU
11
X
GLY
12
n
12
GLY
12
X
LEU
13
n
13
LEU
13
X
ARG
14
n
14
ARG
14
X
LEU
15
n
15
LEU
15
X
LYS
16
n
16
LYS
16
X
ILE
17
n
17
ILE
17
X
TYR
18
n
18
TYR
18
X
LYS
19
n
19
LYS
19
X
ASP
20
n
20
ASP
20
X
THR
21
n
21
THR
21
X
GLU
22
n
22
GLU
22
X
GLY
23
n
23
GLY
23
X
TYR
24
n
24
TYR
24
X
TYR
25
n
25
TYR
25
X
THR
26
n
26
THR
26
X
ILE
27
n
27
ILE
27
X
GLY
28
n
28
GLY
28
X
ILE
29
n
29
ILE
29
X
GLY
30
n
30
GLY
30
X
HIS
31
n
31
HIS
31
X
LEU
32
n
32
LEU
32
X
LEU
33
n
33
LEU
33
X
THR
34
n
34
THR
34
X
LYS
35
n
35
LYS
35
X
SER
36
n
36
SER
36
X
PRO
37
n
37
PRO
37
X
SER
38
n
38
SER
38
X
LEU
39
n
39
LEU
39
X
ASN
40
n
40
ASN
40
X
ALA
41
n
41
ALA
41
X
ALA
42
n
42
ALA
42
X
LYS
43
n
43
LYS
43
X
SER
44
n
44
SER
44
X
GLU
45
n
45
GLU
45
X
LEU
46
n
46
LEU
46
X
ASP
47
n
47
ASP
47
X
LYS
48
n
48
LYS
48
X
ALA
49
n
49
ALA
49
X
ILE
50
n
50
ILE
50
X
GLY
51
n
51
GLY
51
X
ARG
52
n
52
ARG
52
X
ASN
53
n
53
ASN
53
X
THR
54
n
54
THR
54
X
ASN
55
n
55
ASN
55
X
GLY
56
n
56
GLY
56
X
VAL
57
n
57
VAL
57
X
ILE
58
n
58
ILE
58
X
THR
59
n
59
THR
59
X
LYS
60
n
60
LYS
60
X
ASP
61
n
61
ASP
61
X
GLU
62
n
62
GLU
62
X
ALA
63
n
63
ALA
63
X
GLU
64
n
64
GLU
64
X
LYS
65
n
65
LYS
65
X
LEU
66
n
66
LEU
66
X
PHE
67
n
67
PHE
67
X
ASN
68
n
68
ASN
68
X
GLN
69
n
69
GLN
69
X
ASP
70
n
70
ASP
70
X
VAL
71
n
71
VAL
71
X
ASP
72
n
72
ASP
72
X
ALA
73
n
73
ALA
73
X
ALA
74
n
74
ALA
74
X
VAL
75
n
75
VAL
75
X
ARG
76
n
76
ARG
76
X
GLY
77
n
77
GLY
77
X
ILE
78
n
78
ILE
78
X
LEU
79
n
79
LEU
79
X
ARG
80
n
80
ARG
80
X
ASN
81
n
81
ASN
81
X
ALA
82
n
82
ALA
82
X
LYS
83
n
83
LYS
83
X
LEU
84
n
84
LEU
84
X
LYS
85
n
85
LYS
85
X
PRO
86
n
86
PRO
86
X
VAL
87
n
87
VAL
87
X
TYR
88
n
88
TYR
88
X
ASP
89
n
89
ASP
89
X
SER
90
n
90
SER
90
X
LEU
91
n
91
LEU
91
X
ASP
92
n
92
ASP
92
X
ALA
93
n
93
ALA
93
X
VAL
94
n
94
VAL
94
X
ARG
95
n
95
ARG
95
X
ARG
96
n
96
ARG
96
X
ALA
97
n
97
ALA
97
X
ALA
98
n
98
ALA
98
X
ALA
99
n
99
ALA
99
X
ILE
100
n
100
ILE
100
X
ASN
101
n
101
ASN
101
X
MET
102
n
102
MET
102
X
VAL
103
n
103
VAL
103
X
PHE
104
n
104
PHE
104
X
GLN
105
n
105
GLN
105
X
MET
106
n
106
MET
106
X
GLY
107
n
107
GLY
107
X
GLU
108
n
108
GLU
108
X
THR
109
n
109
THR
109
X
GLY
110
n
110
GLY
110
X
VAL
111
n
111
VAL
111
X
ALA
112
n
112
ALA
112
X
GLY
113
n
113
GLY
113
X
PHE
114
n
114
PHE
114
X
THR
115
n
115
THR
115
X
ASN
116
n
116
ASN
116
X
SER
117
n
117
SER
117
X
LEU
118
n
118
LEU
118
X
ARG
119
n
119
ARG
119
X
MET
120
n
120
MET
120
X
LEU
121
n
121
LEU
121
X
GLN
122
n
122
GLN
122
X
GLN
123
n
123
GLN
123
X
LYS
124
n
124
LYS
124
X
ARG
125
n
125
ARG
125
X
TRP
126
n
126
TRP
126
X
ASP
127
n
127
ASP
127
X
GLU
128
n
128
GLU
128
X
ALA
129
n
129
ALA
129
X
ALA
130
n
130
ALA
130
X
VAL
131
n
131
VAL
131
X
ASN
132
n
132
ASN
132
X
LEU
133
n
133
LEU
133
X
ALA
134
n
134
ALA
134
X
LYS
135
n
135
LYS
135
X
SER
136
n
136
SER
136
X
ARG
137
n
137
ARG
137
X
TRP
138
n
138
TRP
138
X
TYR
139
n
139
TYR
139
X
ASN
140
n
140
ASN
140
X
GLN
141
n
141
GLN
141
X
THR
142
n
142
THR
142
X
PRO
143
n
143
PRO
143
X
ASN
144
n
144
ASN
144
X
ARG
145
n
145
ARG
145
X
ALA
146
n
146
ALA
146
X
LYS
147
n
147
LYS
147
X
ARG
148
n
148
ARG
148
X
VAL
149
n
149
VAL
149
X
ILE
150
n
150
ILE
150
X
THR
151
n
151
THR
151
X
THR
152
n
152
THR
152
X
PHE
153
n
153
PHE
153
X
ARG
154
n
154
ARG
154
X
THR
155
n
155
THR
155
X
GLY
156
n
156
GLY
156
X
THR
157
n
157
THR
157
X
TRP
158
n
158
TRP
158
X
ASP
159
n
159
ASP
159
X
ALA
160
n
160
ALA
160
X
TYR
161
n
161
TYR
161
X
LYS
162
n
162
LYS
162
X
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
X
N
TYR
18
A
N
TYR
18
X
O
THR
26
A
O
THR
26
X
N
ILE
27
A
N
ILE
27
X
O
HIS
31
A
O
HIS
31
1
X
CD
LYS
16
A
CD
LYS
16
1
Y
1
X
CE
LYS
16
A
CE
LYS
16
1
Y
1
X
NZ
LYS
16
A
NZ
LYS
16
1
Y
1
X
CG
ARG
76
A
CG
ARG
76
0
Y
1
X
CD
ARG
76
A
CD
ARG
76
0
Y
1
X
NE
ARG
76
A
NE
ARG
76
0
Y
1
X
CZ
ARG
76
A
CZ
ARG
76
0
Y
1
X
NH1
ARG
76
A
NH1
ARG
76
0
Y
1
X
NH2
ARG
76
A
NH2
ARG
76
0
Y
1
X
CZ
ARG
80
A
CZ
ARG
80
1
Y
1
X
NH1
ARG
80
A
NH1
ARG
80
1
Y
1
X
NH2
ARG
80
A
NH2
ARG
80
1
Y
1
X
CE
LYS
83
A
CE
LYS
83
1
Y
1
X
NZ
LYS
83
A
NZ
LYS
83
1
Y
1
X
NZ
LYS
147
A
NZ
LYS
147
1
Y
1
X
CB
LYS
162
A
CB
LYS
162
0
Y
1
X
CG
LYS
162
A
CG
LYS
162
0
Y
1
X
CD
LYS
162
A
CD
LYS
162
0
Y
1
X
CE
LYS
162
A
CE
LYS
162
0
Y
1
X
NZ
LYS
162
A
NZ
LYS
162
0
Y
1
X
X
O
O
HOH
HOH
2094
2180
2.12
1_555
5_555
1
X
X
O
O
GLY
HOH
113
2140
2.17
1_555
2_654
1
X
ILE
29
-101.46
73.53
20.548
0.120
0.060
0.000
0.120
0.000
-0.190
0.954
0.942
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.212
0.187
0.188
0.188
1.798
52.340
994
19464
19408
5.100
99.710
2.374
0.075
RANDOM
1
THROUGHOUT
0.00
0.119
0.111
0.800
0.800
1.200
184L
MAXIMUM LIKELIHOOD
MASK
1.798
52.340
213
1513
15
0
1285
0.014
0.022
1309
1.249
1.959
1766
5.250
5.000
163
32.478
23.833
60
13.223
15.000
233
16.870
15.000
11
0.088
0.200
196
0.005
0.020
977
0.197
0.200
649
0.303
0.200
908
0.152
0.200
163
0.183
0.200
32
0.207
0.200
30
0.786
1.500
830
1.236
2.000
1285
2.173
3.000
555
3.190
4.500
480
0.302
0.278
1.844
75
1314
1389
1904
20
98.930
1.798
52.34
2RAY
19492
19434
0.00
0.00
1
99.7
1.798
1.84
98.9
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
data extraction
PDB
sw-help@rcsb.rutgers.edu
July 2, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.000
data collection
HKL-3000
data reduction
DENZO
data scaling
SCALEPACK
data scaling
HKL-3000
phasing
REFMAC
5.2
N
beta-chlorophenetole in complex with T4 lysozyme L99A
1
N
N
2
N
N
3
N
N
4
N
N
X
ASN
2
A
ASN
2
HELX_P
X
GLY
12
A
GLY
12
1
1
11
X
SER
38
A
SER
38
HELX_P
X
GLY
51
A
GLY
51
1
2
14
X
THR
59
A
THR
59
HELX_P
X
ASN
81
A
ASN
81
1
3
23
X
LYS
83
A
LYS
83
HELX_P
X
LEU
91
A
LEU
91
1
4
9
X
ASP
92
A
ASP
92
HELX_P
X
GLY
113
A
GLY
113
1
5
22
X
PHE
114
A
PHE
114
HELX_P
X
GLN
123
A
GLN
123
1
6
10
X
ARG
125
A
ARG
125
HELX_P
X
ALA
134
A
ALA
134
1
7
10
X
SER
136
A
SER
136
HELX_P
X
THR
142
A
THR
142
1
8
7
X
THR
142
A
THR
142
HELX_P
X
GLY
156
A
GLY
156
1
9
15
X
TRP
158
A
TRP
158
HELX_P
X
LYS
162
A
LYS
162
5
10
5
HYDROLASE
protein cavities, HYDROLASE
LYS_BPT4
UNP
1
1
P00720
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YK
1
162
2RAY
1
162
P00720
X
1
1
162
1
CYS
engineered mutation
THR
54
2RAY
X
P00720
UNP
54
54
1
CYS
engineered mutation
ALA
97
2RAY
X
P00720
UNP
97
97
1
LEU
engineered mutation
ALA
99
2RAY
X
P00720
UNP
99
99
3
anti-parallel
anti-parallel
X
ARG
14
A
ARG
14
X
LYS
19
A
LYS
19
X
TYR
25
A
TYR
25
X
GLY
28
A
GLY
28
X
HIS
31
A
HIS
31
X
LEU
32
A
LEU
32
BINDING SITE FOR RESIDUE PO4 X 1001
X
PO4
1001
Software
9
BINDING SITE FOR RESIDUE 258 X 2001
X
258
2001
Software
8
X
ARG
14
A
ARG
14
9
1_555
X
LYS
19
A
LYS
19
9
1_555
X
ARG
125
A
ARG
125
9
4_655
X
TRP
126
A
TRP
126
9
4_655
X
ASP
127
A
ASP
127
9
4_655
X
GLU
128
A
GLU
128
9
4_655
X
HOH
2046
D
HOH
9
4_655
X
HOH
2149
D
HOH
9
1_555
X
HOH
2163
D
HOH
9
1_555
X
TYR
88
A
TYR
88
8
1_555
X
ALA
99
A
ALA
99
8
1_555
X
MET
102
A
MET
102
8
1_555
X
SER
117
A
SER
117
8
1_555
X
LEU
118
A
LEU
118
8
1_555
X
LEU
121
A
LEU
121
8
1_555
X
LEU
133
A
LEU
133
8
1_555
X
PHE
153
A
PHE
153
8
1_555
154
P 32 2 1