0.014223
0.000000
0.000000
0.000000
0.014223
0.000000
0.000000
0.000000
0.005344
0.00000
0.00000
0.00000
Lehtio, L.
Hogbom, M.
Uppenberg, J.
Arrowsmith, C.H.
Berglund, H.
Edwards, A.M.
Ehn, M.
Flodin, S.
Flores, A.
Graslund, S.
Hallberg, B.M.
Hammarstrom, M.
Kotenyova, T.
Nilsson-Ehle, P.
Nordlund, P.
Nyman, T.
Ogg, D.
Persson, C.
Sagemark, J.
Stenmark, P.
Sundstrom, M.
Thorsell, A.G.
Van den Berg, S.
Weigelt, J.
Holmberg-Schiavone, L.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
70.310
70.310
187.120
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
S
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
O
N
310
N
N
N
311
S
C
N
312
N
C
N
313
N
O
N
314
R
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
N
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
N
365
N
O
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
N
383
N
C
N
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
US
Plos One
1932-6203
5
12791
12791
10.1371/journal.pone.0012791
20941364
Comparative Structural Analysis of Human DEAD-Box RNA Helicases.
2010
10.2210/pdb2rb4/pdb
pdb_00002rb4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
IMAGE PLATE
2006-01-16
MACSCIENCE
Si-111 crystal
SINGLE WAVELENGTH
M
x-ray
1
0.95373
1.0
14.2
BESSY
0.95373
SYNCHROTRON
BESSY BEAMLINE 14.2
20166.141
ATP-dependent RNA helicase DDX25
3.6.1.-
Helicase domain: Residues 307-479
2
man
polymer
35.453
CHLORIDE ION
2
syn
non-polymer
96.063
SULFATE ION
2
syn
non-polymer
65.409
ZINC ION
1
syn
non-polymer
18.015
water
5
nat
water
DEAD box protein 25, Gonadotropin-regulated testicular RNA helicase
no
no
SMLTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRF
RDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN
SSIKQLNAEDMDEIE
SMLTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRF
RDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN
SSIKQLNAEDMDEIE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
DDX25, GRTH
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
Plasmid
pNIC-Bsa4
1
2.87
57.10
VAPOR DIFFUSION, HANGING DROP
6.5
0.1 M Bis-Tris propane, 2.5 M Ammonium sulfate pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
293.0
Structural Genomics Consortium
SGC
reflns
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ncs_dom_lim
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Data collection
Data collection
Database references
Derived calculations
Refinement description
1
0
2007-10-02
1
1
2011-07-13
1
2
2017-10-11
1
3
2023-08-30
_reflns.percent_possible_obs
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.end_auth_comp_id
_struct_ncs_dom_lim.end_label_asym_id
_struct_ncs_dom_lim.end_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
2007-10-02
SPRSDE
Y
RCSB
Y
RCSB
2007-09-18
REL
REL
CL
CHLORIDE ION
SO4
SULFATE ION
ZN
ZINC ION
HOH
water
1FUK
PDB entry 1FUK
PDB
experimental model
CL
1
2
CL
CL
1
A
CL
2
2
CL
CL
2
A
SO4
2
3
SO4
SO4
480
A
ZN
1
4
ZN
ZN
481
A
SO4
1
3
SO4
SO4
1
B
HOH
1
5
HOH
HOH
482
A
HOH
3
5
HOH
HOH
483
A
HOH
5
5
HOH
HOH
484
A
HOH
4
5
HOH
HOH
480
B
HOH
2
5
HOH
HOH
481
B
n
1
305
A
n
2
306
A
LEU
307
n
3
LEU
307
A
THR
308
n
4
THR
308
A
LEU
309
n
5
LEU
309
A
ASN
310
n
6
ASN
310
A
ASN
311
n
7
ASN
311
A
ILE
312
n
8
ILE
312
A
ARG
313
n
9
ARG
313
A
GLN
314
n
10
GLN
314
A
TYR
315
n
11
TYR
315
A
TYR
316
n
12
TYR
316
A
VAL
317
n
13
VAL
317
A
LEU
318
n
14
LEU
318
A
CYS
319
n
15
CYS
319
A
GLU
320
n
16
GLU
320
A
HIS
321
n
17
HIS
321
A
ARG
322
n
18
ARG
322
A
LYS
323
n
19
LYS
323
A
ASP
324
n
20
ASP
324
A
LYS
325
n
21
LYS
325
A
TYR
326
n
22
TYR
326
A
GLN
327
n
23
GLN
327
A
ALA
328
n
24
ALA
328
A
LEU
329
n
25
LEU
329
A
CYS
330
n
26
CYS
330
A
ASN
331
n
27
ASN
331
A
ILE
332
n
28
ILE
332
A
TYR
333
n
29
TYR
333
A
GLY
334
n
30
GLY
334
A
SER
335
n
31
SER
335
A
ILE
336
n
32
ILE
336
A
THR
337
n
33
THR
337
A
ILE
338
n
34
ILE
338
A
GLY
339
n
35
GLY
339
A
GLN
340
n
36
GLN
340
A
ALA
341
n
37
ALA
341
A
ILE
342
n
38
ILE
342
A
ILE
343
n
39
ILE
343
A
PHE
344
n
40
PHE
344
A
CYS
345
n
41
CYS
345
A
GLN
346
n
42
GLN
346
A
THR
347
n
43
THR
347
A
ARG
348
n
44
ARG
348
A
ARG
349
n
45
ARG
349
A
ASN
350
n
46
ASN
350
A
ALA
351
n
47
ALA
351
A
LYS
352
n
48
LYS
352
A
TRP
353
n
49
TRP
353
A
LEU
354
n
50
LEU
354
A
THR
355
n
51
THR
355
A
VAL
356
n
52
VAL
356
A
GLU
357
n
53
GLU
357
A
MET
358
n
54
MET
358
A
ILE
359
n
55
ILE
359
A
GLN
360
n
56
GLN
360
A
ASP
361
n
57
ASP
361
A
GLY
362
n
58
GLY
362
A
HIS
363
n
59
HIS
363
A
GLN
364
n
60
GLN
364
A
VAL
365
n
61
VAL
365
A
SER
366
n
62
SER
366
A
LEU
367
n
63
LEU
367
A
LEU
368
n
64
LEU
368
A
SER
369
n
65
SER
369
A
GLY
370
n
66
GLY
370
A
GLU
371
n
67
GLU
371
A
LEU
372
n
68
LEU
372
A
THR
373
n
69
THR
373
A
VAL
374
n
70
VAL
374
A
GLU
375
n
71
GLU
375
A
GLN
376
n
72
GLN
376
A
ARG
377
n
73
ARG
377
A
ALA
378
n
74
ALA
378
A
SER
379
n
75
SER
379
A
ILE
380
n
76
ILE
380
A
ILE
381
n
77
ILE
381
A
GLN
382
n
78
GLN
382
A
ARG
383
n
79
ARG
383
A
PHE
384
n
80
PHE
384
A
ARG
385
n
81
ARG
385
A
ASP
386
n
82
ASP
386
A
GLY
387
n
83
GLY
387
A
LYS
388
n
84
LYS
388
A
GLU
389
n
85
GLU
389
A
LYS
390
n
86
LYS
390
A
VAL
391
n
87
VAL
391
A
LEU
392
n
88
LEU
392
A
ILE
393
n
89
ILE
393
A
THR
394
n
90
THR
394
A
THR
395
n
91
THR
395
A
ASN
396
n
92
ASN
396
A
VAL
397
n
93
VAL
397
A
CYS
398
n
94
CYS
398
A
ALA
399
n
95
ALA
399
A
ARG
400
n
96
ARG
400
A
GLY
401
n
97
GLY
401
A
ILE
402
n
98
ILE
402
A
ASP
403
n
99
ASP
403
A
VAL
404
n
100
VAL
404
A
LYS
405
n
101
LYS
405
A
GLN
406
n
102
GLN
406
A
VAL
407
n
103
VAL
407
A
THR
408
n
104
THR
408
A
ILE
409
n
105
ILE
409
A
VAL
410
n
106
VAL
410
A
VAL
411
n
107
VAL
411
A
ASN
412
n
108
ASN
412
A
PHE
413
n
109
PHE
413
A
ASP
414
n
110
ASP
414
A
LEU
415
n
111
LEU
415
A
PRO
416
n
112
PRO
416
A
VAL
417
n
113
VAL
417
A
n
114
418
A
n
115
419
A
GLY
420
n
116
GLY
420
A
GLU
421
n
117
GLU
421
A
GLU
422
n
118
GLU
422
A
PRO
423
n
119
PRO
423
A
ASP
424
n
120
ASP
424
A
TYR
425
n
121
TYR
425
A
GLU
426
n
122
GLU
426
A
THR
427
n
123
THR
427
A
TYR
428
n
124
TYR
428
A
LEU
429
n
125
LEU
429
A
HIS
430
n
126
HIS
430
A
ARG
431
n
127
ARG
431
A
ILE
432
n
128
ILE
432
A
GLY
433
n
129
GLY
433
A
ARG
434
n
130
ARG
434
A
THR
435
n
131
THR
435
A
n
132
436
A
n
133
437
A
n
134
438
A
n
135
439
A
LYS
440
n
136
LYS
440
A
LYS
441
n
137
LYS
441
A
GLY
442
n
138
GLY
442
A
LEU
443
n
139
LEU
443
A
ALA
444
n
140
ALA
444
A
PHE
445
n
141
PHE
445
A
ASN
446
n
142
ASN
446
A
MET
447
n
143
MET
447
A
ILE
448
n
144
ILE
448
A
GLU
449
n
145
GLU
449
A
VAL
450
n
146
VAL
450
A
ASP
451
n
147
ASP
451
A
GLU
452
n
148
GLU
452
A
LEU
453
n
149
LEU
453
A
PRO
454
n
150
PRO
454
A
SER
455
n
151
SER
455
A
LEU
456
n
152
LEU
456
A
MET
457
n
153
MET
457
A
LYS
458
n
154
LYS
458
A
ILE
459
n
155
ILE
459
A
GLN
460
n
156
GLN
460
A
ASP
461
n
157
ASP
461
A
HIS
462
n
158
HIS
462
A
PHE
463
n
159
PHE
463
A
ASN
464
n
160
ASN
464
A
SER
465
n
161
SER
465
A
SER
466
n
162
SER
466
A
ILE
467
n
163
ILE
467
A
LYS
468
n
164
LYS
468
A
GLN
469
n
165
GLN
469
A
LEU
470
n
166
LEU
470
A
ASN
471
n
167
ASN
471
A
ALA
472
n
168
ALA
472
A
GLU
473
n
169
GLU
473
A
ASP
474
n
170
ASP
474
A
MET
475
n
171
MET
475
A
ASP
476
n
172
ASP
476
A
n
173
477
A
n
174
478
A
n
175
479
A
n
1
305
B
n
2
306
B
LEU
307
n
3
LEU
307
B
THR
308
n
4
THR
308
B
LEU
309
n
5
LEU
309
B
ASN
310
n
6
ASN
310
B
ASN
311
n
7
ASN
311
B
ILE
312
n
8
ILE
312
B
ARG
313
n
9
ARG
313
B
GLN
314
n
10
GLN
314
B
TYR
315
n
11
TYR
315
B
TYR
316
n
12
TYR
316
B
VAL
317
n
13
VAL
317
B
LEU
318
n
14
LEU
318
B
CYS
319
n
15
CYS
319
B
GLU
320
n
16
GLU
320
B
HIS
321
n
17
HIS
321
B
ARG
322
n
18
ARG
322
B
LYS
323
n
19
LYS
323
B
ASP
324
n
20
ASP
324
B
LYS
325
n
21
LYS
325
B
TYR
326
n
22
TYR
326
B
GLN
327
n
23
GLN
327
B
ALA
328
n
24
ALA
328
B
LEU
329
n
25
LEU
329
B
CYS
330
n
26
CYS
330
B
ASN
331
n
27
ASN
331
B
ILE
332
n
28
ILE
332
B
TYR
333
n
29
TYR
333
B
GLY
334
n
30
GLY
334
B
SER
335
n
31
SER
335
B
ILE
336
n
32
ILE
336
B
THR
337
n
33
THR
337
B
ILE
338
n
34
ILE
338
B
GLY
339
n
35
GLY
339
B
GLN
340
n
36
GLN
340
B
ALA
341
n
37
ALA
341
B
ILE
342
n
38
ILE
342
B
ILE
343
n
39
ILE
343
B
PHE
344
n
40
PHE
344
B
CYS
345
n
41
CYS
345
B
GLN
346
n
42
GLN
346
B
THR
347
n
43
THR
347
B
ARG
348
n
44
ARG
348
B
ARG
349
n
45
ARG
349
B
ASN
350
n
46
ASN
350
B
ALA
351
n
47
ALA
351
B
LYS
352
n
48
LYS
352
B
TRP
353
n
49
TRP
353
B
LEU
354
n
50
LEU
354
B
THR
355
n
51
THR
355
B
VAL
356
n
52
VAL
356
B
GLU
357
n
53
GLU
357
B
MET
358
n
54
MET
358
B
ILE
359
n
55
ILE
359
B
GLN
360
n
56
GLN
360
B
ASP
361
n
57
ASP
361
B
GLY
362
n
58
GLY
362
B
HIS
363
n
59
HIS
363
B
GLN
364
n
60
GLN
364
B
VAL
365
n
61
VAL
365
B
SER
366
n
62
SER
366
B
LEU
367
n
63
LEU
367
B
LEU
368
n
64
LEU
368
B
SER
369
n
65
SER
369
B
GLY
370
n
66
GLY
370
B
GLU
371
n
67
GLU
371
B
LEU
372
n
68
LEU
372
B
THR
373
n
69
THR
373
B
VAL
374
n
70
VAL
374
B
GLU
375
n
71
GLU
375
B
GLN
376
n
72
GLN
376
B
ARG
377
n
73
ARG
377
B
ALA
378
n
74
ALA
378
B
SER
379
n
75
SER
379
B
ILE
380
n
76
ILE
380
B
ILE
381
n
77
ILE
381
B
GLN
382
n
78
GLN
382
B
ARG
383
n
79
ARG
383
B
PHE
384
n
80
PHE
384
B
ARG
385
n
81
ARG
385
B
ASP
386
n
82
ASP
386
B
GLY
387
n
83
GLY
387
B
LYS
388
n
84
LYS
388
B
GLU
389
n
85
GLU
389
B
LYS
390
n
86
LYS
390
B
VAL
391
n
87
VAL
391
B
LEU
392
n
88
LEU
392
B
ILE
393
n
89
ILE
393
B
THR
394
n
90
THR
394
B
THR
395
n
91
THR
395
B
ASN
396
n
92
ASN
396
B
VAL
397
n
93
VAL
397
B
CYS
398
n
94
CYS
398
B
ALA
399
n
95
ALA
399
B
ARG
400
n
96
ARG
400
B
GLY
401
n
97
GLY
401
B
ILE
402
n
98
ILE
402
B
ASP
403
n
99
ASP
403
B
VAL
404
n
100
VAL
404
B
LYS
405
n
101
LYS
405
B
GLN
406
n
102
GLN
406
B
VAL
407
n
103
VAL
407
B
THR
408
n
104
THR
408
B
ILE
409
n
105
ILE
409
B
VAL
410
n
106
VAL
410
B
VAL
411
n
107
VAL
411
B
ASN
412
n
108
ASN
412
B
PHE
413
n
109
PHE
413
B
ASP
414
n
110
ASP
414
B
LEU
415
n
111
LEU
415
B
PRO
416
n
112
PRO
416
B
VAL
417
n
113
VAL
417
B
n
114
418
B
n
115
419
B
GLY
420
n
116
GLY
420
B
GLU
421
n
117
GLU
421
B
GLU
422
n
118
GLU
422
B
PRO
423
n
119
PRO
423
B
ASP
424
n
120
ASP
424
B
TYR
425
n
121
TYR
425
B
GLU
426
n
122
GLU
426
B
THR
427
n
123
THR
427
B
TYR
428
n
124
TYR
428
B
LEU
429
n
125
LEU
429
B
HIS
430
n
126
HIS
430
B
ARG
431
n
127
ARG
431
B
ILE
432
n
128
ILE
432
B
GLY
433
n
129
GLY
433
B
ARG
434
n
130
ARG
434
B
THR
435
n
131
THR
435
B
n
132
436
B
n
133
437
B
n
134
438
B
n
135
439
B
n
136
440
B
LYS
441
n
137
LYS
441
B
GLY
442
n
138
GLY
442
B
LEU
443
n
139
LEU
443
B
ALA
444
n
140
ALA
444
B
PHE
445
n
141
PHE
445
B
ASN
446
n
142
ASN
446
B
MET
447
n
143
MET
447
B
ILE
448
n
144
ILE
448
B
GLU
449
n
145
GLU
449
B
VAL
450
n
146
VAL
450
B
ASP
451
n
147
ASP
451
B
GLU
452
n
148
GLU
452
B
LEU
453
n
149
LEU
453
B
PRO
454
n
150
PRO
454
B
SER
455
n
151
SER
455
B
LEU
456
n
152
LEU
456
B
MET
457
n
153
MET
457
B
LYS
458
n
154
LYS
458
B
ILE
459
n
155
ILE
459
B
GLN
460
n
156
GLN
460
B
ASP
461
n
157
ASP
461
B
HIS
462
n
158
HIS
462
B
PHE
463
n
159
PHE
463
B
ASN
464
n
160
ASN
464
B
SER
465
n
161
SER
465
B
SER
466
n
162
SER
466
B
ILE
467
n
163
ILE
467
B
LYS
468
n
164
LYS
468
B
GLN
469
n
165
GLN
469
B
LEU
470
n
166
LEU
470
B
ASN
471
n
167
ASN
471
B
ALA
472
n
168
ALA
472
B
GLU
473
n
169
GLU
473
B
ASP
474
n
170
ASP
474
B
MET
475
n
171
MET
475
B
ASP
476
n
172
ASP
476
B
n
173
477
B
n
174
478
B
n
175
479
B
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
A
CYS
398
A
SG
CYS
94
1_555
A
ZN
481
F
ZN
ZN
1_555
A
HIS
430
A
ND1
HIS
126
1_555
89.7
A
CYS
398
A
SG
CYS
94
1_555
A
ZN
481
F
ZN
ZN
1_555
B
CYS
398
B
SG
CYS
94
1_555
145.9
A
HIS
430
A
ND1
HIS
126
1_555
A
ZN
481
F
ZN
ZN
1_555
B
CYS
398
B
SG
CYS
94
1_555
121.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
368
A
N
LEU
64
A
O
ILE
393
A
O
ILE
89
A
O
LEU
392
A
O
LEU
88
A
N
ILE
343
A
N
ILE
39
A
N
PHE
344
A
N
PHE
40
A
O
VAL
411
A
O
VAL
107
A
N
ASN
412
A
N
ASN
108
A
O
PHE
445
A
O
PHE
141
A
O
ALA
444
A
O
ALA
140
A
N
ARG
313
A
N
ARG
9
A
N
TYR
316
A
N
TYR
12
A
O
LEU
470
A
O
LEU
166
B
N
LEU
368
B
N
LEU
64
B
O
ILE
393
B
O
ILE
89
B
O
LEU
392
B
O
LEU
88
B
N
ILE
343
B
N
ILE
39
B
N
PHE
344
B
N
PHE
40
B
O
VAL
411
B
O
VAL
107
B
N
ASN
412
B
N
ASN
108
B
O
PHE
445
B
O
PHE
141
B
O
ILE
448
B
O
ILE
144
B
N
VAL
317
B
N
VAL
13
B
N
TYR
316
B
N
TYR
12
B
O
LYS
468
B
O
LYS
164
1
A
CG
GLU
421
A
CG
GLU
117
1
Y
1
A
CD
GLU
421
A
CD
GLU
117
1
Y
1
A
OE1
GLU
421
A
OE1
GLU
117
1
Y
1
A
OE2
GLU
421
A
OE2
GLU
117
1
Y
1
A
CG
MET
475
A
CG
MET
171
1
Y
1
A
SD
MET
475
A
SD
MET
171
1
Y
1
A
CE
MET
475
A
CE
MET
171
1
Y
1
B
CG
GLU
421
B
CG
GLU
117
1
Y
1
B
CD
GLU
421
B
CD
GLU
117
1
Y
1
B
OE1
GLU
421
B
OE1
GLU
117
1
Y
1
B
OE2
GLU
421
B
OE2
GLU
117
1
Y
1
B
CG
MET
475
B
CG
MET
171
1
Y
1
B
SD
MET
475
B
SD
MET
171
1
Y
1
B
CE
MET
475
B
CE
MET
171
1
Y
1
A
SER
305
A
SER
1
1
Y
1
A
MET
306
A
MET
2
1
Y
1
A
LYS
418
A
LYS
114
1
Y
1
A
GLN
419
A
GLN
115
1
Y
1
A
GLY
436
A
GLY
132
1
Y
1
A
ARG
437
A
ARG
133
1
Y
1
A
PHE
438
A
PHE
134
1
Y
1
A
GLY
439
A
GLY
135
1
Y
1
A
GLU
477
A
GLU
173
1
Y
1
A
ILE
478
A
ILE
174
1
Y
1
A
GLU
479
A
GLU
175
1
Y
1
B
SER
305
B
SER
1
1
Y
1
B
MET
306
B
MET
2
1
Y
1
B
LYS
418
B
LYS
114
1
Y
1
B
GLN
419
B
GLN
115
1
Y
1
B
GLY
436
B
GLY
132
1
Y
1
B
ARG
437
B
ARG
133
1
Y
1
B
PHE
438
B
PHE
134
1
Y
1
B
GLY
439
B
GLY
135
1
Y
1
B
LYS
440
B
LYS
136
1
Y
1
B
GLU
477
B
GLU
173
1
Y
1
B
ILE
478
B
ILE
174
1
Y
1
B
GLU
479
B
GLU
175
1
Y
1
A
LEU
309
-111.79
-169.43
1
A
ASN
311
-107.83
61.83
1
A
ILE
338
-94.81
-79.13
1
A
ASP
403
-65.80
73.80
1
A
PRO
416
-63.88
92.28
1
A
ASN
464
38.51
45.58
1
A
ASN
471
-124.31
-169.63
1
A
ALA
472
-62.51
61.55
1
A
GLU
473
179.79
94.25
1
B
LEU
309
-112.06
-167.89
1
B
ASN
311
-108.62
61.93
1
B
ILE
338
-96.47
-73.15
1
B
ASP
403
-69.17
77.14
1
B
PRO
416
-65.34
94.28
1
B
ASN
464
34.88
49.18
1
B
ASN
471
-123.45
-167.43
1
B
ALA
472
-64.02
60.67
1
B
GLU
473
-178.87
93.23
82.026
-0.22
0.00
0.00
-0.22
0.00
0.45
0.939
0.922
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.26655
0.23338
0.23607
0.23607
2.80
19.44
974
11208
11208
8.0
100.00
41.767
0.361
RANDOM
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
1.361
0.373
0.80
0.80
1.20
PDB entry 1FUK
MAXIMUM LIKELIHOOD
MASK
2.80
19.44
5
2641
13
0
2623
0.010
0.022
2667
1.244
1.958
3595
6.446
5.000
321
38.818
24.545
132
18.195
15.000
498
22.595
15.000
20
0.083
0.200
415
0.003
0.020
1962
0.225
0.200
1088
0.311
0.200
1806
0.137
0.200
77
0.275
0.200
56
0.186
0.200
5
0.389
1.500
1663
0.721
2.000
2620
0.926
3.000
1117
1.573
4.500
975
1
A
1
1275
X-RAY DIFFRACTION
tight positional
0.04
0.05
1
A
1
1275
X-RAY DIFFRACTION
tight thermal
0.06
0.50
0.362
0.363
2.872
69
790
20
100.00
64.1
2.8
20
2RB4
12185
12185
0
0
0.107
1
15.65
8.8
0.820
2.8
2.9
2.59
1184
9.1
100
refinement
REFMAC
5.2.0019
data reduction
XDS
data scaling
XSCALE
phasing
MOLREP
Crystal structure of the Helicase domain of human DDX25 RNA helicase
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
3
N
N
5
N
N
5
N
N
Each monomer represents biological unit
A
HIS
321
A
HIS
17
HELX_P
A
GLY
334
A
GLY
30
1
1
14
A
THR
347
A
THR
43
HELX_P
A
GLN
360
A
GLN
56
1
2
14
A
THR
373
A
THR
69
HELX_P
A
ASP
386
A
ASP
82
1
3
14
A
ASP
424
A
ASP
120
HELX_P
A
GLY
433
A
GLY
129
1
4
10
A
GLU
449
A
GLU
145
HELX_P
A
ASP
451
A
ASP
147
5
5
3
A
GLU
452
A
GLU
148
HELX_P
A
ASN
464
A
ASN
160
1
6
13
B
HIS
321
B
HIS
17
HELX_P
B
GLY
334
B
GLY
30
1
7
14
B
THR
347
B
THR
43
HELX_P
B
GLN
360
B
GLN
56
1
8
14
B
THR
373
B
THR
69
HELX_P
B
ASP
386
B
ASP
82
1
9
14
B
ASP
424
B
ASP
120
HELX_P
B
GLY
433
B
GLY
129
1
10
10
B
GLU
449
B
GLU
145
HELX_P
B
ASP
451
B
ASP
147
5
11
3
B
GLU
452
B
GLU
148
HELX_P
B
ASN
464
B
ASN
160
1
12
13
metalc
2.251
A
CYS
398
A
SG
CYS
94
1_555
A
ZN
481
F
ZN
ZN
1_555
metalc
2.641
A
HIS
430
A
ND1
HIS
126
1_555
A
ZN
481
F
ZN
ZN
1_555
metalc
2.282
A
ZN
481
F
ZN
ZN
1_555
B
CYS
398
B
SG
CYS
94
1_555
HYDROLASE
RNA helicase, Rossmann fold, Structural Genomics, Structural Genomics Consortium, SGC, Alternative initiation, ATP-binding, Developmental protein, Differentiation, Hydrolase, mRNA transport, Nucleotide-binding, Nucleus, Phosphorylation, RNA-binding, Spermatogenesis, Translation regulation, Transport
A
B
A
B
A
B
A
B
A
B
A
B
A
B
A
LEU
307
A
LEU
3
A
ASN
311
A
ASN
7
1
B
LEU
307
B
LEU
3
B
ASN
311
B
ASN
7
1
A
ARG
313
A
ARG
9
A
THR
337
A
THR
33
1
B
ARG
313
B
ARG
9
B
THR
337
B
THR
33
1
A
GLY
339
A
GLY
35
A
VAL
397
A
VAL
93
1
B
GLY
339
B
GLY
35
B
VAL
397
B
VAL
93
1
A
ALA
399
A
ALA
95
A
VAL
417
A
VAL
113
1
B
ALA
399
B
ALA
95
B
VAL
417
B
VAL
113
1
A
GLY
420
A
GLY
116
A
GLU
422
A
GLU
118
1
B
GLY
420
B
GLY
116
B
GLU
422
B
GLU
118
1
A
PRO
423
A
PRO
119
A
LEU
429
A
LEU
125
1
B
PRO
423
B
PRO
119
B
LEU
429
B
LEU
125
1
A
ARG
431
A
ARG
127
A
SO4
480
E
SO4
1
B
ARG
431
B
ARG
127
B
HOH
480
I
HOH
1
DDX25_HUMAN
UNP
1
307
Q9UHL0
LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD
GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS
IKQLNAEDMDEIE
307
479
2RB4
307
479
Q9UHL0
A
1
3
175
307
479
2RB4
307
479
Q9UHL0
B
1
3
175
1
expression tag
SER
305
2RB4
A
Q9UHL0
UNP
1
1
expression tag
MET
306
2RB4
A
Q9UHL0
UNP
2
2
expression tag
SER
305
2RB4
B
Q9UHL0
UNP
1
2
expression tag
MET
306
2RB4
B
Q9UHL0
UNP
2
7
7
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
VAL
365
A
VAL
61
A
LEU
368
A
LEU
64
A
VAL
391
A
VAL
87
A
THR
394
A
THR
90
A
GLN
340
A
GLN
36
A
PHE
344
A
PHE
40
A
VAL
407
A
VAL
103
A
ASN
412
A
ASN
108
A
GLY
442
A
GLY
138
A
ILE
448
A
ILE
144
A
ILE
312
A
ILE
8
A
LEU
318
A
LEU
14
A
LYS
468
A
LYS
164
A
LEU
470
A
LEU
166
B
VAL
365
B
VAL
61
B
LEU
368
B
LEU
64
B
VAL
391
B
VAL
87
B
THR
394
B
THR
90
B
GLN
340
B
GLN
36
B
PHE
344
B
PHE
40
B
VAL
407
B
VAL
103
B
ASN
412
B
ASN
108
B
GLY
442
B
GLY
138
B
ILE
448
B
ILE
144
B
ILE
312
B
ILE
8
B
LEU
318
B
LEU
14
B
ILE
467
B
ILE
163
B
LEU
470
B
LEU
166
BINDING SITE FOR RESIDUE CL A 1
A
CL
1
Software
1
BINDING SITE FOR RESIDUE CL A 2
A
CL
2
Software
1
BINDING SITE FOR RESIDUE SO4 B 1
B
SO4
1
Software
3
BINDING SITE FOR RESIDUE SO4 A 480
A
SO4
480
Software
2
BINDING SITE FOR RESIDUE ZN A 481
A
ZN
481
Software
5
A
ARG
400
A
ARG
96
1
1_555
A
ARG
348
A
ARG
44
1
1_555
A
LEU
307
A
LEU
3
3
1_555
B
GLN
382
B
GLN
78
3
1_555
B
ARG
385
B
ARG
81
3
1_555
A
GLN
382
A
GLN
78
2
1_555
A
ARG
385
A
ARG
81
2
1_555
A
CYS
398
A
CYS
94
5
1_555
A
HIS
430
A
HIS
126
5
1_555
B
CYS
398
B
CYS
94
5
1_555
B
ARG
400
B
ARG
96
5
1_555
B
HIS
430
B
HIS
126
5
1_555
96
P 43 21 2