0.012583 0.000000 0.008799 0.000000 0.018878 0.000000 0.000000 0.000000 0.022137 0.000000 0.000000 0.000000 Malashkevich, V.N. Toro, R. Meyer, A.J. 0000-0002-0254-4955 Sauder, J.M. 0000-0002-2487-9713 Burley, S.K. Almo, S.C. New York SGX Research Center for Structural Genomics (NYSGXRC) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 124.960 90.000 79.474 52.973 55.124 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing To be Published 0353 Crystal structure of an uncharacterized protein Q2BKU2 from Neptuniibacter caesariensis. 0000-0002-2487-9713 10.2210/pdb2rjn/pdb pdb_00002rjn 100 1 X29 CCD 2007-10-11 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 0.97900 1.0 14.60 68890 0.059 2.37 2.000 50.000 19935 79.90 3.50 X29A NSLS 0.97900 SYNCHROTRON NSLS BEAMLINE X29A 17657.207 Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomain Residues 2-144 1 man polymer 18.015 water 64 nat water no no MSLNYKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDI ERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAFLREENLRLQEETEAKNKQEGHHHHHH MSLNYKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDI ERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAFLREENLRLQEETEAKNKQEGHHHHHH A NYSGXRC-11008k polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Neptuniibacter MED92 Escherichia sample MED92_01309 207954 Neptuniibacter caesariensis 562 Escherichia coli BL21(DE3)Codon+RIL Plasmid BC-pSGX3(BC) 1 2.69 54.32 VAPOR DIFFUSION, SITTING DROP 4 M Sodium formate, 0.01M Spermine tetrachloride, VAPOR DIFFUSION, SITTING DROP, temperature 294K 294 New York SGX Research Center for Structural Genomics NYSGXRC PSI, Protein Structure Initiative software audit_author audit_author citation_author struct_ref_seq_dif chem_comp_atom chem_comp_bond database_2 repository Initial release Advisory Version format compliance Refinement description Data collection Structure summary Database references Structure summary Data collection Database references 1 0 2007-10-23 1 1 2011-07-13 1 2 2017-10-25 1 3 2018-11-14 1 4 2021-02-03 1 5 2024-02-21 _audit_author.identifier_ORCID _audit_author.identifier_ORCID _citation_author.identifier_ORCID _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession Y RCSB Y RCSB 2007-10-15 REL REL 0.046 4.774 98.90 3.80 0.053 4.104 100.00 3.80 0.070 2.827 100.00 3.80 0.084 1.801 99.40 3.70 0.096 1.379 93.20 3.50 0.106 1.171 81.00 3.30 0.120 0.976 69.60 3.20 0.130 0.931 61.20 3.00 0.154 0.800 52.70 2.90 0.188 0.698 42.40 2.60 HOH water HOH 3 2 HOH HOH 155 A HOH 6 2 HOH HOH 156 A HOH 8 2 HOH HOH 157 A HOH 10 2 HOH HOH 158 A HOH 11 2 HOH HOH 159 A HOH 12 2 HOH HOH 160 A HOH 13 2 HOH HOH 161 A HOH 14 2 HOH HOH 162 A HOH 19 2 HOH HOH 163 A HOH 20 2 HOH HOH 164 A HOH 21 2 HOH HOH 165 A HOH 25 2 HOH HOH 166 A HOH 26 2 HOH HOH 167 A HOH 27 2 HOH HOH 168 A HOH 30 2 HOH HOH 169 A HOH 32 2 HOH HOH 170 A HOH 33 2 HOH HOH 171 A HOH 35 2 HOH HOH 172 A HOH 43 2 HOH HOH 173 A HOH 48 2 HOH HOH 174 A HOH 52 2 HOH HOH 175 A HOH 53 2 HOH HOH 176 A HOH 54 2 HOH HOH 177 A HOH 57 2 HOH HOH 178 A HOH 59 2 HOH HOH 179 A HOH 60 2 HOH HOH 180 A HOH 63 2 HOH HOH 181 A HOH 69 2 HOH HOH 182 A HOH 73 2 HOH HOH 183 A HOH 74 2 HOH HOH 184 A HOH 75 2 HOH HOH 185 A HOH 76 2 HOH HOH 186 A HOH 77 2 HOH HOH 187 A HOH 78 2 HOH HOH 188 A HOH 79 2 HOH HOH 189 A HOH 80 2 HOH HOH 190 A HOH 81 2 HOH HOH 191 A HOH 82 2 HOH HOH 192 A HOH 83 2 HOH HOH 193 A HOH 84 2 HOH HOH 194 A HOH 85 2 HOH HOH 195 A HOH 86 2 HOH HOH 196 A HOH 87 2 HOH HOH 197 A HOH 88 2 HOH HOH 198 A HOH 89 2 HOH HOH 199 A HOH 90 2 HOH HOH 200 A HOH 91 2 HOH HOH 201 A HOH 92 2 HOH HOH 202 A HOH 95 2 HOH HOH 203 A HOH 96 2 HOH HOH 204 A HOH 97 2 HOH HOH 205 A HOH 98 2 HOH HOH 206 A HOH 99 2 HOH HOH 207 A HOH 100 2 HOH HOH 208 A HOH 101 2 HOH HOH 209 A HOH 102 2 HOH HOH 210 A HOH 103 2 HOH HOH 211 A HOH 104 2 HOH HOH 212 A HOH 105 2 HOH HOH 213 A HOH 106 2 HOH HOH 214 A HOH 107 2 HOH HOH 215 A HOH 108 2 HOH HOH 216 A HOH 109 2 HOH HOH 217 A HOH 110 2 HOH HOH 218 A n 1 1 A n 2 2 A n 3 3 A ASN 4 n 4 ASN 4 A TYR 5 n 5 TYR 5 A LYS 6 n 6 LYS 6 A ASN 7 n 7 ASN 7 A TYR 8 n 8 TYR 8 A THR 9 n 9 THR 9 A VAL 10 n 10 VAL 10 A MET 11 n 11 MET 11 A LEU 12 n 12 LEU 12 A VAL 13 n 13 VAL 13 A ASP 14 n 14 ASP 14 A ASP 15 n 15 ASP 15 A GLU 16 n 16 GLU 16 A GLN 17 n 17 GLN 17 A PRO 18 n 18 PRO 18 A ILE 19 n 19 ILE 19 A LEU 20 n 20 LEU 20 A ASN 21 n 21 ASN 21 A SER 22 n 22 SER 22 A LEU 23 n 23 LEU 23 A LYS 24 n 24 LYS 24 A ARG 25 n 25 ARG 25 A LEU 26 n 26 LEU 26 A ILE 27 n 27 ILE 27 A LYS 28 n 28 LYS 28 A ARG 29 n 29 ARG 29 A LEU 30 n 30 LEU 30 A GLY 31 n 31 GLY 31 A CYS 32 n 32 CYS 32 A ASN 33 n 33 ASN 33 A ILE 34 n 34 ILE 34 A ILE 35 n 35 ILE 35 A THR 36 n 36 THR 36 A PHE 37 n 37 PHE 37 A THR 38 n 38 THR 38 A SER 39 n 39 SER 39 A PRO 40 n 40 PRO 40 A LEU 41 n 41 LEU 41 A ASP 42 n 42 ASP 42 A ALA 43 n 43 ALA 43 A LEU 44 n 44 LEU 44 A GLU 45 n 45 GLU 45 A ALA 46 n 46 ALA 46 A LEU 47 n 47 LEU 47 A LYS 48 n 48 LYS 48 A GLY 49 n 49 GLY 49 A THR 50 n 50 THR 50 A SER 51 n 51 SER 51 A VAL 52 n 52 VAL 52 A GLN 53 n 53 GLN 53 A LEU 54 n 54 LEU 54 A VAL 55 n 55 VAL 55 A ILE 56 n 56 ILE 56 A SER 57 n 57 SER 57 A ASP 58 n 58 ASP 58 A MET 59 n 59 MET 59 A ARG 60 n 60 ARG 60 A MET 61 n 61 MET 61 A PRO 62 n 62 PRO 62 A GLU 63 n 63 GLU 63 A MET 64 n 64 MET 64 A GLY 65 n 65 GLY 65 A GLY 66 n 66 GLY 66 A GLU 67 n 67 GLU 67 A VAL 68 n 68 VAL 68 A PHE 69 n 69 PHE 69 A LEU 70 n 70 LEU 70 A GLU 71 n 71 GLU 71 A GLN 72 n 72 GLN 72 A VAL 73 n 73 VAL 73 A ALA 74 n 74 ALA 74 A LYS 75 n 75 LYS 75 A SER 76 n 76 SER 76 A TYR 77 n 77 TYR 77 A PRO 78 n 78 PRO 78 A ASP 79 n 79 ASP 79 A ILE 80 n 80 ILE 80 A GLU 81 n 81 GLU 81 A ARG 82 n 82 ARG 82 A VAL 83 n 83 VAL 83 A VAL 84 n 84 VAL 84 A ILE 85 n 85 ILE 85 A SER 86 n 86 SER 86 A GLY 87 n 87 GLY 87 A TYR 88 n 88 TYR 88 A ALA 89 n 89 ALA 89 A ASP 90 n 90 ASP 90 A ALA 91 n 91 ALA 91 A GLN 92 n 92 GLN 92 A ALA 93 n 93 ALA 93 A THR 94 n 94 THR 94 A ILE 95 n 95 ILE 95 A ASP 96 n 96 ASP 96 A ALA 97 n 97 ALA 97 A VAL 98 n 98 VAL 98 A ASN 99 n 99 ASN 99 A ARG 100 n 100 ARG 100 A GLY 101 n 101 GLY 101 A LYS 102 n 102 LYS 102 A ILE 103 n 103 ILE 103 A SER 104 n 104 SER 104 A ARG 105 n 105 ARG 105 A PHE 106 n 106 PHE 106 A LEU 107 n 107 LEU 107 A LEU 108 n 108 LEU 108 A LYS 109 n 109 LYS 109 A PRO 110 n 110 PRO 110 A TRP 111 n 111 TRP 111 A GLU 112 n 112 GLU 112 A ASP 113 n 113 ASP 113 A GLU 114 n 114 GLU 114 A ASP 115 n 115 ASP 115 A VAL 116 n 116 VAL 116 A PHE 117 n 117 PHE 117 A LYS 118 n 118 LYS 118 A VAL 119 n 119 VAL 119 A VAL 120 n 120 VAL 120 A GLU 121 n 121 GLU 121 A LYS 122 n 122 LYS 122 A GLY 123 n 123 GLY 123 A LEU 124 n 124 LEU 124 A GLN 125 n 125 GLN 125 A LEU 126 n 126 LEU 126 A ALA 127 n 127 ALA 127 A PHE 128 n 128 PHE 128 A LEU 129 n 129 LEU 129 A ARG 130 n 130 ARG 130 A GLU 131 n 131 GLU 131 A GLU 132 n 132 GLU 132 A ASN 133 n 133 ASN 133 A LEU 134 n 134 LEU 134 A ARG 135 n 135 ARG 135 A LEU 136 n 136 LEU 136 A GLN 137 n 137 GLN 137 A GLU 138 n 138 GLU 138 A n 139 139 A n 140 140 A n 141 141 A n 142 142 A n 143 143 A n 144 144 A n 145 145 A n 146 146 A n 147 147 A n 148 148 A n 149 149 A n 150 150 A n 151 151 A n 152 152 A n 153 153 A n 154 154 A 1.9996 -0.0959 0.5858 4.3592 -0.1243 6.1434 0.0077 0.0076 0.0441 -0.3241 -0.0435 0.3447 0.0147 -0.7191 0.0358 -0.1617 -0.0052 -0.0095 -0.0738 -0.0040 -0.0947 refined -0.8908 21.1673 31.9980 X-RAY DIFFRACTION A 4 A 4 A 138 A 138 X-RAY DIFFRACTION 1 software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 35 A O ILE 35 A N LEU 12 A N LEU 12 A N MET 11 A N MET 11 A O LEU 54 A O LEU 54 A N VAL 55 A N VAL 55 A O GLU 81 A O GLU 81 A N VAL 84 A N VAL 84 A O LEU 107 A O LEU 107 1 A HOH 188 B HOH 1 A MET 1 A MET 1 1 Y 1 A SER 2 A SER 2 1 Y 1 A LEU 3 A LEU 3 1 Y 1 A GLU 139 A GLU 139 1 Y 1 A THR 140 A THR 140 1 Y 1 A GLU 141 A GLU 141 1 Y 1 A ALA 142 A ALA 142 1 Y 1 A LYS 143 A LYS 143 1 Y 1 A ASN 144 A ASN 144 1 Y 1 A LYS 145 A LYS 145 1 Y 1 A GLN 146 A GLN 146 1 Y 1 A GLU 147 A GLU 147 1 Y 1 A GLY 148 A GLY 148 1 Y 1 A HIS 149 A HIS 149 1 Y 1 A HIS 150 A HIS 150 1 Y 1 A HIS 151 A HIS 151 1 Y 1 A HIS 152 A HIS 152 1 Y 1 A HIS 153 A HIS 153 1 Y 1 A HIS 154 A HIS 154 1 Y 1 A A NH1 O ARG HOH 130 190 2.13 1 A A N O GLU HOH 63 161 2.16 1 A A LYS ASN 6 7 147.91 1 -6.33 0.50 120.30 113.97 A A A NE CZ NH1 ARG ARG ARG 130 130 130 N 1 4.75 0.50 120.30 125.05 A A A NE CZ NH2 ARG ARG ARG 130 130 130 N 1 A A C O GLU GLU 138 138 0.276 0.019 1.229 1.505 N 1 A TYR 5 -127.68 -158.61 1 A LYS 6 -68.93 63.69 1 A LEU 134 79.02 -11.23 39.612 -0.330 0.000 -0.930 -0.520 0.000 -0.210 0.956 0.921 The Bijvoet differences were used in phasing. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.236 0.185 0.187 2.100 19.230 481 9628 5.000 100.000 9.360 0.116 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 SAD 0.197 0.178 0.800 0.800 1.200 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.100 19.230 64 1142 0 0 1078 0.020 0.022 1093 1.867 1.991 1475 6.982 5.000 134 41.755 24.902 51 19.235 15.000 210 14.405 15.000 8 0.130 0.200 171 0.007 0.020 805 0.226 0.200 493 0.313 0.200 741 0.222 0.200 63 0.245 0.200 45 0.233 0.200 9 1.702 1.500 689 4.835 20.000 1089 9.877 20.000 447 5.684 4.500 386 0.297 0.194 2.154 22 432 454 20 100.000 2.000 50.000 2RJN 19935 0.059 2.372 1 14.600 3.500 79.900 0.188 2.00 2.07 1061 0.698 1 2.60 42.40 0.154 2.07 2.15 1308 0.800 1 2.90 52.70 0.130 2.15 2.25 1521 0.931 1 3.00 61.20 0.120 2.25 2.37 1737 0.976 1 3.20 69.60 0.106 2.37 2.52 2041 1.171 1 3.30 81.00 0.096 2.52 2.71 2285 1.379 1 3.50 93.20 0.084 2.71 2.99 2529 1.801 1 3.70 99.40 0.070 2.99 3.42 2491 2.827 1 3.80 100.00 0.053 3.42 4.31 2481 4.104 1 3.80 100.00 0.046 4.31 50.00 2481 4.774 1 3.80 98.90 data reduction Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm DENZO package data scaling Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm SCALEPACK package phasing George Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program data extraction PDB sw-help@rcsb.rutgers.edu July 2, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.000 data collection CBASS phasing SHELXD Crystal structure of an uncharacterized protein Q2BKU2 from Neptuniibacter caesariensis 1 N N 2 N N Authors state that the biological unit is unknown. A GLU 16 A GLU 16 HELX_P A ARG 29 A ARG 29 1 1 14 A SER 39 A SER 39 HELX_P A LYS 48 A LYS 48 1 2 10 A GLY 65 A GLY 65 HELX_P A TYR 77 A TYR 77 1 3 13 A GLY 87 A GLY 87 HELX_P A ALA 89 A ALA 89 5 4 3 A ASP 90 A ASP 90 HELX_P A ARG 100 A ARG 100 1 5 11 A GLU 112 A GLU 112 HELX_P A ASN 133 A ASN 133 1 6 22 HYDROLASE STRUCTURAL GENOMICS, Oceanospirillum sp. MED92, Neptuniibacter caesariensis, PSI-2, PROTEIN STRUCTURE INITIATIVE, New York SGX Research Center for Structural Genomics, NYSGXRC, Hydrolase A LYS 109 A LYS 109 1 A PRO 110 A PRO 110 0.78 Q2BKU2_9GAMM UNP 1 2 Q2BKU2 NYKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERV VISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAFLREENLRLQEETEAKNKQ 2 144 2RJN 4 146 Q2BKU2 A 1 4 146 1 expression tag MET 1 2RJN A Q2BKU2 UNP 1 1 expression tag SER 2 2RJN A Q2BKU2 UNP 2 1 expression tag LEU 3 2RJN A Q2BKU2 UNP 3 1 expression tag GLU 147 2RJN A Q2BKU2 UNP 147 1 expression tag GLY 148 2RJN A Q2BKU2 UNP 148 1 expression tag HIS 149 2RJN A Q2BKU2 UNP 149 1 expression tag HIS 150 2RJN A Q2BKU2 UNP 150 1 expression tag HIS 151 2RJN A Q2BKU2 UNP 151 1 expression tag HIS 152 2RJN A Q2BKU2 UNP 152 1 expression tag HIS 153 2RJN A Q2BKU2 UNP 153 1 expression tag HIS 154 2RJN A Q2BKU2 UNP 154 5 parallel parallel parallel parallel A ASN 33 A ASN 33 A PHE 37 A PHE 37 A THR 9 A THR 9 A VAL 13 A VAL 13 A LEU 54 A LEU 54 A ASP 58 A ASP 58 A GLU 81 A GLU 81 A SER 86 A SER 86 A ARG 105 A ARG 105 A LEU 108 A LEU 108 5 C 1 2 1