1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Bewley, C.A.
Lam, S.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H11 N O6 S
261.252
n
O-SULFO-L-TYROSINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
C
N
7
N
O
N
8
N
N
N
9
N
O
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
N
N
19
S
C
N
20
N
C
N
21
N
O
N
22
N
C
N
23
N
C
N
24
N
O
N
25
N
O
N
26
N
O
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
N
N
35
S
C
N
36
N
C
N
37
N
O
N
38
S
C
N
39
N
C
N
40
N
C
N
41
N
C
N
42
N
O
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
N
N
57
S
C
N
58
N
C
N
59
N
O
N
60
N
C
N
61
N
C
N
62
N
C
N
63
N
O
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
N
N
74
S
C
N
75
N
C
N
76
N
O
N
77
N
C
N
78
N
O
N
79
N
O
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
N
N
88
S
C
N
89
N
C
N
90
N
O
N
91
N
C
Y
92
N
C
Y
93
N
C
Y
94
N
C
Y
95
N
C
Y
96
N
C
Y
97
N
C
N
98
N
O
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
S
C
N
113
N
C
Y
114
N
C
Y
115
N
C
Y
116
N
C
Y
117
N
C
Y
118
N
C
Y
119
N
C
N
120
N
O
N
121
N
S
N
122
N
O
N
123
N
O
N
124
N
O
N
125
N
C
N
126
N
O
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
doub
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
Y
94
N
doub
Y
95
N
sing
Y
96
N
sing
N
97
N
sing
Y
98
N
doub
N
99
N
sing
Y
100
N
doub
N
101
N
sing
Y
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
Y
116
N
doub
Y
117
N
sing
Y
118
N
sing
N
119
N
sing
Y
120
N
doub
N
121
N
sing
Y
122
N
doub
N
123
N
sing
Y
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
US
Science
SCIEAS
0038
0036-8075
317
1930
1934
10.1126/science.1145373
17901336
Structures of the CCR5 N terminus and of a tyrosine-sulfated antibody with HIV-1 gp120 and CD4
2007
10.2210/pdb2rll/pdb
pdb_00002rll
1307.361
9-mer from C-C chemokine receptor type 5
Extracellular domain, UNP residues 7-15
1
syn
polymer
C-C CKR-5, CC-CKR-5, CCR-5, CCR5, HIV-1 fusion coreceptor, CHEMR13, CD195 antigen
no
yes
SPI(TYS)DIN(TYS)Y
SPIYDINYY
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
atom_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Atomic model
Data collection
1
0
2007-09-25
1
1
2011-07-13
1
2
2022-03-16
2
0
2023-11-15
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_conn.pdbx_leaving_atom_flag
_atom_site.auth_atom_id
_atom_site.label_atom_id
BMRB
Y
PDBJ
2007-07-21
REL
This peptide was chemically synthesized by solid phase synthesis and purified by reverse phase HPLC.; This sequence occurs naturally in humans.
sample
structures with the least restraint violations
30
1
2D 1H-13C HSQC
2D 1H-1H TOCSY
2D 1H-1H NOESY
2D 1H-1H COSY
800
uM
50mM NaCl
6.8
ambient
300
K
torsion angle dynamics
1
minimized average structure
800uM protein; 90% H2O, 10% D2O
90% H2O/10% D2O
Schwieters, Kuszewski, Tjandra and Clore
structure solution
X-PLOR NIH
Schwieters, Kuszewski, Tjandra and Clore
refinement
X-PLOR NIH
500
Bruker
AVANCE
Bruker Avance
600
Bruker
AVANCE
Bruker Avance
SER
7
n
1
SER
7
A
PRO
8
n
2
PRO
8
A
ILE
9
n
3
ILE
9
A
TYS
10
n
4
TYS
10
A
ASP
11
n
5
ASP
11
A
ILE
12
n
6
ILE
12
A
ASN
13
n
7
ASN
13
A
TYS
14
n
8
TYS
14
A
TYR
15
n
9
TYR
15
A
author_defined_assembly
1
monomeric
A
TYS
10
O-SULFO-L-TYROSINE
A
TYS
4
TYR
A
TYS
14
O-SULFO-L-TYROSINE
A
TYS
8
TYR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
minimized average
CCR5 Nt(7-15)
1
N
N
A
PRO
8
A
PRO
2
HELX_P
A
TYR
15
A
TYR
9
1
1
8
covale
1.305
both
A
ILE
9
A
C
ILE
3
1_555
A
TYS
10
A
N
TYS
4
1_555
covale
1.305
both
A
TYS
10
A
C
TYS
4
1_555
A
ASP
11
A
N
ASP
5
1_555
covale
1.305
both
A
ASN
13
A
C
ASN
7
1_555
A
TYS
14
A
N
TYS
8
1_555
covale
1.305
both
A
TYS
14
A
C
TYS
8
1_555
A
TYR
15
A
N
TYR
9
1_555
MEMBRANE PROTEIN
HIV-1 coreceptor CCR5 N-terminus bound to gp120:CD4, G-protein coupled receptor, Glycoprotein, Host-virus interaction, Membrane, Polymorphism, Sulfation, Transducer, Transmembrane, MEMBRANE PROTEIN
CCR5_HUMAN
UNP
1
7
P51681
SPIYDINYY
7
15
2RLL
7
15
P51681
A
1
1
9