1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Bewley, C.A. Lam, S.N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H11 N O6 S 261.252 n O-SULFO-L-TYROSINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N O N 8 N N N 9 N O N 10 N H N 11 N H N 12 N H N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N N N 19 S C N 20 N C N 21 N O N 22 N C N 23 N C N 24 N O N 25 N O N 26 N O N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N N N 35 S C N 36 N C N 37 N O N 38 S C N 39 N C N 40 N C N 41 N C N 42 N O N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N N N 57 S C N 58 N C N 59 N O N 60 N C N 61 N C N 62 N C N 63 N O N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N N N 74 S C N 75 N C N 76 N O N 77 N C N 78 N O N 79 N O N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N N N 88 S C N 89 N C N 90 N O N 91 N C Y 92 N C Y 93 N C Y 94 N C Y 95 N C Y 96 N C Y 97 N C N 98 N O N 99 N O N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N N N 112 S C N 113 N C Y 114 N C Y 115 N C Y 116 N C Y 117 N C Y 118 N C Y 119 N C N 120 N O N 121 N S N 122 N O N 123 N O N 124 N O N 125 N C N 126 N O N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N doub N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N doub N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N doub N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing Y 94 N doub Y 95 N sing Y 96 N sing N 97 N sing Y 98 N doub N 99 N sing Y 100 N doub N 101 N sing Y 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing Y 116 N doub Y 117 N sing Y 118 N sing N 119 N sing Y 120 N doub N 121 N sing Y 122 N doub N 123 N sing Y 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N doub N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing US Science SCIEAS 0038 0036-8075 317 1930 1934 10.1126/science.1145373 17901336 Structures of the CCR5 N terminus and of a tyrosine-sulfated antibody with HIV-1 gp120 and CD4 2007 10.2210/pdb2rll/pdb pdb_00002rll 1307.361 9-mer from C-C chemokine receptor type 5 Extracellular domain, UNP residues 7-15 1 syn polymer C-C CKR-5, CC-CKR-5, CCR-5, CCR5, HIV-1 fusion coreceptor, CHEMR13, CD195 antigen no yes SPI(TYS)DIN(TYS)Y SPIYDINYY A polypeptide(L) n n n n n n n n n database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_conn atom_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Data collection Database references Derived calculations Atomic model Data collection 1 0 2007-09-25 1 1 2011-07-13 1 2 2022-03-16 2 0 2023-11-15 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.pdbx_leaving_atom_flag _atom_site.auth_atom_id _atom_site.label_atom_id BMRB Y PDBJ 2007-07-21 REL This peptide was chemically synthesized by solid phase synthesis and purified by reverse phase HPLC.; This sequence occurs naturally in humans. sample structures with the least restraint violations 30 1 2D 1H-13C HSQC 2D 1H-1H TOCSY 2D 1H-1H NOESY 2D 1H-1H COSY 800 uM 50mM NaCl 6.8 ambient 300 K torsion angle dynamics 1 minimized average structure 800uM protein; 90% H2O, 10% D2O 90% H2O/10% D2O Schwieters, Kuszewski, Tjandra and Clore structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH 500 Bruker AVANCE Bruker Avance 600 Bruker AVANCE Bruker Avance SER 7 n 1 SER 7 A PRO 8 n 2 PRO 8 A ILE 9 n 3 ILE 9 A TYS 10 n 4 TYS 10 A ASP 11 n 5 ASP 11 A ILE 12 n 6 ILE 12 A ASN 13 n 7 ASN 13 A TYS 14 n 8 TYS 14 A TYR 15 n 9 TYR 15 A author_defined_assembly 1 monomeric A TYS 10 O-SULFO-L-TYROSINE A TYS 4 TYR A TYS 14 O-SULFO-L-TYROSINE A TYS 8 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 minimized average CCR5 Nt(7-15) 1 N N A PRO 8 A PRO 2 HELX_P A TYR 15 A TYR 9 1 1 8 covale 1.305 both A ILE 9 A C ILE 3 1_555 A TYS 10 A N TYS 4 1_555 covale 1.305 both A TYS 10 A C TYS 4 1_555 A ASP 11 A N ASP 5 1_555 covale 1.305 both A ASN 13 A C ASN 7 1_555 A TYS 14 A N TYS 8 1_555 covale 1.305 both A TYS 14 A C TYS 8 1_555 A TYR 15 A N TYR 9 1_555 MEMBRANE PROTEIN HIV-1 coreceptor CCR5 N-terminus bound to gp120:CD4, G-protein coupled receptor, Glycoprotein, Host-virus interaction, Membrane, Polymorphism, Sulfation, Transducer, Transmembrane, MEMBRANE PROTEIN CCR5_HUMAN UNP 1 7 P51681 SPIYDINYY 7 15 2RLL 7 15 P51681 A 1 1 9